AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75791

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75791.t1 MTR_5g099010 95.377 584 22 2 1 584 2 580 0.0 1160
MS.gene75791.t1 MTR_3g115220 65.833 480 155 3 40 510 20 499 0.0 677
MS.gene75791.t1 MTR_4g100810 60.373 429 166 3 94 519 79 506 0.0 550
MS.gene75791.t1 MTR_5g012770 55.391 473 186 6 39 504 41 495 0.0 521
MS.gene75791.t1 MTR_1g031590 37.059 510 288 12 20 504 46 547 2.04e-101 318
MS.gene75791.t1 MTR_4g082310 42.691 431 221 10 112 522 80 504 9.98e-99 310
MS.gene75791.t1 MTR_5g042200 45.316 395 196 8 126 504 88 478 1.91e-98 308
MS.gene75791.t1 MTR_4g084570 36.791 511 290 12 19 504 46 548 2.03e-98 310
MS.gene75791.t1 MTR_5g064620 42.431 436 218 13 95 505 86 513 4.25e-98 308
MS.gene75791.t1 MTR_3g099480 40.435 460 245 11 18 458 27 476 1.17e-96 305
MS.gene75791.t1 MTR_3g096020 38.418 531 282 13 6 513 85 593 1.44e-95 304
MS.gene75791.t1 MTR_6g016015 42.602 392 208 7 126 502 118 507 8.86e-95 300
MS.gene75791.t1 MTR_4g019210 38.411 453 258 12 74 513 187 631 1.91e-93 300
MS.gene75791.t1 MTR_3g005340 39.211 431 234 9 96 505 123 546 1.96e-93 298
MS.gene75791.t1 MTR_2g016470 37.013 462 233 12 95 504 160 615 4.65e-93 298
MS.gene75791.t1 MTR_5g059260 44.142 367 183 7 126 473 160 523 7.28e-91 291
MS.gene75791.t1 MTR_4g125460 37.939 427 248 9 94 508 62 483 1.87e-90 287
MS.gene75791.t1 MTR_4g110030 42.199 391 211 7 126 502 119 508 5.51e-90 287
MS.gene75791.t1 MTR_5g081690 35.542 498 293 13 20 504 29 511 6.45e-90 287
MS.gene75791.t1 MTR_4g125460 37.939 427 248 9 94 508 201 622 1.35e-88 286
MS.gene75791.t1 MTR_2g059350 38.215 437 237 10 94 502 76 507 3.26e-88 283
MS.gene75791.t1 MTR_3g086570 40.201 398 217 11 126 504 153 548 4.88e-87 280
MS.gene75791.t1 MTR_5g032100 36.726 452 236 13 94 504 60 502 2.15e-82 267
MS.gene75791.t1 MTR_3g100310 34.051 511 267 17 47 504 23 516 6.91e-80 261
MS.gene75791.t1 MTR_4g132590 38.442 398 194 8 126 474 68 463 2.05e-79 259
MS.gene75791.t1 MTR_3g026650 36.175 434 258 9 88 509 136 562 2.71e-78 258
MS.gene75791.t1 MTR_4g132590 38.442 398 194 8 126 474 167 562 3.09e-78 258
MS.gene75791.t1 MTR_1g102030 35.880 432 253 10 94 507 61 486 2.51e-76 251
MS.gene75791.t1 MTR_4g023030 36.195 431 256 9 88 506 196 619 1.85e-72 244
MS.gene75791.t1 MTR_3g026650 37.921 356 207 5 88 434 136 486 4.07e-67 226
MS.gene75791.t1 MTR_3g086570 41.007 278 147 7 126 386 153 430 3.36e-62 212
MS.gene75791.t1 MTR_1g101990 37.676 284 161 8 233 507 6 282 1.31e-53 185
MS.gene75791.t1 MTR_7g017330 31.152 382 231 11 39 398 19 390 1.30e-42 162
MS.gene75791.t1 MTR_4g010990 30.473 338 197 9 126 447 78 393 1.00e-39 150
MS.gene75791.t1 MTR_3g026650 37.838 222 134 3 88 307 136 355 1.49e-39 149
MS.gene75791.t1 MTR_4g010990 29.846 325 190 9 139 447 2 304 7.19e-36 138
MS.gene75791.t1 MTR_3g092590 28.941 387 248 11 36 402 7 386 3.16e-35 141
MS.gene75791.t1 MTR_3g092590 29.091 385 250 11 36 402 7 386 3.39e-35 140
MS.gene75791.t1 MTR_7g064210 43.820 178 86 3 225 390 13 188 1.94e-33 132
MS.gene75791.t1 MTR_1g007390 32.841 271 161 8 151 402 124 392 1.28e-30 127
MS.gene75791.t1 MTR_4g008200 26.409 337 203 12 124 449 36 338 8.38e-21 94.7
MS.gene75791.t1 MTR_2g038320 24.518 363 222 10 126 470 95 423 8.62e-21 95.5
MS.gene75791.t1 MTR_4g008200 26.409 337 203 12 124 449 87 389 1.81e-20 94.7
MS.gene75791.t1 MTR_1g101985 41.346 104 59 1 94 197 61 162 2.87e-20 89.0
MS.gene75791.t1 MTR_1g095680 43.182 88 39 2 245 321 7 94 1.40e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75791.t1 AT1G76270 58.645 561 220 5 33 584 15 572 0.0 677
MS.gene75791.t1 AT4G38390 63.158 494 176 3 40 530 42 532 0.0 669
MS.gene75791.t1 AT1G20550 57.793 571 218 7 29 584 2 564 0.0 662
MS.gene75791.t1 AT4G16650 62.945 421 153 2 94 512 93 512 0.0 538
MS.gene75791.t1 AT4G16650 62.945 421 153 2 94 512 93 512 0.0 538
MS.gene75791.t1 AT2G01480 44.598 361 182 7 126 469 157 516 1.24e-98 311
MS.gene75791.t1 AT2G01480 44.915 354 178 6 126 462 157 510 4.03e-98 309
MS.gene75791.t1 AT1G22460 44.010 409 200 10 126 511 163 565 4.11e-97 307
MS.gene75791.t1 AT5G64600 37.282 515 269 13 28 505 19 516 1.99e-96 304
MS.gene75791.t1 AT1G14970 41.206 398 213 9 126 504 12 407 4.39e-94 295
MS.gene75791.t1 AT1G38065 42.526 388 200 7 109 474 17 403 4.42e-94 296
MS.gene75791.t1 AT1G14020 43.147 394 208 7 127 506 95 486 4.80e-94 297
MS.gene75791.t1 AT1G35510 36.295 529 290 14 21 513 49 566 9.21e-94 298
MS.gene75791.t1 AT1G14970 41.206 398 213 9 126 504 38 433 1.11e-93 295
MS.gene75791.t1 AT1G38065 43.989 366 187 6 126 474 29 393 2.07e-93 294
MS.gene75791.t1 AT1G14970 41.206 398 213 9 126 504 158 553 2.30e-92 295
MS.gene75791.t1 AT2G03280 43.223 391 205 8 127 502 92 480 3.38e-92 292
MS.gene75791.t1 AT1G38131 43.989 366 187 6 126 474 158 522 1.03e-91 294
MS.gene75791.t1 AT5G35570 40.888 428 234 11 95 509 225 646 1.36e-91 295
MS.gene75791.t1 AT5G15740 41.371 394 210 7 126 502 109 498 2.18e-90 288
MS.gene75791.t1 AT2G37980 39.401 434 234 10 94 509 199 621 3.75e-90 291
MS.gene75791.t1 AT3G02250 41.176 391 215 7 126 502 109 498 1.90e-88 283
MS.gene75791.t1 AT3G54100 34.570 512 296 12 20 509 123 617 2.89e-88 286
MS.gene75791.t1 AT2G03280 40.431 418 205 9 127 502 92 507 2.69e-86 277
MS.gene75791.t1 AT1G29200 39.480 423 209 8 97 474 44 464 3.25e-86 277
MS.gene75791.t1 AT1G29200 39.480 423 209 8 97 474 44 464 3.25e-86 277
MS.gene75791.t1 AT3G26370 39.698 398 219 11 126 504 161 556 1.25e-85 277
MS.gene75791.t1 AT5G65470 38.106 454 229 13 94 504 59 503 2.03e-85 275
MS.gene75791.t1 AT1G29200 39.480 423 209 8 97 474 160 580 7.40e-85 276
MS.gene75791.t1 AT1G29200 41.071 392 184 8 128 474 1 390 2.23e-84 270
MS.gene75791.t1 AT1G11990 40.872 367 199 6 126 474 193 559 5.22e-82 268
MS.gene75791.t1 AT1G04910 36.516 419 254 7 94 504 61 475 7.24e-82 266
MS.gene75791.t1 AT1G62330 36.776 397 203 6 126 474 224 620 1.00e-81 269
MS.gene75791.t1 AT4G24530 35.635 449 245 12 94 504 75 517 4.85e-81 264
MS.gene75791.t1 AT5G01100 31.335 517 306 13 38 518 120 623 3.27e-79 262
MS.gene75791.t1 AT2G44500 35.952 420 259 6 94 505 146 563 2.04e-76 253
MS.gene75791.t1 AT5G63390 36.567 402 245 5 94 488 133 531 3.32e-76 252
MS.gene75791.t1 AT1G11990 37.376 404 198 7 126 474 178 581 9.85e-76 253
MS.gene75791.t1 AT3G07900 36.364 429 257 8 93 510 156 579 4.17e-73 244
MS.gene75791.t1 AT1G52630 30.628 382 220 12 76 440 30 383 2.23e-44 164
MS.gene75791.t1 AT3G30300 31.500 400 228 14 22 399 18 393 4.73e-42 161
MS.gene75791.t1 AT3G30300 31.500 400 228 14 22 399 18 393 4.73e-42 161
MS.gene75791.t1 AT3G03810 35.077 325 176 9 97 402 77 385 1.04e-40 157
MS.gene75791.t1 AT3G03810 35.077 325 176 9 97 402 77 385 1.04e-40 157
MS.gene75791.t1 AT1G52630 32.278 316 178 9 139 440 2 295 1.84e-39 148
MS.gene75791.t1 AT3G26370 39.234 209 116 6 126 323 161 369 6.79e-39 147
MS.gene75791.t1 AT2G44500 34.231 260 164 3 94 347 146 404 3.75e-37 143
MS.gene75791.t1 AT3G21190 25.203 369 211 13 126 469 93 421 2.35e-19 91.3

Find 153 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCATCGCGCTACATTTA+AGG 0.117490 5.1:-80644032 MS.gene75791:intron
GTTATTCTTGTTCATGAATA+AGG 0.127801 5.1:+80643091 None:intergenic
GCATTCTCTGGTTGCTATTA+TGG 0.145988 5.1:-80643778 MS.gene75791:CDS
TGAAGAGCATTTACAATAAA+AGG 0.154073 5.1:+80646233 None:intergenic
AATTGGATCATACATCTTTC+TGG 0.170645 5.1:-80644727 MS.gene75791:CDS
ACAAATTTCTCTCCCATATT+TGG 0.187446 5.1:+80644481 None:intergenic
CAAATTTACGGATTCGATTC+AGG 0.201483 5.1:-80644100 MS.gene75791:CDS
TGTAAAGCAGCTACCAAATA+TGG 0.220138 5.1:-80644494 MS.gene75791:CDS
CTTGGAACACGCACTGTATA+TGG 0.243424 5.1:+80644454 None:intergenic
CTACCATGCTCTCAAATTTA+CGG 0.290291 5.1:-80644112 MS.gene75791:CDS
CCATGTCTTCTTACTTTCTC+AGG 0.302140 5.1:+80643597 None:intergenic
TTATTCTTGTTCATGAATAA+GGG 0.305017 5.1:+80643092 None:intergenic
TTCTTTCTCTTCACTGATGA+TGG 0.313084 5.1:+80646407 None:intergenic
ACGCGACCCTCGTAGCATTT+GGG 0.325695 5.1:+80644421 None:intergenic
GAAAAGAACTTGGTGAAATT+AGG 0.326334 5.1:-80643738 MS.gene75791:CDS
TACTCTTGTTATTCCAGAAT+TGG 0.327689 5.1:-80644744 MS.gene75791:CDS
AAGGAGTCCGATGAGTCTTC+TGG 0.328208 5.1:+80646361 None:intergenic
ACGCATTTGTATGTGGCTTC+TGG 0.336705 5.1:-80643510 MS.gene75791:CDS
TGTATTTCAGGAAAATGATT+TGG 0.337250 5.1:-80646126 MS.gene75791:intron
AACGCGACCCTCGTAGCATT+TGG 0.337594 5.1:+80644420 None:intergenic
CTACTTACAGGCATGATCTA+TGG 0.340612 5.1:-80645953 MS.gene75791:CDS
ATCTCGAGTTCGAACTTTCC+AGG 0.350555 5.1:-80643048 MS.gene75791:CDS
AAAGATGTATGATCCAATTC+TGG 0.354641 5.1:+80644731 None:intergenic
GTATCGATCCGGATGAGTTT+TGG 0.355722 5.1:+80645755 None:intergenic
AACTTTCCAGGTAGGCTTCA+TGG 0.360105 5.1:-80643036 MS.gene75791:CDS
GTCTGAATTAGATTATGATT+TGG 0.365270 5.1:-80642829 MS.gene75791:CDS
GAGACGACGGCGAAGGAAAC+TGG 0.366522 5.1:+80646334 None:intergenic
CTTAGCTACCAAGGAGGAAT+TGG 0.368531 5.1:-80643415 MS.gene75791:CDS
CTTGGTCAGTACCCATTAGA+AGG 0.376857 5.1:+80642754 None:intergenic
AAGAGTAGCATTCAAAAGAT+AGG 0.384573 5.1:+80644760 None:intergenic
AGCATAAGACCAACTTCCTC+TGG 0.394026 5.1:+80643558 None:intergenic
CCGGATATGCTTGCATTCTC+TGG 0.396269 5.1:-80643790 MS.gene75791:CDS
TCAAACGCATGAAGGCAATA+AGG 0.398688 5.1:-80642898 MS.gene75791:CDS
CCAGAGAATGCAAGCATATC+CGG 0.399860 5.1:+80643790 None:intergenic
GGCTTAAATCAACAGAGAAC+AGG 0.407017 5.1:-80645711 MS.gene75791:CDS
CTCAATTATTTGATGCCGAT+TGG 0.407362 5.1:-80644549 MS.gene75791:CDS
GCAATCGCCATTTCACATTC+CGG 0.408047 5.1:-80646075 MS.gene75791:intron
GTCTCCTTTGAATGGAAGTT+GGG 0.408062 5.1:+80643438 None:intergenic
AGGCAAATGAAGCTACTTAC+AGG 0.416698 5.1:-80645965 MS.gene75791:CDS
TCAGGGAATGGGAAATTTGT+TGG 0.419141 5.1:-80644082 MS.gene75791:CDS
GTGGCTTCTGGAGAAATATA+TGG 0.419254 5.1:-80643498 MS.gene75791:CDS
ATCTACAAAAGCTGAGGTGC+AGG 0.420709 5.1:-80644140 MS.gene75791:CDS
CTGCCTGACCTCAACTCATT+AGG 0.423475 5.1:+80643008 None:intergenic
GAAGAGCATTTACAATAAAA+GGG 0.426667 5.1:+80646234 None:intergenic
CTACAGACTTTCTAATCTGC+TGG 0.431795 5.1:-80644169 MS.gene75791:CDS
AAATTTACGGATTCGATTCA+GGG 0.431803 5.1:-80644099 MS.gene75791:CDS
GGTCTCCTTTGAATGGAAGT+TGG 0.432592 5.1:+80643437 None:intergenic
CTCTGGTTGCTATTATGGTG+GGG 0.437730 5.1:-80643773 MS.gene75791:CDS
CTGTTGATTTAAGCCTCCAC+TGG 0.440491 5.1:+80645719 None:intergenic
TACGGATTCGATTCAGGGAA+TGG 0.440840 5.1:-80644094 MS.gene75791:CDS
CTCTGTTGTAGGAGGTACTT+TGG 0.443197 5.1:-80643155 MS.gene75791:intron
TCTCTGGTTGCTATTATGGT+GGG 0.455204 5.1:-80643774 MS.gene75791:CDS
CTTTCCCAACTTCCATTCAA+AGG 0.456148 5.1:-80643442 MS.gene75791:CDS
ATTGCATTACACAGGTTGTT+CGG 0.456755 5.1:-80644206 MS.gene75791:intron
AGAGAGCTCTGAGGGGTGCT+AGG 0.456987 5.1:+80643463 None:intergenic
CGTGAAGAGAAAGACACAAA+TGG 0.458606 5.1:+80643390 None:intergenic
TTCTCTGCCTGTAGTAATGC+CGG 0.460147 5.1:-80645909 MS.gene75791:CDS
TGTTTCATATAGGTTTGAAC+CGG 0.461614 5.1:-80643809 MS.gene75791:intron
TAGCTAAGGTCTCCTTTGAA+TGG 0.465721 5.1:+80643430 None:intergenic
ACGGATTCGATTCAGGGAAT+GGG 0.465732 5.1:-80644093 MS.gene75791:CDS
TTCTCTGGTTGCTATTATGG+TGG 0.468408 5.1:-80643775 MS.gene75791:CDS
CATCTTTCTGGAAAGACAAC+AGG 0.468808 5.1:-80644715 MS.gene75791:intron
GTGAAGAGAAAGACACAAAT+GGG 0.470665 5.1:+80643391 None:intergenic
GCTCTCCCATGAAGCCTACC+TGG 0.479446 5.1:+80643030 None:intergenic
CAATTCCTCCTTGGTAGCTA+AGG 0.492942 5.1:+80643416 None:intergenic
GTTGGGAAAGAGAGCTCTGA+GGG 0.493118 5.1:+80643455 None:intergenic
CCAACTTCCTCTGGGGTAAG+TGG 0.493118 5.1:+80643567 None:intergenic
TTTGGACAATTATAGAAAGC+AGG 0.493179 5.1:-80642811 MS.gene75791:CDS
TCTGGTTGCTATTATGGTGG+GGG 0.493967 5.1:-80643772 MS.gene75791:CDS
GGTCTTATGCTTAGAGCACT+AGG 0.494580 5.1:-80643546 MS.gene75791:CDS
CTAAAATTCTAGCTGGAAGA+AGG 0.494617 5.1:-80643296 MS.gene75791:intron
ACTTTCCAGGTAGGCTTCAT+GGG 0.496124 5.1:-80643035 MS.gene75791:CDS
GGCTAATACCAAAACTCATC+CGG 0.498226 5.1:-80645763 MS.gene75791:CDS
CTCGTACTTCCTCAGCAGGC+TGG 0.501222 5.1:+80642856 None:intergenic
ACACGCTTCTTGACCAGCAC+TGG 0.503067 5.1:+80644394 None:intergenic
TGTGTCTTTCTCTTCACGCA+TGG 0.504664 5.1:-80643385 MS.gene75791:CDS
AAGGCAATAAGGTAGAAAAC+AGG 0.505309 5.1:-80642887 MS.gene75791:CDS
GAGCCTAATGAGTTGAGGTC+AGG 0.509212 5.1:-80643011 MS.gene75791:CDS
AAAGAGAAGGCAAACGGAGA+TGG 0.510159 5.1:+80646289 None:intergenic
CGCGACCCTCGTAGCATTTG+GGG 0.512807 5.1:+80644422 None:intergenic
GTAAAGCAGCTACCAAATAT+GGG 0.514532 5.1:-80644493 MS.gene75791:CDS
TTGATTACCGGAATGTGAAA+TGG 0.514677 5.1:+80646068 None:intergenic
AGAATACTTGCACTTCAGCT+TGG 0.514937 5.1:+80642736 None:intergenic
CATATACAGTGCGTGTTCCA+AGG 0.527953 5.1:-80644453 MS.gene75791:CDS
CCTGAGAAAGTAAGAAGACA+TGG 0.528230 5.1:-80643597 MS.gene75791:CDS
CACTCTCGTACTTCCTCAGC+AGG 0.530274 5.1:+80642852 None:intergenic
AAGGGATGTTATAAACCAAT+CGG 0.532490 5.1:+80644534 None:intergenic
ATTGGTTTATAACATCCCTT+CGG 0.534376 5.1:-80644531 MS.gene75791:CDS
GAAAAGGAAAGAAAAGAACT+TGG 0.534475 5.1:-80643748 MS.gene75791:CDS
GCATAAGACCAACTTCCTCT+GGG 0.536685 5.1:+80643559 None:intergenic
GAAAAGAAAGAGAAGGCAAA+CGG 0.539093 5.1:+80646283 None:intergenic
CCTCAAAATCAAACGCATGA+AGG 0.539206 5.1:-80642906 MS.gene75791:CDS
CAACTCTTATGTCATTCCGA+AGG 0.542501 5.1:+80644515 None:intergenic
AACATGGCTAAAATTCTAGC+TGG 0.543477 5.1:-80643303 MS.gene75791:CDS
GTTGACACCGGCATTACTAC+AGG 0.543830 5.1:+80645902 None:intergenic
GCAGATAATTGATGCTGTTG+TGG 0.547639 5.1:-80644786 MS.gene75791:intron
AATTGAAACGCATTTGTATG+TGG 0.548016 5.1:-80643517 MS.gene75791:CDS
AAACGGAGATGGCGGAAATG+AGG 0.548034 5.1:+80646300 None:intergenic
TGGCGGAAATGAGGAGGCGA+TGG 0.552680 5.1:+80646309 None:intergenic
GCGATTAACAAGTATCGATC+CGG 0.554337 5.1:+80645744 None:intergenic
AGAAAGCAGGTTCAGCTCAA+AGG 0.555946 5.1:-80642798 MS.gene75791:CDS
AACAAACAACAATGGGAACA+TGG 0.556243 5.1:-80643319 MS.gene75791:CDS
CGAGTTCGAACTTTCCAGGT+AGG 0.556717 5.1:-80643044 MS.gene75791:CDS
AACTCTTATGTCATTCCGAA+GGG 0.557571 5.1:+80644516 None:intergenic
GAGAGCTCTGAGGGGTGCTA+GGG 0.558049 5.1:+80643464 None:intergenic
AAATGGGGCCAATTCCTCCT+TGG 0.558531 5.1:+80643407 None:intergenic
TTTCCGTTAGGGCGGATGGT+AGG 0.563392 5.1:+80643125 None:intergenic
AATCCGTAAATTTGAGAGCA+TGG 0.564183 5.1:+80644109 None:intergenic
TGGGAAATTTGTTGGTTGAG+CGG 0.564822 5.1:-80644074 MS.gene75791:CDS
TTGTTAATCGCAACCAGTGG+AGG 0.567512 5.1:-80645732 MS.gene75791:CDS
TTGGTCAGTACCCATTAGAA+GGG 0.570383 5.1:+80642755 None:intergenic
AAACCTACCATCCGCCCTAA+CGG 0.572836 5.1:-80643128 MS.gene75791:CDS
TATTCTTGTTCATGAATAAG+GGG 0.577205 5.1:+80643093 None:intergenic
GGCGAAGGAAACTGGCAAGA+AGG 0.588540 5.1:+80646342 None:intergenic
TCTTGCATATGTCAAAACTC+AGG 0.590986 5.1:-80642960 MS.gene75791:CDS
GATGGATGAGACGACGGCGA+AGG 0.593369 5.1:+80646327 None:intergenic
GAGAAGGCAAACGGAGATGG+CGG 0.595462 5.1:+80646292 None:intergenic
CCACTTACCCCAGAGGAAGT+TGG 0.600004 5.1:-80643567 MS.gene75791:CDS
GCATGATGAAAAGAAAGAGA+AGG 0.602057 5.1:+80646276 None:intergenic
GCTTAAATCAACAGAGAACA+GGG 0.602960 5.1:-80645710 MS.gene75791:CDS
AAGAGCATTTACAATAAAAG+GGG 0.610292 5.1:+80646235 None:intergenic
AATGAGTTGAGGTCAGGCAG+TGG 0.610497 5.1:-80643005 MS.gene75791:CDS
CTTGCATATGTCAAAACTCA+GGG 0.615011 5.1:-80642959 MS.gene75791:CDS
CGGAGATGGCGGAAATGAGG+AGG 0.616366 5.1:+80646303 None:intergenic
GCATTTACAATAAAAGGGGA+AGG 0.618091 5.1:+80646239 None:intergenic
AAAGGAGACCTTAGCTACCA+AGG 0.620774 5.1:-80643424 MS.gene75791:CDS
GACAAGTCCAGAAGACTCAT+CGG 0.622144 5.1:-80646368 MS.gene75791:CDS
AACTTGGTGAAATTAGGAAG+CGG 0.626657 5.1:-80643732 MS.gene75791:CDS
TGGAGAAATATATGGAGGCG+AGG 0.630114 5.1:-80643490 MS.gene75791:CDS
ATGTCAAAACTCAGGGTCGG+AGG 0.632035 5.1:-80642952 MS.gene75791:CDS
TACTTGTTAATCGCAACCAG+TGG 0.633957 5.1:-80645735 MS.gene75791:CDS
TTTACTTGCAAAGTTGACAC+CGG 0.634644 5.1:+80645890 None:intergenic
GACAGAAAACCAGCCTGCTG+AGG 0.636575 5.1:-80642865 MS.gene75791:CDS
TGGGAGAGCCTAATGAGTTG+AGG 0.637626 5.1:-80643016 MS.gene75791:CDS
TGGTCAGTACCCATTAGAAG+GGG 0.642645 5.1:+80642756 None:intergenic
TTGGTGAAATTAGGAAGCGG+TGG 0.644603 5.1:-80643729 MS.gene75791:CDS
AGAAAGTAAGAAGACATGGA+AGG 0.646390 5.1:-80643593 MS.gene75791:CDS
CATATGTCAAAACTCAGGGT+CGG 0.649933 5.1:-80642955 MS.gene75791:CDS
CTGCTGAGGAAGTACGAGAG+TGG 0.653675 5.1:-80642851 MS.gene75791:CDS
TCTACAAAAGCTGAGGTGCA+GGG 0.657185 5.1:-80644139 MS.gene75791:CDS
TGAACAAGAATAACATGACA+TGG 0.657343 5.1:-80643082 MS.gene75791:CDS
GGAGGCGATGGATGAGACGA+CGG 0.693598 5.1:+80646321 None:intergenic
GCTTCTGGAGAAATATATGG+AGG 0.698383 5.1:-80643495 MS.gene75791:CDS
GCGACCCTCGTAGCATTTGG+GGG 0.700748 5.1:+80644423 None:intergenic
AGTTGGGAAAGAGAGCTCTG+AGG 0.701986 5.1:+80643454 None:intergenic
TGAAGAGAAAGACACAAATG+GGG 0.704290 5.1:+80643392 None:intergenic
GGTCAGTACCCATTAGAAGG+GGG 0.707285 5.1:+80642757 None:intergenic
ATGATGATCTACAAAAGCTG+AGG 0.712332 5.1:-80644146 MS.gene75791:CDS
CATAAGACCAACTTCCTCTG+GGG 0.724014 5.1:+80643560 None:intergenic
CTTAAATCAACAGAGAACAG+GGG 0.728232 5.1:-80645709 MS.gene75791:intron
AAGGTGTCCACTTACCCCAG+AGG 0.746305 5.1:-80643574 MS.gene75791:CDS
TTGGGAAAGAGAGCTCTGAG+GGG 0.774845 5.1:+80643456 None:intergenic
GGAGACCTTAGCTACCAAGG+AGG 0.785211 5.1:-80643421 MS.gene75791:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAGTTATAATAATCAAA+TGG + chr5.1:80645142-80645161 None:intergenic 10.0%
!! TATATTATAAATGAAATAGA+AGG + chr5.1:80642951-80642970 None:intergenic 10.0%
!!! AAAATGTAAATTATTGTTTT+AGG + chr5.1:80645218-80645237 None:intergenic 10.0%
!! AAAAATTATAGATTGTTTGT+GGG - chr5.1:80644177-80644196 MS.gene75791:CDS 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr5.1:80643764-80643783 MS.gene75791:CDS 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr5.1:80643765-80643784 None:intergenic 15.0%
!! AATCAAAAGCAATTAAATAT+AGG + chr5.1:80643324-80643343 None:intergenic 15.0%
!! CAAATATTACATACAAATTA+AGG + chr5.1:80644546-80644565 None:intergenic 15.0%
!! TTAAATGTTATACAATCATA+TGG + chr5.1:80644916-80644935 None:intergenic 15.0%
!!! ATCACATATAATATTTTCTT+TGG - chr5.1:80644494-80644513 MS.gene75791:CDS 15.0%
!!! ATGAAAATAATTTTGATGAA+AGG + chr5.1:80644802-80644821 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr5.1:80643891-80643910 MS.gene75791:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr5.1:80643788-80643807 MS.gene75791:CDS 15.0%
!! AAAAAATACAGATTGTTTGT+GGG - chr5.1:80644331-80644350 MS.gene75791:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr5.1:80643774-80643793 None:intergenic 20.0%
!! AAAGAAAATGAAATTGAAGT+TGG + chr5.1:80645265-80645284 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr5.1:80643731-80643750 MS.gene75791:CDS 20.0%
!! ACAAAATGCATAAAAAAAGA+AGG + chr5.1:80643111-80643130 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr5.1:80643851-80643870 MS.gene75791:intron 20.0%
!! GAAAAATTATAGATTGTTTG+TGG - chr5.1:80644176-80644195 MS.gene75791:CDS 20.0%
!! TTATTCTTGTTCATGAATAA+GGG + chr5.1:80646052-80646071 None:intergenic 20.0%
!!! TTGTTTTTTCTGTTTCATAT+AGG - chr5.1:80645322-80645341 MS.gene75791:intron 20.0%
!!! TTTTTGTAACAAACAACAAT+GGG - chr5.1:80645815-80645834 MS.gene75791:intron 20.0%
! AACATTTAATTGCATTACAC+AGG - chr5.1:80644927-80644946 MS.gene75791:intron 25.0%
! AAGGAGGATAACTTATTAAT+CGG - chr5.1:80643551-80643570 MS.gene75791:CDS 25.0%
! AATCTCTACCCAATAATTAT+AGG - chr5.1:80643996-80644015 MS.gene75791:intron 25.0%
! ACAATTATCACATTGAACTT+CGG + chr5.1:80645289-80645308 None:intergenic 25.0%
! ACAATTCATGAGATGAAAAA+AGG + chr5.1:80643297-80643316 None:intergenic 25.0%
! CTTAATTTATTCCAAGTAGT+TGG - chr5.1:80645915-80645934 MS.gene75791:CDS 25.0%
! GAAAAAATACAGATTGTTTG+TGG - chr5.1:80644330-80644349 MS.gene75791:intron 25.0%
! GAATGATATATTACGTTATG+TGG - chr5.1:80644131-80644150 MS.gene75791:CDS 25.0%
! GTCTGAATTAGATTATGATT+TGG - chr5.1:80646312-80646331 MS.gene75791:CDS 25.0%
! GTTATTCTTGTTCATGAATA+AGG + chr5.1:80646053-80646072 None:intergenic 25.0%
! TATAACTAAATATTTGTCCC+TGG - chr5.1:80645151-80645170 MS.gene75791:intron 25.0%
! TATTCTTGTTCATGAATAAG+GGG + chr5.1:80646051-80646070 None:intergenic 25.0%
! TGTAACTTTGATTGTATTTC+AGG - chr5.1:80643003-80643022 MS.gene75791:CDS 25.0%
! TGTATTTCAGGAAAATGATT+TGG - chr5.1:80643015-80643034 MS.gene75791:CDS 25.0%
!! GTTTTTGTAACAAACAACAA+TGG - chr5.1:80645814-80645833 MS.gene75791:intron 25.0%
!! TGGTCATTTACAAAAAGTAT+AGG - chr5.1:80643969-80643988 MS.gene75791:intron 25.0%
!!! AAGAGCATTTACAATAAAAG+GGG + chr5.1:80642909-80642928 None:intergenic 25.0%
!!! ATACTTTTTGTAAATGACCA+CGG + chr5.1:80643969-80643988 None:intergenic 25.0%
!!! GAAGAGCATTTACAATAAAA+GGG + chr5.1:80642910-80642929 None:intergenic 25.0%
!!! TCCTAATTGTGTTTTTTTAG+CGG + chr5.1:80644069-80644088 None:intergenic 25.0%
!!! TGAAGAGCATTTACAATAAA+AGG + chr5.1:80642911-80642930 None:intergenic 25.0%
!!! TTTTGTTTCTTGGAATTTGA+AGG - chr5.1:80643156-80643175 MS.gene75791:intron 25.0%
AAAGATGTATGATCCAATTC+TGG + chr5.1:80644413-80644432 None:intergenic 30.0%
AAATTTACGGATTCGATTCA+GGG - chr5.1:80645042-80645061 MS.gene75791:intron 30.0%
AAGAGTAGCATTCAAAAGAT+AGG + chr5.1:80644384-80644403 None:intergenic 30.0%
AAGGGATGTTATAAACCAAT+CGG + chr5.1:80644610-80644629 None:intergenic 30.0%
AATTGAAACGCATTTGTATG+TGG - chr5.1:80645624-80645643 MS.gene75791:intron 30.0%
AATTGGATCATACATCTTTC+TGG - chr5.1:80644414-80644433 MS.gene75791:CDS 30.0%
ACAAATTTCTCTCCCATATT+TGG + chr5.1:80644663-80644682 None:intergenic 30.0%
ATTATAGGTCTGCAACAAAT+TGG - chr5.1:80644011-80644030 MS.gene75791:intron 30.0%
ATTTCACTTCTATCATATCC+AGG - chr5.1:80644460-80644479 MS.gene75791:CDS 30.0%
CATAAAAAAAGAAGGTGAGA+AGG + chr5.1:80643103-80643122 None:intergenic 30.0%
CTAGATCAAATTTGATGAAG+TGG - chr5.1:80644288-80644307 MS.gene75791:intron 30.0%
GAAAAGGAAAGAAAAGAACT+TGG - chr5.1:80645393-80645412 MS.gene75791:intron 30.0%
GATTAATAAGTTATCCTCCT+TGG + chr5.1:80643552-80643571 None:intergenic 30.0%
GGTGGAAAAATTTACATGTA+AGG - chr5.1:80645430-80645449 MS.gene75791:intron 30.0%
GTTGCAGACCTATAATTATT+GGG + chr5.1:80644007-80644026 None:intergenic 30.0%
TCCGCTAAAAAAACACAATT+AGG - chr5.1:80644065-80644084 MS.gene75791:CDS 30.0%
TCGGCTAAAATAACTCAATT+AGG - chr5.1:80644260-80644279 MS.gene75791:intron 30.0%
TGAACAAGAATAACATGACA+TGG - chr5.1:80646059-80646078 MS.gene75791:intron 30.0%
TGATAATTAATGTGACTGAC+AGG - chr5.1:80645513-80645532 MS.gene75791:intron 30.0%
TGCTACAATAACTAGTATGT+TGG + chr5.1:80644880-80644899 None:intergenic 30.0%
TGTTGCAGACCTATAATTAT+TGG + chr5.1:80644008-80644027 None:intergenic 30.0%
TGTTTCATATAGGTTTGAAC+CGG - chr5.1:80645332-80645351 MS.gene75791:intron 30.0%
TTTGGACAATTATAGAAAGC+AGG - chr5.1:80646330-80646349 MS.gene75791:CDS 30.0%
! AGAAGGTAAGCTAGTTTATT+AGG - chr5.1:80645862-80645881 MS.gene75791:intron 30.0%
! ATTGGTTTATAACATCCCTT+CGG - chr5.1:80644610-80644629 MS.gene75791:intron 30.0%
! GAAAAGAACTTGGTGAAATT+AGG - chr5.1:80645403-80645422 MS.gene75791:intron 30.0%
! GAAGGTAAGCTAGTTTATTA+GGG - chr5.1:80645863-80645882 MS.gene75791:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr5.1:80643682-80643701 None:intergenic 30.0%
!! AGGGAGTATTATATATAGAG+TGG - chr5.1:80643940-80643959 MS.gene75791:intron 30.0%
!! CATATTTCTAACTTTTGCAG+AGG - chr5.1:80643357-80643376 MS.gene75791:CDS 30.0%
!! TACTCTTGTTATTCCAGAAT+TGG - chr5.1:80644397-80644416 MS.gene75791:CDS 30.0%
!! TCGATCTTCTTTTTGTTTCT+TGG - chr5.1:80643146-80643165 MS.gene75791:CDS 30.0%
!!! ATTGAGTTATTTTAGCCGAA+TGG + chr5.1:80644259-80644278 None:intergenic 30.0%
!!! ATTGTGTTTTTTTAGCGGAA+TGG + chr5.1:80644064-80644083 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr5.1:80643683-80643702 MS.gene75791:intron 30.0%
!!! TTGTGTTTTTTTAGCGGAAT+GGG + chr5.1:80644063-80644082 None:intergenic 30.0%
AACAAACAACAATGGGAACA+TGG - chr5.1:80645822-80645841 MS.gene75791:intron 35.0%
AACAGAAAAAACAAGCAGTC+TGG + chr5.1:80645316-80645335 None:intergenic 35.0%
AACATGGCTAAAATTCTAGC+TGG - chr5.1:80645838-80645857 MS.gene75791:intron 35.0%
AACTCTTATGTCATTCCGAA+GGG + chr5.1:80644628-80644647 None:intergenic 35.0%
AAGGCAATAAGGTAGAAAAC+AGG - chr5.1:80646254-80646273 MS.gene75791:CDS 35.0%
AATCCGTAAATTTGAGAGCA+TGG + chr5.1:80645035-80645054 None:intergenic 35.0%
AGAAAGTAAGAAGACATGGA+AGG - chr5.1:80645548-80645567 MS.gene75791:intron 35.0%
AGCGTGTAAGTGTCTAATTA+AGG - chr5.1:80644763-80644782 MS.gene75791:CDS 35.0%
ATGATGATCTACAAAAGCTG+AGG - chr5.1:80644995-80645014 MS.gene75791:intron 35.0%
ATGTGATTTAAGAGACATCC+TGG + chr5.1:80644481-80644500 None:intergenic 35.0%
ATTCAGACTTTCTCTGTTGT+AGG - chr5.1:80645975-80645994 MS.gene75791:intron 35.0%
ATTGCATTACACAGGTTGTT+CGG - chr5.1:80644935-80644954 MS.gene75791:intron 35.0%
CAAATTGATACGAAAGCTCT+AGG - chr5.1:80645239-80645258 MS.gene75791:intron 35.0%
CAAATTTACGGATTCGATTC+AGG - chr5.1:80645041-80645060 MS.gene75791:intron 35.0%
CATGAGATGAAAAAAGGACT+GGG + chr5.1:80643291-80643310 None:intergenic 35.0%
CCAAATAGAAACCAACTACT+TGG + chr5.1:80645929-80645948 None:intergenic 35.0%
CTACCATGCTCTCAAATTTA+CGG - chr5.1:80645029-80645048 MS.gene75791:intron 35.0%
CTCAATTATTTGATGCCGAT+TGG - chr5.1:80644592-80644611 MS.gene75791:intron 35.0%
CTTAAATCAACAGAGAACAG+GGG - chr5.1:80643432-80643451 MS.gene75791:CDS 35.0%
CTTGCATATGTCAAAACTCA+GGG - chr5.1:80646182-80646201 MS.gene75791:intron 35.0%
GAAAAGAAAGAGAAGGCAAA+CGG + chr5.1:80642861-80642880 None:intergenic 35.0%
GCATGATGAAAAGAAAGAGA+AGG + chr5.1:80642868-80642887 None:intergenic 35.0%
GCATTTACAATAAAAGGGGA+AGG + chr5.1:80642905-80642924 None:intergenic 35.0%
GCTTAAATCAACAGAGAACA+GGG - chr5.1:80643431-80643450 MS.gene75791:CDS 35.0%
GGATACCTAACTTACAATGT+TGG + chr5.1:80644859-80644878 None:intergenic 35.0%
GTAAAGCAGCTACCAAATAT+GGG - chr5.1:80644648-80644667 MS.gene75791:intron 35.0%
GTCTAATTAAGGTCCCTAAT+CGG - chr5.1:80644774-80644793 MS.gene75791:CDS 35.0%
GTCTGAATATCAGTATGTGT+AGG + chr5.1:80645963-80645982 None:intergenic 35.0%
GTGAAGAGAAAGACACAAAT+GGG + chr5.1:80645753-80645772 None:intergenic 35.0%
TAGAAGGTAGTTGAAGTAGA+AGG + chr5.1:80642935-80642954 None:intergenic 35.0%
TCATGAGATGAAAAAAGGAC+TGG + chr5.1:80643292-80643311 None:intergenic 35.0%
TCTTGCATATGTCAAAACTC+AGG - chr5.1:80646181-80646200 MS.gene75791:intron 35.0%
TGAAGAGAAAGACACAAATG+GGG + chr5.1:80645752-80645771 None:intergenic 35.0%
TGAAGTGGATGCAATATTTC+TGG - chr5.1:80644303-80644322 MS.gene75791:intron 35.0%
TGAGAAGGTTGTTTGATTAC+CGG + chr5.1:80643088-80643107 None:intergenic 35.0%
TGGTTCCAACATTGTAAGTT+AGG - chr5.1:80644851-80644870 MS.gene75791:intron 35.0%
TGTAAAGCAGCTACCAAATA+TGG - chr5.1:80644647-80644666 MS.gene75791:intron 35.0%
TGTGGATGATGCAATATTTC+TGG - chr5.1:80644149-80644168 MS.gene75791:CDS 35.0%
TTCTTTCTCTTCACTGATGA+TGG + chr5.1:80642737-80642756 None:intergenic 35.0%
TTGATGAAAGGTTCCGATTA+GGG + chr5.1:80644790-80644809 None:intergenic 35.0%
TTGATTACCGGAATGTGAAA+TGG + chr5.1:80643076-80643095 None:intergenic 35.0%
TTTACTTGCAAAGTTGACAC+CGG + chr5.1:80643254-80643273 None:intergenic 35.0%
TTTGATGAAAGGTTCCGATT+AGG + chr5.1:80644791-80644810 None:intergenic 35.0%
TTTGTGGGTGCAAGAATTAT+AGG - chr5.1:80644192-80644211 MS.gene75791:CDS 35.0%
! AACTTGGTGAAATTAGGAAG+CGG - chr5.1:80645409-80645428 MS.gene75791:intron 35.0%
! CCAAGTAGTTGGTTTCTATT+TGG - chr5.1:80645926-80645945 MS.gene75791:CDS 35.0%
! CTAAAATTCTAGCTGGAAGA+AGG - chr5.1:80645845-80645864 MS.gene75791:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr5.1:80643813-80643832 MS.gene75791:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr5.1:80643817-80643836 MS.gene75791:intron 35.0%
! TTTTGACATATGCAAGACGT+TGG + chr5.1:80646178-80646197 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr5.1:80643881-80643900 MS.gene75791:intron 35.0%
!! ATGCGTTTGATTTTGAGGAT+TGG + chr5.1:80646233-80646252 None:intergenic 35.0%
!! CAGATTTTGTATGTGCCATT+CGG - chr5.1:80644241-80644260 MS.gene75791:intron 35.0%
!!! GGTTCAACTTTTTTCCGTTA+GGG + chr5.1:80646030-80646049 None:intergenic 35.0%
AGAATACTTGCACTTCAGCT+TGG + chr5.1:80646408-80646427 None:intergenic 40.0%
AGGCAAATGAAGCTACTTAC+AGG - chr5.1:80643176-80643195 MS.gene75791:intron 40.0%
CAACTCTTATGTCATTCCGA+AGG + chr5.1:80644629-80644648 None:intergenic 40.0%
CATATGTCAAAACTCAGGGT+CGG - chr5.1:80646186-80646205 MS.gene75791:intron 40.0%
CCATGTCTTCTTACTTTCTC+AGG + chr5.1:80645547-80645566 None:intergenic 40.0%
CCTCAAAATCAAACGCATGA+AGG - chr5.1:80646235-80646254 MS.gene75791:intron 40.0%
CCTGAGAAAGTAAGAAGACA+TGG - chr5.1:80645544-80645563 MS.gene75791:intron 40.0%
CGTGAAGAGAAAGACACAAA+TGG + chr5.1:80645754-80645773 None:intergenic 40.0%
CTACAGACTTTCTAATCTGC+TGG - chr5.1:80644972-80644991 MS.gene75791:intron 40.0%
CTACTTACAGGCATGATCTA+TGG - chr5.1:80643188-80643207 MS.gene75791:intron 40.0%
CTTTCCCAACTTCCATTCAA+AGG - chr5.1:80645699-80645718 MS.gene75791:intron 40.0%
GATCGAATTTGACGAATGAG+TGG - chr5.1:80644096-80644115 MS.gene75791:CDS 40.0%
GCAGATAATTGATGCTGTTG+TGG - chr5.1:80644355-80644374 MS.gene75791:intron 40.0%
GCTGAAGAATGGCATATCAA+AGG + chr5.1:80645179-80645198 None:intergenic 40.0%
GGCTAATACCAAAACTCATC+CGG - chr5.1:80643378-80643397 MS.gene75791:CDS 40.0%
GGCTTAAATCAACAGAGAAC+AGG - chr5.1:80643430-80643449 MS.gene75791:CDS 40.0%
GTCTCCTTTGAATGGAAGTT+GGG + chr5.1:80645706-80645725 None:intergenic 40.0%
GTTTCATCGCGCTACATTTA+AGG - chr5.1:80645109-80645128 MS.gene75791:intron 40.0%
TAGCTAAGGTCTCCTTTGAA+TGG + chr5.1:80645714-80645733 None:intergenic 40.0%
TCAAACGCATGAAGGCAATA+AGG - chr5.1:80646243-80646262 MS.gene75791:intron 40.0%
TCAGGGAATGGGAAATTTGT+TGG - chr5.1:80645059-80645078 MS.gene75791:intron 40.0%
TGAATGTATAGAGCAGTCCA+AGG - chr5.1:80643532-80643551 MS.gene75791:CDS 40.0%
TTGGTCAGTACCCATTAGAA+GGG + chr5.1:80646389-80646408 None:intergenic 40.0%
! CATCTTTCTGGAAAGACAAC+AGG - chr5.1:80644426-80644445 MS.gene75791:CDS 40.0%
! GCATTCTCTGGTTGCTATTA+TGG - chr5.1:80645363-80645382 MS.gene75791:intron 40.0%
! GCTTCTGGAGAAATATATGG+AGG - chr5.1:80645646-80645665 MS.gene75791:intron 40.0%
! GTGGCTTCTGGAGAAATATA+TGG - chr5.1:80645643-80645662 MS.gene75791:intron 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr5.1:80643816-80643835 MS.gene75791:intron 40.0%
! TACTTGTTAATCGCAACCAG+TGG - chr5.1:80643406-80643425 MS.gene75791:CDS 40.0%
! TCTCTGGTTGCTATTATGGT+GGG - chr5.1:80645367-80645386 MS.gene75791:intron 40.0%
! TTCTCTGGTTGCTATTATGG+TGG - chr5.1:80645366-80645385 MS.gene75791:intron 40.0%
!! CCTTCATGCGTTTGATTTTG+AGG + chr5.1:80646238-80646257 None:intergenic 40.0%
!! GCGATTAACAAGTATCGATC+CGG + chr5.1:80643400-80643419 None:intergenic 40.0%
!! TGGGAAATTTGTTGGTTGAG+CGG - chr5.1:80645067-80645086 MS.gene75791:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr5.1:80643921-80643940 MS.gene75791:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr5.1:80643940-80643921 None:intergenic 40.0%
!!! GGGTTCAACTTTTTTCCGTT+AGG + chr5.1:80646031-80646050 None:intergenic 40.0%
!!! TCAACTTTTTTCCGTTAGGG+CGG + chr5.1:80646027-80646046 None:intergenic 40.0%
AAAGAGAAGGCAAACGGAGA+TGG + chr5.1:80642855-80642874 None:intergenic 45.0%
AAAGGAGACCTTAGCTACCA+AGG - chr5.1:80645717-80645736 MS.gene75791:CDS 45.0%
AACTTTCCAGGTAGGCTTCA+TGG - chr5.1:80646105-80646124 MS.gene75791:CDS 45.0%
ACGCATTTGTATGTGGCTTC+TGG - chr5.1:80645631-80645650 MS.gene75791:intron 45.0%
ACGGATTCGATTCAGGGAAT+GGG - chr5.1:80645048-80645067 MS.gene75791:intron 45.0%
ACTTTCCAGGTAGGCTTCAT+GGG - chr5.1:80646106-80646125 MS.gene75791:CDS 45.0%
AGAAAGCAGGTTCAGCTCAA+AGG - chr5.1:80646343-80646362 MS.gene75791:CDS 45.0%
AGCATAAGACCAACTTCCTC+TGG + chr5.1:80645586-80645605 None:intergenic 45.0%
ATCTACAAAAGCTGAGGTGC+AGG - chr5.1:80645001-80645020 MS.gene75791:intron 45.0%
ATCTCGAGTTCGAACTTTCC+AGG - chr5.1:80646093-80646112 MS.gene75791:CDS 45.0%
ATGTATAGAGCAGTCCAAGG+AGG - chr5.1:80643535-80643554 MS.gene75791:CDS 45.0%
CAGACTTTCTCTGTTGTAGG+AGG - chr5.1:80645978-80645997 MS.gene75791:intron 45.0%
CATAAGACCAACTTCCTCTG+GGG + chr5.1:80645584-80645603 None:intergenic 45.0%
CATATACAGTGCGTGTTCCA+AGG - chr5.1:80644688-80644707 MS.gene75791:intron 45.0%
CCAGAGAATGCAAGCATATC+CGG + chr5.1:80645354-80645373 None:intergenic 45.0%
CTTAGCTACCAAGGAGGAAT+TGG - chr5.1:80645726-80645745 MS.gene75791:CDS 45.0%
CTTGGAACACGCACTGTATA+TGG + chr5.1:80644690-80644709 None:intergenic 45.0%
CTTGGTCAGTACCCATTAGA+AGG + chr5.1:80646390-80646409 None:intergenic 45.0%
GAAAAAAGGACTGGGAGTCT+AGG + chr5.1:80643283-80643302 None:intergenic 45.0%
GACAAGTCCAGAAGACTCAT+CGG - chr5.1:80642773-80642792 MS.gene75791:CDS 45.0%
GCAATCGCCATTTCACATTC+CGG - chr5.1:80643066-80643085 MS.gene75791:CDS 45.0%
GCATAAGACCAACTTCCTCT+GGG + chr5.1:80645585-80645604 None:intergenic 45.0%
GCTGATCACATGCTGAAGAA+TGG + chr5.1:80645190-80645209 None:intergenic 45.0%
GGTCTCCTTTGAATGGAAGT+TGG + chr5.1:80645707-80645726 None:intergenic 45.0%
TACGGATTCGATTCAGGGAA+TGG - chr5.1:80645047-80645066 MS.gene75791:intron 45.0%
TATATATAGAGTGGCGACCG+TGG - chr5.1:80643949-80643968 MS.gene75791:intron 45.0%
TCTACAAAAGCTGAGGTGCA+GGG - chr5.1:80645002-80645021 MS.gene75791:intron 45.0%
TGGAGAAATATATGGAGGCG+AGG - chr5.1:80645651-80645670 MS.gene75791:intron 45.0%
TGGTCAGTACCCATTAGAAG+GGG + chr5.1:80646388-80646407 None:intergenic 45.0%
TGTGTCTTTCTCTTCACGCA+TGG - chr5.1:80645756-80645775 MS.gene75791:CDS 45.0%
TTCTCTGCCTGTAGTAATGC+CGG - chr5.1:80643232-80643251 MS.gene75791:intron 45.0%
TTGGTGAAATTAGGAAGCGG+TGG - chr5.1:80645412-80645431 MS.gene75791:intron 45.0%
TTGTTAATCGCAACCAGTGG+AGG - chr5.1:80643409-80643428 MS.gene75791:CDS 45.0%
! CAATTCCTCCTTGGTAGCTA+AGG + chr5.1:80645728-80645747 None:intergenic 45.0%
! CTATTATGGTGGGGGAGAAA+AGG - chr5.1:80645377-80645396 MS.gene75791:intron 45.0%
! CTCTGGTTGCTATTATGGTG+GGG - chr5.1:80645368-80645387 MS.gene75791:intron 45.0%
! GGTCTTATGCTTAGAGCACT+AGG - chr5.1:80645595-80645614 MS.gene75791:intron 45.0%
! TCTGGTTGCTATTATGGTGG+GGG - chr5.1:80645369-80645388 MS.gene75791:intron 45.0%
!! AATGGCATATCAAAGGCACC+AGG + chr5.1:80645172-80645191 None:intergenic 45.0%
!! ATGGCATATCAAAGGCACCA+GGG + chr5.1:80645171-80645190 None:intergenic 45.0%
!! CTCTGTTGTAGGAGGTACTT+TGG - chr5.1:80645986-80646005 MS.gene75791:intron 45.0%
!! CTGTTGATTTAAGCCTCCAC+TGG + chr5.1:80643425-80643444 None:intergenic 45.0%
!! GTATCGATCCGGATGAGTTT+TGG + chr5.1:80643389-80643408 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr5.1:80643920-80643939 MS.gene75791:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr5.1:80643939-80643920 None:intergenic 45.0%
!!! AATTTTATTAATAAAAATTG+TGG - chr5.1:80644831-80644850 MS.gene75791:intron 5.0%
!!! AATTTTTATTAATAAAATTG+AGG + chr5.1:80644830-80644849 None:intergenic 5.0%
!!! ATTTTTATTAATAAAATTGA+GGG + chr5.1:80644829-80644848 None:intergenic 5.0%
AAACCTACCATCCGCCCTAA+CGG - chr5.1:80646013-80646032 MS.gene75791:intron 50.0%
AAATGGGGCCAATTCCTCCT+TGG + chr5.1:80645737-80645756 None:intergenic 50.0%
AAGGAGTCCGATGAGTCTTC+TGG + chr5.1:80642783-80642802 None:intergenic 50.0%
AGGGTCGGAGGTAAAAACTG+AGG - chr5.1:80646201-80646220 MS.gene75791:intron 50.0%
AGTTGGGAAAGAGAGCTCTG+AGG + chr5.1:80645690-80645709 None:intergenic 50.0%
ATGTCAAAACTCAGGGTCGG+AGG - chr5.1:80646189-80646208 MS.gene75791:intron 50.0%
CCGGATATGCTTGCATTCTC+TGG - chr5.1:80645351-80645370 MS.gene75791:intron 50.0%
CGAGTTCGAACTTTCCAGGT+AGG - chr5.1:80646097-80646116 MS.gene75791:CDS 50.0%
CTGCCTGACCTCAACTCATT+AGG + chr5.1:80646136-80646155 None:intergenic 50.0%
GGGTCGGAGGTAAAAACTGA+GGG - chr5.1:80646202-80646221 MS.gene75791:intron 50.0%
GGTCAGTACCCATTAGAAGG+GGG + chr5.1:80646387-80646406 None:intergenic 50.0%
GTTGACACCGGCATTACTAC+AGG + chr5.1:80643242-80643261 None:intergenic 50.0%
TGGGAGAGCCTAATGAGTTG+AGG - chr5.1:80646125-80646144 MS.gene75791:intron 50.0%
! AATGAGTTGAGGTCAGGCAG+TGG - chr5.1:80646136-80646155 MS.gene75791:intron 50.0%
! CATTTGGGGGTGCATTTCCT+TGG + chr5.1:80644708-80644727 None:intergenic 50.0%
! GAGCCTAATGAGTTGAGGTC+AGG - chr5.1:80646130-80646149 MS.gene75791:intron 50.0%
! GTTGGGAAAGAGAGCTCTGA+GGG + chr5.1:80645689-80645708 None:intergenic 50.0%
!! AAACGGAGATGGCGGAAATG+AGG + chr5.1:80642844-80642863 None:intergenic 50.0%
!! TTGGGAAAGAGAGCTCTGAG+GGG + chr5.1:80645688-80645707 None:intergenic 50.0%
!!! CTTTTTTCCGTTAGGGCGGA+TGG + chr5.1:80646023-80646042 None:intergenic 50.0%
AACGCGACCCTCGTAGCATT+TGG + chr5.1:80644724-80644743 None:intergenic 55.0%
ACACGCTTCTTGACCAGCAC+TGG + chr5.1:80644750-80644769 None:intergenic 55.0%
ACGCGACCCTCGTAGCATTT+GGG + chr5.1:80644723-80644742 None:intergenic 55.0%
ATGCACCCCCAAATGCTACG+AGG - chr5.1:80644713-80644732 MS.gene75791:intron 55.0%
CACTCTCGTACTTCCTCAGC+AGG + chr5.1:80646292-80646311 None:intergenic 55.0%
CCACTTACCCCAGAGGAAGT+TGG - chr5.1:80645574-80645593 MS.gene75791:intron 55.0%
GACAGAAAACCAGCCTGCTG+AGG - chr5.1:80646276-80646295 MS.gene75791:CDS 55.0%
GAGAAGGCAAACGGAGATGG+CGG + chr5.1:80642852-80642871 None:intergenic 55.0%
GAGTCGCTCCCCCTTCTAAT+GGG - chr5.1:80646376-80646395 MS.gene75791:CDS 55.0%
GGAGACCTTAGCTACCAAGG+AGG - chr5.1:80645720-80645739 MS.gene75791:CDS 55.0%
GGCGAAGGAAACTGGCAAGA+AGG + chr5.1:80642802-80642821 None:intergenic 55.0%
TGAGTCGCTCCCCCTTCTAA+TGG - chr5.1:80646375-80646394 MS.gene75791:CDS 55.0%
TGCACCCCCAAATGCTACGA+GGG - chr5.1:80644714-80644733 MS.gene75791:intron 55.0%
TTTCCGTTAGGGCGGATGGT+AGG + chr5.1:80646019-80646038 None:intergenic 55.0%
! AAGGTGTCCACTTACCCCAG+AGG - chr5.1:80645567-80645586 MS.gene75791:intron 55.0%
! CTGCTGAGGAAGTACGAGAG+TGG - chr5.1:80646290-80646309 MS.gene75791:CDS 55.0%
!! CCAACTTCCTCTGGGGTAAG+TGG + chr5.1:80645577-80645596 None:intergenic 55.0%
CGCGACCCTCGTAGCATTTG+GGG + chr5.1:80644722-80644741 None:intergenic 60.0%
CTCGTACTTCCTCAGCAGGC+TGG + chr5.1:80646288-80646307 None:intergenic 60.0%
GAGACGACGGCGAAGGAAAC+TGG + chr5.1:80642810-80642829 None:intergenic 60.0%
GATGGATGAGACGACGGCGA+AGG + chr5.1:80642817-80642836 None:intergenic 60.0%
GCGACCCTCGTAGCATTTGG+GGG + chr5.1:80644721-80644740 None:intergenic 60.0%
GCTCTCCCATGAAGCCTACC+TGG + chr5.1:80646114-80646133 None:intergenic 60.0%
GGAGGCGATGGATGAGACGA+CGG + chr5.1:80642823-80642842 None:intergenic 60.0%
TGGCGGAAATGAGGAGGCGA+TGG + chr5.1:80642835-80642854 None:intergenic 60.0%
! GGGTCGCGTTTTACCAGTGC+TGG - chr5.1:80644734-80644753 MS.gene75791:CDS 60.0%
!! AGAGAGCTCTGAGGGGTGCT+AGG + chr5.1:80645681-80645700 None:intergenic 60.0%
!! CGGAGATGGCGGAAATGAGG+AGG + chr5.1:80642841-80642860 None:intergenic 60.0%
!! GAGAGCTCTGAGGGGTGCTA+GGG + chr5.1:80645680-80645699 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 80642725 80646438 80642725 ID=MS.gene75791
chr5.1 mRNA 80642725 80646438 80642725 ID=MS.gene75791.t1;Parent=MS.gene75791
chr5.1 exon 80646247 80646438 80646247 ID=MS.gene75791.t1.exon1;Parent=MS.gene75791.t1
chr5.1 CDS 80646247 80646438 80646247 ID=cds.MS.gene75791.t1;Parent=MS.gene75791.t1
chr5.1 exon 80646076 80646138 80646076 ID=MS.gene75791.t1.exon2;Parent=MS.gene75791.t1
chr5.1 CDS 80646076 80646138 80646076 ID=cds.MS.gene75791.t1;Parent=MS.gene75791.t1
chr5.1 exon 80645895 80645985 80645895 ID=MS.gene75791.t1.exon3;Parent=MS.gene75791.t1
chr5.1 CDS 80645895 80645985 80645895 ID=cds.MS.gene75791.t1;Parent=MS.gene75791.t1
chr5.1 exon 80645710 80645786 80645710 ID=MS.gene75791.t1.exon4;Parent=MS.gene75791.t1
chr5.1 CDS 80645710 80645786 80645710 ID=cds.MS.gene75791.t1;Parent=MS.gene75791.t1
chr5.1 exon 80644716 80644804 80644716 ID=MS.gene75791.t1.exon5;Parent=MS.gene75791.t1
chr5.1 CDS 80644716 80644804 80644716 ID=cds.MS.gene75791.t1;Parent=MS.gene75791.t1
chr5.1 exon 80644396 80644579 80644396 ID=MS.gene75791.t1.exon6;Parent=MS.gene75791.t1
chr5.1 CDS 80644396 80644579 80644396 ID=cds.MS.gene75791.t1;Parent=MS.gene75791.t1
chr5.1 exon 80644033 80644214 80644033 ID=MS.gene75791.t1.exon7;Parent=MS.gene75791.t1
chr5.1 CDS 80644033 80644214 80644033 ID=cds.MS.gene75791.t1;Parent=MS.gene75791.t1
chr5.1 exon 80643717 80643819 80643717 ID=MS.gene75791.t1.exon8;Parent=MS.gene75791.t1
chr5.1 CDS 80643717 80643819 80643717 ID=cds.MS.gene75791.t1;Parent=MS.gene75791.t1
chr5.1 exon 80643297 80643628 80643297 ID=MS.gene75791.t1.exon9;Parent=MS.gene75791.t1
chr5.1 CDS 80643297 80643628 80643297 ID=cds.MS.gene75791.t1;Parent=MS.gene75791.t1
chr5.1 exon 80642725 80643166 80642725 ID=MS.gene75791.t1.exon10;Parent=MS.gene75791.t1
chr5.1 CDS 80642725 80643166 80642725 ID=cds.MS.gene75791.t1;Parent=MS.gene75791.t1
Gene Sequence

>MS.gene75791

ATGCATACACCATCATCAGTGAAGAGAAAGAAGAATCACACACACACAGACAAGTCCAGAAGACTCATCGGACTCCTTCTTGCCAGTTTCCTTCGCCGTCGTCTCATCCATCGCCTCCTCATTTCCGCCATCTCCGTTTGCCTTCTCTTTCTTTTCATCATGCTCTCACTCTTCGCTCCTTCCCCTTTTATTGTAAATGCTCTTCATCCTTCTACTTCAACTACCTTCTATTTCATTTATAATATATGCTTTTCGTCATTGCATTGTTCTGTTCTGTGTGTAACTTTGATTGTATTTCAGGAAAATGATTTGGTTAAATCTCGTTTAGATTCTCATCAGCAGCAATCGCCATTTCACATTCCGGTAATCAAACAACCTTCTCACCTTCTTTTTTTATGCATTTTGTGTTATGTTGCTAATATCGATCTTCTTTTTGTTTCTTGGAATTTGAAGGCAAATGAAGCTACTTACAGGCATGATCTATGGAATTCGAGAAACTCACAGCTTTTCTCTGCCTGTAGTAATGCCGGTGTCAACTTTGCAAGTAAACTTCATCCTAGACTCCCAGTCCTTTTTTCATCTCATGAATTGTAATTCCTATATTTAATTGCTTTTGATTGAGCGTATTTATTCATATTTCTAACTTTTGCAGAGGCTAATACCAAAACTCATCCGGATCGATACTTGTTAATCGCAACCAGTGGAGGCTTAAATCAACAGAGAACAGGGGTAATTAAGCTAAGCTTCTTTCTTAATGAACTGTGTCTGTGCTGTTGCTTTGTTTATGCAATCTTTTTAGTCAAGTAATGAATGTATAGAGCAGTCCAAGGAGGATAACTTATTAATCGGAATATGTACTTCTTTCTACATGTAACTAATTGTTTTATTTGAGTATGAATATTTCTTTCATTTGTTCAATTAGTAAACTTAATTGCATTCAAAATACTACTCCCTCCGTTTCAAAATGAGTGTCGTTTTAGGTGTTTACACACATATTAAGAAATGTAATGATTAAAAGAAAGAGAATGGTTATTTTACCAAATTATCCTTATTAACTATTGGTTAGTTTTAAAAGTAATACTTTGGAAGTAGTGTGCAGAGTATTAATTGGAGGGTACAATTGAAAAGAAAAAGTTATTATTGCATTGGAAACTGAAAGCGACACTCATTTTGAAACAAATTTTTTTGGCTAAAGCGACACTCATTTTGAAACGGAGGGAGTATTATATATAGAGTGGCGACCGTGGTCATTTACAAAAAGTATAGGTTGAAATCTCTACCCAATAATTATAGGTCTGCAACAAATTGGTGATTTGCTATACAGATTTTGTGTGTCCCATTCCGCTAAAAAAACACAATTAGGATTTTCTTGATCGAATTTGACGAATGAGTGGTGATACGAATTTGAATGATATATTACGTTATGTGGATGATGCAATATTTCTGGTATTGAAAAATTATAGATTGTTTGTGGGTGCAAGAATTATAGGTCTGCAAAAATTAGTGATTTGATATACAGATTTTGTATGTGCCATTCGGCTAAAATAACTCAATTAGGATTTTCTAGATCAAATTTGATGAAGTGGATGCAATATTTCTGGCATTGAAAAAATACAGATTGTTTGTGGGTGCAGATAATTGATGCTGTTGTGGCTGCCTATCTTTTGAATGCTACTCTTGTTATTCCAGAATTGGATCATACATCTTTCTGGAAAGACAACAGGTCTGTGTTTACATTTCACTTCTATCATATCCAGGATGTCTCTTAAATCACATATAATATTTTCTTTGGTAGCAGAACACATTTGTCATTGTACTCCTTAATTTGTATGTAATATTTGATTATTATTTTTTTGCAGCAATTTTTCTCAATTATTTGATGCCGATTGGTTTATAACATCCCTTCGGAATGACATAAGAGTTGTAAAGCAGCTACCAAATATGGGAGAGAAATTTGTGACTCCATATACAGTGCGTGTTCCAAGGAAATGCACCCCCAAATGCTACGAGGGTCGCGTTTTACCAGTGCTGGTCAAGAAGCGTGTAAGTGTCTAATTAAGGTCCCTAATCGGAACCTTTCATCAAAATTATTTTCATGTATCCCTCAATTTTATTAATAAAAATTGTGGTTCCAACATTGTAAGTTAGGTATCCAACATACTAGTTATTGTAGCAAGTTGTGTTGATGCCATATGATTGTATAACATTTAATTGCATTACACAGGTTGTTCGGCTCACGAAGTTTGACTACAGACTTTCTAATCTGCTGGATGATGATCTACAAAAGCTGAGGTGCAGGGTAAACTACCATGCTCTCAAATTTACGGATTCGATTCAGGGAATGGGAAATTTGTTGGTTGAGCGGATGAGAATGAAAAGCATGCGTTTCATCGCGCTACATTTAAGGTAAGATTCCATTTGATTATTATAACTAAATATTTGTCCCTGGTGCCTTTGATATGCCATTCTTCAGCATGTGATCAGCTAAATCCTAAAACAATAATTTACATTTTTCAAATTGATACGAAAGCTCTAGGCCAACTTCAATTTCATTTTCTTTTCCGAAGTTCAATGTGATAATTGTTGATCCAGACTGCTTGTTTTTTCTGTTTCATATAGGTTTGAACCGGATATGCTTGCATTCTCTGGTTGCTATTATGGTGGGGGAGAAAAGGAAAGAAAAGAACTTGGTGAAATTAGGAAGCGGTGGAAAAATTTACATGTAAGGTTCTATTGACATTCAAGATATCTTTATTAACTGTATGAAAATTTGCATAATCTTACTATTTGATAATTAATGTGACTGACAGGCAAGCAATCCTGAGAAAGTAAGAAGACATGGAAGGTGTCCACTTACCCCAGAGGAAGTTGGTCTTATGCTTAGAGCACTAGGTTTTGAAATTGAAACGCATTTGTATGTGGCTTCTGGAGAAATATATGGAGGCGAGGAAACCCTAGCACCCCTCAGAGCTCTCTTTCCCAACTTCCATTCAAAGGAGACCTTAGCTACCAAGGAGGAATTGGCCCCATTTGTGTCTTTCTCTTCACGCATGGCTGCGCTTGATTACATAGTTTGTGATGACAGCGACGTTTTTGTAACAAACAACAATGGGAACATGGCTAAAATTCTAGCTGGAAGAAGGTAAGCTAGTTTATTAGGGCGTGAAATTCTTCTAGCTAGTCTCATGTGCTTAATTTATTCCAAGTAGTTGGTTTCTATTTGGACAGTACTTTTCCTACACATACTGATATTCAGACTTTCTCTGTTGTAGGAGGTACTTTGGTCATAAACCTACCATCCGCCCTAACGGAAAAAAGTTGAACCCCTTATTCATGAACAAGAATAACATGACATGGCAAGAATTTGCATCTCGAGTTCGAACTTTCCAGGTAGGCTTCATGGGAGAGCCTAATGAGTTGAGGTCAGGCAGTGGTGAGTTTCACGAGAATCCAACGTCTTGCATATGTCAAAACTCAGGGTCGGAGGTAAAAACTGAGGGATTTTCCAATCCTCAAAATCAAACGCATGAAGGCAATAAGGTAGAAAACAGGACAGAAAACCAGCCTGCTGAGGAAGTACGAGAGTGGTCTGAATTAGATTATGATTTGGACAATTATAGAAAGCAGGTTCAGCTCAAAGGAACTAATATTGAGTCGCTCCCCCTTCTAATGGGTACTGACCAAGCTGAAGTGCAAGTATTCTTCTCAGATTAG
Protein sequence

>MS.gene75791.t1

MHTPSSVKRKKNHTHTDKSRRLIGLLLASFLRRRLIHRLLISAISVCLLFLFIMLSLFAPSPFIENDLVKSRLDSHQQQSPFHIPANEATYRHDLWNSRNSQLFSACSNAGVNFAKANTKTHPDRYLLIATSGGLNQQRTGIIDAVVAAYLLNATLVIPELDHTSFWKDNSNFSQLFDADWFITSLRNDIRVVKQLPNMGEKFVTPYTVRVPRKCTPKCYEGRVLPVLVKKRVVRLTKFDYRLSNLLDDDLQKLRCRVNYHALKFTDSIQGMGNLLVERMRMKSMRFIALHLRFEPDMLAFSGCYYGGGEKERKELGEIRKRWKNLHASNPEKVRRHGRCPLTPEEVGLMLRALGFEIETHLYVASGEIYGGEETLAPLRALFPNFHSKETLATKEELAPFVSFSSRMAALDYIVCDDSDVFVTNNNGNMAKILAGRRRYFGHKPTIRPNGKKLNPLFMNKNNMTWQEFASRVRTFQVGFMGEPNELRSGSGEFHENPTSCICQNSGSEVKTEGFSNPQNQTHEGNKVENRTENQPAEEVREWSELDYDLDNYRKQVQLKGTNIESLPLLMGTDQAEVQVFFSD