Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75465.t1 | XP_003601978.1 | 93.4 | 578 | 36 | 2 | 1 | 577 | 1 | 577 | 4.00E-300 | 1040 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75465.t1 | Q9MAH1 | 43.6 | 399 | 217 | 3 | 182 | 576 | 191 | 585 | 5.1e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75465.t1 | G7J3U4 | 93.4 | 578 | 36 | 2 | 1 | 577 | 1 | 577 | 2.9e-300 | 1040.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021587 | MS.gene75465 | PPI |
| MS.gene75465 | MS.gene54083 | PPI |
| MS.gene75465 | MS.gene015906 | PPI |
| MS.gene75465 | MS.gene86308 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75465.t1 | MTR_3g087480 | 96.194 | 578 | 20 | 2 | 1 | 577 | 1 | 577 | 0.0 | 1144 |
| MS.gene75465.t1 | MTR_3g074230 | 58.056 | 360 | 144 | 2 | 220 | 576 | 189 | 544 | 6.99e-143 | 427 |
| MS.gene75465.t1 | MTR_3g074230 | 58.056 | 360 | 144 | 2 | 220 | 576 | 189 | 544 | 2.10e-142 | 427 |
| MS.gene75465.t1 | MTR_5g063200 | 52.723 | 404 | 177 | 3 | 173 | 576 | 175 | 564 | 3.60e-141 | 424 |
| MS.gene75465.t1 | MTR_2g078020 | 48.267 | 375 | 187 | 1 | 209 | 576 | 208 | 582 | 5.82e-123 | 376 |
| MS.gene75465.t1 | MTR_2g078020 | 48.267 | 375 | 187 | 1 | 209 | 576 | 208 | 582 | 2.03e-122 | 377 |
| MS.gene75465.t1 | MTR_6g013475 | 79.231 | 130 | 23 | 2 | 88 | 216 | 3 | 129 | 5.32e-62 | 201 |
| MS.gene75465.t1 | MTR_4g076240 | 25.753 | 365 | 210 | 12 | 223 | 531 | 527 | 886 | 2.09e-21 | 99.4 |
| MS.gene75465.t1 | MTR_2g090135 | 34.921 | 126 | 73 | 2 | 459 | 575 | 101 | 226 | 1.43e-15 | 77.4 |
| MS.gene75465.t1 | MTR_7g090940 | 25.459 | 381 | 225 | 12 | 224 | 551 | 658 | 1032 | 1.96e-15 | 80.5 |
| MS.gene75465.t1 | MTR_7g059150 | 34.959 | 123 | 70 | 2 | 443 | 555 | 79 | 201 | 2.24e-14 | 73.9 |
| MS.gene75465.t1 | MTR_1g030300 | 31.034 | 145 | 98 | 1 | 204 | 348 | 165 | 307 | 1.94e-13 | 73.2 |
| MS.gene75465.t1 | MTR_3g452710 | 33.945 | 109 | 70 | 1 | 223 | 329 | 12 | 120 | 1.09e-12 | 71.2 |
| MS.gene75465.t1 | MTR_2g090135 | 37.255 | 102 | 56 | 2 | 459 | 552 | 101 | 202 | 1.54e-12 | 67.4 |
| MS.gene75465.t1 | MTR_3g452710 | 33.945 | 109 | 70 | 1 | 223 | 329 | 12 | 120 | 1.68e-12 | 70.1 |
| MS.gene75465.t1 | MTR_1g041435 | 28.571 | 105 | 75 | 0 | 460 | 564 | 15 | 119 | 4.04e-12 | 68.2 |
| MS.gene75465.t1 | MTR_1g084100 | 33.929 | 112 | 73 | 1 | 463 | 574 | 98 | 208 | 1.10e-11 | 67.8 |
| MS.gene75465.t1 | MTR_5g012030 | 32.673 | 101 | 68 | 0 | 460 | 560 | 396 | 496 | 1.29e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75465.t1 | AT5G65160 | 54.758 | 599 | 223 | 10 | 7 | 576 | 11 | 590 | 0.0 | 629 |
| MS.gene75465.t1 | AT5G10090 | 60.000 | 475 | 180 | 3 | 105 | 576 | 124 | 591 | 0.0 | 581 |
| MS.gene75465.t1 | AT1G78120 | 54.247 | 365 | 166 | 1 | 214 | 577 | 151 | 515 | 1.42e-127 | 385 |
| MS.gene75465.t1 | AT2G42580 | 49.859 | 355 | 174 | 1 | 221 | 571 | 219 | 573 | 5.87e-112 | 349 |
| MS.gene75465.t1 | AT1G78120 | 53.846 | 325 | 149 | 1 | 214 | 537 | 151 | 475 | 1.56e-108 | 334 |
| MS.gene75465.t1 | AT1G53300 | 46.537 | 361 | 187 | 3 | 221 | 576 | 226 | 585 | 1.49e-105 | 333 |
| MS.gene75465.t1 | AT3G58620 | 45.856 | 362 | 192 | 2 | 214 | 571 | 203 | 564 | 2.09e-103 | 326 |
| MS.gene75465.t1 | AT3G14950 | 44.722 | 360 | 195 | 1 | 221 | 576 | 257 | 616 | 2.41e-103 | 328 |
| MS.gene75465.t1 | AT3G58620 | 45.856 | 362 | 192 | 2 | 214 | 571 | 203 | 564 | 2.84e-103 | 327 |
| MS.gene75465.t1 | AT2G41520 | 25.587 | 426 | 241 | 17 | 217 | 575 | 545 | 961 | 7.58e-22 | 100 |
| MS.gene75465.t1 | AT2G41520 | 25.587 | 426 | 241 | 17 | 217 | 575 | 445 | 861 | 7.98e-22 | 100 |
| MS.gene75465.t1 | AT5G12430 | 26.371 | 383 | 229 | 12 | 223 | 556 | 609 | 987 | 1.87e-21 | 99.8 |
| MS.gene75465.t1 | AT2G41520 | 25.436 | 401 | 242 | 15 | 217 | 575 | 545 | 930 | 2.78e-16 | 83.2 |
| MS.gene75465.t1 | AT4G12400 | 25.140 | 358 | 236 | 11 | 223 | 568 | 3 | 340 | 4.99e-15 | 78.6 |
| MS.gene75465.t1 | AT4G12400 | 31.683 | 101 | 69 | 0 | 460 | 560 | 373 | 473 | 9.79e-11 | 65.1 |
| MS.gene75465.t1 | AT4G12400 | 25.140 | 358 | 236 | 11 | 223 | 568 | 3 | 340 | 5.15e-15 | 78.6 |
| MS.gene75465.t1 | AT1G04190 | 30.769 | 130 | 89 | 1 | 446 | 575 | 5 | 133 | 5.15e-13 | 70.9 |
| MS.gene75465.t1 | AT3G04240 | 25.143 | 350 | 215 | 10 | 234 | 556 | 167 | 496 | 8.93e-13 | 72.0 |
| MS.gene75465.t1 | AT4G30480 | 32.540 | 126 | 76 | 2 | 459 | 575 | 108 | 233 | 1.76e-12 | 68.6 |
| MS.gene75465.t1 | AT4G08320 | 34.694 | 98 | 64 | 0 | 213 | 310 | 166 | 263 | 4.86e-12 | 68.6 |
| MS.gene75465.t1 | AT4G08320 | 34.694 | 98 | 64 | 0 | 213 | 310 | 166 | 263 | 5.53e-12 | 68.6 |
| MS.gene75465.t1 | AT4G30480 | 36.559 | 93 | 52 | 1 | 459 | 544 | 108 | 200 | 3.91e-11 | 63.2 |
| MS.gene75465.t1 | AT1G56440 | 33.898 | 118 | 77 | 1 | 457 | 574 | 75 | 191 | 4.93e-11 | 65.5 |
| MS.gene75465.t1 | AT1G56440 | 33.898 | 118 | 77 | 1 | 457 | 574 | 85 | 201 | 5.01e-11 | 65.9 |
Find 113 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATGTTGTATGGAAATTT+AGG | 0.096719 | 3.3:+72882509 | MS.gene75465:CDS |
| ACCAATTGGTCCAAAGAATT+TGG | 0.157579 | 3.3:-72883706 | None:intergenic |
| AAAGAAGCTGTTGGTATTTC+AGG | 0.164915 | 3.3:+72882410 | MS.gene75465:CDS |
| GACGATTGTACCAAATTCTT+TGG | 0.195700 | 3.3:+72883696 | MS.gene75465:CDS |
| TTGTTTGCCATCTTGTTGTT+AGG | 0.206579 | 3.3:-72883921 | None:intergenic |
| CTATTTAATTCCTCATCTTC+TGG | 0.221444 | 3.3:-72884370 | None:intergenic |
| CTGCTTGTTTATAATGATAA+AGG | 0.245665 | 3.3:-72883147 | None:intergenic |
| GGATTAATGACAACAGTATT+TGG | 0.247419 | 3.3:+72882116 | MS.gene75465:CDS |
| ATGGAAATTTAGGGAATATT+AGG | 0.268159 | 3.3:+72882519 | MS.gene75465:CDS |
| GAACCACCACGTCGTCGTTT+TGG | 0.274837 | 3.3:-72882200 | None:intergenic |
| CTATCATCCGGTGCAGATTC+TGG | 0.287174 | 3.3:+72883292 | MS.gene75465:CDS |
| GAAATACCAACAGCTTCTTT+TGG | 0.293308 | 3.3:-72882407 | None:intergenic |
| CAGATTTGATGATGCTTTAG+AGG | 0.308396 | 3.3:+72883872 | MS.gene75465:intron |
| TCCAGAGCAGTTGAAAATAA+TGG | 0.313493 | 3.3:+72882742 | MS.gene75465:CDS |
| TTATGTTGTATGGAAATTTA+GGG | 0.317802 | 3.3:+72882510 | MS.gene75465:CDS |
| CTTCAACTGCTTTCTCCAAT+TGG | 0.321511 | 3.3:-72884112 | None:intergenic |
| TTTGGATCATTAACGTTGTT+TGG | 0.329256 | 3.3:-72882182 | None:intergenic |
| CCAGAGCAGTTGAAAATAAT+GGG | 0.331941 | 3.3:+72882743 | MS.gene75465:CDS |
| AGCTCTTCTCAACCTTGCTT+TGG | 0.339234 | 3.3:-72884171 | None:intergenic |
| ACCAAATTCTTTGGACCAAT+TGG | 0.343365 | 3.3:+72883705 | MS.gene75465:CDS |
| AATAAGAGTACTACTTCCTT+TGG | 0.349666 | 3.3:-72882468 | None:intergenic |
| GATTAGGAAATTTACACTTT+AGG | 0.360455 | 3.3:+72882963 | MS.gene75465:CDS |
| ATCATTAACGTTGTTTGGTA+TGG | 0.365292 | 3.3:-72882177 | None:intergenic |
| AACAAATTTGAATTACCAAT+TGG | 0.367828 | 3.3:-72883720 | None:intergenic |
| GATGAATTTGAAACCTTTGA+TGG | 0.375854 | 3.3:-72882347 | None:intergenic |
| TGTTTGCCATCTTGTTGTTA+GGG | 0.377926 | 3.3:-72883920 | None:intergenic |
| CAAAGTAAAATAGAGTTATA+TGG | 0.380890 | 3.3:-72884059 | None:intergenic |
| TGCACCGGATGATAGAGTTT+TGG | 0.382756 | 3.3:-72883284 | None:intergenic |
| ACTCTTATTCGCGCTTCGTC+TGG | 0.385363 | 3.3:+72882482 | MS.gene75465:CDS |
| GGAATTAAATAGAGCATTGT+TGG | 0.387923 | 3.3:+72884381 | MS.gene75465:CDS |
| TCCGAGGCTTGTGTTGCATA+TGG | 0.389783 | 3.3:+72884017 | MS.gene75465:CDS |
| TTCACTTTAGCAACCTCATC+AGG | 0.390431 | 3.3:-72883184 | None:intergenic |
| TGCTTGTTTATAATGATAAA+GGG | 0.398764 | 3.3:-72883146 | None:intergenic |
| AACCTTGCTTTGGTGTAAGA+TGG | 0.401622 | 3.3:-72884161 | None:intergenic |
| TCTGGCAATGTTATGTTGTA+TGG | 0.402824 | 3.3:+72882500 | MS.gene75465:CDS |
| CATAGAGCTCATCATCGATT+AGG | 0.403953 | 3.3:+72882947 | MS.gene75465:CDS |
| CACGTGGTGGTTCACTTTGT+AGG | 0.410155 | 3.3:+72882699 | MS.gene75465:CDS |
| TAGATCAAAACTCGGCCAAT+TGG | 0.421549 | 3.3:+72884097 | MS.gene75465:CDS |
| ATGGATTATAGATGGAAAGA+TGG | 0.427946 | 3.3:+72884305 | MS.gene75465:intron |
| TAGAGCATTGTTGGAGGCTC+GGG | 0.429040 | 3.3:+72884390 | MS.gene75465:CDS |
| TTCTACCTTCAACTTGTTGG+TGG | 0.437992 | 3.3:-72882672 | None:intergenic |
| TGCACTGAGGCTCGCAGGTT+AGG | 0.440976 | 3.3:+72883232 | MS.gene75465:CDS |
| TTCAAATTCATCAACTACTC+AGG | 0.449757 | 3.3:+72882358 | MS.gene75465:CDS |
| CTGCTTTAACTGCTCTTGGT+AGG | 0.450208 | 3.3:+72882870 | MS.gene75465:CDS |
| ATTTCGCCAGAGAGAAAATC+AGG | 0.454949 | 3.3:+72882089 | MS.gene75465:CDS |
| AGTGCTGCTTTAACTGCTCT+TGG | 0.456396 | 3.3:+72882866 | MS.gene75465:CDS |
| GTGACAGCTGCAAGAGGAAG+AGG | 0.456849 | 3.3:+72883966 | MS.gene75465:CDS |
| TTGAAGCTGTGTTTGAATGT+AGG | 0.462334 | 3.3:+72882897 | MS.gene75465:CDS |
| TGGATTATAGATGGAAAGAT+GGG | 0.467551 | 3.3:+72884306 | MS.gene75465:intron |
| TCATTAACGTTGTTTGGTAT+GGG | 0.474787 | 3.3:-72882176 | None:intergenic |
| ATCATCCACCAACAAGTTGA+AGG | 0.475755 | 3.3:+72882667 | MS.gene75465:CDS |
| AGGCTCGCAGGTTAGGAGAT+TGG | 0.476698 | 3.3:+72883239 | MS.gene75465:CDS |
| GAAAGATGGGAAGCTTCAAT+AGG | 0.478223 | 3.3:+72884319 | MS.gene75465:CDS |
| ATAGAGCATTGTTGGAGGCT+CGG | 0.486677 | 3.3:+72884389 | MS.gene75465:CDS |
| ACGTGGTGGTTCACTTTGTA+GGG | 0.489232 | 3.3:+72882700 | MS.gene75465:CDS |
| ACCTTGCTTTGGTGTAAGAT+GGG | 0.490732 | 3.3:-72884160 | None:intergenic |
| AATGCAAATTCAAATGCAAA+AGG | 0.491684 | 3.3:+72882602 | MS.gene75465:CDS |
| TAGGGCTATATCAACTAGAA+TGG | 0.493499 | 3.3:+72882718 | MS.gene75465:CDS |
| TGAAGCTGTGTTTGAATGTA+GGG | 0.506829 | 3.3:+72882898 | MS.gene75465:CDS |
| GTTGAAAATAATGGGGAATG+AGG | 0.512910 | 3.3:+72882751 | MS.gene75465:CDS |
| GGCAAACAAGGTGTTGAGAA+AGG | 0.512946 | 3.3:+72883935 | MS.gene75465:CDS |
| CAGATTAGGAGAAACGGATA+AGG | 0.517315 | 3.3:+72883123 | MS.gene75465:intron |
| ACCTCCAAAACTCTATCATC+CGG | 0.524405 | 3.3:+72883280 | MS.gene75465:CDS |
| TCCATATGCAACACAAGCCT+CGG | 0.527621 | 3.3:-72884018 | None:intergenic |
| ATTTGATGAACAAGAAGACT+TGG | 0.528008 | 3.3:-72882291 | None:intergenic |
| CTTTATCATTATAAACAAGC+AGG | 0.531498 | 3.3:+72883148 | MS.gene75465:CDS |
| TGCAATAGCTGCATCATACA+AGG | 0.535391 | 3.3:-72882807 | None:intergenic |
| CGGTGCAGATTCTGGTCCAC+AGG | 0.538291 | 3.3:+72883300 | MS.gene75465:CDS |
| TCAAATTCATCAACTACTCA+GGG | 0.541512 | 3.3:+72882359 | MS.gene75465:CDS |
| GTAAGTGCACTGAGGCTCGC+AGG | 0.542799 | 3.3:+72883227 | MS.gene75465:CDS |
| GCTTGTGTTGCATATGGAGA+AGG | 0.544027 | 3.3:+72884023 | MS.gene75465:CDS |
| GCTCAAGTTGATATAGCTGC+TGG | 0.549363 | 3.3:+72883753 | MS.gene75465:CDS |
| TGATTACAGATTAGGAGAAA+CGG | 0.553077 | 3.3:+72883117 | MS.gene75465:intron |
| AAGAGAGACACCAGAAGATG+AGG | 0.555582 | 3.3:+72884360 | MS.gene75465:CDS |
| AACGCCACGTGGACCATCAA+AGG | 0.559475 | 3.3:+72882334 | MS.gene75465:CDS |
| ATTAAATAGAGCATTGTTGG+AGG | 0.561915 | 3.3:+72884384 | MS.gene75465:CDS |
| ACTCAGGGGTATGTTAATCA+AGG | 0.567874 | 3.3:+72882374 | MS.gene75465:CDS |
| TGATGAGCTCTATGATAATG+AGG | 0.577068 | 3.3:-72882938 | None:intergenic |
| CCAGAGAGAAAATCAGGCTG+TGG | 0.577805 | 3.3:+72882095 | MS.gene75465:CDS |
| TAATAGTTATTCAAATGCAA+TGG | 0.579556 | 3.3:+72882556 | MS.gene75465:CDS |
| ACGACGTGGTGGTTCAAAAG+AGG | 0.580831 | 3.3:+72882208 | MS.gene75465:CDS |
| CTTGTGTTGCATATGGAGAA+GGG | 0.581028 | 3.3:+72884024 | MS.gene75465:CDS |
| AAGTTGATATAGCTGCTGGC+AGG | 0.584890 | 3.3:+72883757 | MS.gene75465:CDS |
| TAATGACAACAGTATTTGGA+AGG | 0.585909 | 3.3:+72882120 | MS.gene75465:CDS |
| TAACAACAAGATGGCAAACA+AGG | 0.586586 | 3.3:+72883923 | MS.gene75465:CDS |
| AAGAGCTGATTGTAATGCCA+AGG | 0.591062 | 3.3:+72884187 | MS.gene75465:CDS |
| CGAGCTGTGACAGCTGCAAG+AGG | 0.594817 | 3.3:+72883960 | MS.gene75465:CDS |
| ACTAGACCCTAACAACAAGA+TGG | 0.595527 | 3.3:+72883914 | MS.gene75465:CDS |
| GCAAATTCAAATGCAAAAGG+AGG | 0.597517 | 3.3:+72882605 | MS.gene75465:CDS |
| CAATCGTCAACATCAAAATG+AGG | 0.603192 | 3.3:-72883681 | None:intergenic |
| TGTCTGCATCTTGATGCCTA+CGG | 0.609966 | 3.3:-72883641 | None:intergenic |
| AGAGTTCCAAAAGAAGCTGT+TGG | 0.612914 | 3.3:+72882401 | MS.gene75465:CDS |
| TTATAAACAAGCAGGATCAG+AGG | 0.623703 | 3.3:+72883156 | MS.gene75465:CDS |
| GCCCATCTTACACCAAAGCA+AGG | 0.628552 | 3.3:+72884159 | MS.gene75465:CDS |
| AATTTAGGGAATATTAGGCA+AGG | 0.632462 | 3.3:+72882524 | MS.gene75465:CDS |
| GATCCAAAACGACGACGTGG+TGG | 0.632918 | 3.3:+72882197 | MS.gene75465:CDS |
| CTGTGGACCAGAATCTGCAC+CGG | 0.635581 | 3.3:-72883299 | None:intergenic |
| AGGGGTATGTTAATCAAGGT+AGG | 0.636580 | 3.3:+72882378 | MS.gene75465:CDS |
| AAGCGCTGATAAAACTCCGT+AGG | 0.646518 | 3.3:+72883625 | MS.gene75465:CDS |
| CAGAAAACGACAACGCCACG+TGG | 0.652747 | 3.3:+72882323 | MS.gene75465:CDS |
| ATCAGAGGCTGATCCTGATG+AGG | 0.654133 | 3.3:+72883171 | MS.gene75465:CDS |
| TGACAACAGTATTTGGAAGG+CGG | 0.657393 | 3.3:+72882123 | MS.gene75465:CDS |
| CAGAGCAGTTGAAAATAATG+GGG | 0.660016 | 3.3:+72882744 | MS.gene75465:CDS |
| GCAGCTTGTAGATCAAAACT+CGG | 0.660130 | 3.3:+72884089 | MS.gene75465:CDS |
| GAAACCTTTGATGGTCCACG+TGG | 0.673817 | 3.3:-72882338 | None:intergenic |
| CAAGGCATCGAAATTCTCCG+AGG | 0.675699 | 3.3:+72884001 | MS.gene75465:CDS |
| CAACTTAAGAAACAACGAGG+TGG | 0.710109 | 3.3:+72884415 | MS.gene75465:CDS |
| CAAATTCATCAACTACTCAG+GGG | 0.711670 | 3.3:+72882360 | MS.gene75465:CDS |
| AGCAGTTGAAGATTGTACTG+CGG | 0.725831 | 3.3:+72884124 | MS.gene75465:CDS |
| AATGATCCAAAACGACGACG+TGG | 0.732125 | 3.3:+72882194 | MS.gene75465:CDS |
| TCATTTAAGTAAGTGCACTG+AGG | 0.735333 | 3.3:+72883219 | MS.gene75465:CDS |
| TATGGGAGCAGAACCCACAG+AGG | 0.785471 | 3.3:-72882159 | None:intergenic |
| GCGCAACTTAAGAAACAACG+AGG | 0.792961 | 3.3:+72884412 | MS.gene75465:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAATATTTTAAATTGTT+GGG | + | chr3.3:72884238-72884257 | MS.gene75465:intron | 10.0% |
| !!! | TAATGAATATTTTAAATTGT+TGG | + | chr3.3:72884237-72884256 | MS.gene75465:intron | 10.0% |
| !! | AACAAATTTGAATTACCAAT+TGG | - | chr3.3:72883723-72883742 | None:intergenic | 20.0% |
| !! | AACACAATATTAAATGATTG+TGG | - | chr3.3:72883850-72883869 | None:intergenic | 20.0% |
| !! | AACTTGTATATTAATTACCT+TGG | - | chr3.3:72884207-72884226 | None:intergenic | 20.0% |
| !! | CAAAGTAAAATAGAGTTATA+TGG | - | chr3.3:72884062-72884081 | None:intergenic | 20.0% |
| !! | TAATAGTTATTCAAATGCAA+TGG | + | chr3.3:72882556-72882575 | MS.gene75465:CDS | 20.0% |
| !! | TGCTTGTTTATAATGATAAA+GGG | - | chr3.3:72883149-72883168 | None:intergenic | 20.0% |
| !! | TTATGTTGTATGGAAATTTA+GGG | + | chr3.3:72882510-72882529 | MS.gene75465:CDS | 20.0% |
| !! | TTGAAGATATGATGATATAT+AGG | - | chr3.3:72883347-72883366 | None:intergenic | 20.0% |
| !!! | AATTTGCATTTTCAAAATAC+TGG | - | chr3.3:72882592-72882611 | None:intergenic | 20.0% |
| !!! | TAGTTTATGATTTTGAATTG+TGG | + | chr3.3:72883376-72883395 | MS.gene75465:intron | 20.0% |
| ! | AATGATCATCAAAAATCCAA+AGG | + | chr3.3:72882452-72882471 | MS.gene75465:CDS | 25.0% |
| ! | AATGCAAATTCAAATGCAAA+AGG | + | chr3.3:72882602-72882621 | MS.gene75465:CDS | 25.0% |
| ! | AATGTTTATGCATTGTGAAA+TGG | + | chr3.3:72884286-72884305 | MS.gene75465:intron | 25.0% |
| ! | ATGGAAATTTAGGGAATATT+AGG | + | chr3.3:72882519-72882538 | MS.gene75465:CDS | 25.0% |
| ! | CTGCTTGTTTATAATGATAA+AGG | - | chr3.3:72883150-72883169 | None:intergenic | 25.0% |
| ! | CTTGATATTGTAGTAAATTG+TGG | + | chr3.3:72883430-72883449 | MS.gene75465:intron | 25.0% |
| ! | CTTTATCATTATAAACAAGC+AGG | + | chr3.3:72883148-72883167 | MS.gene75465:CDS | 25.0% |
| ! | GATTAGGAAATTTACACTTT+AGG | + | chr3.3:72882963-72882982 | MS.gene75465:CDS | 25.0% |
| ! | GTTATGTTGTATGGAAATTT+AGG | + | chr3.3:72882509-72882528 | MS.gene75465:CDS | 25.0% |
| ! | TTATAAAAATGGAAGATTCG+CGG | + | chr3.3:72882775-72882794 | MS.gene75465:CDS | 25.0% |
| !! | ATTATTGCTGATTACAGATT+AGG | + | chr3.3:72883109-72883128 | MS.gene75465:intron | 25.0% |
| !!! | AGGGTAATAGTTTTAATTTG+CGG | - | chr3.3:72883503-72883522 | None:intergenic | 25.0% |
| !!! | ATTGTGAAATGGATTATAGA+TGG | + | chr3.3:72884297-72884316 | MS.gene75465:intron | 25.0% |
| AATTTAGGGAATATTAGGCA+AGG | + | chr3.3:72882524-72882543 | MS.gene75465:CDS | 30.0% | |
| AGGAAATTTACACTTTAGGT+AGG | + | chr3.3:72882967-72882986 | MS.gene75465:intron | 30.0% | |
| ATCATTAACGTTGTTTGGTA+TGG | - | chr3.3:72882180-72882199 | None:intergenic | 30.0% | |
| ATTTGATGAACAAGAAGACT+TGG | - | chr3.3:72882294-72882313 | None:intergenic | 30.0% | |
| CTATTTAATTCCTCATCTTC+TGG | - | chr3.3:72884373-72884392 | None:intergenic | 30.0% | |
| GGATTAATGACAACAGTATT+TGG | + | chr3.3:72882116-72882135 | MS.gene75465:CDS | 30.0% | |
| GGGAATGAGGATTATAAAAA+TGG | + | chr3.3:72882764-72882783 | MS.gene75465:CDS | 30.0% | |
| TAATGACAACAGTATTTGGA+AGG | + | chr3.3:72882120-72882139 | MS.gene75465:CDS | 30.0% | |
| TCAAATTCATCAACTACTCA+GGG | + | chr3.3:72882359-72882378 | MS.gene75465:CDS | 30.0% | |
| TCATTAACGTTGTTTGGTAT+GGG | - | chr3.3:72882179-72882198 | None:intergenic | 30.0% | |
| TGATTACAGATTAGGAGAAA+CGG | + | chr3.3:72883117-72883136 | MS.gene75465:intron | 30.0% | |
| TGGATTATAGATGGAAAGAT+GGG | + | chr3.3:72884306-72884325 | MS.gene75465:intron | 30.0% | |
| TTCAAATTCATCAACTACTC+AGG | + | chr3.3:72882358-72882377 | MS.gene75465:CDS | 30.0% | |
| TTTGGATCATTAACGTTGTT+TGG | - | chr3.3:72882185-72882204 | None:intergenic | 30.0% | |
| ! | ACTCTATTTTACTTTGCAAC+CGG | + | chr3.3:72884066-72884085 | MS.gene75465:CDS | 30.0% |
| ! | ATGGATTATAGATGGAAAGA+TGG | + | chr3.3:72884305-72884324 | MS.gene75465:intron | 30.0% |
| ! | GATGAATTTGAAACCTTTGA+TGG | - | chr3.3:72882350-72882369 | None:intergenic | 30.0% |
| ! | TTTTTCTACCTTCAACTTGT+TGG | - | chr3.3:72882678-72882697 | None:intergenic | 30.0% |
| !! | AATAAGAGTACTACTTCCTT+TGG | - | chr3.3:72882471-72882490 | None:intergenic | 30.0% |
| !! | ATTAAATAGAGCATTGTTGG+AGG | + | chr3.3:72884384-72884403 | MS.gene75465:CDS | 30.0% |
| !! | CTTCTATAAGAAGCTGTTTT+AGG | - | chr3.3:72882839-72882858 | None:intergenic | 30.0% |
| !! | GGAATTAAATAGAGCATTGT+TGG | + | chr3.3:72884381-72884400 | MS.gene75465:CDS | 30.0% |
| !! | GTGTTTGAAACATTTTGTGA+AGG | - | chr3.3:72882251-72882270 | None:intergenic | 30.0% |
| AAAGAAGCTGTTGGTATTTC+AGG | + | chr3.3:72882410-72882429 | MS.gene75465:CDS | 35.0% | |
| ACCAAATTCTTTGGACCAAT+TGG | + | chr3.3:72883705-72883724 | MS.gene75465:CDS | 35.0% | |
| ACCAATTGGTCCAAAGAATT+TGG | - | chr3.3:72883709-72883728 | None:intergenic | 35.0% | |
| ACGTGATAGAGAGATACATT+AGG | - | chr3.3:72883523-72883542 | None:intergenic | 35.0% | |
| AGCAAAATGTTACGTGTATC+TGG | - | chr3.3:72883044-72883063 | None:intergenic | 35.0% | |
| ATTGTGATTGCGATATATCG+TGG | + | chr3.3:72883458-72883477 | MS.gene75465:intron | 35.0% | |
| CAAATTCATCAACTACTCAG+GGG | + | chr3.3:72882360-72882379 | MS.gene75465:CDS | 35.0% | |
| CAATCGTCAACATCAAAATG+AGG | - | chr3.3:72883684-72883703 | None:intergenic | 35.0% | |
| CAGAGCAGTTGAAAATAATG+GGG | + | chr3.3:72882744-72882763 | MS.gene75465:CDS | 35.0% | |
| CCAGAGCAGTTGAAAATAAT+GGG | + | chr3.3:72882743-72882762 | MS.gene75465:CDS | 35.0% | |
| CGTGATAGAGAGATACATTA+GGG | - | chr3.3:72883522-72883541 | None:intergenic | 35.0% | |
| GACGATTGTACCAAATTCTT+TGG | + | chr3.3:72883696-72883715 | MS.gene75465:CDS | 35.0% | |
| GCAAATTCAAATGCAAAAGG+AGG | + | chr3.3:72882605-72882624 | MS.gene75465:CDS | 35.0% | |
| GCTTATATTTAAGAGCAGAG+CGG | + | chr3.3:72883061-72883080 | MS.gene75465:intron | 35.0% | |
| GGTACTCATCAGTTATTAAC+TGG | + | chr3.3:72883321-72883340 | MS.gene75465:intron | 35.0% | |
| TAACAACAAGATGGCAAACA+AGG | + | chr3.3:72883923-72883942 | MS.gene75465:CDS | 35.0% | |
| TAATAACTGATGAGTACCTG+TGG | - | chr3.3:72883319-72883338 | None:intergenic | 35.0% | |
| TAGGGCTATATCAACTAGAA+TGG | + | chr3.3:72882718-72882737 | MS.gene75465:CDS | 35.0% | |
| TCATTTAAGTAAGTGCACTG+AGG | + | chr3.3:72883219-72883238 | MS.gene75465:CDS | 35.0% | |
| TCCAGAGCAGTTGAAAATAA+TGG | + | chr3.3:72882742-72882761 | MS.gene75465:CDS | 35.0% | |
| TCGAAAAAAACATCCTCTGT+GGG | + | chr3.3:72882146-72882165 | MS.gene75465:CDS | 35.0% | |
| TCTGGCAATGTTATGTTGTA+TGG | + | chr3.3:72882500-72882519 | MS.gene75465:CDS | 35.0% | |
| TGAAGCTGTGTTTGAATGTA+GGG | + | chr3.3:72882898-72882917 | MS.gene75465:CDS | 35.0% | |
| TTATAAACAAGCAGGATCAG+AGG | + | chr3.3:72883156-72883175 | MS.gene75465:CDS | 35.0% | |
| TTGAAGCTGTGTTTGAATGT+AGG | + | chr3.3:72882897-72882916 | MS.gene75465:CDS | 35.0% | |
| TTGAAGGTAGAAAAATCACG+TGG | + | chr3.3:72882683-72882702 | MS.gene75465:CDS | 35.0% | |
| ! | CTCTATTTTACTTTGCAACC+GGG | + | chr3.3:72884067-72884086 | MS.gene75465:CDS | 35.0% |
| ! | GAAATACCAACAGCTTCTTT+TGG | - | chr3.3:72882410-72882429 | None:intergenic | 35.0% |
| ! | GTTGAAAATAATGGGGAATG+AGG | + | chr3.3:72882751-72882770 | MS.gene75465:CDS | 35.0% |
| ! | TGATGAGCTCTATGATAATG+AGG | - | chr3.3:72882941-72882960 | None:intergenic | 35.0% |
| !! | CAGATTTGATGATGCTTTAG+AGG | + | chr3.3:72883872-72883891 | MS.gene75465:intron | 35.0% |
| !! | TGTTTGCCATCTTGTTGTTA+GGG | - | chr3.3:72883923-72883942 | None:intergenic | 35.0% |
| !! | TTGTTTGCCATCTTGTTGTT+AGG | - | chr3.3:72883924-72883943 | None:intergenic | 35.0% |
| AAGAGCTGATTGTAATGCCA+AGG | + | chr3.3:72884187-72884206 | MS.gene75465:CDS | 40.0% | |
| AAGGTAGAAAAATCACGTGG+TGG | + | chr3.3:72882686-72882705 | MS.gene75465:CDS | 40.0% | |
| ACCTCCAAAACTCTATCATC+CGG | + | chr3.3:72883280-72883299 | MS.gene75465:CDS | 40.0% | |
| ACTAGACCCTAACAACAAGA+TGG | + | chr3.3:72883914-72883933 | MS.gene75465:CDS | 40.0% | |
| AGAGTTCCAAAAGAAGCTGT+TGG | + | chr3.3:72882401-72882420 | MS.gene75465:CDS | 40.0% | |
| AGCAGTTGAAGATTGTACTG+CGG | + | chr3.3:72884124-72884143 | MS.gene75465:CDS | 40.0% | |
| ATTTCGCCAGAGAGAAAATC+AGG | + | chr3.3:72882089-72882108 | MS.gene75465:CDS | 40.0% | |
| CAACTTAAGAAACAACGAGG+TGG | + | chr3.3:72884415-72884434 | MS.gene75465:CDS | 40.0% | |
| CAGATTAGGAGAAACGGATA+AGG | + | chr3.3:72883123-72883142 | MS.gene75465:intron | 40.0% | |
| CTTCAACTGCTTTCTCCAAT+TGG | - | chr3.3:72884115-72884134 | None:intergenic | 40.0% | |
| CTTGTGTTGCATATGGAGAA+GGG | + | chr3.3:72884024-72884043 | MS.gene75465:CDS | 40.0% | |
| GAAAGATGGGAAGCTTCAAT+AGG | + | chr3.3:72884319-72884338 | MS.gene75465:CDS | 40.0% | |
| GCAGCTTGTAGATCAAAACT+CGG | + | chr3.3:72884089-72884108 | MS.gene75465:CDS | 40.0% | |
| GTCGAAAAAAACATCCTCTG+TGG | + | chr3.3:72882145-72882164 | MS.gene75465:CDS | 40.0% | |
| TAAAAATGGAAGATTCGCGG+AGG | + | chr3.3:72882778-72882797 | MS.gene75465:CDS | 40.0% | |
| TAGATCAAAACTCGGCCAAT+TGG | + | chr3.3:72884097-72884116 | MS.gene75465:CDS | 40.0% | |
| TGACAACAGTATTTGGAAGG+CGG | + | chr3.3:72882123-72882142 | MS.gene75465:CDS | 40.0% | |
| TGCAATAGCTGCATCATACA+AGG | - | chr3.3:72882810-72882829 | None:intergenic | 40.0% | |
| TTCACTTTAGCAACCTCATC+AGG | - | chr3.3:72883187-72883206 | None:intergenic | 40.0% | |
| ! | AACCTTGCTTTGGTGTAAGA+TGG | - | chr3.3:72884164-72884183 | None:intergenic | 40.0% |
| ! | AAGAGGAAACGAGCTTTTCA+AGG | + | chr3.3:72883983-72884002 | MS.gene75465:CDS | 40.0% |
| ! | ACCTTGCTTTGGTGTAAGAT+GGG | - | chr3.3:72884163-72884182 | None:intergenic | 40.0% |
| ! | ACTCAGGGGTATGTTAATCA+AGG | + | chr3.3:72882374-72882393 | MS.gene75465:CDS | 40.0% |
| ! | AGGGGTATGTTAATCAAGGT+AGG | + | chr3.3:72882378-72882397 | MS.gene75465:CDS | 40.0% |
| ! | ATCATCCACCAACAAGTTGA+AGG | + | chr3.3:72882667-72882686 | MS.gene75465:CDS | 40.0% |
| ! | CATAGAGCTCATCATCGATT+AGG | + | chr3.3:72882947-72882966 | MS.gene75465:CDS | 40.0% |
| ! | CCCATTATTTTCAACTGCTC+TGG | - | chr3.3:72882746-72882765 | None:intergenic | 40.0% |
| ! | TGTGCTGATATATGTGACAC+TGG | + | chr3.3:72883572-72883591 | MS.gene75465:intron | 40.0% |
| !! | TTCTACCTTCAACTTGTTGG+TGG | - | chr3.3:72882675-72882694 | None:intergenic | 40.0% |
| !!! | TGATAGAGTTTTGGAGGTCT+CGG | - | chr3.3:72883278-72883297 | None:intergenic | 40.0% |
| AAGAGAGACACCAGAAGATG+AGG | + | chr3.3:72884360-72884379 | MS.gene75465:CDS | 45.0% | |
| AATGATCCAAAACGACGACG+TGG | + | chr3.3:72882194-72882213 | MS.gene75465:CDS | 45.0% | |
| ACGTGGTGGTTCACTTTGTA+GGG | + | chr3.3:72882700-72882719 | MS.gene75465:CDS | 45.0% | |
| AGCTCTTCTCAACCTTGCTT+TGG | - | chr3.3:72884174-72884193 | None:intergenic | 45.0% | |
| CTGCTTTAACTGCTCTTGGT+AGG | + | chr3.3:72882870-72882889 | MS.gene75465:CDS | 45.0% | |
| GCGCAACTTAAGAAACAACG+AGG | + | chr3.3:72884412-72884431 | MS.gene75465:CDS | 45.0% | |
| GCTTGTGTTGCATATGGAGA+AGG | + | chr3.3:72884023-72884042 | MS.gene75465:CDS | 45.0% | |
| GTGGCCACAAAAACAATTGC+AGG | + | chr3.3:72883477-72883496 | MS.gene75465:intron | 45.0% | |
| TCCATATGCAACACAAGCCT+CGG | - | chr3.3:72884021-72884040 | None:intergenic | 45.0% | |
| TGTCTGCATCTTGATGCCTA+CGG | - | chr3.3:72883644-72883663 | None:intergenic | 45.0% | |
| ! | TGCACCGGATGATAGAGTTT+TGG | - | chr3.3:72883287-72883306 | None:intergenic | 45.0% |
| !! | AAGCGCTGATAAAACTCCGT+AGG | + | chr3.3:72883625-72883644 | MS.gene75465:CDS | 45.0% |
| !! | AAGTTGATATAGCTGCTGGC+AGG | + | chr3.3:72883757-72883776 | MS.gene75465:CDS | 45.0% |
| !! | ACCGGATGATAGAGTTTTGG+AGG | - | chr3.3:72883284-72883303 | None:intergenic | 45.0% |
| !! | ACGGAGTTTTATCAGCGCTT+CGG | - | chr3.3:72883625-72883644 | None:intergenic | 45.0% |
| !! | AGTGCTGCTTTAACTGCTCT+TGG | + | chr3.3:72882866-72882885 | MS.gene75465:CDS | 45.0% |
| !! | ATAGAGCATTGTTGGAGGCT+CGG | + | chr3.3:72884389-72884408 | MS.gene75465:CDS | 45.0% |
| !! | GCTCAAGTTGATATAGCTGC+TGG | + | chr3.3:72883753-72883772 | MS.gene75465:CDS | 45.0% |
| !! | GGCAAACAAGGTGTTGAGAA+AGG | + | chr3.3:72883935-72883954 | MS.gene75465:CDS | 45.0% |
| !! | GTTTTGATCTACAAGCTGCC+CGG | - | chr3.3:72884088-72884107 | None:intergenic | 45.0% |
| ACGACGTGGTGGTTCAAAAG+AGG | + | chr3.3:72882208-72882227 | MS.gene75465:CDS | 50.0% | |
| ACTCTTATTCGCGCTTCGTC+TGG | + | chr3.3:72882482-72882501 | MS.gene75465:CDS | 50.0% | |
| ATCAGAGGCTGATCCTGATG+AGG | + | chr3.3:72883171-72883190 | MS.gene75465:CDS | 50.0% | |
| CACGTGGTGGTTCACTTTGT+AGG | + | chr3.3:72882699-72882718 | MS.gene75465:CDS | 50.0% | |
| CCAGAGAGAAAATCAGGCTG+TGG | + | chr3.3:72882095-72882114 | MS.gene75465:CDS | 50.0% | |
| CTATCATCCGGTGCAGATTC+TGG | + | chr3.3:72883292-72883311 | MS.gene75465:CDS | 50.0% | |
| GCCCATCTTACACCAAAGCA+AGG | + | chr3.3:72884159-72884178 | MS.gene75465:CDS | 50.0% | |
| TCCGAGGCTTGTGTTGCATA+TGG | + | chr3.3:72884017-72884036 | MS.gene75465:CDS | 50.0% | |
| ! | CCACAGCCTGATTTTCTCTC+TGG | - | chr3.3:72882098-72882117 | None:intergenic | 50.0% |
| ! | GAAACCTTTGATGGTCCACG+TGG | - | chr3.3:72882341-72882360 | None:intergenic | 50.0% |
| !! | CAAGGCATCGAAATTCTCCG+AGG | + | chr3.3:72884001-72884020 | MS.gene75465:CDS | 50.0% |
| !! | TAGAGCATTGTTGGAGGCTC+GGG | + | chr3.3:72884390-72884409 | MS.gene75465:CDS | 50.0% |
| !!! | GCGGCCTGCAATTGTTTTTG+TGG | - | chr3.3:72883484-72883503 | None:intergenic | 50.0% |
| AACGCCACGTGGACCATCAA+AGG | + | chr3.3:72882334-72882353 | MS.gene75465:CDS | 55.0% | |
| AGGCTCGCAGGTTAGGAGAT+TGG | + | chr3.3:72883239-72883258 | MS.gene75465:CDS | 55.0% | |
| CAGAAAACGACAACGCCACG+TGG | + | chr3.3:72882323-72882342 | MS.gene75465:CDS | 55.0% | |
| CTGTGGACCAGAATCTGCAC+CGG | - | chr3.3:72883302-72883321 | None:intergenic | 55.0% | |
| GATCCAAAACGACGACGTGG+TGG | + | chr3.3:72882197-72882216 | MS.gene75465:CDS | 55.0% | |
| GTGACAGCTGCAAGAGGAAG+AGG | + | chr3.3:72883966-72883985 | MS.gene75465:CDS | 55.0% | |
| TATGGGAGCAGAACCCACAG+AGG | - | chr3.3:72882162-72882181 | None:intergenic | 55.0% | |
| ! | GAACCACCACGTCGTCGTTT+TGG | - | chr3.3:72882203-72882222 | None:intergenic | 55.0% |
| !!! | CGTGGCGTTGTCGTTTTCTG+TGG | - | chr3.3:72882323-72882342 | None:intergenic | 55.0% |
| CGAGCTGTGACAGCTGCAAG+AGG | + | chr3.3:72883960-72883979 | MS.gene75465:CDS | 60.0% | |
| CGGTGCAGATTCTGGTCCAC+AGG | + | chr3.3:72883300-72883319 | MS.gene75465:CDS | 60.0% | |
| GTAAGTGCACTGAGGCTCGC+AGG | + | chr3.3:72883227-72883246 | MS.gene75465:CDS | 60.0% | |
| TGCACTGAGGCTCGCAGGTT+AGG | + | chr3.3:72883232-72883251 | MS.gene75465:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 72882080 | 72884441 | 72882080 | ID=MS.gene75465 |
| chr3.3 | mRNA | 72882080 | 72884441 | 72882080 | ID=MS.gene75465.t1;Parent=MS.gene75465 |
| chr3.3 | exon | 72882080 | 72882984 | 72882080 | ID=MS.gene75465.t1.exon1;Parent=MS.gene75465.t1 |
| chr3.3 | CDS | 72882080 | 72882984 | 72882080 | ID=cds.MS.gene75465.t1;Parent=MS.gene75465.t1 |
| chr3.3 | exon | 72883126 | 72883321 | 72883126 | ID=MS.gene75465.t1.exon2;Parent=MS.gene75465.t1 |
| chr3.3 | CDS | 72883126 | 72883321 | 72883126 | ID=cds.MS.gene75465.t1;Parent=MS.gene75465.t1 |
| chr3.3 | exon | 72883606 | 72883778 | 72883606 | ID=MS.gene75465.t1.exon3;Parent=MS.gene75465.t1 |
| chr3.3 | CDS | 72883606 | 72883778 | 72883606 | ID=cds.MS.gene75465.t1;Parent=MS.gene75465.t1 |
| chr3.3 | exon | 72883875 | 72884208 | 72883875 | ID=MS.gene75465.t1.exon4;Parent=MS.gene75465.t1 |
| chr3.3 | CDS | 72883875 | 72884208 | 72883875 | ID=cds.MS.gene75465.t1;Parent=MS.gene75465.t1 |
| chr3.3 | exon | 72884316 | 72884441 | 72884316 | ID=MS.gene75465.t1.exon5;Parent=MS.gene75465.t1 |
| chr3.3 | CDS | 72884316 | 72884441 | 72884316 | ID=cds.MS.gene75465.t1;Parent=MS.gene75465.t1 |
| Gene Sequence |
| Protein sequence |
