Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75420.t1 | XP_003602071.2 | 94.1 | 239 | 10 | 1 | 1 | 239 | 1 | 235 | 1.00E-92 | 349.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75420.t1 | O80365 | 57.1 | 156 | 52 | 3 | 19 | 173 | 6 | 147 | 5.0e-43 | 176.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75420.t1 | B7FMM2 | 94.1 | 239 | 10 | 1 | 1 | 239 | 1 | 235 | 7.5e-93 | 349.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene75420.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04933 | MS.gene75420 | 0.800022 | 1.75E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75420.t1 | MTR_3g088630 | 96.234 | 239 | 5 | 1 | 1 | 239 | 1 | 235 | 5.12e-165 | 455 |
| MS.gene75420.t1 | MTR_8g038620 | 54.494 | 178 | 66 | 2 | 19 | 195 | 6 | 169 | 3.23e-59 | 185 |
| MS.gene75420.t1 | MTR_7g490310 | 54.706 | 170 | 58 | 5 | 22 | 186 | 9 | 164 | 2.92e-54 | 174 |
| MS.gene75420.t1 | MTR_3g015490 | 56.209 | 153 | 50 | 3 | 22 | 173 | 4 | 140 | 4.33e-51 | 164 |
| MS.gene75420.t1 | MTR_3g093860 | 53.472 | 144 | 48 | 2 | 23 | 166 | 19 | 143 | 4.99e-48 | 155 |
| MS.gene75420.t1 | MTR_5g036480 | 45.455 | 187 | 82 | 5 | 20 | 204 | 14 | 182 | 6.61e-48 | 158 |
| MS.gene75420.t1 | MTR_3g078613 | 50.649 | 154 | 53 | 3 | 21 | 173 | 22 | 153 | 1.30e-47 | 156 |
| MS.gene75420.t1 | MTR_3g078613 | 49.677 | 155 | 54 | 3 | 21 | 173 | 22 | 154 | 5.83e-47 | 154 |
| MS.gene75420.t1 | MTR_1g049100 | 53.289 | 152 | 50 | 4 | 20 | 170 | 6 | 137 | 2.46e-46 | 153 |
| MS.gene75420.t1 | MTR_4g106590 | 48.701 | 154 | 55 | 3 | 21 | 172 | 25 | 156 | 6.39e-44 | 147 |
| MS.gene75420.t1 | MTR_6g007460 | 39.269 | 219 | 57 | 4 | 19 | 183 | 8 | 204 | 1.05e-43 | 146 |
| MS.gene75420.t1 | MTR_4g051330 | 66.038 | 53 | 18 | 0 | 121 | 173 | 77 | 129 | 9.07e-19 | 80.5 |
| MS.gene75420.t1 | MTR_1g067110 | 31.034 | 116 | 79 | 1 | 99 | 213 | 131 | 246 | 6.81e-11 | 62.0 |
| MS.gene75420.t1 | MTR_1g067110 | 31.034 | 116 | 79 | 1 | 99 | 213 | 131 | 246 | 7.31e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75420.t1 | AT2G41310 | 58.170 | 153 | 49 | 3 | 22 | 173 | 9 | 147 | 6.30e-59 | 186 |
| MS.gene75420.t1 | AT3G57040 | 57.051 | 156 | 54 | 3 | 19 | 173 | 6 | 149 | 1.99e-56 | 180 |
| MS.gene75420.t1 | AT3G57040 | 57.051 | 156 | 54 | 3 | 19 | 173 | 6 | 149 | 1.99e-56 | 180 |
| MS.gene75420.t1 | AT1G59940 | 47.647 | 170 | 66 | 3 | 11 | 179 | 22 | 169 | 4.40e-49 | 161 |
| MS.gene75420.t1 | AT3G48100 | 51.592 | 157 | 54 | 3 | 22 | 177 | 25 | 160 | 1.61e-47 | 155 |
| MS.gene75420.t1 | AT1G59940 | 47.647 | 170 | 66 | 3 | 11 | 179 | 114 | 261 | 1.87e-47 | 159 |
| MS.gene75420.t1 | AT1G10470 | 50.000 | 162 | 58 | 3 | 17 | 177 | 15 | 154 | 4.38e-47 | 156 |
| MS.gene75420.t1 | AT5G62920 | 53.947 | 152 | 47 | 3 | 22 | 172 | 25 | 154 | 6.86e-47 | 154 |
| MS.gene75420.t1 | AT1G10470 | 50.000 | 162 | 58 | 3 | 17 | 177 | 29 | 168 | 7.18e-47 | 156 |
| MS.gene75420.t1 | AT3G56380 | 51.299 | 154 | 53 | 3 | 19 | 171 | 17 | 149 | 2.87e-45 | 149 |
| MS.gene75420.t1 | AT1G19050 | 50.327 | 153 | 53 | 3 | 21 | 172 | 23 | 153 | 3.83e-45 | 150 |
| MS.gene75420.t1 | AT3G56380 | 50.323 | 155 | 54 | 3 | 19 | 171 | 17 | 150 | 7.13e-45 | 147 |
| MS.gene75420.t1 | AT1G74890 | 48.718 | 156 | 57 | 3 | 21 | 175 | 17 | 150 | 2.82e-44 | 148 |
| MS.gene75420.t1 | AT2G40670 | 46.835 | 158 | 54 | 3 | 20 | 171 | 27 | 160 | 1.19e-41 | 140 |
| MS.gene75420.t1 | AT2G40670 | 45.912 | 159 | 55 | 3 | 20 | 171 | 27 | 161 | 3.17e-41 | 139 |
| MS.gene75420.t1 | AT2G07440 | 53.846 | 52 | 24 | 0 | 122 | 173 | 10 | 61 | 8.23e-15 | 69.3 |
| MS.gene75420.t1 | AT1G10470 | 36.471 | 85 | 53 | 1 | 92 | 175 | 6 | 90 | 1.24e-13 | 67.4 |
Find 46 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCGCCAACCCTTTCATTT+TGG | 0.085264 | 3.3:+73424006 | None:intergenic |
| CTGCACTGCAGGGATCTTCT+TGG | 0.261594 | 3.3:-73424556 | MS.gene75420:intron |
| GATAAGGCTTTGAAATATCT+TGG | 0.316965 | 3.3:-73427077 | MS.gene75420:CDS |
| TCTGATGACATAACCACAAC+TGG | 0.369928 | 3.3:+73424524 | None:intergenic |
| AATTGATATGGAGCTTGGTT+TGG | 0.375541 | 3.3:-73427403 | None:intergenic |
| CACCAAATTGATATGGAGCT+TGG | 0.422042 | 3.3:-73427408 | None:intergenic |
| ATTGATCTCTCTGGAGGCTC+AGG | 0.433469 | 3.3:+73424031 | None:intergenic |
| GTCCGAGTCTGTGGTGGTAG+TGG | 0.436880 | 3.3:+73424135 | None:intergenic |
| ATGACAGATTATTGCATGCC+TGG | 0.445954 | 3.3:-73425804 | MS.gene75420:CDS |
| AATGAAAGGGTTGGCGGTGG+TGG | 0.458526 | 3.3:-73424002 | MS.gene75420:CDS |
| GCTAATAGGTGCTTGGAAGA+AGG | 0.458769 | 3.3:-73424271 | MS.gene75420:intron |
| CTGTGTGGACTCTGGAGATA+AGG | 0.474705 | 3.3:-73427093 | MS.gene75420:CDS |
| ACTTACATGCTAATTCTAGA+AGG | 0.476558 | 3.3:+73424494 | None:intergenic |
| ATTACCTCTTGTAGCTGCAA+TGG | 0.489838 | 3.3:+73426972 | None:intergenic |
| CTAATAGGTGCTTGGAAGAA+GGG | 0.490036 | 3.3:-73424270 | MS.gene75420:intron |
| TAATTTGGCTAATAGGTGCT+TGG | 0.497490 | 3.3:-73424278 | MS.gene75420:intron |
| ACAGTTACCTGTGTGGACTC+TGG | 0.503672 | 3.3:-73427101 | MS.gene75420:intron |
| CTCTGGAGGCTCAGGAGACA+TGG | 0.506463 | 3.3:+73424039 | None:intergenic |
| TTGGAAAGATGTTCCAGTTG+TGG | 0.523397 | 3.3:-73424537 | MS.gene75420:CDS |
| AGATCAATGCCCAAAATGAA+AGG | 0.528945 | 3.3:-73424016 | MS.gene75420:CDS |
| CTTAGAGATTCTTCATGCAA+AGG | 0.532173 | 3.3:-73427276 | MS.gene75420:intron |
| TAGATGATAGTGTCATTGAT+AGG | 0.538094 | 3.3:-73427317 | MS.gene75420:CDS |
| TTGGGCATTGATCTCTCTGG+AGG | 0.540639 | 3.3:+73424025 | None:intergenic |
| AAATCATAGCCACTCATCCC+AGG | 0.545060 | 3.3:+73425786 | None:intergenic |
| GCCCAAAATGAAAGGGTTGG+CGG | 0.559802 | 3.3:-73424008 | MS.gene75420:CDS |
| TGCAAATCTGATAACTGAAG+AGG | 0.563149 | 3.3:+73424226 | None:intergenic |
| GCAAGAACACTTTCATGTGT+TGG | 0.563382 | 3.3:-73427343 | MS.gene75420:CDS |
| TTCCACTACCACCACAGACT+CGG | 0.564431 | 3.3:-73424137 | MS.gene75420:CDS |
| GATCAATGCCCAAAATGAAA+GGG | 0.575333 | 3.3:-73424015 | MS.gene75420:CDS |
| TGACAGATTATTGCATGCCT+GGG | 0.579945 | 3.3:-73425803 | MS.gene75420:CDS |
| TGCAATGGTTGTTGAAGAGG+AGG | 0.579983 | 3.3:+73426987 | None:intergenic |
| AGCTGCAATGGTTGTTGAAG+AGG | 0.586818 | 3.3:+73426984 | None:intergenic |
| ACATTAATAGTATCAGCAAA+CGG | 0.588740 | 3.3:-73424066 | MS.gene75420:CDS |
| TAATAGGTGCTTGGAAGAAG+GGG | 0.593866 | 3.3:-73424269 | MS.gene75420:intron |
| GTTGTCGTCGTCCGAGTCTG+TGG | 0.598775 | 3.3:+73424126 | None:intergenic |
| AATGCCCAAAATGAAAGGGT+TGG | 0.602173 | 3.3:-73424011 | MS.gene75420:CDS |
| TTGATAGGATGCTTCTAGAG+AGG | 0.609363 | 3.3:-73427302 | MS.gene75420:CDS |
| TAATAGTATCAGCAAACGGA+AGG | 0.609687 | 3.3:-73424062 | MS.gene75420:CDS |
| ACAACCATTGCAGCTACAAG+AGG | 0.610346 | 3.3:-73426976 | MS.gene75420:intron |
| TATTGCATGCCTGGGATGAG+TGG | 0.615464 | 3.3:-73425795 | MS.gene75420:CDS |
| CAAAATGAAAGGGTTGGCGG+TGG | 0.616336 | 3.3:-73424005 | MS.gene75420:CDS |
| TGATTTACTTAAAAGAGTCA+AGG | 0.620876 | 3.3:-73425769 | MS.gene75420:intron |
| GTCGTCGTCCGAGTCTGTGG+TGG | 0.650795 | 3.3:+73424129 | None:intergenic |
| TAATATAGAAGACTTTGTTG+AGG | 0.651761 | 3.3:+73427022 | None:intergenic |
| TGTTAAAACAGTTACCTGTG+TGG | 0.666037 | 3.3:-73427108 | MS.gene75420:intron |
| CTTATCTCCAGAGTCCACAC+AGG | 0.676893 | 3.3:+73427094 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATTAACAACTTAATT+TGG | - | chr3.3:73427100-73427119 | MS.gene75420:CDS | 10.0% |
| !! | TAATATATACATGTTATATA+TGG | - | chr3.3:73424889-73424908 | MS.gene75420:intron | 10.0% |
| !!! | AACATTAAATTTTTATGTTT+GGG | - | chr3.3:73425514-73425533 | MS.gene75420:intron | 10.0% |
| !!! | AAGTATTTAAGATATAATAA+AGG | + | chr3.3:73426983-73427002 | None:intergenic | 10.0% |
| !!! | TATACATTTTTTTTTTTTGA+AGG | - | chr3.3:73425129-73425148 | MS.gene75420:intron | 10.0% |
| !! | TCAAAAGAAGAAAAAATTAA+TGG | + | chr3.3:73426808-73426827 | None:intergenic | 15.0% |
| !!! | AAATTAAATCCTAACATTTT+GGG | - | chr3.3:73426678-73426697 | MS.gene75420:intron | 15.0% |
| !!! | AGAAAATTAATTTTACTTCA+AGG | - | chr3.3:73425818-73425837 | MS.gene75420:CDS | 15.0% |
| !!! | ATATATATTCTCTTGTTTAT+AGG | - | chr3.3:73425248-73425267 | MS.gene75420:intron | 15.0% |
| !!! | CTTAGCTTTATTAATTTTAT+GGG | + | chr3.3:73424645-73424664 | None:intergenic | 15.0% |
| !!! | GAACATTAAATTTTTATGTT+TGG | - | chr3.3:73425513-73425532 | MS.gene75420:intron | 15.0% |
| !!! | TAAATTAAATCCTAACATTT+TGG | - | chr3.3:73426677-73426696 | MS.gene75420:intron | 15.0% |
| !!! | TTAGCTTTATTAATTTTATG+GGG | + | chr3.3:73424644-73424663 | None:intergenic | 15.0% |
| !!! | TTTGATATTTGATTTTTAAG+TGG | + | chr3.3:73426467-73426486 | None:intergenic | 15.0% |
| !! | AAATACTTCTTCAAAGAAAA+AGG | - | chr3.3:73426995-73427014 | MS.gene75420:CDS | 20.0% |
| !! | AACTATTCAAAATACATACA+AGG | - | chr3.3:73426204-73426223 | MS.gene75420:intron | 20.0% |
| !! | ACAAAAAAAGAATAGATACA+TGG | + | chr3.3:73426781-73426800 | None:intergenic | 20.0% |
| !! | ATACATGTTATATATGGATA+TGG | - | chr3.3:73424895-73424914 | MS.gene75420:intron | 20.0% |
| !! | ATGCAACAATTTAAAGATTT+GGG | + | chr3.3:73426337-73426356 | None:intergenic | 20.0% |
| !! | GAAAAAAGAATACAATTCAA+TGG | - | chr3.3:73425300-73425319 | MS.gene75420:intron | 20.0% |
| !! | GTACTACATATATATGATAA+TGG | - | chr3.3:73425101-73425120 | MS.gene75420:intron | 20.0% |
| !! | TGAATGAAAGTAATTTGATA+AGG | + | chr3.3:73424849-73424868 | None:intergenic | 20.0% |
| !!! | ACAATTCAAAAAGAAGTATA+AGG | - | chr3.3:73426124-73426143 | MS.gene75420:intron | 20.0% |
| !!! | AGATAGATTTAGTTCATATA+TGG | + | chr3.3:73426642-73426661 | None:intergenic | 20.0% |
| !!! | CAATTCAAAAAGAAGTATAA+GGG | - | chr3.3:73426125-73426144 | MS.gene75420:intron | 20.0% |
| !!! | GCTTAGCTTTATTAATTTTA+TGG | + | chr3.3:73424646-73424665 | None:intergenic | 20.0% |
| !!! | TATACTTCTTTTTGAATTGT+TGG | + | chr3.3:73426124-73426143 | None:intergenic | 20.0% |
| !!! | TCTCTTTTTTAAACTTGAAT+AGG | - | chr3.3:73425690-73425709 | MS.gene75420:intron | 20.0% |
| ! | AAATCAAGAATTGAGAAAGA+GGG | - | chr3.3:73426175-73426194 | MS.gene75420:intron | 25.0% |
| ! | AACAATTTAAAGATTTGGGA+GGG | + | chr3.3:73426333-73426352 | None:intergenic | 25.0% |
| ! | ACATTAATAGTATCAGCAAA+CGG | - | chr3.3:73427327-73427346 | MS.gene75420:CDS | 25.0% |
| ! | AGAAAGAGTAAGAAAGAAAA+AGG | - | chr3.3:73426702-73426721 | MS.gene75420:intron | 25.0% |
| ! | AGCATACATTAAATCAGATT+AGG | - | chr3.3:73425278-73425297 | MS.gene75420:intron | 25.0% |
| ! | ATGAAAGTAATTTGATAAGG+AGG | + | chr3.3:73424846-73424865 | None:intergenic | 25.0% |
| ! | CATATATGACTTATGATACA+TGG | - | chr3.3:73425188-73425207 | MS.gene75420:intron | 25.0% |
| ! | CATGCAACAATTTAAAGATT+TGG | + | chr3.3:73426338-73426357 | None:intergenic | 25.0% |
| ! | CATGGATCAAAACAATAATT+AGG | + | chr3.3:73425382-73425401 | None:intergenic | 25.0% |
| ! | TAAATCAAGAATTGAGAAAG+AGG | - | chr3.3:73426174-73426193 | MS.gene75420:intron | 25.0% |
| ! | TAACAATTTCAACAGTCTAA+AGG | + | chr3.3:73424787-73424806 | None:intergenic | 25.0% |
| ! | TAATATAGAAGACTTTGTTG+AGG | + | chr3.3:73424374-73424393 | None:intergenic | 25.0% |
| ! | TAATTAATTGTAACTACCCA+AGG | + | chr3.3:73426551-73426570 | None:intergenic | 25.0% |
| ! | TCAAGTTTAAAAAAGAGAGA+GGG | + | chr3.3:73425688-73425707 | None:intergenic | 25.0% |
| ! | TCCTAATAATTGAGATTGTA+CGG | + | chr3.3:73424166-73424185 | None:intergenic | 25.0% |
| ! | TCTCCTATGTCTAATAAAAT+TGG | + | chr3.3:73426081-73426100 | None:intergenic | 25.0% |
| ! | TGATTTACTTAAAAGAGTCA+AGG | - | chr3.3:73425624-73425643 | MS.gene75420:intron | 25.0% |
| ! | TGGAATAAAAATCACTGAAA+TGG | + | chr3.3:73426377-73426396 | None:intergenic | 25.0% |
| !! | AAATCTCTCTTTTGTGAAAA+AGG | - | chr3.3:73425457-73425476 | MS.gene75420:intron | 25.0% |
| !! | AACAACTTAATTTGGCTAAT+AGG | - | chr3.3:73427108-73427127 | MS.gene75420:intron | 25.0% |
| !! | AACTATCTTGAAAACTTTTG+AGG | + | chr3.3:73424471-73424490 | None:intergenic | 25.0% |
| !! | AATTAATTTTACTTCAAGGC+TGG | - | chr3.3:73425822-73425841 | MS.gene75420:CDS | 25.0% |
| !! | AGAATTTTGTGTACTGAATT+TGG | - | chr3.3:73424230-73424249 | MS.gene75420:CDS | 25.0% |
| !! | CATCCAATTTTATTAGACAT+AGG | - | chr3.3:73426075-73426094 | MS.gene75420:intron | 25.0% |
| !! | CCTCTAAAAAAAATACAGTT+AGG | - | chr3.3:73424961-73424980 | MS.gene75420:intron | 25.0% |
| !! | GGAATTATATATGTTGATGA+AGG | + | chr3.3:73424943-73424962 | None:intergenic | 25.0% |
| !! | TGTGACTTTAAAGATAGTTA+CGG | - | chr3.3:73425942-73425961 | MS.gene75420:intron | 25.0% |
| !! | TTCAAGTTTAAAAAAGAGAG+AGG | + | chr3.3:73425689-73425708 | None:intergenic | 25.0% |
| !!! | AAGAATTTTCAAGGGATTTT+AGG | + | chr3.3:73427211-73427230 | None:intergenic | 25.0% |
| !!! | AGCAAATATACCTTTTTTTC+TGG | + | chr3.3:73424534-73424553 | None:intergenic | 25.0% |
| !!! | ATGTTGATGAAGGTAATTTT+TGG | + | chr3.3:73424933-73424952 | None:intergenic | 25.0% |
| !!! | CCTAACTGTATTTTTTTTAG+AGG | + | chr3.3:73424964-73424983 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGTCCAGAAAAAA+AGG | - | chr3.3:73424521-73424540 | MS.gene75420:CDS | 25.0% |
| !!! | TTGATTTAGAGTCTTTGTTT+TGG | + | chr3.3:73426162-73426181 | None:intergenic | 25.0% |
| !!! | TTGGTTAAGTAATTGTTTTG+TGG | - | chr3.3:73424249-73424268 | MS.gene75420:CDS | 25.0% |
| AAAAAAGAGAGAGGGAATTT+AGG | + | chr3.3:73425680-73425699 | None:intergenic | 30.0% | |
| AAAAAGAGAGAGGGAATTTA+GGG | + | chr3.3:73425679-73425698 | None:intergenic | 30.0% | |
| ACTTACATGCTAATTCTAGA+AGG | + | chr3.3:73426902-73426921 | None:intergenic | 30.0% | |
| AGATTGTACGGAAAAAATGT+TGG | + | chr3.3:73424154-73424173 | None:intergenic | 30.0% | |
| ATGATGAAACATGAGGTTAT+GGG | + | chr3.3:73426525-73426544 | None:intergenic | 30.0% | |
| CAAATAATAACACTCCAACT+AGG | - | chr3.3:73426439-73426458 | MS.gene75420:intron | 30.0% | |
| CAACAATTTAAAGATTTGGG+AGG | + | chr3.3:73426334-73426353 | None:intergenic | 30.0% | |
| TAAACCAAAGCGACTTTATA+TGG | - | chr3.3:73425009-73425028 | MS.gene75420:intron | 30.0% | |
| TATGATGAAACATGAGGTTA+TGG | + | chr3.3:73426526-73426545 | None:intergenic | 30.0% | |
| TCCGTACAATCTCAATTATT+AGG | - | chr3.3:73424162-73424181 | MS.gene75420:CDS | 30.0% | |
| TCCTAACTAAGAAAGGAAAA+AGG | + | chr3.3:73424723-73424742 | None:intergenic | 30.0% | |
| TCTTAAGTCCTAACTAAGAA+AGG | + | chr3.3:73424730-73424749 | None:intergenic | 30.0% | |
| TTAGAAGAAAAAAACGCAGA+AGG | + | chr3.3:73424759-73424778 | None:intergenic | 30.0% | |
| TTAGTAGTATTATGCTGAGT+GGG | - | chr3.3:73424804-73424823 | MS.gene75420:intron | 30.0% | |
| TTTGTGAAAAAGGATACGTA+CGG | - | chr3.3:73425467-73425486 | MS.gene75420:intron | 30.0% | |
| ! | ATTGATGCAGCATTAGATTT+TGG | + | chr3.3:73427049-73427068 | None:intergenic | 30.0% |
| ! | CTCATCAGAAGAATTTTCAA+GGG | + | chr3.3:73427219-73427238 | None:intergenic | 30.0% |
| ! | TAGATGATAGTGTCATTGAT+AGG | - | chr3.3:73424076-73424095 | MS.gene75420:CDS | 30.0% |
| ! | TAGATGTAATTTTGTCGACA+AGG | + | chr3.3:73426490-73426509 | None:intergenic | 30.0% |
| ! | TCCTTTTTCCTTTCTTAGTT+AGG | - | chr3.3:73424719-73424738 | MS.gene75420:intron | 30.0% |
| ! | TGATTTTTATTCCACGACAA+AGG | - | chr3.3:73426383-73426402 | MS.gene75420:intron | 30.0% |
| ! | TTTTTCCTCAAAGAACTTGA+AGG | + | chr3.3:73426295-73426314 | None:intergenic | 30.0% |
| !! | AGTTTAATTTTCGCATCTTG+TGG | - | chr3.3:73425882-73425901 | MS.gene75420:intron | 30.0% |
| !! | GATAAGGCTTTGAAATATCT+TGG | - | chr3.3:73424316-73424335 | MS.gene75420:intron | 30.0% |
| !! | TATCTTGAAAACTTTTGAGG+AGG | + | chr3.3:73424468-73424487 | None:intergenic | 30.0% |
| !! | TTATTTTTCATCCTTTGTCG+TGG | + | chr3.3:73426397-73426416 | None:intergenic | 30.0% |
| !!! | ATTTAGAGTCTTTGTTTTGG+TGG | + | chr3.3:73426159-73426178 | None:intergenic | 30.0% |
| !!! | ATTTTTAAGTGGATCCTAGT+TGG | + | chr3.3:73426456-73426475 | None:intergenic | 30.0% |
| !!! | TTTAGAGTCTTTGTTTTGGT+GGG | + | chr3.3:73426158-73426177 | None:intergenic | 30.0% |
| AAAGAAAATTGCTTACGAGC+AGG | - | chr3.3:73426036-73426055 | MS.gene75420:intron | 35.0% | |
| AACTCCATATAAAGTCGCTT+TGG | + | chr3.3:73425016-73425035 | None:intergenic | 35.0% | |
| AAGGTGTATGATGAAACATG+AGG | + | chr3.3:73426532-73426551 | None:intergenic | 35.0% | |
| AGATCAATGCCCAAAATGAA+AGG | - | chr3.3:73427377-73427396 | MS.gene75420:CDS | 35.0% | |
| AGTCAACACGATAAAATGGA+TGG | + | chr3.3:73424695-73424714 | None:intergenic | 35.0% | |
| CAAGAATATAGTGTCTGCTA+TGG | - | chr3.3:73425411-73425430 | MS.gene75420:intron | 35.0% | |
| CATGTTTCATCATACACCTT+GGG | - | chr3.3:73426532-73426551 | MS.gene75420:intron | 35.0% | |
| CTCTTTCTACCCAAAATGTT+AGG | + | chr3.3:73426690-73426709 | None:intergenic | 35.0% | |
| CTTAGAGATTCTTCATGCAA+AGG | - | chr3.3:73424117-73424136 | MS.gene75420:CDS | 35.0% | |
| GATCAATGCCCAAAATGAAA+GGG | - | chr3.3:73427378-73427397 | MS.gene75420:CDS | 35.0% | |
| GCTTAGTCAACACGATAAAA+TGG | + | chr3.3:73424699-73424718 | None:intergenic | 35.0% | |
| GTTAGTAGTATTATGCTGAG+TGG | - | chr3.3:73424803-73424822 | MS.gene75420:intron | 35.0% | |
| TAATAGTATCAGCAAACGGA+AGG | - | chr3.3:73427331-73427350 | MS.gene75420:CDS | 35.0% | |
| TAATTTGGCTAATAGGTGCT+TGG | - | chr3.3:73427115-73427134 | MS.gene75420:intron | 35.0% | |
| TAGTAGTATTATGCTGAGTG+GGG | - | chr3.3:73424805-73424824 | MS.gene75420:intron | 35.0% | |
| TCATGTTTCATCATACACCT+TGG | - | chr3.3:73426531-73426550 | MS.gene75420:intron | 35.0% | |
| TGCAAATCTGATAACTGAAG+AGG | + | chr3.3:73427170-73427189 | None:intergenic | 35.0% | |
| TGTTAAAACAGTTACCTGTG+TGG | - | chr3.3:73424285-73424304 | MS.gene75420:intron | 35.0% | |
| TTCTTCATGCAAAGGTAGTT+AGG | - | chr3.3:73424125-73424144 | MS.gene75420:CDS | 35.0% | |
| ! | ATCATGTGCACTATTTTGCA+GGG | - | chr3.3:73425547-73425566 | MS.gene75420:intron | 35.0% |
| ! | GCTCATCAGAAGAATTTTCA+AGG | + | chr3.3:73427220-73427239 | None:intergenic | 35.0% |
| !! | TCAAGGGATTTTAGGAAGTA+TGG | + | chr3.3:73427203-73427222 | None:intergenic | 35.0% |
| !! | TGTTCTTGCTTCAAGTTTTG+TGG | + | chr3.3:73424039-73424058 | None:intergenic | 35.0% |
| AATGCCCAAAATGAAAGGGT+TGG | - | chr3.3:73427382-73427401 | MS.gene75420:CDS | 40.0% | |
| AGGGAATTTAGGGAAGATGT+CGG | + | chr3.3:73425669-73425688 | None:intergenic | 40.0% | |
| AGGTCAAAGTAACCTCTTAG+AGG | + | chr3.3:73426257-73426276 | None:intergenic | 40.0% | |
| AGTTCACTAGCACTTTGCAA+AGG | - | chr3.3:73425791-73425810 | MS.gene75420:CDS | 40.0% | |
| ATATTCTTGCGAGGAGATCA+TGG | + | chr3.3:73425400-73425419 | None:intergenic | 40.0% | |
| ATGACAGATTATTGCATGCC+TGG | - | chr3.3:73425589-73425608 | MS.gene75420:intron | 40.0% | |
| ATTACCTCTTGTAGCTGCAA+TGG | + | chr3.3:73424424-73424443 | None:intergenic | 40.0% | |
| CTAATAGGTGCTTGGAAGAA+GGG | - | chr3.3:73427123-73427142 | MS.gene75420:intron | 40.0% | |
| GCAAGAACACTTTCATGTGT+TGG | - | chr3.3:73424050-73424069 | MS.gene75420:CDS | 40.0% | |
| GGAGGATCTGAAAGAGAAAT+TGG | + | chr3.3:73425040-73425059 | None:intergenic | 40.0% | |
| TAATAGGTGCTTGGAAGAAG+GGG | - | chr3.3:73427124-73427143 | MS.gene75420:intron | 40.0% | |
| TCAAAGTAACCTCTTAGAGG+TGG | + | chr3.3:73426254-73426273 | None:intergenic | 40.0% | |
| TCTGATGACATAACCACAAC+TGG | + | chr3.3:73426872-73426891 | None:intergenic | 40.0% | |
| TGACAGATTATTGCATGCCT+GGG | - | chr3.3:73425590-73425609 | MS.gene75420:intron | 40.0% | |
| TGAGTGGGGATATTGAACTT+TGG | - | chr3.3:73424819-73424838 | MS.gene75420:intron | 40.0% | |
| TTCAGATCCTCCATTCATCT+AGG | - | chr3.3:73425048-73425067 | MS.gene75420:intron | 40.0% | |
| TTCCTCAAAGAACTTGAAGG+TGG | + | chr3.3:73426292-73426311 | None:intergenic | 40.0% | |
| TTGGAAAGATGTTCCAGTTG+TGG | - | chr3.3:73426856-73426875 | MS.gene75420:intron | 40.0% | |
| ! | CATCATGTGCACTATTTTGC+AGG | - | chr3.3:73425546-73425565 | MS.gene75420:intron | 40.0% |
| ! | TTCCACCTTCAAGTTCTTTG+AGG | - | chr3.3:73426287-73426306 | MS.gene75420:intron | 40.0% |
| ! | TTGATAGGATGCTTCTAGAG+AGG | - | chr3.3:73424091-73424110 | MS.gene75420:CDS | 40.0% |
| !! | CTTGAAAACTTTTGAGGAGG+AGG | + | chr3.3:73424465-73424484 | None:intergenic | 40.0% |
| !!! | ATTTTGGGCATTGATCTCTC+TGG | + | chr3.3:73427374-73427393 | None:intergenic | 40.0% |
| AAATCATAGCCACTCATCCC+AGG | + | chr3.3:73425610-73425629 | None:intergenic | 45.0% | |
| ACAACCATTGCAGCTACAAG+AGG | - | chr3.3:73424417-73424436 | MS.gene75420:intron | 45.0% | |
| AGCTAGAAACCACCTCTAAG+AGG | - | chr3.3:73426242-73426261 | MS.gene75420:intron | 45.0% | |
| AGCTGCAATGGTTGTTGAAG+AGG | + | chr3.3:73424412-73424431 | None:intergenic | 45.0% | |
| GAAGGTGGAAGAGATTGTAG+AGG | + | chr3.3:73426277-73426296 | None:intergenic | 45.0% | |
| GCAGACACTATATTCTTGCG+AGG | + | chr3.3:73425409-73425428 | None:intergenic | 45.0% | |
| GCTAATAGGTGCTTGGAAGA+AGG | - | chr3.3:73427122-73427141 | MS.gene75420:intron | 45.0% | |
| GGAATTTAGGGAAGATGTCG+GGG | + | chr3.3:73425667-73425686 | None:intergenic | 45.0% | |
| GGGAATTTAGGGAAGATGTC+GGG | + | chr3.3:73425668-73425687 | None:intergenic | 45.0% | |
| GTACGTACAGTGCAGTGAAA+AGG | + | chr3.3:73425358-73425377 | None:intergenic | 45.0% | |
| TGCAATGGTTGTTGAAGAGG+AGG | + | chr3.3:73424409-73424428 | None:intergenic | 45.0% | |
| ! | ACCGCCAACCCTTTCATTTT+GGG | + | chr3.3:73427389-73427408 | None:intergenic | 45.0% |
| !!! | TATTTTATATATTTTAGTTA+CGG | - | chr3.3:73425968-73425987 | MS.gene75420:intron | 5.0% |
| !!! | TTTATTTTATATATTTTGAA+TGG | - | chr3.3:73425992-73426011 | MS.gene75420:intron | 5.0% |
| ACACTGCTTACTGCACTGCA+GGG | - | chr3.3:73426827-73426846 | MS.gene75420:intron | 50.0% | |
| ACAGTTACCTGTGTGGACTC+TGG | - | chr3.3:73424292-73424311 | MS.gene75420:intron | 50.0% | |
| CTTATCTCCAGAGTCCACAC+AGG | + | chr3.3:73424302-73424321 | None:intergenic | 50.0% | |
| GCCCAAAATGAAAGGGTTGG+CGG | - | chr3.3:73427385-73427404 | MS.gene75420:CDS | 50.0% | |
| TATTGCATGCCTGGGATGAG+TGG | - | chr3.3:73425598-73425617 | MS.gene75420:intron | 50.0% | |
| TCCTCCATTCATCTAGGTCG+CGG | - | chr3.3:73425054-73425073 | MS.gene75420:intron | 50.0% | |
| TTCCACTACCACCACAGACT+CGG | - | chr3.3:73427256-73427275 | MS.gene75420:intron | 50.0% | |
| ! | ATTGATCTCTCTGGAGGCTC+AGG | + | chr3.3:73427365-73427384 | None:intergenic | 50.0% |
| ! | CAAAATGAAAGGGTTGGCGG+TGG | - | chr3.3:73427388-73427407 | MS.gene75420:CDS | 50.0% |
| ! | CACCGCCAACCCTTTCATTT+TGG | + | chr3.3:73427390-73427409 | None:intergenic | 50.0% |
| ! | CTGTGTGGACTCTGGAGATA+AGG | - | chr3.3:73424300-73424319 | MS.gene75420:intron | 50.0% |
| !! | TTGGGCATTGATCTCTCTGG+AGG | + | chr3.3:73427371-73427390 | None:intergenic | 50.0% |
| CTGCACTGCAGGGATCTTCT+TGG | - | chr3.3:73426837-73426856 | MS.gene75420:intron | 55.0% | |
| GACACTGCTTACTGCACTGC+AGG | - | chr3.3:73426826-73426845 | MS.gene75420:intron | 55.0% | |
| GCATCCGCGACCTAGATGAA+TGG | + | chr3.3:73425061-73425080 | None:intergenic | 55.0% | |
| TCCGCGACCTAGATGAATGG+AGG | + | chr3.3:73425058-73425077 | None:intergenic | 55.0% | |
| ! | AATGAAAGGGTTGGCGGTGG+TGG | - | chr3.3:73427391-73427410 | MS.gene75420:CDS | 55.0% |
| GTCCGAGTCTGTGGTGGTAG+TGG | + | chr3.3:73427261-73427280 | None:intergenic | 60.0% | |
| GTTGTCGTCGTCCGAGTCTG+TGG | + | chr3.3:73427270-73427289 | None:intergenic | 60.0% | |
| ! | CTCTGGAGGCTCAGGAGACA+TGG | + | chr3.3:73427357-73427376 | None:intergenic | 60.0% |
| GTCGTCGTCCGAGTCTGTGG+TGG | + | chr3.3:73427267-73427286 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 73423997 | 73427418 | 73423997 | ID=MS.gene75420 |
| chr3.3 | mRNA | 73423997 | 73427418 | 73423997 | ID=MS.gene75420.t1;Parent=MS.gene75420 |
| chr3.3 | exon | 73427277 | 73427418 | 73427277 | ID=MS.gene75420.t1.exon1;Parent=MS.gene75420.t1 |
| chr3.3 | CDS | 73427277 | 73427418 | 73427277 | ID=cds.MS.gene75420.t1;Parent=MS.gene75420.t1 |
| chr3.3 | exon | 73426977 | 73427119 | 73426977 | ID=MS.gene75420.t1.exon2;Parent=MS.gene75420.t1 |
| chr3.3 | CDS | 73426977 | 73427119 | 73426977 | ID=cds.MS.gene75420.t1;Parent=MS.gene75420.t1 |
| chr3.3 | exon | 73425770 | 73425847 | 73425770 | ID=MS.gene75420.t1.exon3;Parent=MS.gene75420.t1 |
| chr3.3 | CDS | 73425770 | 73425847 | 73425770 | ID=cds.MS.gene75420.t1;Parent=MS.gene75420.t1 |
| chr3.3 | exon | 73424500 | 73424567 | 73424500 | ID=MS.gene75420.t1.exon4;Parent=MS.gene75420.t1 |
| chr3.3 | CDS | 73424500 | 73424567 | 73424500 | ID=cds.MS.gene75420.t1;Parent=MS.gene75420.t1 |
| chr3.3 | exon | 73423997 | 73424285 | 73423997 | ID=MS.gene75420.t1.exon5;Parent=MS.gene75420.t1 |
| chr3.3 | CDS | 73423997 | 73424285 | 73423997 | ID=cds.MS.gene75420.t1;Parent=MS.gene75420.t1 |
| Gene Sequence |
| Protein sequence |
