Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75582.t1 | AES72068.2 | 92.7 | 372 | 26 | 1 | 1 | 372 | 1 | 371 | 4.00E-176 | 627.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75582.t1 | Q5XV40 | 31.7 | 388 | 219 | 12 | 1 | 372 | 1 | 358 | 3.7e-29 | 130.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75582.t1 | G7JC25 | 92.7 | 372 | 26 | 1 | 1 | 372 | 1 | 371 | 2.9e-176 | 627.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052463 | MS.gene75582 | 0.802301 | 5.99E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75582.t1 | MTR_3g085710 | 94.086 | 372 | 21 | 1 | 1 | 372 | 1 | 371 | 0.0 | 689 |
| MS.gene75582.t1 | MTR_7g022360 | 43.839 | 422 | 148 | 20 | 1 | 372 | 1 | 383 | 1.35e-81 | 254 |
| MS.gene75582.t1 | MTR_7g028590 | 36.504 | 389 | 183 | 13 | 1 | 372 | 1 | 342 | 2.39e-53 | 180 |
| MS.gene75582.t1 | MTR_7g028590 | 38.356 | 292 | 137 | 10 | 1 | 276 | 1 | 265 | 1.61e-41 | 147 |
| MS.gene75582.t1 | MTR_7g028590 | 35.294 | 272 | 119 | 11 | 119 | 371 | 2 | 235 | 1.44e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75582.t1 | AT5G14090 | 34.794 | 388 | 207 | 14 | 1 | 372 | 1 | 358 | 1.92e-44 | 157 |
| MS.gene75582.t1 | AT5G14090 | 33.922 | 283 | 162 | 8 | 1 | 270 | 1 | 271 | 9.52e-30 | 116 |
Find 82 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATGCATGGCAGATTTAT+TGG | 0.247230 | 3.3:-71533718 | None:intergenic |
| TGCCACCGCCAAGGGTAATT+TGG | 0.255351 | 3.3:-71534377 | None:intergenic |
| CTTATTCTTTGACACTGATA+TGG | 0.261165 | 3.3:-71533577 | None:intergenic |
| CCACTTCAGGGATATCTCTT+TGG | 0.265174 | 3.3:+71533519 | MS.gene75582:CDS |
| CATATCAGTGTCAAAGAATA+AGG | 0.288207 | 3.3:+71533578 | MS.gene75582:CDS |
| TGAAGATTCATCTGAGAATA+TGG | 0.319257 | 3.3:+71534401 | MS.gene75582:CDS |
| TTCTCTCTGCGGTGCTTACA+TGG | 0.339766 | 3.3:-71533455 | None:intergenic |
| GAACTTTCCGGTGAAATATC+TGG | 0.341905 | 3.3:-71534194 | None:intergenic |
| AGACAGAAAACTGCATAATA+AGG | 0.354735 | 3.3:+71533812 | MS.gene75582:CDS |
| CTTAATTTGCAGCAGTTACT+TGG | 0.355697 | 3.3:+71532528 | MS.gene75582:intron |
| GGATGATACTGACAATAAAA+AGG | 0.366676 | 3.3:+71533689 | MS.gene75582:CDS |
| AAACTCCATTTGTCCACTTC+AGG | 0.368249 | 3.3:+71533506 | MS.gene75582:CDS |
| TTCCTAGCAATTGGAACTCT+TGG | 0.378228 | 3.3:+71533261 | MS.gene75582:CDS |
| AGCAATTGGAACTCTTGGTT+TGG | 0.393170 | 3.3:+71533266 | MS.gene75582:CDS |
| CACTATCTGAAACCGAACTT+TGG | 0.396952 | 3.3:+71533108 | MS.gene75582:CDS |
| GATCAGCTTCAGCTCATTCT+CGG | 0.397412 | 3.3:-71533367 | None:intergenic |
| TTCCCCGGCTTCCTAGCAAT+TGG | 0.406570 | 3.3:+71533252 | MS.gene75582:CDS |
| GAGAAGCAAACAAGCAGATC+AGG | 0.413070 | 3.3:+71533647 | MS.gene75582:CDS |
| AAGTTGAATCAACAGAGGTC+TGG | 0.422480 | 3.3:-71533785 | None:intergenic |
| TGGAACTCTTGGTTTGGAAT+CGG | 0.430619 | 3.3:+71533272 | MS.gene75582:CDS |
| ACTATCTGAAACCGAACTTT+GGG | 0.435339 | 3.3:+71533109 | MS.gene75582:CDS |
| GCAGATCAGGACAATCTTGT+TGG | 0.449301 | 3.3:+71533660 | MS.gene75582:CDS |
| AACTCCATTTGTCCACTTCA+GGG | 0.453747 | 3.3:+71533507 | MS.gene75582:CDS |
| GAAGAAGAAAAGAATGAATG+AGG | 0.455837 | 3.3:+71534251 | MS.gene75582:CDS |
| GCTCACCCAGTGTTGTTCTC+TGG | 0.456925 | 3.3:-71533617 | None:intergenic |
| AATGATGGTGTTAGTGGTGA+TGG | 0.457780 | 3.3:-71533297 | None:intergenic |
| GTTCCAATTGCTAGGAAGCC+GGG | 0.462497 | 3.3:-71533255 | None:intergenic |
| AGAAAATCTTTCGAAGCAGT+TGG | 0.467282 | 3.3:+71533177 | MS.gene75582:CDS |
| TGAGAATATAATAACTGAAA+AGG | 0.468108 | 3.3:+71533332 | MS.gene75582:CDS |
| AACAACAATGATGATTCATC+TGG | 0.470245 | 3.3:+71533423 | MS.gene75582:CDS |
| GAAAATCTTTCGAAGCAGTT+GGG | 0.473047 | 3.3:+71533178 | MS.gene75582:CDS |
| AGATGAATCATCATTGTTGT+TGG | 0.478539 | 3.3:-71533421 | None:intergenic |
| ATGGAAAATGATGGTGTTAG+TGG | 0.481586 | 3.3:-71533303 | None:intergenic |
| ATATCCCTGAAGTGGACAAA+TGG | 0.494244 | 3.3:-71533511 | None:intergenic |
| AGTTGAATCAACAGAGGTCT+GGG | 0.504381 | 3.3:-71533784 | None:intergenic |
| TTAAATTGCAGACTTAGTGT+TGG | 0.509625 | 3.3:+71534624 | MS.gene75582:intron |
| GGAAGAAGATAAGGAGGCAT+GGG | 0.511093 | 3.3:+71533221 | MS.gene75582:CDS |
| ATTTGCAGCAGTTACTTGGA+TGG | 0.516221 | 3.3:+71532532 | MS.gene75582:intron |
| AAGAAGAAAAGAATGAATGA+GGG | 0.517369 | 3.3:+71534252 | MS.gene75582:CDS |
| AGTAGACGAGGAAGAAGATA+AGG | 0.519096 | 3.3:+71533212 | MS.gene75582:CDS |
| AGTTCCAATTGCTAGGAAGC+CGG | 0.522924 | 3.3:-71533256 | None:intergenic |
| CAAAAGTAACAAAGTTGAAG+AGG | 0.524580 | 3.3:+71534284 | MS.gene75582:CDS |
| AGAGGTCTGGGAAGAAGCAT+GGG | 0.527489 | 3.3:-71533772 | None:intergenic |
| CAGAGGTCTGGGAAGAAGCA+TGG | 0.527966 | 3.3:-71533773 | None:intergenic |
| CAACTCCAAATTACCCTTGG+CGG | 0.530405 | 3.3:+71534372 | MS.gene75582:CDS |
| CACTGAACCTTTCAAAGACC+TGG | 0.535667 | 3.3:+71532581 | MS.gene75582:CDS |
| ATCTTCACTGCCACCGCCAA+GGG | 0.536347 | 3.3:-71534385 | None:intergenic |
| TATTATATTCTCAACAGAGA+TGG | 0.542260 | 3.3:-71533322 | None:intergenic |
| GGACAATCTTGTTGGAGCAA+AGG | 0.550435 | 3.3:+71533668 | MS.gene75582:CDS |
| TCTTTCGAAGCAGTTGGGAG+TGG | 0.552062 | 3.3:+71533183 | MS.gene75582:CDS |
| AATCTTCACTGCCACCGCCA+AGG | 0.558247 | 3.3:-71534386 | None:intergenic |
| CCTTTCAAAGACCTGGTCAC+TGG | 0.558420 | 3.3:+71532588 | MS.gene75582:CDS |
| TCGTACTTCTCTGCACATGT+TGG | 0.562643 | 3.3:-71534228 | None:intergenic |
| CCAGTGACCAGGTCTTTGAA+AGG | 0.563072 | 3.3:-71532588 | None:intergenic |
| AGGAAGAAGATAAGGAGGCA+TGG | 0.571385 | 3.3:+71533220 | MS.gene75582:CDS |
| CTCCAAATTACCCTTGGCGG+TGG | 0.573132 | 3.3:+71534375 | MS.gene75582:CDS |
| CCAAAGAGATATCCCTGAAG+TGG | 0.575875 | 3.3:-71533519 | None:intergenic |
| GAAGATAAGGAGGCATGGGG+TGG | 0.581558 | 3.3:+71533225 | MS.gene75582:CDS |
| AGATTCTCCAGATATTTCAC+CGG | 0.584446 | 3.3:+71534187 | MS.gene75582:intron |
| TCAACAGAGATGGAAAATGA+TGG | 0.585903 | 3.3:-71533312 | None:intergenic |
| AGGCAACTCCAAATTACCCT+TGG | 0.588508 | 3.3:+71534369 | MS.gene75582:CDS |
| GCAGTTGGAAAGGAAAACAT+AGG | 0.595191 | 3.3:+71534333 | MS.gene75582:CDS |
| CACAGCCAGAGAACAACACT+GGG | 0.596125 | 3.3:+71533612 | MS.gene75582:CDS |
| ACACAGCCAGAGAACAACAC+TGG | 0.600693 | 3.3:+71533611 | MS.gene75582:CDS |
| AGACGAGGAAGAAGATAAGG+AGG | 0.605480 | 3.3:+71533215 | MS.gene75582:CDS |
| GATGGATGCATAGAAAACTT+CGG | 0.607420 | 3.3:+71532550 | MS.gene75582:CDS |
| CTGAAACCGAACTTTGGGAG+CGG | 0.608233 | 3.3:+71533114 | MS.gene75582:CDS |
| CATCTGAGAATATGGAGCAG+TGG | 0.617126 | 3.3:+71534409 | MS.gene75582:CDS |
| GCAGGCAACATCAGTTGATG+AGG | 0.617201 | 3.3:+71533071 | MS.gene75582:CDS |
| AACCAAGAGTTCCAATTGCT+AGG | 0.618323 | 3.3:-71533263 | None:intergenic |
| AAAATAGCTTACCAGTGACC+AGG | 0.620578 | 3.3:-71532599 | None:intergenic |
| TTCCAATTGCTAGGAAGCCG+GGG | 0.628342 | 3.3:-71533254 | None:intergenic |
| GCAGTGGATCAAAACAGATG+TGG | 0.633740 | 3.3:+71534425 | MS.gene75582:CDS |
| ACATAGGACAGTGCAAGAAG+AGG | 0.639282 | 3.3:+71534349 | MS.gene75582:CDS |
| TGTTTCTGATAATTCAACTG+CGG | 0.657633 | 3.3:-71533544 | None:intergenic |
| GAGTGGTAGAGCAGTAGACG+AGG | 0.660218 | 3.3:+71533200 | MS.gene75582:CDS |
| TCCATGACTATTTCTCTCTG+CGG | 0.668096 | 3.3:-71533466 | None:intergenic |
| AAGAAAAGAATGAATGAGGG+AGG | 0.670784 | 3.3:+71534255 | MS.gene75582:CDS |
| TGCTGAAGTTGAATCAACAG+AGG | 0.671518 | 3.3:-71533790 | None:intergenic |
| ACCGCAGAGAGAAATAGTCA+TGG | 0.693609 | 3.3:+71533465 | MS.gene75582:CDS |
| GAGGTCTGGGAAGAAGCATG+GGG | 0.705384 | 3.3:-71533771 | None:intergenic |
| GAAGAAGATAAGGAGGCATG+GGG | 0.707091 | 3.3:+71533222 | MS.gene75582:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATATTATCTTCTTAA+TGG | - | chr3.3:71532857-71532876 | None:intergenic | 10.0% |
| !! | AACTATATTAATTAATCTGT+GGG | + | chr3.3:71534160-71534179 | MS.gene75582:intron | 15.0% |
| !! | ACAAATATTATAACTAACAA+AGG | - | chr3.3:71533038-71533057 | None:intergenic | 15.0% |
| !! | TAACTATATTAATTAATCTG+TGG | + | chr3.3:71534159-71534178 | MS.gene75582:intron | 15.0% |
| !! | TTCCAATTAGTATTTATTTA+AGG | + | chr3.3:71534121-71534140 | MS.gene75582:intron | 15.0% |
| !!! | ACTAAGCAAAATATATTTTA+TGG | - | chr3.3:71532929-71532948 | None:intergenic | 15.0% |
| !! | AATACTAATTGGAAACAAAA+AGG | - | chr3.3:71534115-71534134 | None:intergenic | 20.0% |
| !! | AATATAGTTAACTAAAGTCT+AGG | - | chr3.3:71534149-71534168 | None:intergenic | 20.0% |
| !! | ATATAGTTAACTAAAGTCTA+GGG | - | chr3.3:71534148-71534167 | None:intergenic | 20.0% |
| !! | CTAATTCATTTCTATCAATT+TGG | - | chr3.3:71532884-71532903 | None:intergenic | 20.0% |
| !! | GACCTTAAATAAATACTAAT+TGG | - | chr3.3:71534126-71534145 | None:intergenic | 20.0% |
| !! | TAATTGTATAGAAAGTTGTT+GGG | + | chr3.3:71534013-71534032 | MS.gene75582:intron | 20.0% |
| !! | TGAGAATATAATAACTGAAA+AGG | + | chr3.3:71533332-71533351 | MS.gene75582:CDS | 20.0% |
| !! | TTGATTAATCTTTATAAGAG+TGG | + | chr3.3:71533968-71533987 | MS.gene75582:intron | 20.0% |
| !!! | ATTAATTCATTGTCTACTTT+TGG | - | chr3.3:71532701-71532720 | None:intergenic | 20.0% |
| ! | AAGAAGAAAAGAATGAATGA+GGG | + | chr3.3:71534252-71534271 | MS.gene75582:CDS | 25.0% |
| ! | AATTAATGCCAGATTTAACT+AGG | + | chr3.3:71532714-71532733 | MS.gene75582:intron | 25.0% |
| ! | AATTGTATAGAAAGTTGTTG+GGG | + | chr3.3:71534014-71534033 | MS.gene75582:intron | 25.0% |
| ! | ATTAATCTTTATAAGAGTGG+TGG | + | chr3.3:71533971-71533990 | MS.gene75582:intron | 25.0% |
| ! | GAAAAAAGCTCAAGAAAAAA+AGG | + | chr3.3:71533745-71533764 | MS.gene75582:CDS | 25.0% |
| ! | GTAATTGTATAGAAAGTTGT+TGG | + | chr3.3:71534012-71534031 | MS.gene75582:intron | 25.0% |
| ! | TATTATATTCTCAACAGAGA+TGG | - | chr3.3:71533325-71533344 | None:intergenic | 25.0% |
| !! | TATATATGTTTGATAGCTGT+TGG | + | chr3.3:71532632-71532651 | MS.gene75582:intron | 25.0% |
| AACAACAATGATGATTCATC+TGG | + | chr3.3:71533423-71533442 | MS.gene75582:CDS | 30.0% | |
| AAGAGAAAAATGATTCGCAT+CGG | + | chr3.3:71533922-71533941 | MS.gene75582:intron | 30.0% | |
| AATATTTGTGTTGCGTTTCA+GGG | + | chr3.3:71533049-71533068 | MS.gene75582:intron | 30.0% | |
| AGACAGAAAACTGCATAATA+AGG | + | chr3.3:71533812-71533831 | MS.gene75582:CDS | 30.0% | |
| AGATGAATCATCATTGTTGT+TGG | - | chr3.3:71533424-71533443 | None:intergenic | 30.0% | |
| ATTGTATAGAAAGTTGTTGG+GGG | + | chr3.3:71534015-71534034 | MS.gene75582:intron | 30.0% | |
| CAAAAGTAACAAAGTTGAAG+AGG | + | chr3.3:71534284-71534303 | MS.gene75582:CDS | 30.0% | |
| CATATCAGTGTCAAAGAATA+AGG | + | chr3.3:71533578-71533597 | MS.gene75582:CDS | 30.0% | |
| CTTATTCTTTGACACTGATA+TGG | - | chr3.3:71533580-71533599 | None:intergenic | 30.0% | |
| GAAACAAAAAGGCAAATGAT+TGG | - | chr3.3:71534104-71534123 | None:intergenic | 30.0% | |
| GAAGAAGAAAAGAATGAATG+AGG | + | chr3.3:71534251-71534270 | MS.gene75582:CDS | 30.0% | |
| GGAGCAACAAATATATATGT+TGG | - | chr3.3:71532908-71532927 | None:intergenic | 30.0% | |
| GGATGATACTGACAATAAAA+AGG | + | chr3.3:71533689-71533708 | MS.gene75582:CDS | 30.0% | |
| TAATATTTGTGTTGCGTTTC+AGG | + | chr3.3:71533048-71533067 | MS.gene75582:intron | 30.0% | |
| TGAAGATTCATCTGAGAATA+TGG | + | chr3.3:71534401-71534420 | MS.gene75582:CDS | 30.0% | |
| TGATACTGACAATAAAAAGG+AGG | + | chr3.3:71533692-71533711 | MS.gene75582:CDS | 30.0% | |
| TTAAATTGCAGACTTAGTGT+TGG | + | chr3.3:71534624-71534643 | MS.gene75582:intron | 30.0% | |
| ! | TGTTTCTGATAATTCAACTG+CGG | - | chr3.3:71533547-71533566 | None:intergenic | 30.0% |
| !! | AATTCATTGTCTACTTTTGG+AGG | - | chr3.3:71532698-71532717 | None:intergenic | 30.0% |
| !!! | CAACTTTGTTACTTTTGTTG+TGG | - | chr3.3:71534281-71534300 | None:intergenic | 30.0% |
| AAGAAAAGAATGAATGAGGG+AGG | + | chr3.3:71534255-71534274 | MS.gene75582:CDS | 35.0% | |
| AGAAAATCTTTCGAAGCAGT+TGG | + | chr3.3:71533177-71533196 | MS.gene75582:CDS | 35.0% | |
| AGATTCTCCAGATATTTCAC+CGG | + | chr3.3:71534187-71534206 | MS.gene75582:intron | 35.0% | |
| AGGTAACTAAGATCAGTCAA+TGG | + | chr3.3:71532434-71532453 | MS.gene75582:intron | 35.0% | |
| CTAACAAAGGATGTCTATGA+CGG | - | chr3.3:71533025-71533044 | None:intergenic | 35.0% | |
| GAAAATCTTTCGAAGCAGTT+GGG | + | chr3.3:71533178-71533197 | MS.gene75582:CDS | 35.0% | |
| GATGGATGCATAGAAAACTT+CGG | + | chr3.3:71532550-71532569 | MS.gene75582:CDS | 35.0% | |
| TACTGACAATAAAAAGGAGG+AGG | + | chr3.3:71533695-71533714 | MS.gene75582:CDS | 35.0% | |
| TAGACATGCCTAGTTAAATC+TGG | - | chr3.3:71532725-71532744 | None:intergenic | 35.0% | |
| TATATGCAGTTGAAGCAGTA+AGG | - | chr3.3:71532482-71532501 | None:intergenic | 35.0% | |
| TCAACAGAGATGGAAAATGA+TGG | - | chr3.3:71533315-71533334 | None:intergenic | 35.0% | |
| TTTACAGTGGGCAATACTTA+TGG | - | chr3.3:71532818-71532837 | None:intergenic | 35.0% | |
| ! | ACTATCTGAAACCGAACTTT+GGG | + | chr3.3:71533109-71533128 | MS.gene75582:CDS | 35.0% |
| ! | ATGGAAAATGATGGTGTTAG+TGG | - | chr3.3:71533306-71533325 | None:intergenic | 35.0% |
| ! | TCTAGAATGATCAGAAGTCT+TGG | + | chr3.3:71532948-71532967 | MS.gene75582:intron | 35.0% |
| ! | TTTGTGAGCTAGTTTACAGT+GGG | - | chr3.3:71532830-71532849 | None:intergenic | 35.0% |
| !! | CTTAATTTGCAGCAGTTACT+TGG | + | chr3.3:71532528-71532547 | MS.gene75582:intron | 35.0% |
| !!! | CTTTTTTCTCATGAGATGCA+TGG | - | chr3.3:71533733-71533752 | None:intergenic | 35.0% |
| AAAATAGCTTACCAGTGACC+AGG | - | chr3.3:71532602-71532621 | None:intergenic | 40.0% | |
| AAACTCCATTTGTCCACTTC+AGG | + | chr3.3:71533506-71533525 | MS.gene75582:CDS | 40.0% | |
| AACCAAGAGTTCCAATTGCT+AGG | - | chr3.3:71533266-71533285 | None:intergenic | 40.0% | |
| AACTCCATTTGTCCACTTCA+GGG | + | chr3.3:71533507-71533526 | MS.gene75582:CDS | 40.0% | |
| AAGTTGAATCAACAGAGGTC+TGG | - | chr3.3:71533788-71533807 | None:intergenic | 40.0% | |
| ACATCTATCTCACTCTGCAT+TGG | + | chr3.3:71534471-71534490 | MS.gene75582:intron | 40.0% | |
| AGCAATTGGAACTCTTGGTT+TGG | + | chr3.3:71533266-71533285 | MS.gene75582:CDS | 40.0% | |
| AGTAGACGAGGAAGAAGATA+AGG | + | chr3.3:71533212-71533231 | MS.gene75582:CDS | 40.0% | |
| AGTTGAATCAACAGAGGTCT+GGG | - | chr3.3:71533787-71533806 | None:intergenic | 40.0% | |
| ATACAGCCAAAAAGAGCAGT+TGG | + | chr3.3:71534318-71534337 | MS.gene75582:CDS | 40.0% | |
| ATATCCCTGAAGTGGACAAA+TGG | - | chr3.3:71533514-71533533 | None:intergenic | 40.0% | |
| ATTTGCAGCAGTTACTTGGA+TGG | + | chr3.3:71532532-71532551 | MS.gene75582:intron | 40.0% | |
| GAAATGAAAACTCAAGCGCA+TGG | + | chr3.3:71534581-71534600 | MS.gene75582:intron | 40.0% | |
| GAACTTTCCGGTGAAATATC+TGG | - | chr3.3:71534197-71534216 | None:intergenic | 40.0% | |
| GAGATGCATGGCAGATTTAT+TGG | - | chr3.3:71533721-71533740 | None:intergenic | 40.0% | |
| GCAGTTGGAAAGGAAAACAT+AGG | + | chr3.3:71534333-71534352 | MS.gene75582:CDS | 40.0% | |
| TCCAAGATTCATGTGCAACT+TGG | + | chr3.3:71533898-71533917 | MS.gene75582:intron | 40.0% | |
| TGCTGAAGTTGAATCAACAG+AGG | - | chr3.3:71533793-71533812 | None:intergenic | 40.0% | |
| TTCCTAGCAATTGGAACTCT+TGG | + | chr3.3:71533261-71533280 | MS.gene75582:CDS | 40.0% | |
| ! | AATGATGGTGTTAGTGGTGA+TGG | - | chr3.3:71533300-71533319 | None:intergenic | 40.0% |
| ! | CACTATCTGAAACCGAACTT+TGG | + | chr3.3:71533108-71533127 | MS.gene75582:CDS | 40.0% |
| ! | CTGCACATGTTGGATTTTCA+GGG | - | chr3.3:71534221-71534240 | None:intergenic | 40.0% |
| ! | GTTTGTGAGCTAGTTTACAG+TGG | - | chr3.3:71532831-71532850 | None:intergenic | 40.0% |
| ! | TATTTTCCGCTCCCAAAGTT+CGG | - | chr3.3:71533123-71533142 | None:intergenic | 40.0% |
| ! | TCCATGACTATTTCTCTCTG+CGG | - | chr3.3:71533469-71533488 | None:intergenic | 40.0% |
| ! | TCCTTTCCAACTGCTCTTTT+TGG | - | chr3.3:71534327-71534346 | None:intergenic | 40.0% |
| ! | TCTGCACATGTTGGATTTTC+AGG | - | chr3.3:71534222-71534241 | None:intergenic | 40.0% |
| !! | GATTTTCAGGGTGAACTTTC+CGG | - | chr3.3:71534209-71534228 | None:intergenic | 40.0% |
| !! | TGGAACTCTTGGTTTGGAAT+CGG | + | chr3.3:71533272-71533291 | MS.gene75582:CDS | 40.0% |
| ACATAGGACAGTGCAAGAAG+AGG | + | chr3.3:71534349-71534368 | MS.gene75582:CDS | 45.0% | |
| ACCGCAGAGAGAAATAGTCA+TGG | + | chr3.3:71533465-71533484 | MS.gene75582:CDS | 45.0% | |
| AGACGAGGAAGAAGATAAGG+AGG | + | chr3.3:71533215-71533234 | MS.gene75582:CDS | 45.0% | |
| AGGAAGAAGATAAGGAGGCA+TGG | + | chr3.3:71533220-71533239 | MS.gene75582:CDS | 45.0% | |
| AGGCAACTCCAAATTACCCT+TGG | + | chr3.3:71534369-71534388 | MS.gene75582:CDS | 45.0% | |
| AGTTCCAATTGCTAGGAAGC+CGG | - | chr3.3:71533259-71533278 | None:intergenic | 45.0% | |
| ATGGACGGTGATATATGCGT+TGG | - | chr3.3:71532799-71532818 | None:intergenic | 45.0% | |
| CAAAGGATGTCTATGACGGT+TGG | - | chr3.3:71533021-71533040 | None:intergenic | 45.0% | |
| CAACTCCAAATTACCCTTGG+CGG | + | chr3.3:71534372-71534391 | MS.gene75582:CDS | 45.0% | |
| CACTGAACCTTTCAAAGACC+TGG | + | chr3.3:71532581-71532600 | MS.gene75582:CDS | 45.0% | |
| CAGTGGGCAATACTTATGGA+CGG | - | chr3.3:71532814-71532833 | None:intergenic | 45.0% | |
| CATCTGAGAATATGGAGCAG+TGG | + | chr3.3:71534409-71534428 | MS.gene75582:CDS | 45.0% | |
| CCAAAGAGATATCCCTGAAG+TGG | - | chr3.3:71533522-71533541 | None:intergenic | 45.0% | |
| CCACTTCAGGGATATCTCTT+TGG | + | chr3.3:71533519-71533538 | MS.gene75582:CDS | 45.0% | |
| CCATGAACTCAAGTGGCATT+CGG | - | chr3.3:71532994-71533013 | None:intergenic | 45.0% | |
| GAGAAGCAAACAAGCAGATC+AGG | + | chr3.3:71533647-71533666 | MS.gene75582:CDS | 45.0% | |
| GATCAGCTTCAGCTCATTCT+CGG | - | chr3.3:71533370-71533389 | None:intergenic | 45.0% | |
| GCAGATCAGGACAATCTTGT+TGG | + | chr3.3:71533660-71533679 | MS.gene75582:CDS | 45.0% | |
| GCAGTGGATCAAAACAGATG+TGG | + | chr3.3:71534425-71534444 | MS.gene75582:CDS | 45.0% | |
| GCCAAAAAGAGCAGTTGGAA+AGG | + | chr3.3:71534323-71534342 | MS.gene75582:CDS | 45.0% | |
| GCCAAGTTGCACATGAATCT+TGG | - | chr3.3:71533902-71533921 | None:intergenic | 45.0% | |
| GGACAATCTTGTTGGAGCAA+AGG | + | chr3.3:71533668-71533687 | MS.gene75582:CDS | 45.0% | |
| TCGTACTTCTCTGCACATGT+TGG | - | chr3.3:71534231-71534250 | None:intergenic | 45.0% | |
| ! | ATGCCACTTGAGTTCATGGT+TGG | + | chr3.3:71532995-71533014 | MS.gene75582:intron | 45.0% |
| ! | CAAGCGCATGGCTAAGATTT+TGG | + | chr3.3:71534593-71534612 | MS.gene75582:intron | 45.0% |
| ! | GAAGAAGATAAGGAGGCATG+GGG | + | chr3.3:71533222-71533241 | MS.gene75582:CDS | 45.0% |
| ! | GGAAGAAGATAAGGAGGCAT+GGG | + | chr3.3:71533221-71533240 | MS.gene75582:CDS | 45.0% |
| ACACAGCCAGAGAACAACAC+TGG | + | chr3.3:71533611-71533630 | MS.gene75582:CDS | 50.0% | |
| ATCAGAAGTCTTGGCGAGTG+AGG | + | chr3.3:71532957-71532976 | MS.gene75582:intron | 50.0% | |
| CACAGCCAGAGAACAACACT+GGG | + | chr3.3:71533612-71533631 | MS.gene75582:CDS | 50.0% | |
| CCAGTGACCAGGTCTTTGAA+AGG | - | chr3.3:71532591-71532610 | None:intergenic | 50.0% | |
| CCTTTCAAAGACCTGGTCAC+TGG | + | chr3.3:71532588-71532607 | MS.gene75582:CDS | 50.0% | |
| GTTCCAATTGCTAGGAAGCC+GGG | - | chr3.3:71533258-71533277 | None:intergenic | 50.0% | |
| TCAGAAGTCTTGGCGAGTGA+GGG | + | chr3.3:71532958-71532977 | MS.gene75582:intron | 50.0% | |
| TCTTTCGAAGCAGTTGGGAG+TGG | + | chr3.3:71533183-71533202 | MS.gene75582:CDS | 50.0% | |
| TGGCCAACCATGAACTCAAG+TGG | - | chr3.3:71533001-71533020 | None:intergenic | 50.0% | |
| TTCCAATTGCTAGGAAGCCG+GGG | - | chr3.3:71533257-71533276 | None:intergenic | 50.0% | |
| TTCTCTCTGCGGTGCTTACA+TGG | - | chr3.3:71533458-71533477 | None:intergenic | 50.0% | |
| TTTGTGTTGCGTTTCAGGGC+AGG | + | chr3.3:71533053-71533072 | MS.gene75582:intron | 50.0% | |
| ! | AGAGGTCTGGGAAGAAGCAT+GGG | - | chr3.3:71533775-71533794 | None:intergenic | 50.0% |
| ! | CCGAATGCCACTTGAGTTCA+TGG | + | chr3.3:71532991-71533010 | MS.gene75582:intron | 50.0% |
| ! | CTGAAACCGAACTTTGGGAG+CGG | + | chr3.3:71533114-71533133 | MS.gene75582:CDS | 50.0% |
| ! | GCAGGCAACATCAGTTGATG+AGG | + | chr3.3:71533071-71533090 | MS.gene75582:CDS | 50.0% |
| AATCTTCACTGCCACCGCCA+AGG | - | chr3.3:71534389-71534408 | None:intergenic | 55.0% | |
| ATCTTCACTGCCACCGCCAA+GGG | - | chr3.3:71534388-71534407 | None:intergenic | 55.0% | |
| CAGAGGTCTGGGAAGAAGCA+TGG | - | chr3.3:71533776-71533795 | None:intergenic | 55.0% | |
| CTCCAAATTACCCTTGGCGG+TGG | + | chr3.3:71534375-71534394 | MS.gene75582:CDS | 55.0% | |
| GAGTGGTAGAGCAGTAGACG+AGG | + | chr3.3:71533200-71533219 | MS.gene75582:CDS | 55.0% | |
| TGCCACCGCCAAGGGTAATT+TGG | - | chr3.3:71534380-71534399 | None:intergenic | 55.0% | |
| TTCCCCGGCTTCCTAGCAAT+TGG | + | chr3.3:71533252-71533271 | MS.gene75582:CDS | 55.0% | |
| ! | GAAGATAAGGAGGCATGGGG+TGG | + | chr3.3:71533225-71533244 | MS.gene75582:CDS | 55.0% |
| ! | GAGGTCTGGGAAGAAGCATG+GGG | - | chr3.3:71533774-71533793 | None:intergenic | 55.0% |
| ! | GCATGGGGTGGTATTTTCCC+CGG | + | chr3.3:71533237-71533256 | MS.gene75582:CDS | 55.0% |
| ! | GCTCACCCAGTGTTGTTCTC+TGG | - | chr3.3:71533620-71533639 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 71532430 | 71534654 | 71532430 | ID=MS.gene75582 |
| chr3.3 | mRNA | 71532430 | 71534654 | 71532430 | ID=MS.gene75582.t1;Parent=MS.gene75582 |
| chr3.3 | exon | 71532430 | 71532435 | 71532430 | ID=MS.gene75582.t1.exon1;Parent=MS.gene75582.t1 |
| chr3.3 | CDS | 71532430 | 71532435 | 71532430 | ID=cds.MS.gene75582.t1;Parent=MS.gene75582.t1 |
| chr3.3 | exon | 71532543 | 71532609 | 71532543 | ID=MS.gene75582.t1.exon2;Parent=MS.gene75582.t1 |
| chr3.3 | CDS | 71532543 | 71532609 | 71532543 | ID=cds.MS.gene75582.t1;Parent=MS.gene75582.t1 |
| chr3.3 | exon | 71533070 | 71533833 | 71533070 | ID=MS.gene75582.t1.exon3;Parent=MS.gene75582.t1 |
| chr3.3 | CDS | 71533070 | 71533833 | 71533070 | ID=cds.MS.gene75582.t1;Parent=MS.gene75582.t1 |
| chr3.3 | exon | 71534189 | 71534450 | 71534189 | ID=MS.gene75582.t1.exon4;Parent=MS.gene75582.t1 |
| chr3.3 | CDS | 71534189 | 71534450 | 71534189 | ID=cds.MS.gene75582.t1;Parent=MS.gene75582.t1 |
| chr3.3 | exon | 71534635 | 71534654 | 71534635 | ID=MS.gene75582.t1.exon5;Parent=MS.gene75582.t1 |
| chr3.3 | CDS | 71534635 | 71534654 | 71534635 | ID=cds.MS.gene75582.t1;Parent=MS.gene75582.t1 |
| Gene Sequence |
| Protein sequence |
