AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75792

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75792.t1 MTR_5g099010 88.756 587 32 4 1 560 1 580 0.0 1038
MS.gene75792.t1 MTR_3g115220 59.959 482 155 5 41 486 20 499 0.0 602
MS.gene75792.t1 MTR_4g100810 56.410 429 158 5 95 495 79 506 2.32e-170 494
MS.gene75792.t1 MTR_5g012770 51.586 473 179 8 40 480 41 495 6.75e-159 463
MS.gene75792.t1 MTR_1g031590 38.724 439 240 9 21 437 46 477 2.24e-92 293
MS.gene75792.t1 MTR_3g099480 40.045 442 236 11 19 441 27 458 1.92e-91 291
MS.gene75792.t1 MTR_5g064620 46.479 355 173 8 96 441 86 432 6.08e-91 289
MS.gene75792.t1 MTR_3g096020 40.090 444 242 8 7 444 85 510 1.28e-89 288
MS.gene75792.t1 MTR_4g084570 37.955 440 244 9 20 437 46 478 1.16e-88 284
MS.gene75792.t1 MTR_5g042200 48.607 323 154 6 127 441 88 406 6.59e-88 280
MS.gene75792.t1 MTR_4g082310 39.443 431 210 10 113 498 80 504 2.44e-85 274
MS.gene75792.t1 MTR_5g059260 44.880 332 164 5 127 441 160 489 1.86e-84 274
MS.gene75792.t1 MTR_4g019210 41.935 372 203 9 75 441 187 550 2.60e-84 275
MS.gene75792.t1 MTR_3g005340 41.047 363 190 6 97 441 123 479 1.13e-83 272
MS.gene75792.t1 MTR_6g016015 44.860 321 170 4 127 441 118 437 1.51e-83 270
MS.gene75792.t1 MTR_2g016470 38.325 394 191 9 96 441 160 549 5.45e-82 268
MS.gene75792.t1 MTR_4g110030 44.548 321 171 5 127 441 119 438 2.40e-80 261
MS.gene75792.t1 MTR_5g081690 37.089 426 248 10 21 441 29 439 6.28e-80 260
MS.gene75792.t1 MTR_4g125460 39.886 351 202 6 95 441 62 407 9.62e-80 259
MS.gene75792.t1 MTR_3g086570 38.539 397 200 12 127 480 153 548 1.96e-79 260
MS.gene75792.t1 MTR_2g059350 39.669 363 202 7 95 441 76 437 5.30e-79 258
MS.gene75792.t1 MTR_4g125460 39.886 351 202 6 95 441 201 546 3.48e-78 258
MS.gene75792.t1 MTR_5g032100 36.049 405 210 10 95 459 60 455 1.64e-73 243
MS.gene75792.t1 MTR_3g100310 34.081 446 228 13 48 441 23 454 4.35e-73 242
MS.gene75792.t1 MTR_3g026650 37.568 370 217 5 89 449 136 500 6.58e-69 232
MS.gene75792.t1 MTR_4g132590 38.268 358 172 7 127 437 68 423 1.12e-67 227
MS.gene75792.t1 MTR_3g026650 37.921 356 207 5 89 435 136 486 1.26e-67 227
MS.gene75792.t1 MTR_4g132590 38.268 358 172 7 127 437 167 522 1.01e-66 227
MS.gene75792.t1 MTR_1g102030 36.088 363 211 8 95 441 61 418 3.55e-64 219
MS.gene75792.t1 MTR_3g086570 41.007 278 147 7 127 387 153 430 8.82e-63 213
MS.gene75792.t1 MTR_4g023030 36.438 365 218 5 89 444 196 555 1.29e-61 214
MS.gene75792.t1 MTR_7g017330 31.152 382 231 11 40 399 19 390 1.28e-42 162
MS.gene75792.t1 MTR_1g101990 39.810 211 122 4 234 441 6 214 6.81e-41 150
MS.gene75792.t1 MTR_3g026650 37.838 222 134 3 89 308 136 355 8.84e-40 149
MS.gene75792.t1 MTR_4g010990 30.514 331 192 9 127 441 78 386 4.91e-39 148
MS.gene75792.t1 MTR_3g092590 28.941 387 248 11 37 403 7 386 2.61e-35 140
MS.gene75792.t1 MTR_4g010990 29.874 318 185 9 140 441 2 297 3.00e-35 136
MS.gene75792.t1 MTR_3g092590 28.941 387 248 11 37 403 7 386 3.42e-35 139
MS.gene75792.t1 MTR_7g064210 48.026 152 65 3 252 391 39 188 1.19e-33 133
MS.gene75792.t1 MTR_1g007390 32.841 271 161 8 152 403 124 392 8.97e-31 127
MS.gene75792.t1 MTR_1g101985 41.346 104 59 1 95 198 61 162 2.10e-20 89.4
MS.gene75792.t1 MTR_4g008200 26.176 340 206 12 125 453 36 341 2.91e-20 93.2
MS.gene75792.t1 MTR_4g008200 26.176 340 206 12 125 453 87 392 6.83e-20 92.8
MS.gene75792.t1 MTR_2g038320 25.312 320 196 9 127 437 95 380 1.65e-18 88.6
MS.gene75792.t1 MTR_1g095680 43.182 88 39 2 246 322 7 94 3.79e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75792.t1 AT1G76270 56.679 524 193 5 34 525 15 536 0.0 600
MS.gene75792.t1 AT4G38390 57.863 496 174 5 41 506 42 532 0.0 597
MS.gene75792.t1 AT1G20550 52.356 573 221 9 30 560 2 564 0.0 581
MS.gene75792.t1 AT4G16650 58.432 421 147 4 95 488 93 512 1.22e-163 477
MS.gene75792.t1 AT4G16650 58.432 421 147 4 95 488 93 512 1.22e-163 477
MS.gene75792.t1 AT1G22460 49.068 322 157 5 127 444 163 481 7.57e-90 288
MS.gene75792.t1 AT2G01480 43.750 336 172 6 127 445 157 492 1.07e-89 286
MS.gene75792.t1 AT2G01480 43.750 336 172 6 127 445 157 492 2.25e-89 286
MS.gene75792.t1 AT5G64600 38.991 436 230 9 29 444 19 438 5.47e-89 284
MS.gene75792.t1 AT1G38065 43.750 352 178 5 110 441 17 368 2.95e-88 280
MS.gene75792.t1 AT1G38065 45.455 330 165 4 127 441 29 358 1.29e-87 278
MS.gene75792.t1 AT1G38131 45.455 330 165 4 127 441 158 487 3.71e-86 278
MS.gene75792.t1 AT1G14970 43.155 336 174 6 127 445 12 347 1.27e-84 269
MS.gene75792.t1 AT1G14970 43.323 337 172 7 127 445 38 373 2.19e-84 270
MS.gene75792.t1 AT1G35510 37.391 460 243 12 22 446 49 498 2.68e-83 270
MS.gene75792.t1 AT1G14970 43.323 337 172 7 127 445 158 493 7.46e-83 269
MS.gene75792.t1 AT1G14020 39.594 394 197 7 128 482 95 486 1.22e-81 264
MS.gene75792.t1 AT5G15740 44.136 324 168 5 127 441 109 428 4.91e-81 263
MS.gene75792.t1 AT5G35570 43.590 351 187 8 96 441 225 569 1.82e-80 265
MS.gene75792.t1 AT3G54100 36.092 435 247 9 21 441 123 540 4.70e-80 264
MS.gene75792.t1 AT2G03280 44.937 316 166 5 128 437 92 405 7.29e-80 259
MS.gene75792.t1 AT2G37980 41.176 357 189 7 95 441 199 544 1.60e-79 262
MS.gene75792.t1 AT3G02250 43.614 321 174 4 127 441 109 428 5.66e-79 258
MS.gene75792.t1 AT5G65470 39.589 389 187 9 95 441 59 441 1.06e-78 256
MS.gene75792.t1 AT3G26370 41.194 335 180 7 127 444 161 495 5.40e-78 256
MS.gene75792.t1 AT1G29200 39.687 383 186 7 98 437 44 424 3.45e-75 247
MS.gene75792.t1 AT1G29200 39.687 383 186 7 98 437 44 424 3.45e-75 247
MS.gene75792.t1 AT1G29200 39.687 383 186 7 98 437 160 540 4.82e-74 247
MS.gene75792.t1 AT2G03280 41.399 343 166 6 128 437 92 432 5.57e-74 244
MS.gene75792.t1 AT1G29200 41.477 352 161 7 129 437 1 350 2.88e-73 240
MS.gene75792.t1 AT4G24530 35.938 384 206 8 95 441 75 455 5.49e-73 242
MS.gene75792.t1 AT1G11990 44.186 301 153 4 127 412 193 493 1.26e-71 240
MS.gene75792.t1 AT1G04910 37.571 354 210 6 95 441 61 410 3.61e-71 237
MS.gene75792.t1 AT1G62330 37.047 359 176 6 127 437 224 580 1.41e-70 239
MS.gene75792.t1 AT5G63390 37.255 357 215 4 95 444 133 487 1.15e-69 234
MS.gene75792.t1 AT5G01100 32.944 428 249 10 39 441 120 534 1.99e-68 233
MS.gene75792.t1 AT2G44500 36.798 356 218 3 95 444 146 500 2.44e-66 226
MS.gene75792.t1 AT1G11990 39.645 338 152 5 127 412 178 515 9.70e-66 225
MS.gene75792.t1 AT3G07900 37.534 365 215 5 94 449 156 516 3.23e-63 218
MS.gene75792.t1 AT1G52630 30.366 382 221 12 77 441 30 383 9.15e-44 161
MS.gene75792.t1 AT3G30300 31.500 400 228 14 23 400 18 393 3.58e-42 161
MS.gene75792.t1 AT3G30300 31.500 400 228 14 23 400 18 393 3.58e-42 161
MS.gene75792.t1 AT3G03810 35.077 325 176 9 98 403 77 385 8.33e-41 157
MS.gene75792.t1 AT3G03810 35.077 325 176 9 98 403 77 385 8.33e-41 157
MS.gene75792.t1 AT3G26370 39.234 209 116 6 127 324 161 369 3.99e-39 147
MS.gene75792.t1 AT1G52630 31.833 311 186 8 140 441 2 295 8.28e-39 145
MS.gene75792.t1 AT2G44500 34.231 260 164 3 95 348 146 404 3.05e-37 143
MS.gene75792.t1 AT3G21190 26.646 319 178 12 127 429 93 371 3.78e-18 87.4

Find 146 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCATCGCGCTACATTTA+AGG 0.117490 5.3:-80344027 MS.gene75792:intron
GCATTCTCTGGTTGCTATTA+TGG 0.145988 5.3:-80343773 MS.gene75792:CDS
TGAAGAGCATTTACAATAAA+AGG 0.154073 5.3:+80346228 None:intergenic
AATTGGATCATACATCTTTC+TGG 0.170645 5.3:-80344722 MS.gene75792:CDS
ACAAATTTCTCTCCCATATT+TGG 0.187446 5.3:+80344476 None:intergenic
CAAATTTACGGATTCGATTC+AGG 0.201483 5.3:-80344095 MS.gene75792:CDS
TGTAAAGCAGCTACCAAATA+TGG 0.220138 5.3:-80344489 MS.gene75792:CDS
CTTGGAACACGCACTGTATA+TGG 0.243424 5.3:+80344449 None:intergenic
CTACCATGCTCTCAAATTTA+CGG 0.290291 5.3:-80344107 MS.gene75792:CDS
CCATGTCTTCTTACTTTCTC+AGG 0.302140 5.3:+80343592 None:intergenic
TTCTTTCTCTTCACTGATGA+TGG 0.313084 5.3:+80346402 None:intergenic
ACGCGACCCTCGTAGCATTT+GGG 0.325695 5.3:+80344416 None:intergenic
GAAAAGAACTTGGTGAAATT+AGG 0.326334 5.3:-80343733 MS.gene75792:CDS
TACTCTTGTTATTCCAGAAT+TGG 0.327689 5.3:-80344739 MS.gene75792:CDS
AAGGAGTCCGATGAGTCTTC+TGG 0.328208 5.3:+80346356 None:intergenic
ACGCATTTGTATGTGGCTTC+TGG 0.336705 5.3:-80343505 MS.gene75792:CDS
TGTATTTCAGGAAAATGATT+TGG 0.337250 5.3:-80346121 MS.gene75792:intron
AACGCGACCCTCGTAGCATT+TGG 0.337594 5.3:+80344415 None:intergenic
CTACTTACAGGCATGATCTA+TGG 0.340612 5.3:-80345948 MS.gene75792:CDS
AAAGATGTATGATCCAATTC+TGG 0.354641 5.3:+80344726 None:intergenic
GTATCGATCCGGATGAGTTT+TGG 0.355722 5.3:+80345750 None:intergenic
AACTTTCCAGGTAGGCTTCA+TGG 0.360105 5.3:-80343032 MS.gene75792:intron
GTCTGAATTAGATTATGATT+TGG 0.365270 5.3:-80342825 MS.gene75792:CDS
GAGACGACGGCGAAGGAAAC+TGG 0.366522 5.3:+80346329 None:intergenic
CTTAGCTACCAAGGAGGAAT+TGG 0.368531 5.3:-80343410 MS.gene75792:CDS
CTTGGTCAGTACCCATTAGA+AGG 0.376857 5.3:+80342750 None:intergenic
AAGAGTAGCATTCAAAAGAT+AGG 0.384573 5.3:+80344755 None:intergenic
ATTCAGACTTTCTCTGTTGT+AGG 0.385301 5.3:-80343161 MS.gene75792:CDS
AGCATAAGACCAACTTCCTC+TGG 0.394026 5.3:+80343553 None:intergenic
CCGGATATGCTTGCATTCTC+TGG 0.396269 5.3:-80343785 MS.gene75792:CDS
TCAAACGCATGAAGGCAATA+AGG 0.398688 5.3:-80342894 MS.gene75792:CDS
CCAGAGAATGCAAGCATATC+CGG 0.399860 5.3:+80343785 None:intergenic
GGCTTAAATCAACAGAGAAC+AGG 0.407017 5.3:-80345706 MS.gene75792:CDS
CTCAATTATTTGATGCCGAT+TGG 0.407362 5.3:-80344544 MS.gene75792:CDS
GCAATCGCCATTTCACATTC+CGG 0.408047 5.3:-80346070 MS.gene75792:intron
GTCTCCTTTGAATGGAAGTT+GGG 0.408062 5.3:+80343433 None:intergenic
AGGCAAATGAAGCTACTTAC+AGG 0.416698 5.3:-80345960 MS.gene75792:CDS
TCAGGGAATGGGAAATTTGT+TGG 0.419141 5.3:-80344077 MS.gene75792:CDS
GTGGCTTCTGGAGAAATATA+TGG 0.419254 5.3:-80343493 MS.gene75792:CDS
ATCTACAAAAGCTGAGGTGC+AGG 0.420709 5.3:-80344135 MS.gene75792:CDS
CTGCCTGACCTCAACTCATT+AGG 0.423475 5.3:+80343004 None:intergenic
GAAGAGCATTTACAATAAAA+GGG 0.426667 5.3:+80346229 None:intergenic
CTACAGACTTTCTAATCTGC+TGG 0.431795 5.3:-80344164 MS.gene75792:CDS
AAATTTACGGATTCGATTCA+GGG 0.431803 5.3:-80344094 MS.gene75792:CDS
GGTCTCCTTTGAATGGAAGT+TGG 0.432592 5.3:+80343432 None:intergenic
CTCTGGTTGCTATTATGGTG+GGG 0.437730 5.3:-80343768 MS.gene75792:CDS
CTGTTGATTTAAGCCTCCAC+TGG 0.440491 5.3:+80345714 None:intergenic
TACGGATTCGATTCAGGGAA+TGG 0.440840 5.3:-80344089 MS.gene75792:CDS
TCTCTGGTTGCTATTATGGT+GGG 0.455204 5.3:-80343769 MS.gene75792:CDS
CTTTCCCAACTTCCATTCAA+AGG 0.456148 5.3:-80343437 MS.gene75792:CDS
ATTGCATTACACAGGTTGTT+CGG 0.456755 5.3:-80344201 MS.gene75792:intron
AGAGAGCTCTGAGGGGTGCT+AGG 0.456987 5.3:+80343458 None:intergenic
CGTGAAGAGAAAGACACAAA+TGG 0.458606 5.3:+80343385 None:intergenic
TTCTCTGCCTGTAGTAATGC+CGG 0.460147 5.3:-80345904 MS.gene75792:CDS
TGTTTCATATAGGTTTGAAC+CGG 0.461614 5.3:-80343804 MS.gene75792:intron
TAGCTAAGGTCTCCTTTGAA+TGG 0.465721 5.3:+80343425 None:intergenic
ACGGATTCGATTCAGGGAAT+GGG 0.465732 5.3:-80344088 MS.gene75792:CDS
TTCTCTGGTTGCTATTATGG+TGG 0.468408 5.3:-80343770 MS.gene75792:CDS
CATCTTTCTGGAAAGACAAC+AGG 0.468808 5.3:-80344710 MS.gene75792:intron
GTGAAGAGAAAGACACAAAT+GGG 0.470665 5.3:+80343386 None:intergenic
CAATTCCTCCTTGGTAGCTA+AGG 0.492942 5.3:+80343411 None:intergenic
GTTGGGAAAGAGAGCTCTGA+GGG 0.493118 5.3:+80343450 None:intergenic
CCAACTTCCTCTGGGGTAAG+TGG 0.493118 5.3:+80343562 None:intergenic
TTTGGACAATTATAGAAAGC+AGG 0.493179 5.3:-80342807 MS.gene75792:CDS
TCTGGTTGCTATTATGGTGG+GGG 0.493967 5.3:-80343767 MS.gene75792:CDS
GGTCTTATGCTTAGAGCACT+AGG 0.494580 5.3:-80343541 MS.gene75792:CDS
CTAAAATTCTAGCTGGAAGA+AGG 0.494617 5.3:-80343291 MS.gene75792:intron
ACTTTCCAGGTAGGCTTCAT+GGG 0.496124 5.3:-80343031 MS.gene75792:intron
GGCTAATACCAAAACTCATC+CGG 0.498226 5.3:-80345758 MS.gene75792:CDS
CTCGTACTTCCTCAGCAGGC+TGG 0.501222 5.3:+80342852 None:intergenic
ACACGCTTCTTGACCAGCAC+TGG 0.503067 5.3:+80344389 None:intergenic
TGTGTCTTTCTCTTCACGCA+TGG 0.504664 5.3:-80343380 MS.gene75792:CDS
AAGGCAATAAGGTAGAAAAC+AGG 0.505309 5.3:-80342883 MS.gene75792:CDS
GAGCCTAATGAGTTGAGGTC+AGG 0.509212 5.3:-80343007 MS.gene75792:CDS
AAAGAGAAGGCAAACGGAGA+TGG 0.510159 5.3:+80346284 None:intergenic
CGCGACCCTCGTAGCATTTG+GGG 0.512807 5.3:+80344417 None:intergenic
GTAAAGCAGCTACCAAATAT+GGG 0.514532 5.3:-80344488 MS.gene75792:CDS
TTGATTACCGGAATGTGAAA+TGG 0.514677 5.3:+80346063 None:intergenic
AGAATACTTGCACTTCAGCT+TGG 0.514937 5.3:+80342732 None:intergenic
CAGACTTTCTCTGTTGTAGG+AGG 0.524955 5.3:-80343158 MS.gene75792:intron
CATATACAGTGCGTGTTCCA+AGG 0.527953 5.3:-80344448 MS.gene75792:CDS
CCTGAGAAAGTAAGAAGACA+TGG 0.528230 5.3:-80343592 MS.gene75792:CDS
CACTCTCGTACTTCCTCAGC+AGG 0.530274 5.3:+80342848 None:intergenic
AAGGGATGTTATAAACCAAT+CGG 0.532490 5.3:+80344529 None:intergenic
ATTGGTTTATAACATCCCTT+CGG 0.534376 5.3:-80344526 MS.gene75792:CDS
GAAAAGGAAAGAAAAGAACT+TGG 0.534475 5.3:-80343743 MS.gene75792:CDS
GCATAAGACCAACTTCCTCT+GGG 0.536685 5.3:+80343554 None:intergenic
GAAAAGAAAGAGAAGGCAAA+CGG 0.539093 5.3:+80346278 None:intergenic
CCTCAAAATCAAACGCATGA+AGG 0.539206 5.3:-80342902 MS.gene75792:CDS
CAACTCTTATGTCATTCCGA+AGG 0.542501 5.3:+80344510 None:intergenic
AACATGGCTAAAATTCTAGC+TGG 0.543477 5.3:-80343298 MS.gene75792:CDS
GTTGACACCGGCATTACTAC+AGG 0.543830 5.3:+80345897 None:intergenic
GCAGATAATTGATGCTGTTG+TGG 0.547639 5.3:-80344781 MS.gene75792:intron
AATTGAAACGCATTTGTATG+TGG 0.548016 5.3:-80343512 MS.gene75792:CDS
AAACGGAGATGGCGGAAATG+AGG 0.548034 5.3:+80346295 None:intergenic
TGGCGGAAATGAGGAGGCGA+TGG 0.552680 5.3:+80346304 None:intergenic
GCGATTAACAAGTATCGATC+CGG 0.554337 5.3:+80345739 None:intergenic
AGAAAGCAGGTTCAGCTCAA+AGG 0.555946 5.3:-80342794 MS.gene75792:CDS
AACAAACAACAATGGGAACA+TGG 0.556243 5.3:-80343314 MS.gene75792:CDS
AACTCTTATGTCATTCCGAA+GGG 0.557571 5.3:+80344511 None:intergenic
GAGAGCTCTGAGGGGTGCTA+GGG 0.558049 5.3:+80343459 None:intergenic
AAATGGGGCCAATTCCTCCT+TGG 0.558531 5.3:+80343402 None:intergenic
AATCCGTAAATTTGAGAGCA+TGG 0.564183 5.3:+80344104 None:intergenic
TGGGAAATTTGTTGGTTGAG+CGG 0.564822 5.3:-80344069 MS.gene75792:CDS
TTGTTAATCGCAACCAGTGG+AGG 0.567512 5.3:-80345727 MS.gene75792:CDS
TTGGTCAGTACCCATTAGAA+GGG 0.570383 5.3:+80342751 None:intergenic
GGCGAAGGAAACTGGCAAGA+AGG 0.588540 5.3:+80346337 None:intergenic
TCTTGCATATGTCAAAACTC+AGG 0.590986 5.3:-80342956 MS.gene75792:CDS
GATGGATGAGACGACGGCGA+AGG 0.593369 5.3:+80346322 None:intergenic
GAGAAGGCAAACGGAGATGG+CGG 0.595462 5.3:+80346287 None:intergenic
CCACTTACCCCAGAGGAAGT+TGG 0.600004 5.3:-80343562 MS.gene75792:CDS
GCATGATGAAAAGAAAGAGA+AGG 0.602057 5.3:+80346271 None:intergenic
GCTTAAATCAACAGAGAACA+GGG 0.602960 5.3:-80345705 MS.gene75792:CDS
AAGAGCATTTACAATAAAAG+GGG 0.610292 5.3:+80346230 None:intergenic
AATGAGTTGAGGTCAGGCAG+TGG 0.610497 5.3:-80343001 MS.gene75792:CDS
CTTGCATATGTCAAAACTCA+GGG 0.615011 5.3:-80342955 MS.gene75792:CDS
CGGAGATGGCGGAAATGAGG+AGG 0.616366 5.3:+80346298 None:intergenic
GCATTTACAATAAAAGGGGA+AGG 0.618091 5.3:+80346234 None:intergenic
AAAGGAGACCTTAGCTACCA+AGG 0.620774 5.3:-80343419 MS.gene75792:CDS
GACAAGTCCAGAAGACTCAT+CGG 0.622144 5.3:-80346363 MS.gene75792:CDS
AACTTGGTGAAATTAGGAAG+CGG 0.626657 5.3:-80343727 MS.gene75792:CDS
TGGAGAAATATATGGAGGCG+AGG 0.630114 5.3:-80343485 MS.gene75792:CDS
ATGTCAAAACTCAGGGTCGG+AGG 0.632035 5.3:-80342948 MS.gene75792:CDS
TACTTGTTAATCGCAACCAG+TGG 0.633957 5.3:-80345730 MS.gene75792:CDS
TTTACTTGCAAAGTTGACAC+CGG 0.634644 5.3:+80345885 None:intergenic
GACAGAAAACCAGCCTGCTG+AGG 0.636575 5.3:-80342861 MS.gene75792:CDS
GTCTGAATATCAGTATGTGT+AGG 0.637256 5.3:+80343176 None:intergenic
TGGGAGAGCCTAATGAGTTG+AGG 0.637626 5.3:-80343012 MS.gene75792:CDS
TGGTCAGTACCCATTAGAAG+GGG 0.642645 5.3:+80342752 None:intergenic
TTGGTGAAATTAGGAAGCGG+TGG 0.644603 5.3:-80343724 MS.gene75792:CDS
AGAAAGTAAGAAGACATGGA+AGG 0.646390 5.3:-80343588 MS.gene75792:CDS
CATATGTCAAAACTCAGGGT+CGG 0.649933 5.3:-80342951 MS.gene75792:CDS
CTGCTGAGGAAGTACGAGAG+TGG 0.653675 5.3:-80342847 MS.gene75792:CDS
TCTACAAAAGCTGAGGTGCA+GGG 0.657185 5.3:-80344134 MS.gene75792:CDS
GGAGGCGATGGATGAGACGA+CGG 0.693598 5.3:+80346316 None:intergenic
GCTTCTGGAGAAATATATGG+AGG 0.698383 5.3:-80343490 MS.gene75792:CDS
GCGACCCTCGTAGCATTTGG+GGG 0.700748 5.3:+80344418 None:intergenic
AGTTGGGAAAGAGAGCTCTG+AGG 0.701986 5.3:+80343449 None:intergenic
TGAAGAGAAAGACACAAATG+GGG 0.704290 5.3:+80343387 None:intergenic
GGTCAGTACCCATTAGAAGG+GGG 0.707285 5.3:+80342753 None:intergenic
ATGATGATCTACAAAAGCTG+AGG 0.712332 5.3:-80344141 MS.gene75792:CDS
CATAAGACCAACTTCCTCTG+GGG 0.724014 5.3:+80343555 None:intergenic
CTTAAATCAACAGAGAACAG+GGG 0.728232 5.3:-80345704 MS.gene75792:intron
AAGGTGTCCACTTACCCCAG+AGG 0.746305 5.3:-80343569 MS.gene75792:CDS
TTGGGAAAGAGAGCTCTGAG+GGG 0.774845 5.3:+80343451 None:intergenic
GGAGACCTTAGCTACCAAGG+AGG 0.785211 5.3:-80343416 MS.gene75792:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAGTTATAATAATCAAA+TGG + chr5.3:80345141-80345160 None:intergenic 10.0%
!! TATATTATAAATGAAATAGA+AGG + chr5.3:80342950-80342969 None:intergenic 10.0%
!!! AAAATGTAAATTATTGTTTT+AGG + chr5.3:80345217-80345236 None:intergenic 10.0%
!! AAAAATTATAGATTGTTTGT+GGG - chr5.3:80344176-80344195 MS.gene75792:CDS 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr5.3:80343763-80343782 MS.gene75792:CDS 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr5.3:80343764-80343783 None:intergenic 15.0%
!! AATCAAAAGCAATTAAATAT+AGG + chr5.3:80343323-80343342 None:intergenic 15.0%
!! CAAATATTACATACAAATTA+AGG + chr5.3:80344545-80344564 None:intergenic 15.0%
!! TTAAATGTTATACAATCATA+TGG + chr5.3:80344915-80344934 None:intergenic 15.0%
!!! ATCACATATAATATTTTCTT+TGG - chr5.3:80344493-80344512 MS.gene75792:CDS 15.0%
!!! ATGAAAATAATTTTGATGAA+AGG + chr5.3:80344801-80344820 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr5.3:80343890-80343909 MS.gene75792:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr5.3:80343787-80343806 MS.gene75792:CDS 15.0%
!! AAAAAATACAGATTGTTTGT+GGG - chr5.3:80344330-80344349 MS.gene75792:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr5.3:80343773-80343792 None:intergenic 20.0%
!! AAAGAAAATGAAATTGAAGT+TGG + chr5.3:80345264-80345283 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr5.3:80343730-80343749 MS.gene75792:CDS 20.0%
!! ACAAAATGCATAAAAAAAGA+AGG + chr5.3:80343110-80343129 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr5.3:80343850-80343869 MS.gene75792:intron 20.0%
!! GAAAAATTATAGATTGTTTG+TGG - chr5.3:80344175-80344194 MS.gene75792:CDS 20.0%
!! TTATTCTTGTTCATGAATAA+GGG + chr5.3:80346051-80346070 None:intergenic 20.0%
!!! TTGTTTTTTCTGTTTCATAT+AGG - chr5.3:80345321-80345340 MS.gene75792:intron 20.0%
!!! TTTTTGTAACAAACAACAAT+GGG - chr5.3:80345814-80345833 MS.gene75792:intron 20.0%
! AACATTTAATTGCATTACAC+AGG - chr5.3:80344926-80344945 MS.gene75792:intron 25.0%
! AAGGAGGATAACTTATTAAT+CGG - chr5.3:80343550-80343569 MS.gene75792:CDS 25.0%
! AATCTCTACCCAATAATTAT+AGG - chr5.3:80343995-80344014 MS.gene75792:intron 25.0%
! ACAATTATCACATTGAACTT+CGG + chr5.3:80345288-80345307 None:intergenic 25.0%
! ACAATTCATGAGATGAAAAA+AGG + chr5.3:80343296-80343315 None:intergenic 25.0%
! CTTAATTTATTCCAAGTAGT+TGG - chr5.3:80345914-80345933 MS.gene75792:CDS 25.0%
! GAAAAAATACAGATTGTTTG+TGG - chr5.3:80344329-80344348 MS.gene75792:intron 25.0%
! GAATGATATATTACGTTATG+TGG - chr5.3:80344130-80344149 MS.gene75792:CDS 25.0%
! GTCTGAATTAGATTATGATT+TGG - chr5.3:80346310-80346329 MS.gene75792:CDS 25.0%
! GTTATTCTTGTTCATGAATA+AGG + chr5.3:80346052-80346071 None:intergenic 25.0%
! TATAACTAAATATTTGTCCC+TGG - chr5.3:80345150-80345169 MS.gene75792:intron 25.0%
! TATTCTTGTTCATGAATAAG+GGG + chr5.3:80346050-80346069 None:intergenic 25.0%
! TGTAACTTTGATTGTATTTC+AGG - chr5.3:80343002-80343021 MS.gene75792:CDS 25.0%
! TGTATTTCAGGAAAATGATT+TGG - chr5.3:80343014-80343033 MS.gene75792:CDS 25.0%
!! GTTTTTGTAACAAACAACAA+TGG - chr5.3:80345813-80345832 MS.gene75792:intron 25.0%
!! TGGTCATTTACAAAAAGTAT+AGG - chr5.3:80343968-80343987 MS.gene75792:intron 25.0%
!!! AAGAGCATTTACAATAAAAG+GGG + chr5.3:80342908-80342927 None:intergenic 25.0%
!!! ATACTTTTTGTAAATGACCA+CGG + chr5.3:80343968-80343987 None:intergenic 25.0%
!!! GAAGAGCATTTACAATAAAA+GGG + chr5.3:80342909-80342928 None:intergenic 25.0%
!!! TCCTAATTGTGTTTTTTTAG+CGG + chr5.3:80344068-80344087 None:intergenic 25.0%
!!! TGAAGAGCATTTACAATAAA+AGG + chr5.3:80342910-80342929 None:intergenic 25.0%
!!! TTTTGTTTCTTGGAATTTGA+AGG - chr5.3:80343155-80343174 MS.gene75792:intron 25.0%
AAAGATGTATGATCCAATTC+TGG + chr5.3:80344412-80344431 None:intergenic 30.0%
AAATTTACGGATTCGATTCA+GGG - chr5.3:80345041-80345060 MS.gene75792:intron 30.0%
AAGAGTAGCATTCAAAAGAT+AGG + chr5.3:80344383-80344402 None:intergenic 30.0%
AAGGGATGTTATAAACCAAT+CGG + chr5.3:80344609-80344628 None:intergenic 30.0%
AATTGAAACGCATTTGTATG+TGG - chr5.3:80345623-80345642 MS.gene75792:intron 30.0%
AATTGGATCATACATCTTTC+TGG - chr5.3:80344413-80344432 MS.gene75792:CDS 30.0%
ACAAATTTCTCTCCCATATT+TGG + chr5.3:80344662-80344681 None:intergenic 30.0%
ATTATAGGTCTGCAACAAAT+TGG - chr5.3:80344010-80344029 MS.gene75792:intron 30.0%
ATTTCACTTCTATCATATCC+AGG - chr5.3:80344459-80344478 MS.gene75792:CDS 30.0%
CATAAAAAAAGAAGGTGAGA+AGG + chr5.3:80343102-80343121 None:intergenic 30.0%
CTAGATCAAATTTGATGAAG+TGG - chr5.3:80344287-80344306 MS.gene75792:intron 30.0%
GAAAAGGAAAGAAAAGAACT+TGG - chr5.3:80345392-80345411 MS.gene75792:intron 30.0%
GATTAATAAGTTATCCTCCT+TGG + chr5.3:80343551-80343570 None:intergenic 30.0%
GGTGGAAAAATTTACATGTA+AGG - chr5.3:80345429-80345448 MS.gene75792:intron 30.0%
GTTGCAGACCTATAATTATT+GGG + chr5.3:80344006-80344025 None:intergenic 30.0%
TCCGCTAAAAAAACACAATT+AGG - chr5.3:80344064-80344083 MS.gene75792:CDS 30.0%
TCGGCTAAAATAACTCAATT+AGG - chr5.3:80344259-80344278 MS.gene75792:intron 30.0%
TGAACAAGAATAACATGACA+TGG - chr5.3:80346058-80346077 MS.gene75792:intron 30.0%
TGATAATTAATGTGACTGAC+AGG - chr5.3:80345512-80345531 MS.gene75792:intron 30.0%
TGCTACAATAACTAGTATGT+TGG + chr5.3:80344879-80344898 None:intergenic 30.0%
TGTTGCAGACCTATAATTAT+TGG + chr5.3:80344007-80344026 None:intergenic 30.0%
TGTTTCATATAGGTTTGAAC+CGG - chr5.3:80345331-80345350 MS.gene75792:intron 30.0%
TTTGGACAATTATAGAAAGC+AGG - chr5.3:80346328-80346347 MS.gene75792:CDS 30.0%
! AGAAGGTAAGCTAGTTTATT+AGG - chr5.3:80345861-80345880 MS.gene75792:intron 30.0%
! ATTGGTTTATAACATCCCTT+CGG - chr5.3:80344609-80344628 MS.gene75792:intron 30.0%
! GAAAAGAACTTGGTGAAATT+AGG - chr5.3:80345402-80345421 MS.gene75792:intron 30.0%
! GAAGGTAAGCTAGTTTATTA+GGG - chr5.3:80345862-80345881 MS.gene75792:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr5.3:80343681-80343700 None:intergenic 30.0%
!! AGGGAGTATTATATATAGAG+TGG - chr5.3:80343939-80343958 MS.gene75792:intron 30.0%
!! CATATTTCTAACTTTTGCAG+AGG - chr5.3:80343356-80343375 MS.gene75792:CDS 30.0%
!! TACTCTTGTTATTCCAGAAT+TGG - chr5.3:80344396-80344415 MS.gene75792:CDS 30.0%
!! TCGATCTTCTTTTTGTTTCT+TGG - chr5.3:80343145-80343164 MS.gene75792:intron 30.0%
!!! ATTGAGTTATTTTAGCCGAA+TGG + chr5.3:80344258-80344277 None:intergenic 30.0%
!!! ATTGTGTTTTTTTAGCGGAA+TGG + chr5.3:80344063-80344082 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr5.3:80343682-80343701 MS.gene75792:intron 30.0%
!!! TTGTGTTTTTTTAGCGGAAT+GGG + chr5.3:80344062-80344081 None:intergenic 30.0%
AACAAACAACAATGGGAACA+TGG - chr5.3:80345821-80345840 MS.gene75792:intron 35.0%
AACAGAAAAAACAAGCAGTC+TGG + chr5.3:80345315-80345334 None:intergenic 35.0%
AACATGGCTAAAATTCTAGC+TGG - chr5.3:80345837-80345856 MS.gene75792:intron 35.0%
AACTCTTATGTCATTCCGAA+GGG + chr5.3:80344627-80344646 None:intergenic 35.0%
AAGGCAATAAGGTAGAAAAC+AGG - chr5.3:80346252-80346271 MS.gene75792:CDS 35.0%
AATCCGTAAATTTGAGAGCA+TGG + chr5.3:80345034-80345053 None:intergenic 35.0%
AGAAAGTAAGAAGACATGGA+AGG - chr5.3:80345547-80345566 MS.gene75792:intron 35.0%
AGCGTGTAAGTGTCTAATTA+AGG - chr5.3:80344762-80344781 MS.gene75792:CDS 35.0%
ATGATGATCTACAAAAGCTG+AGG - chr5.3:80344994-80345013 MS.gene75792:intron 35.0%
ATGTGATTTAAGAGACATCC+TGG + chr5.3:80344480-80344499 None:intergenic 35.0%
ATTCAGACTTTCTCTGTTGT+AGG - chr5.3:80345974-80345993 MS.gene75792:intron 35.0%
ATTGCATTACACAGGTTGTT+CGG - chr5.3:80344934-80344953 MS.gene75792:intron 35.0%
CAAATTGATACGAAAGCTCT+AGG - chr5.3:80345238-80345257 MS.gene75792:intron 35.0%
CAAATTTACGGATTCGATTC+AGG - chr5.3:80345040-80345059 MS.gene75792:intron 35.0%
CATGAGATGAAAAAAGGACT+GGG + chr5.3:80343290-80343309 None:intergenic 35.0%
CCAAATAGAAACCAACTACT+TGG + chr5.3:80345928-80345947 None:intergenic 35.0%
CTACCATGCTCTCAAATTTA+CGG - chr5.3:80345028-80345047 MS.gene75792:intron 35.0%
CTCAATTATTTGATGCCGAT+TGG - chr5.3:80344591-80344610 MS.gene75792:intron 35.0%
CTTAAATCAACAGAGAACAG+GGG - chr5.3:80343431-80343450 MS.gene75792:CDS 35.0%
CTTGCATATGTCAAAACTCA+GGG - chr5.3:80346180-80346199 MS.gene75792:intron 35.0%
GAAAAGAAAGAGAAGGCAAA+CGG + chr5.3:80342860-80342879 None:intergenic 35.0%
GCATGATGAAAAGAAAGAGA+AGG + chr5.3:80342867-80342886 None:intergenic 35.0%
GCATTTACAATAAAAGGGGA+AGG + chr5.3:80342904-80342923 None:intergenic 35.0%
GCTTAAATCAACAGAGAACA+GGG - chr5.3:80343430-80343449 MS.gene75792:CDS 35.0%
GGATACCTAACTTACAATGT+TGG + chr5.3:80344858-80344877 None:intergenic 35.0%
GTAAAGCAGCTACCAAATAT+GGG - chr5.3:80344647-80344666 MS.gene75792:intron 35.0%
GTCTAATTAAGGTCCCTAAT+CGG - chr5.3:80344773-80344792 MS.gene75792:CDS 35.0%
GTCTGAATATCAGTATGTGT+AGG + chr5.3:80345962-80345981 None:intergenic 35.0%
GTGAAGAGAAAGACACAAAT+GGG + chr5.3:80345752-80345771 None:intergenic 35.0%
TAGAAGGTAGTTGAAGTAGA+AGG + chr5.3:80342934-80342953 None:intergenic 35.0%
TCATGAGATGAAAAAAGGAC+TGG + chr5.3:80343291-80343310 None:intergenic 35.0%
TCTTGCATATGTCAAAACTC+AGG - chr5.3:80346179-80346198 MS.gene75792:intron 35.0%
TGAAGAGAAAGACACAAATG+GGG + chr5.3:80345751-80345770 None:intergenic 35.0%
TGAAGTGGATGCAATATTTC+TGG - chr5.3:80344302-80344321 MS.gene75792:intron 35.0%
TGAGAAGGTTGTTTGATTAC+CGG + chr5.3:80343087-80343106 None:intergenic 35.0%
TGGTTCCAACATTGTAAGTT+AGG - chr5.3:80344850-80344869 MS.gene75792:intron 35.0%
TGTAAAGCAGCTACCAAATA+TGG - chr5.3:80344646-80344665 MS.gene75792:intron 35.0%
TGTGGATGATGCAATATTTC+TGG - chr5.3:80344148-80344167 MS.gene75792:CDS 35.0%
TTCTTTCTCTTCACTGATGA+TGG + chr5.3:80342736-80342755 None:intergenic 35.0%
TTGATGAAAGGTTCCGATTA+GGG + chr5.3:80344789-80344808 None:intergenic 35.0%
TTGATTACCGGAATGTGAAA+TGG + chr5.3:80343075-80343094 None:intergenic 35.0%
TTTACTTGCAAAGTTGACAC+CGG + chr5.3:80343253-80343272 None:intergenic 35.0%
TTTGATGAAAGGTTCCGATT+AGG + chr5.3:80344790-80344809 None:intergenic 35.0%
TTTGTGGGTGCAAGAATTAT+AGG - chr5.3:80344191-80344210 MS.gene75792:intron 35.0%
! AACTTGGTGAAATTAGGAAG+CGG - chr5.3:80345408-80345427 MS.gene75792:intron 35.0%
! CCAAGTAGTTGGTTTCTATT+TGG - chr5.3:80345925-80345944 MS.gene75792:CDS 35.0%
! CTAAAATTCTAGCTGGAAGA+AGG - chr5.3:80345844-80345863 MS.gene75792:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr5.3:80343812-80343831 MS.gene75792:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr5.3:80343816-80343835 MS.gene75792:intron 35.0%
! TTTTGACATATGCAAGACGT+TGG + chr5.3:80346176-80346195 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr5.3:80343880-80343899 MS.gene75792:intron 35.0%
!! ATGCGTTTGATTTTGAGGAT+TGG + chr5.3:80346231-80346250 None:intergenic 35.0%
!! CAGATTTTGTATGTGCCATT+CGG - chr5.3:80344240-80344259 MS.gene75792:intron 35.0%
!!! GGTTCAACTTTTTTCCGTTA+GGG + chr5.3:80346029-80346048 None:intergenic 35.0%
AGAATACTTGCACTTCAGCT+TGG + chr5.3:80346406-80346425 None:intergenic 40.0%
AGGCAAATGAAGCTACTTAC+AGG - chr5.3:80343175-80343194 MS.gene75792:CDS 40.0%
CAACTCTTATGTCATTCCGA+AGG + chr5.3:80344628-80344647 None:intergenic 40.0%
CATATGTCAAAACTCAGGGT+CGG - chr5.3:80346184-80346203 MS.gene75792:intron 40.0%
CCATGTCTTCTTACTTTCTC+AGG + chr5.3:80345546-80345565 None:intergenic 40.0%
CCTCAAAATCAAACGCATGA+AGG - chr5.3:80346233-80346252 MS.gene75792:intron 40.0%
CCTGAGAAAGTAAGAAGACA+TGG - chr5.3:80345543-80345562 MS.gene75792:intron 40.0%
CGTGAAGAGAAAGACACAAA+TGG + chr5.3:80345753-80345772 None:intergenic 40.0%
CTACAGACTTTCTAATCTGC+TGG - chr5.3:80344971-80344990 MS.gene75792:intron 40.0%
CTACTTACAGGCATGATCTA+TGG - chr5.3:80343187-80343206 MS.gene75792:intron 40.0%
CTTTCCCAACTTCCATTCAA+AGG - chr5.3:80345698-80345717 MS.gene75792:intron 40.0%
GATCGAATTTGACGAATGAG+TGG - chr5.3:80344095-80344114 MS.gene75792:CDS 40.0%
GCAGATAATTGATGCTGTTG+TGG - chr5.3:80344354-80344373 MS.gene75792:intron 40.0%
GCTGAAGAATGGCATATCAA+AGG + chr5.3:80345178-80345197 None:intergenic 40.0%
GGCTAATACCAAAACTCATC+CGG - chr5.3:80343377-80343396 MS.gene75792:CDS 40.0%
GGCTTAAATCAACAGAGAAC+AGG - chr5.3:80343429-80343448 MS.gene75792:CDS 40.0%
GTCTCCTTTGAATGGAAGTT+GGG + chr5.3:80345705-80345724 None:intergenic 40.0%
GTTTCATCGCGCTACATTTA+AGG - chr5.3:80345108-80345127 MS.gene75792:intron 40.0%
TAGCTAAGGTCTCCTTTGAA+TGG + chr5.3:80345713-80345732 None:intergenic 40.0%
TCAAACGCATGAAGGCAATA+AGG - chr5.3:80346241-80346260 MS.gene75792:intron 40.0%
TCAGGGAATGGGAAATTTGT+TGG - chr5.3:80345058-80345077 MS.gene75792:intron 40.0%
TGAATGTATAGAGCAGTCCA+AGG - chr5.3:80343531-80343550 MS.gene75792:CDS 40.0%
TTGGTCAGTACCCATTAGAA+GGG + chr5.3:80346387-80346406 None:intergenic 40.0%
! CATCTTTCTGGAAAGACAAC+AGG - chr5.3:80344425-80344444 MS.gene75792:CDS 40.0%
! GCATTCTCTGGTTGCTATTA+TGG - chr5.3:80345362-80345381 MS.gene75792:intron 40.0%
! GCTTCTGGAGAAATATATGG+AGG - chr5.3:80345645-80345664 MS.gene75792:intron 40.0%
! GTGGCTTCTGGAGAAATATA+TGG - chr5.3:80345642-80345661 MS.gene75792:intron 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr5.3:80343815-80343834 MS.gene75792:intron 40.0%
! TACTTGTTAATCGCAACCAG+TGG - chr5.3:80343405-80343424 MS.gene75792:CDS 40.0%
! TCTCTGGTTGCTATTATGGT+GGG - chr5.3:80345366-80345385 MS.gene75792:intron 40.0%
! TTCTCTGGTTGCTATTATGG+TGG - chr5.3:80345365-80345384 MS.gene75792:intron 40.0%
!! CCTTCATGCGTTTGATTTTG+AGG + chr5.3:80346236-80346255 None:intergenic 40.0%
!! GCGATTAACAAGTATCGATC+CGG + chr5.3:80343399-80343418 None:intergenic 40.0%
!! TGGGAAATTTGTTGGTTGAG+CGG - chr5.3:80345066-80345085 MS.gene75792:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr5.3:80343920-80343939 MS.gene75792:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr5.3:80343939-80343920 None:intergenic 40.0%
!!! GGGTTCAACTTTTTTCCGTT+AGG + chr5.3:80346030-80346049 None:intergenic 40.0%
!!! TCAACTTTTTTCCGTTAGGG+CGG + chr5.3:80346026-80346045 None:intergenic 40.0%
AAAGAGAAGGCAAACGGAGA+TGG + chr5.3:80342854-80342873 None:intergenic 45.0%
AAAGGAGACCTTAGCTACCA+AGG - chr5.3:80345716-80345735 MS.gene75792:CDS 45.0%
AACTTTCCAGGTAGGCTTCA+TGG - chr5.3:80346103-80346122 MS.gene75792:CDS 45.0%
ACGCATTTGTATGTGGCTTC+TGG - chr5.3:80345630-80345649 MS.gene75792:intron 45.0%
ACGGATTCGATTCAGGGAAT+GGG - chr5.3:80345047-80345066 MS.gene75792:intron 45.0%
ACTTTCCAGGTAGGCTTCAT+GGG - chr5.3:80346104-80346123 MS.gene75792:CDS 45.0%
AGAAAGCAGGTTCAGCTCAA+AGG - chr5.3:80346341-80346360 MS.gene75792:CDS 45.0%
AGCATAAGACCAACTTCCTC+TGG + chr5.3:80345585-80345604 None:intergenic 45.0%
ATCTACAAAAGCTGAGGTGC+AGG - chr5.3:80345000-80345019 MS.gene75792:intron 45.0%
ATCTCGAGTTCGAACTTTCC+AGG - chr5.3:80346091-80346110 MS.gene75792:CDS 45.0%
ATGTATAGAGCAGTCCAAGG+AGG - chr5.3:80343534-80343553 MS.gene75792:CDS 45.0%
CAGACTTTCTCTGTTGTAGG+AGG - chr5.3:80345977-80345996 MS.gene75792:intron 45.0%
CATAAGACCAACTTCCTCTG+GGG + chr5.3:80345583-80345602 None:intergenic 45.0%
CATATACAGTGCGTGTTCCA+AGG - chr5.3:80344687-80344706 MS.gene75792:intron 45.0%
CCAGAGAATGCAAGCATATC+CGG + chr5.3:80345353-80345372 None:intergenic 45.0%
CTTAGCTACCAAGGAGGAAT+TGG - chr5.3:80345725-80345744 MS.gene75792:CDS 45.0%
CTTGGAACACGCACTGTATA+TGG + chr5.3:80344689-80344708 None:intergenic 45.0%
CTTGGTCAGTACCCATTAGA+AGG + chr5.3:80346388-80346407 None:intergenic 45.0%
GAAAAAAGGACTGGGAGTCT+AGG + chr5.3:80343282-80343301 None:intergenic 45.0%
GACAAGTCCAGAAGACTCAT+CGG - chr5.3:80342772-80342791 MS.gene75792:CDS 45.0%
GCAATCGCCATTTCACATTC+CGG - chr5.3:80343065-80343084 MS.gene75792:intron 45.0%
GCATAAGACCAACTTCCTCT+GGG + chr5.3:80345584-80345603 None:intergenic 45.0%
GCTGATCACATGCTGAAGAA+TGG + chr5.3:80345189-80345208 None:intergenic 45.0%
GGTCTCCTTTGAATGGAAGT+TGG + chr5.3:80345706-80345725 None:intergenic 45.0%
TACGGATTCGATTCAGGGAA+TGG - chr5.3:80345046-80345065 MS.gene75792:intron 45.0%
TATATATAGAGTGGCGACCG+TGG - chr5.3:80343948-80343967 MS.gene75792:intron 45.0%
TCTACAAAAGCTGAGGTGCA+GGG - chr5.3:80345001-80345020 MS.gene75792:intron 45.0%
TGGAGAAATATATGGAGGCG+AGG - chr5.3:80345650-80345669 MS.gene75792:intron 45.0%
TGGTCAGTACCCATTAGAAG+GGG + chr5.3:80346386-80346405 None:intergenic 45.0%
TGTGTCTTTCTCTTCACGCA+TGG - chr5.3:80345755-80345774 MS.gene75792:CDS 45.0%
TTCTCTGCCTGTAGTAATGC+CGG - chr5.3:80343231-80343250 MS.gene75792:intron 45.0%
TTGGTGAAATTAGGAAGCGG+TGG - chr5.3:80345411-80345430 MS.gene75792:intron 45.0%
TTGTTAATCGCAACCAGTGG+AGG - chr5.3:80343408-80343427 MS.gene75792:CDS 45.0%
! CAATTCCTCCTTGGTAGCTA+AGG + chr5.3:80345727-80345746 None:intergenic 45.0%
! CTATTATGGTGGGGGAGAAA+AGG - chr5.3:80345376-80345395 MS.gene75792:intron 45.0%
! CTCTGGTTGCTATTATGGTG+GGG - chr5.3:80345367-80345386 MS.gene75792:intron 45.0%
! GGTCTTATGCTTAGAGCACT+AGG - chr5.3:80345594-80345613 MS.gene75792:intron 45.0%
! TCTGGTTGCTATTATGGTGG+GGG - chr5.3:80345368-80345387 MS.gene75792:intron 45.0%
!! AATGGCATATCAAAGGCACC+AGG + chr5.3:80345171-80345190 None:intergenic 45.0%
!! ATGGCATATCAAAGGCACCA+GGG + chr5.3:80345170-80345189 None:intergenic 45.0%
!! CTCTGTTGTAGGAGGTACTT+TGG - chr5.3:80345985-80346004 MS.gene75792:intron 45.0%
!! CTGTTGATTTAAGCCTCCAC+TGG + chr5.3:80343424-80343443 None:intergenic 45.0%
!! GTATCGATCCGGATGAGTTT+TGG + chr5.3:80343388-80343407 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr5.3:80343919-80343938 MS.gene75792:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr5.3:80343938-80343919 None:intergenic 45.0%
!!! AATTTTATTAATAAAAATTG+TGG - chr5.3:80344830-80344849 MS.gene75792:intron 5.0%
!!! AATTTTTATTAATAAAATTG+AGG + chr5.3:80344829-80344848 None:intergenic 5.0%
!!! ATTTTTATTAATAAAATTGA+GGG + chr5.3:80344828-80344847 None:intergenic 5.0%
AAACCTACCATCCGCCCTAA+CGG - chr5.3:80346012-80346031 MS.gene75792:intron 50.0%
AAATGGGGCCAATTCCTCCT+TGG + chr5.3:80345736-80345755 None:intergenic 50.0%
AAGGAGTCCGATGAGTCTTC+TGG + chr5.3:80342782-80342801 None:intergenic 50.0%
AGGGTCGGAGGTAAAAACTG+AGG - chr5.3:80346199-80346218 MS.gene75792:intron 50.0%
AGTTGGGAAAGAGAGCTCTG+AGG + chr5.3:80345689-80345708 None:intergenic 50.0%
ATGTCAAAACTCAGGGTCGG+AGG - chr5.3:80346187-80346206 MS.gene75792:intron 50.0%
CCGGATATGCTTGCATTCTC+TGG - chr5.3:80345350-80345369 MS.gene75792:intron 50.0%
CGAGTTCGAACTTTCCAGGT+AGG - chr5.3:80346095-80346114 MS.gene75792:CDS 50.0%
CTGCCTGACCTCAACTCATT+AGG + chr5.3:80346134-80346153 None:intergenic 50.0%
GGGTCGGAGGTAAAAACTGA+GGG - chr5.3:80346200-80346219 MS.gene75792:intron 50.0%
GGTCAGTACCCATTAGAAGG+GGG + chr5.3:80346385-80346404 None:intergenic 50.0%
GTTGACACCGGCATTACTAC+AGG + chr5.3:80343241-80343260 None:intergenic 50.0%
TGGGAGAGCCTAATGAGTTG+AGG - chr5.3:80346123-80346142 MS.gene75792:intron 50.0%
! AATGAGTTGAGGTCAGGCAG+TGG - chr5.3:80346134-80346153 MS.gene75792:intron 50.0%
! CATTTGGGGGTGCATTTCCT+TGG + chr5.3:80344707-80344726 None:intergenic 50.0%
! GAGCCTAATGAGTTGAGGTC+AGG - chr5.3:80346128-80346147 MS.gene75792:intron 50.0%
! GTTGGGAAAGAGAGCTCTGA+GGG + chr5.3:80345688-80345707 None:intergenic 50.0%
!! AAACGGAGATGGCGGAAATG+AGG + chr5.3:80342843-80342862 None:intergenic 50.0%
!! TTGGGAAAGAGAGCTCTGAG+GGG + chr5.3:80345687-80345706 None:intergenic 50.0%
!!! CTTTTTTCCGTTAGGGCGGA+TGG + chr5.3:80346022-80346041 None:intergenic 50.0%
AACGCGACCCTCGTAGCATT+TGG + chr5.3:80344723-80344742 None:intergenic 55.0%
ACACGCTTCTTGACCAGCAC+TGG + chr5.3:80344749-80344768 None:intergenic 55.0%
ACGCGACCCTCGTAGCATTT+GGG + chr5.3:80344722-80344741 None:intergenic 55.0%
ATGCACCCCCAAATGCTACG+AGG - chr5.3:80344712-80344731 MS.gene75792:CDS 55.0%
CACTCTCGTACTTCCTCAGC+AGG + chr5.3:80346290-80346309 None:intergenic 55.0%
CCACTTACCCCAGAGGAAGT+TGG - chr5.3:80345573-80345592 MS.gene75792:intron 55.0%
GACAGAAAACCAGCCTGCTG+AGG - chr5.3:80346274-80346293 MS.gene75792:CDS 55.0%
GAGAAGGCAAACGGAGATGG+CGG + chr5.3:80342851-80342870 None:intergenic 55.0%
GAGTCGCTCCCCCTTCTAAT+GGG - chr5.3:80346374-80346393 MS.gene75792:CDS 55.0%
GGAGACCTTAGCTACCAAGG+AGG - chr5.3:80345719-80345738 MS.gene75792:CDS 55.0%
GGCGAAGGAAACTGGCAAGA+AGG + chr5.3:80342801-80342820 None:intergenic 55.0%
TGAGTCGCTCCCCCTTCTAA+TGG - chr5.3:80346373-80346392 MS.gene75792:CDS 55.0%
TGCACCCCCAAATGCTACGA+GGG - chr5.3:80344713-80344732 MS.gene75792:CDS 55.0%
TTTCCGTTAGGGCGGATGGT+AGG + chr5.3:80346018-80346037 None:intergenic 55.0%
! AAGGTGTCCACTTACCCCAG+AGG - chr5.3:80345566-80345585 MS.gene75792:intron 55.0%
! CTGCTGAGGAAGTACGAGAG+TGG - chr5.3:80346288-80346307 MS.gene75792:CDS 55.0%
!! CCAACTTCCTCTGGGGTAAG+TGG + chr5.3:80345576-80345595 None:intergenic 55.0%
CGCGACCCTCGTAGCATTTG+GGG + chr5.3:80344721-80344740 None:intergenic 60.0%
CTCGTACTTCCTCAGCAGGC+TGG + chr5.3:80346286-80346305 None:intergenic 60.0%
GAGACGACGGCGAAGGAAAC+TGG + chr5.3:80342809-80342828 None:intergenic 60.0%
GATGGATGAGACGACGGCGA+AGG + chr5.3:80342816-80342835 None:intergenic 60.0%
GCGACCCTCGTAGCATTTGG+GGG + chr5.3:80344720-80344739 None:intergenic 60.0%
GCTCTCCCATGAAGCCTACC+TGG + chr5.3:80346112-80346131 None:intergenic 60.0%
GGAGGCGATGGATGAGACGA+CGG + chr5.3:80342822-80342841 None:intergenic 60.0%
TGGCGGAAATGAGGAGGCGA+TGG + chr5.3:80342834-80342853 None:intergenic 60.0%
! GGGTCGCGTTTTACCAGTGC+TGG - chr5.3:80344733-80344752 MS.gene75792:CDS 60.0%
!! AGAGAGCTCTGAGGGGTGCT+AGG + chr5.3:80345680-80345699 None:intergenic 60.0%
!! CGGAGATGGCGGAAATGAGG+AGG + chr5.3:80342840-80342859 None:intergenic 60.0%
!! GAGAGCTCTGAGGGGTGCTA+GGG + chr5.3:80345679-80345698 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 80342721 80346436 80342721 ID=MS.gene75792
chr5.3 mRNA 80342721 80346436 80342721 ID=MS.gene75792.t1;Parent=MS.gene75792
chr5.3 exon 80346242 80346436 80346242 ID=MS.gene75792.t1.exon1;Parent=MS.gene75792.t1
chr5.3 CDS 80346242 80346436 80346242 ID=cds.MS.gene75792.t1;Parent=MS.gene75792.t1
chr5.3 exon 80346071 80346133 80346071 ID=MS.gene75792.t1.exon2;Parent=MS.gene75792.t1
chr5.3 CDS 80346071 80346133 80346071 ID=cds.MS.gene75792.t1;Parent=MS.gene75792.t1
chr5.3 exon 80345890 80345980 80345890 ID=MS.gene75792.t1.exon3;Parent=MS.gene75792.t1
chr5.3 CDS 80345890 80345980 80345890 ID=cds.MS.gene75792.t1;Parent=MS.gene75792.t1
chr5.3 exon 80345705 80345781 80345705 ID=MS.gene75792.t1.exon4;Parent=MS.gene75792.t1
chr5.3 CDS 80345705 80345781 80345705 ID=cds.MS.gene75792.t1;Parent=MS.gene75792.t1
chr5.3 exon 80344711 80344799 80344711 ID=MS.gene75792.t1.exon5;Parent=MS.gene75792.t1
chr5.3 CDS 80344711 80344799 80344711 ID=cds.MS.gene75792.t1;Parent=MS.gene75792.t1
chr5.3 exon 80344391 80344574 80344391 ID=MS.gene75792.t1.exon6;Parent=MS.gene75792.t1
chr5.3 CDS 80344391 80344574 80344391 ID=cds.MS.gene75792.t1;Parent=MS.gene75792.t1
chr5.3 exon 80344028 80344209 80344028 ID=MS.gene75792.t1.exon7;Parent=MS.gene75792.t1
chr5.3 CDS 80344028 80344209 80344028 ID=cds.MS.gene75792.t1;Parent=MS.gene75792.t1
chr5.3 exon 80343712 80343814 80343712 ID=MS.gene75792.t1.exon8;Parent=MS.gene75792.t1
chr5.3 CDS 80343712 80343814 80343712 ID=cds.MS.gene75792.t1;Parent=MS.gene75792.t1
chr5.3 exon 80343292 80343623 80343292 ID=MS.gene75792.t1.exon9;Parent=MS.gene75792.t1
chr5.3 CDS 80343292 80343623 80343292 ID=cds.MS.gene75792.t1;Parent=MS.gene75792.t1
chr5.3 exon 80343159 80343205 80343159 ID=MS.gene75792.t1.exon10;Parent=MS.gene75792.t1
chr5.3 CDS 80343159 80343205 80343159 ID=cds.MS.gene75792.t1;Parent=MS.gene75792.t1
chr5.3 exon 80342721 80343040 80342721 ID=MS.gene75792.t1.exon11;Parent=MS.gene75792.t1
chr5.3 CDS 80342721 80343040 80342721 ID=cds.MS.gene75792.t1;Parent=MS.gene75792.t1
Gene Sequence

>MS.gene75792

ATGATGCATACACCATCATCAGTGAAGAGAAAGAAGAATCACACACACACAGACAAGTCCAGAAGACTCATCGGACTCCTTCTTGCCAGTTTCCTTCGCCGTCGTCTCATCCATCGCCTCCTCATTTCCGCCATCTCCGTTTGCCTTCTCTTTCTTTTCATCATGCTCTCACTCTTCGCTCCTTCCCCTTTTATTGTAAATGCTCTTCATCCTTCTACTTCAACTACCTTCTATTTCATTTATAATATATGCTTTTCGTCATTGCATTGTTCTGTTCTGTGTGTAACTTTGATTGTATTTCAGGAAAATGATTTGGTTAAATCTCGTTTAGATTCTCATCAGCAGCAATCGCCATTTCACATTCCGGTAATCAAACAACCTTCTCACCTTCTTTTTTTATGCATTTTGTGTTATGTTGCTAATATCGATCTTCTTTTTGTTTCTTGGAATTTGAAGGCAAATGAAGCTACTTACAGGCATGATCTATGGAATTCGAGAAACTCACAGCTTTTCTCTGCCTGTAGTAATGCCGGTGTCAACTTTGCAAGTAAACTTCATCCTAGACTCCCAGTCCTTTTTTCATCTCATGAATTGTAATTCCTATATTTAATTGCTTTTGATTGAGCGTATTTATTCATATTTCTAACTTTTGCAGAGGCTAATACCAAAACTCATCCGGATCGATACTTGTTAATCGCAACCAGTGGAGGCTTAAATCAACAGAGAACAGGGGTAATTAAGCTAAGCTTCTTTCTTAATGAACTGTGTCTGTGCTGTTGCTTTGTTTATGCAATCTTTTTAGTCAAGTAATGAATGTATAGAGCAGTCCAAGGAGGATAACTTATTAATCGGAATATGTACTTCTTTCTACATGTAACTAATTGTTTTATTTGAGTATGAATATTTCTTTCATTTGTTCAATTAGTAAACTTAATTGCATTCAAAATACTACTCCCTCCGTTTCAAAATGAGTGTCGTTTTAGGTGTTTACACACATATTAAGAAATGTAATGATTAAAAGAAAGAGAATGGTTATTTTACCAAATTATCCTTATTAACTATTGGTTAGTTTTAAAAGTAATACTTTGGAAGTAGTGTGCAGAGTATTAATTGGAGGGTACAATTGAAAAGAAAAAGTTATTATTGCATTGGAAACTGAAAGCGACACTCATTTTGAAACAAATTTTTTTGGCTAAAGCGACACTCATTTTGAAACGGAGGGAGTATTATATATAGAGTGGCGACCGTGGTCATTTACAAAAAGTATAGGTTGAAATCTCTACCCAATAATTATAGGTCTGCAACAAATTGGTGATTTGCTATACAGATTTTGTGTGTCCCATTCCGCTAAAAAAACACAATTAGGATTTTCTTGATCGAATTTGACGAATGAGTGGTGATACGAATTTGAATGATATATTACGTTATGTGGATGATGCAATATTTCTGGTATTGAAAAATTATAGATTGTTTGTGGGTGCAAGAATTATAGGTCTGCAAAAATTAGTGATTTGATATACAGATTTTGTATGTGCCATTCGGCTAAAATAACTCAATTAGGATTTTCTAGATCAAATTTGATGAAGTGGATGCAATATTTCTGGCATTGAAAAAATACAGATTGTTTGTGGGTGCAGATAATTGATGCTGTTGTGGCTGCCTATCTTTTGAATGCTACTCTTGTTATTCCAGAATTGGATCATACATCTTTCTGGAAAGACAACAGGTCTGTGTTTACATTTCACTTCTATCATATCCAGGATGTCTCTTAAATCACATATAATATTTTCTTTGGTAGCAGAACACATTTGTCATTGTACTCCTTAATTTGTATGTAATATTTGATTATTATTTTTTTGCAGCAATTTTTCTCAATTATTTGATGCCGATTGGTTTATAACATCCCTTCGGAATGACATAAGAGTTGTAAAGCAGCTACCAAATATGGGAGAGAAATTTGTGACTCCATATACAGTGCGTGTTCCAAGGAAATGCACCCCCAAATGCTACGAGGGTCGCGTTTTACCAGTGCTGGTCAAGAAGCGTGTAAGTGTCTAATTAAGGTCCCTAATCGGAACCTTTCATCAAAATTATTTTCATGTATCCCTCAATTTTATTAATAAAAATTGTGGTTCCAACATTGTAAGTTAGGTATCCAACATACTAGTTATTGTAGCAAGTTGTGTTGATGCCATATGATTGTATAACATTTAATTGCATTACACAGGTTGTTCGGCTCACGAAGTTTGACTACAGACTTTCTAATCTGCTGGATGATGATCTACAAAAGCTGAGGTGCAGGGTAAACTACCATGCTCTCAAATTTACGGATTCGATTCAGGGAATGGGAAATTTGTTGGTTGAGCGGATGAGAATGAAAAGCATGCGTTTCATCGCGCTACATTTAAGGTAAGATTCCATTTGATTATTATAACTAAATATTTGTCCCTGGTGCCTTTGATATGCCATTCTTCAGCATGTGATCAGCTAAATCCTAAAACAATAATTTACATTTTTCAAATTGATACGAAAGCTCTAGGCCAACTTCAATTTCATTTTCTTTTCCGAAGTTCAATGTGATAATTGTTGATCCAGACTGCTTGTTTTTTCTGTTTCATATAGGTTTGAACCGGATATGCTTGCATTCTCTGGTTGCTATTATGGTGGGGGAGAAAAGGAAAGAAAAGAACTTGGTGAAATTAGGAAGCGGTGGAAAAATTTACATGTAAGGTTCTATTGACATTCAAGATATCTTTATTAACTGTATGAAAATTTGCATAATCTTACTATTTGATAATTAATGTGACTGACAGGCAAGCAATCCTGAGAAAGTAAGAAGACATGGAAGGTGTCCACTTACCCCAGAGGAAGTTGGTCTTATGCTTAGAGCACTAGGTTTTGAAATTGAAACGCATTTGTATGTGGCTTCTGGAGAAATATATGGAGGCGAGGAAACCCTAGCACCCCTCAGAGCTCTCTTTCCCAACTTCCATTCAAAGGAGACCTTAGCTACCAAGGAGGAATTGGCCCCATTTGTGTCTTTCTCTTCACGCATGGCTGCGCTTGATTACATAGTTTGTGATGACAGCGACGTTTTTGTAACAAACAACAATGGGAACATGGCTAAAATTCTAGCTGGAAGAAGGTAAGCTAGTTTATTAGGGCGTGAAATTCTTCTAGCTAGTCTCATGTGCTTAATTTATTCCAAGTAGTTGGTTTCTATTTGGACAGTACTTTTCCTACACATACTGATATTCAGACTTTCTCTGTTGTAGGAGGTACTTTGGTCATAAACCTACCATCCGCCCTAACGGAAAAAAGTTGAACCCCTTATTCATGAACAAGAATAACATGACATGGCAAGATTTGCATCTCGAGTTCGAACTTTCCAGGTAGGCTTCATGGGAGAGCCTAATGAGTTGAGGTCAGGCAGTGGTGAGTTTCACGAGAATCCAACGTCTTGCATATGTCAAAACTCAGGGTCGGAGGTAAAAACTGAGGGATTTTCCAATCCTCAAAATCAAACGCATGAAGGCAATAAGGTAGAAAACAGGACAGAAAACCAGCCTGCTGAGGAAGTACGAGAGTGGTCTGAATTAGATTATGATTTGGACAATTATAGAAAGCAGGTTCAGCTCAAAGGAACTAATATTGAGTCGCTCCCCCTTCTAATGGGTACTGACCAAGCTGAAGTGCAAGTATTCTTCTCAGATTAG
Protein sequence

>MS.gene75792.t1

MMHTPSSVKRKKNHTHTDKSRRLIGLLLASFLRRRLIHRLLISAISVCLLFLFIMLSLFAPSPFIENDLVKSRLDSHQQQSPFHIPANEATYRHDLWNSRNSQLFSACSNAGVNFAKANTKTHPDRYLLIATSGGLNQQRTGIIDAVVAAYLLNATLVIPELDHTSFWKDNSNFSQLFDADWFITSLRNDIRVVKQLPNMGEKFVTPYTVRVPRKCTPKCYEGRVLPVLVKKRVVRLTKFDYRLSNLLDDDLQKLRCRVNYHALKFTDSIQGMGNLLVERMRMKSMRFIALHLRFEPDMLAFSGCYYGGGEKERKELGEIRKRWKNLHASNPEKVRRHGRCPLTPEEVGLMLRALGFEIETHLYVASGEIYGGEETLAPLRALFPNFHSKETLATKEELAPFVSFSSRMAALDYIVCDDSDVFVTNNNGNMAKILAGRSTFPTHTDIQTFSVVGGFMGEPNELRSGSGEFHENPTSCICQNSGSEVKTEGFSNPQNQTHEGNKVENRTENQPAEEVREWSELDYDLDNYRKQVQLKGTNIESLPLLMGTDQAEVQVFFSD