Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76152.t1 | XP_003597586.1 | 90.9 | 613 | 52 | 4 | 1 | 611 | 1 | 611 | 0.00E+00 | 1086.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76152.t1 | Q2HVD6 | 90.9 | 613 | 52 | 4 | 1 | 611 | 1 | 611 | 0.0e+00 | 1086.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76152.t1 | G7IUG5 | 90.9 | 613 | 52 | 4 | 1 | 611 | 1 | 611 | 0.0e+00 | 1086.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76152 | MS.gene002130 | PPI |
| MS.gene76152 | MS.gene34132 | PPI |
| MS.gene061149 | MS.gene76152 | PPI |
| MS.gene76152 | MS.gene006257 | PPI |
| MS.gene49127 | MS.gene76152 | PPI |
| MS.gene76152 | MS.gene071985 | PPI |
| MS.gene76152 | MS.gene01671 | PPI |
| MS.gene047123 | MS.gene76152 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76152.t1 | MTR_2g099870 | 93.148 | 613 | 38 | 4 | 1 | 611 | 1 | 611 | 0.0 | 1147 |
| MS.gene76152.t1 | MTR_8g104280 | 84.352 | 409 | 44 | 2 | 237 | 625 | 342 | 750 | 0.0 | 729 |
| MS.gene76152.t1 | MTR_8g104280 | 71.642 | 268 | 58 | 5 | 1 | 253 | 1 | 265 | 5.15e-99 | 319 |
| MS.gene76152.t1 | MTR_1g100210 | 36.744 | 215 | 115 | 8 | 385 | 578 | 684 | 898 | 1.20e-33 | 138 |
| MS.gene76152.t1 | MTR_4g025460 | 54.867 | 113 | 36 | 3 | 503 | 615 | 38 | 135 | 1.86e-21 | 92.4 |
| MS.gene76152.t1 | MTR_4g025470 | 56.627 | 83 | 35 | 1 | 114 | 196 | 1520 | 1601 | 7.60e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76152.t1 | AT4G10760 | 74.074 | 378 | 92 | 2 | 229 | 606 | 308 | 679 | 0.0 | 588 |
| MS.gene76152.t1 | AT4G10760 | 49.780 | 227 | 89 | 5 | 1 | 208 | 1 | 221 | 5.88e-53 | 193 |
| MS.gene76152.t1 | AT4G09980 | 35.885 | 209 | 99 | 10 | 385 | 565 | 617 | 818 | 3.09e-29 | 124 |
| MS.gene76152.t1 | AT4G09980 | 35.404 | 161 | 71 | 9 | 385 | 519 | 617 | 770 | 8.33e-18 | 88.2 |
Find 152 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAGCTTGCTGGAGATTC+AGG | 0.173970 | 2.3:-3890583 | MS.gene76152:CDS |
| TGCAACCGATAGTATGAATT+TGG | 0.207772 | 2.3:-3890335 | MS.gene76152:CDS |
| TTCCACTTTATCTAGGAAAT+TGG | 0.217318 | 2.3:-3890647 | MS.gene76152:CDS |
| TAATTAATAAGAAATCATTT+AGG | 0.231898 | 2.3:-3890297 | MS.gene76152:CDS |
| CGCTGCTGCCTTAGTGGTTT+GGG | 0.242037 | 2.3:+3889932 | None:intergenic |
| CTGGCTTTCGGCTTGTTTCC+CGG | 0.250664 | 2.3:+3889468 | None:intergenic |
| CAACTCCACCTTTCTTGTTC+CGG | 0.271026 | 2.3:+3889412 | None:intergenic |
| TGGAGAGATGATTTCGATTT+GGG | 0.273839 | 2.3:+3890826 | None:intergenic |
| TTGGAGAGATGATTTCGATT+TGG | 0.288507 | 2.3:+3890825 | None:intergenic |
| AACTCCACCTTTCTTGTTCC+GGG | 0.291160 | 2.3:+3889413 | None:intergenic |
| AGGACTGAGAGCAAGGTTTA+AGG | 0.294608 | 2.3:-3889312 | MS.gene76152:CDS |
| AGTTGATGTTGTGCAGTTTC+AGG | 0.295711 | 2.3:+3890418 | None:intergenic |
| CGATTTGGGAGGGTTGAAAT+AGG | 0.298630 | 2.3:+3890840 | None:intergenic |
| TGCAGCCAGCATCACCTTCC+AGG | 0.298893 | 2.3:-3889268 | MS.gene76152:CDS |
| ACATTGTCTTGTTGGGATAA+AGG | 0.301011 | 2.3:-3889543 | MS.gene76152:CDS |
| TCTTCATACTGACATTAGTT+TGG | 0.301506 | 2.3:-3890068 | MS.gene76152:CDS |
| TTATTCAGACTCCAAGTATA+AGG | 0.302457 | 2.3:-3890234 | MS.gene76152:CDS |
| AATTAATAAGAAATCATTTA+GGG | 0.304246 | 2.3:-3890296 | MS.gene76152:CDS |
| ATGGACATATTAGGTAAGTT+TGG | 0.307068 | 2.3:-3889839 | MS.gene76152:CDS |
| TCAATGTTTCTGTTTACTTC+AGG | 0.308190 | 2.3:+3889515 | None:intergenic |
| TTGATTCTTCCACTTTATCT+AGG | 0.314013 | 2.3:-3890654 | MS.gene76152:CDS |
| TCGCTGCTGCCTTAGTGGTT+TGG | 0.325097 | 2.3:+3889931 | None:intergenic |
| TCGAGAGAAGAAACAAAATT+AGG | 0.331810 | 2.3:+3890925 | None:intergenic |
| AACTTTAGAATGGACATATT+AGG | 0.337914 | 2.3:-3889848 | MS.gene76152:CDS |
| GGACTAACTTTCTCTGATAC+TGG | 0.341985 | 2.3:+3890739 | None:intergenic |
| ATCATTGTTGGAGGCAAATC+AGG | 0.343274 | 2.3:+3889971 | None:intergenic |
| CTTCATACTGACATTAGTTT+GGG | 0.344638 | 2.3:-3890067 | MS.gene76152:CDS |
| AAGCTTATTACATGCTATAA+AGG | 0.346913 | 2.3:+3890111 | None:intergenic |
| GGAGGGTTGAAATAGGTTAG+AGG | 0.347303 | 2.3:+3890847 | None:intergenic |
| CATTGTCTTGTTGGGATAAA+GGG | 0.350805 | 2.3:-3889542 | MS.gene76152:CDS |
| AGGTAAGTTTGGAGTAATAA+TGG | 0.355596 | 2.3:-3889828 | MS.gene76152:CDS |
| TTTGTTGGTAAGTCACAATA+TGG | 0.356763 | 2.3:+3890160 | None:intergenic |
| ATGTTATTGTTTCTGAAGTC+CGG | 0.366102 | 2.3:-3889487 | MS.gene76152:CDS |
| GCTGGCTGCACCTCCACATC+TGG | 0.374605 | 2.3:+3889281 | None:intergenic |
| ATTCACATGGAGCTGCCTTA+TGG | 0.374787 | 2.3:-3889788 | MS.gene76152:CDS |
| CATACATCTCATCTGGCTTT+CGG | 0.378981 | 2.3:+3889456 | None:intergenic |
| TTTGTCAGTTGTTCGATCAA+TGG | 0.384398 | 2.3:-3890716 | MS.gene76152:CDS |
| TCAGGTCGCTGCTGCCTTAG+TGG | 0.385213 | 2.3:+3889926 | None:intergenic |
| TGCCTTAGTGGTTTGGGAGG+AGG | 0.388533 | 2.3:+3889938 | None:intergenic |
| ACGAGAATGCTTAGAACGTT+GGG | 0.403991 | 2.3:-3889666 | MS.gene76152:CDS |
| GCCGCATTTCAAGAGCTTGC+TGG | 0.406908 | 2.3:-3890592 | MS.gene76152:CDS |
| ACTGGGCGTGCGATGGAACT+TGG | 0.415975 | 2.3:-3889689 | MS.gene76152:CDS |
| CTCCAATTTCCTAGATAAAG+TGG | 0.425057 | 2.3:+3890645 | None:intergenic |
| AGATGAGATGTATGCTTTGT+TGG | 0.426898 | 2.3:-3889447 | MS.gene76152:CDS |
| ACCTTCCAGGGCTTCTGCTA+TGG | 0.432012 | 2.3:-3889255 | MS.gene76152:CDS |
| AAGAGAGAACTTTGAGAGAA+AGG | 0.436417 | 2.3:+3890902 | None:intergenic |
| CTTCAGCGAATAATTAGAAC+TGG | 0.443807 | 2.3:-3889599 | MS.gene76152:CDS |
| GCAAGGAACATTGTCTTGTT+GGG | 0.448473 | 2.3:-3889550 | MS.gene76152:CDS |
| TGTTCATATGTGACTTGTGT+TGG | 0.449891 | 2.3:+3890974 | None:intergenic |
| AGCAAGGAACATTGTCTTGT+TGG | 0.450367 | 2.3:-3889551 | MS.gene76152:CDS |
| GAAGCCCTGGAAGGTGATGC+TGG | 0.450433 | 2.3:+3889263 | None:intergenic |
| CGCATGCACAATACTCATGC+AGG | 0.450816 | 2.3:-3889383 | MS.gene76152:CDS |
| GTTCATATGTGACTTGTGTT+GGG | 0.451417 | 2.3:+3890975 | None:intergenic |
| TCATCTGCCATTGTTCCATA+AGG | 0.458815 | 2.3:+3889773 | None:intergenic |
| GTAATCAATTGAGTGGTGTA+AGG | 0.460248 | 2.3:-3889346 | MS.gene76152:CDS |
| TTGGAAGAGTTTGCTGTAAG+TGG | 0.460670 | 2.3:-3890496 | MS.gene76152:CDS |
| TGATATTCGTAACTTTAGAA+TGG | 0.461970 | 2.3:-3889858 | MS.gene76152:CDS |
| TGATAATGGTGCTGTCGAAT+TGG | 0.462983 | 2.3:-3890515 | MS.gene76152:CDS |
| ATGGTAATATGAATCAAAAT+CGG | 0.465303 | 2.3:-3890366 | MS.gene76152:CDS |
| AACAAAGCATACATCTCATC+TGG | 0.470575 | 2.3:+3889449 | None:intergenic |
| CTTAGTGGTTTGGGAGGAGG+AGG | 0.471885 | 2.3:+3889941 | None:intergenic |
| AATGTGTTGAGGAGATCATT+TGG | 0.474261 | 2.3:-3889637 | MS.gene76152:CDS |
| TATTCAGACTCCAAGTATAA+GGG | 0.476845 | 2.3:-3890233 | MS.gene76152:CDS |
| ATGTGTTGAGGAGATCATTT+GGG | 0.482047 | 2.3:-3889636 | MS.gene76152:CDS |
| GAAGAATCAATTTCCACAAA+AGG | 0.485391 | 2.3:+3890667 | None:intergenic |
| GTCGCTGCTCTACAAACTCA+TGG | 0.485915 | 2.3:-3889731 | MS.gene76152:CDS |
| GGAGGAGCACACATCATTGT+TGG | 0.486546 | 2.3:+3889959 | None:intergenic |
| AGAAACAAAATTAGGTATAA+CGG | 0.491151 | 2.3:+3890933 | None:intergenic |
| TGAAATGCGGCTTTGTCTTG+TGG | 0.495338 | 2.3:+3890604 | None:intergenic |
| TGCCGGCAAGTACGAAGAAA+AGG | 0.495538 | 2.3:+3890037 | None:intergenic |
| GCTGCTAAGTTCAAAACTAA+AGG | 0.497853 | 2.3:-3890199 | MS.gene76152:CDS |
| ATTGAGTGGTGTAAGGTTAG+TGG | 0.499280 | 2.3:-3889339 | MS.gene76152:CDS |
| CGAGATAGCTTTGAGGTCAA+TGG | 0.501626 | 2.3:-3890542 | MS.gene76152:CDS |
| CATGCAGGGTGGATGTCTCT+TGG | 0.503152 | 2.3:-3889368 | MS.gene76152:CDS |
| GAACTGGACGTACGGGCCAT+TGG | 0.503546 | 2.3:-3889583 | MS.gene76152:CDS |
| AGGGTTGAAATAGGTTAGAG+GGG | 0.504459 | 2.3:+3890849 | None:intergenic |
| GAAGATTGTCGACGCCGGAC+TGG | 0.504746 | 2.3:-3890136 | MS.gene76152:CDS |
| ACAGCAGCCTCCCTTATACT+TGG | 0.506226 | 2.3:+3890223 | None:intergenic |
| CCTTGCTGTGATTGAGCCAA+TGG | 0.508971 | 2.3:+3889567 | None:intergenic |
| TTAGTTAGTGTCCACATCAA+TGG | 0.509598 | 2.3:+3889172 | None:intergenic |
| CAGGCAATTCTCTCAATAGA+CGG | 0.510857 | 2.3:+3890437 | None:intergenic |
| AGGTCAATGGCAGATGATAA+TGG | 0.515834 | 2.3:-3890529 | MS.gene76152:CDS |
| ATGGGTCACTGGGCGTGCGA+TGG | 0.523044 | 2.3:-3889696 | MS.gene76152:CDS |
| TTGCAGTCGAGATAGCTTTG+AGG | 0.526784 | 2.3:-3890549 | MS.gene76152:CDS |
| GAGATGATTTCGATTTGGGA+GGG | 0.527822 | 2.3:+3890830 | None:intergenic |
| ATTTGTAGTGACAACAAAAG+AGG | 0.528653 | 2.3:+3890762 | None:intergenic |
| GACGAGAATGCTTAGAACGT+TGG | 0.531111 | 2.3:-3889667 | MS.gene76152:CDS |
| GGCTTTGTCTTGTGGTGTAA+AGG | 0.531124 | 2.3:+3890612 | None:intergenic |
| TATTGTTCTGAAGTGGAACT+AGG | 0.531691 | 2.3:-3889902 | MS.gene76152:CDS |
| TGTTATTGTTTCTGAAGTCC+GGG | 0.532244 | 2.3:-3889486 | MS.gene76152:CDS |
| ATTTACATGTGTTCATGTGC+CGG | 0.533106 | 2.3:+3890020 | None:intergenic |
| CTCCTCCTCCCAAACCACTA+AGG | 0.533869 | 2.3:-3889940 | MS.gene76152:CDS |
| TACCTCCATAGCAGAAGCCC+TGG | 0.536388 | 2.3:+3889250 | None:intergenic |
| AGGCAATTCTCTCAATAGAC+GGG | 0.537064 | 2.3:+3890438 | None:intergenic |
| AATAATTAGAACTGGACGTA+CGG | 0.539894 | 2.3:-3889591 | MS.gene76152:CDS |
| ACCTGAGTATTGTTCTGAAG+TGG | 0.541843 | 2.3:-3889909 | MS.gene76152:CDS |
| GTTGGAGGCAAATCAGGTGT+AGG | 0.545838 | 2.3:+3889977 | None:intergenic |
| AAGTGGCAAATCAAGAATCA+TGG | 0.546831 | 2.3:-3890479 | MS.gene76152:CDS |
| TTCCAGGGCTTCTGCTATGG+AGG | 0.547985 | 2.3:-3889252 | MS.gene76152:CDS |
| GGTGTAAGGTTAGTGGATGA+AGG | 0.549511 | 2.3:-3889332 | MS.gene76152:CDS |
| ATGTAAATATGTTCACTATG+AGG | 0.549551 | 2.3:-3890005 | MS.gene76152:CDS |
| GATAAGTCCCGGAACAAGAA+AGG | 0.550130 | 2.3:-3889420 | MS.gene76152:CDS |
| ATCCTCCAAATTCATACTAT+CGG | 0.550759 | 2.3:+3890330 | None:intergenic |
| ATAATTAGAACTGGACGTAC+GGG | 0.552693 | 2.3:-3889590 | MS.gene76152:CDS |
| GCAGCCAGCATCACCTTCCA+GGG | 0.553453 | 2.3:-3889267 | MS.gene76152:CDS |
| CTAGTGTTGCTGCTCAAACA+AGG | 0.557349 | 2.3:-3889223 | MS.gene76152:CDS |
| TCATTCATCATCAATGGAGA+TGG | 0.558757 | 2.3:-3891040 | None:intergenic |
| AACCGATAGTATGAATTTGG+AGG | 0.560456 | 2.3:-3890332 | MS.gene76152:CDS |
| AGAATCAATGGCCATTGATG+TGG | 0.562896 | 2.3:-3889183 | MS.gene76152:CDS |
| GGGTTGAAATAGGTTAGAGG+GGG | 0.564873 | 2.3:+3890850 | None:intergenic |
| AGAGATGATTTCGATTTGGG+AGG | 0.566839 | 2.3:+3890829 | None:intergenic |
| TTGGAGGCAAATCAGGTGTA+GGG | 0.575681 | 2.3:+3889978 | None:intergenic |
| ATGGAGATGGAGACAGATGA+AGG | 0.579020 | 2.3:-3891027 | MS.gene76152:CDS |
| AGATGTATGCTTTGTTGGAG+AGG | 0.584633 | 2.3:-3889442 | MS.gene76152:CDS |
| TGGATGAAGGACTGAGAGCA+AGG | 0.584679 | 2.3:-3889319 | MS.gene76152:CDS |
| GCTAAGTTCAAAACTAAAGG+TGG | 0.585659 | 2.3:-3890196 | MS.gene76152:CDS |
| GAGGGTTGAAATAGGTTAGA+GGG | 0.586233 | 2.3:+3890848 | None:intergenic |
| CAGCAGCATGAATTGAGTCT+CGG | 0.589239 | 2.3:-3890391 | MS.gene76152:CDS |
| AGCTCCATGTGAATGTCCCA+CGG | 0.591825 | 2.3:+3889797 | None:intergenic |
| ATGCTATAAAGGAACCAGTC+CGG | 0.595501 | 2.3:+3890122 | None:intergenic |
| GCTATCTCGACTGCAAGCGT+TGG | 0.599582 | 2.3:+3890556 | None:intergenic |
| GGAGCACACATCATTGTTGG+AGG | 0.602292 | 2.3:+3889962 | None:intergenic |
| TGCTGCCTTAGTGGTTTGGG+AGG | 0.608733 | 2.3:+3889935 | None:intergenic |
| CATGAATTGAGTCTCGGAGA+TGG | 0.610889 | 2.3:-3890385 | MS.gene76152:CDS |
| TCGCTGCTCTACAAACTCAT+GGG | 0.610983 | 2.3:-3889730 | MS.gene76152:CDS |
| CTAAAGGTGGTTCTCAGATG+AGG | 0.614681 | 2.3:-3890183 | MS.gene76152:CDS |
| TCCAGCAAGCTCTTGAAATG+CGG | 0.615211 | 2.3:+3890591 | None:intergenic |
| TTGTTGGAGAGGATAAGTCC+CGG | 0.623233 | 2.3:-3889431 | MS.gene76152:CDS |
| TAAGGCAGCTTATCCAGATG+TGG | 0.624770 | 2.3:-3889294 | MS.gene76152:CDS |
| AATGGCCATTGATTCTGTGA+CGG | 0.626987 | 2.3:+3889190 | None:intergenic |
| TTGGGGATATAAATGTGTTG+AGG | 0.628466 | 2.3:-3889648 | MS.gene76152:CDS |
| TCCACCGTGGGACATTCACA+TGG | 0.629581 | 2.3:-3889801 | MS.gene76152:CDS |
| TCCACTTCAGAACAATACTC+AGG | 0.633399 | 2.3:+3889908 | None:intergenic |
| GGCAGCTTATCCAGATGTGG+AGG | 0.633458 | 2.3:-3889291 | MS.gene76152:CDS |
| GGAGCTGCCTTATGGAACAA+TGG | 0.636211 | 2.3:-3889780 | MS.gene76152:CDS |
| TCCATAGCAGAAGCCCTGGA+AGG | 0.636883 | 2.3:+3889254 | None:intergenic |
| ATATCACAGTTGATCCATTG+TGG | 0.637153 | 2.3:+3889875 | None:intergenic |
| ATTGATCGAACAACTGACAA+AGG | 0.638482 | 2.3:+3890718 | None:intergenic |
| GAGCTTGCTGGAGATTCAGG+AGG | 0.643407 | 2.3:-3890580 | MS.gene76152:CDS |
| TGGAACTAGGCGAACCACAA+TGG | 0.651967 | 2.3:-3889889 | MS.gene76152:CDS |
| CAAAAGAAGATTGTCGACGC+CGG | 0.652896 | 2.3:-3890141 | MS.gene76152:CDS |
| CGAGAATGCTTAGAACGTTG+GGG | 0.654390 | 2.3:-3889665 | MS.gene76152:CDS |
| TCTCTTGGTAATCAATTGAG+TGG | 0.668916 | 2.3:-3889353 | MS.gene76152:CDS |
| AATAATGGCTGATCCACCGT+GGG | 0.670381 | 2.3:-3889813 | MS.gene76152:CDS |
| AAGTCCCGGAACAAGAAAGG+TGG | 0.671413 | 2.3:-3889417 | MS.gene76152:CDS |
| AGCTTGCTGGAGATTCAGGA+GGG | 0.676077 | 2.3:-3890579 | MS.gene76152:CDS |
| GCATGCACAATACTCATGCA+GGG | 0.676682 | 2.3:-3889382 | MS.gene76152:CDS |
| TCAGACTCCAAGTATAAGGG+AGG | 0.680031 | 2.3:-3890230 | MS.gene76152:CDS |
| CCATTGGCTCAATCACAGCA+AGG | 0.689265 | 2.3:-3889567 | MS.gene76152:CDS |
| TAATAATGGCTGATCCACCG+TGG | 0.701095 | 2.3:-3889814 | MS.gene76152:CDS |
| TGCACAATACTCATGCAGGG+TGG | 0.701355 | 2.3:-3889379 | MS.gene76152:CDS |
| TCCATGTGAATGTCCCACGG+TGG | 0.777302 | 2.3:+3889800 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATAAGAAATCATTTA+GGG | - | chr2.3:3889903-3889922 | MS.gene76152:CDS | 10.0% |
| !! | TAATTAATAAGAAATCATTT+AGG | - | chr2.3:3889902-3889921 | MS.gene76152:CDS | 10.0% |
| !!! | TTATTATTATAAGGTTTTTG+AGG | + | chr2.3:3889406-3889425 | None:intergenic | 15.0% |
| !! | AGAAACAAAATTAGGTATAA+CGG | + | chr2.3:3889269-3889288 | None:intergenic | 20.0% |
| !! | ATGGTAATATGAATCAAAAT+CGG | - | chr2.3:3889833-3889852 | MS.gene76152:CDS | 20.0% |
| !!! | TCATGGTTTTGAATATAAAT+AGG | - | chr2.3:3889737-3889756 | MS.gene76152:CDS | 20.0% |
| !!! | TTCGAGGTTTTATTATTATA+AGG | + | chr2.3:3889415-3889434 | None:intergenic | 20.0% |
| ! | AAGCTTATTACATGCTATAA+AGG | + | chr2.3:3890091-3890110 | None:intergenic | 25.0% |
| ! | ATGTAAATATGTTCACTATG+AGG | - | chr2.3:3890194-3890213 | MS.gene76152:CDS | 25.0% |
| !! | TGATATTCGTAACTTTAGAA+TGG | - | chr2.3:3890341-3890360 | MS.gene76152:CDS | 25.0% |
| !!! | AACTTTAGAATGGACATATT+AGG | - | chr2.3:3890351-3890370 | MS.gene76152:CDS | 25.0% |
| AATAATTAGAACTGGACGTA+CGG | - | chr2.3:3890608-3890627 | MS.gene76152:CDS | 30.0% | |
| ATCCTCCAAATTCATACTAT+CGG | + | chr2.3:3889872-3889891 | None:intergenic | 30.0% | |
| ATGGACATATTAGGTAAGTT+TGG | - | chr2.3:3890360-3890379 | MS.gene76152:CDS | 30.0% | |
| ATTTGTAGTGACAACAAAAG+AGG | + | chr2.3:3889440-3889459 | None:intergenic | 30.0% | |
| GAAGAATCAATTTCCACAAA+AGG | + | chr2.3:3889535-3889554 | None:intergenic | 30.0% | |
| TATTCAGACTCCAAGTATAA+GGG | - | chr2.3:3889966-3889985 | MS.gene76152:CDS | 30.0% | |
| TCGAGAGAAGAAACAAAATT+AGG | + | chr2.3:3889277-3889296 | None:intergenic | 30.0% | |
| TCTTCATACTGACATTAGTT+TGG | - | chr2.3:3890131-3890150 | MS.gene76152:CDS | 30.0% | |
| TTATTCAGACTCCAAGTATA+AGG | - | chr2.3:3889965-3889984 | MS.gene76152:CDS | 30.0% | |
| TTCCACTTTATCTAGGAAAT+TGG | - | chr2.3:3889552-3889571 | MS.gene76152:CDS | 30.0% | |
| TTGATTCTTCCACTTTATCT+AGG | - | chr2.3:3889545-3889564 | MS.gene76152:CDS | 30.0% | |
| ! | AGGTAAGTTTGGAGTAATAA+TGG | - | chr2.3:3890371-3890390 | MS.gene76152:CDS | 30.0% |
| ! | CTTCATACTGACATTAGTTT+GGG | - | chr2.3:3890132-3890151 | MS.gene76152:CDS | 30.0% |
| ! | TCAATGTTTCTGTTTACTTC+AGG | + | chr2.3:3890687-3890706 | None:intergenic | 30.0% |
| ! | TTTGTTGGTAAGTCACAATA+TGG | + | chr2.3:3890042-3890061 | None:intergenic | 30.0% |
| !! | ATGTTATTGTTTCTGAAGTC+CGG | - | chr2.3:3890712-3890731 | MS.gene76152:CDS | 30.0% |
| !! | TCATGGGCTTATTTTTCTAT+GGG | - | chr2.3:3890485-3890504 | MS.gene76152:CDS | 30.0% |
| !! | TTATTTTTCTATGGGTCACT+GGG | - | chr2.3:3890493-3890512 | MS.gene76152:CDS | 30.0% |
| AACAAAGCATACATCTCATC+TGG | + | chr2.3:3890753-3890772 | None:intergenic | 35.0% | |
| AACCGATAGTATGAATTTGG+AGG | - | chr2.3:3889867-3889886 | MS.gene76152:CDS | 35.0% | |
| AAGTGGCAAATCAAGAATCA+TGG | - | chr2.3:3889720-3889739 | MS.gene76152:CDS | 35.0% | |
| AATGTGTTGAGGAGATCATT+TGG | - | chr2.3:3890562-3890581 | MS.gene76152:CDS | 35.0% | |
| AGATGAGATGTATGCTTTGT+TGG | - | chr2.3:3890752-3890771 | MS.gene76152:CDS | 35.0% | |
| ATAATTAGAACTGGACGTAC+GGG | - | chr2.3:3890609-3890628 | MS.gene76152:CDS | 35.0% | |
| ATATCACAGTTGATCCATTG+TGG | + | chr2.3:3890327-3890346 | None:intergenic | 35.0% | |
| ATGTGTTGAGGAGATCATTT+GGG | - | chr2.3:3890563-3890582 | MS.gene76152:CDS | 35.0% | |
| ATTGATCGAACAACTGACAA+AGG | + | chr2.3:3889484-3889503 | None:intergenic | 35.0% | |
| ATTTACATGTGTTCATGTGC+CGG | + | chr2.3:3890182-3890201 | None:intergenic | 35.0% | |
| CTCCAATTTCCTAGATAAAG+TGG | + | chr2.3:3889557-3889576 | None:intergenic | 35.0% | |
| CTTCAGCGAATAATTAGAAC+TGG | - | chr2.3:3890600-3890619 | MS.gene76152:CDS | 35.0% | |
| GCAAAAATACGAAACTGCTA+AGG | - | chr2.3:3889930-3889949 | MS.gene76152:CDS | 35.0% | |
| GCTAAGTTCAAAACTAAAGG+TGG | - | chr2.3:3890003-3890022 | MS.gene76152:CDS | 35.0% | |
| GCTGCTAAGTTCAAAACTAA+AGG | - | chr2.3:3890000-3890019 | MS.gene76152:CDS | 35.0% | |
| GTAATCAATTGAGTGGTGTA+AGG | - | chr2.3:3890853-3890872 | MS.gene76152:CDS | 35.0% | |
| TGCAACCGATAGTATGAATT+TGG | - | chr2.3:3889864-3889883 | MS.gene76152:CDS | 35.0% | |
| TGGAGAGATGATTTCGATTT+GGG | + | chr2.3:3889376-3889395 | None:intergenic | 35.0% | |
| TTAGTTAGTGTCCACATCAA+TGG | + | chr2.3:3891030-3891049 | None:intergenic | 35.0% | |
| TTGGAGAGATGATTTCGATT+TGG | + | chr2.3:3889377-3889396 | None:intergenic | 35.0% | |
| TTGGGGATATAAATGTGTTG+AGG | - | chr2.3:3890551-3890570 | MS.gene76152:CDS | 35.0% | |
| TTTGTCAGTTGTTCGATCAA+TGG | - | chr2.3:3889483-3889502 | MS.gene76152:CDS | 35.0% | |
| ! | AAGAGAGAACTTTGAGAGAA+AGG | + | chr2.3:3889300-3889319 | None:intergenic | 35.0% |
| ! | ACATTGTCTTGTTGGGATAA+AGG | - | chr2.3:3890656-3890675 | MS.gene76152:CDS | 35.0% |
| ! | ATTTTCCGTCACAGAATCAA+TGG | - | chr2.3:3891004-3891023 | MS.gene76152:CDS | 35.0% |
| ! | CATTGTCTTGTTGGGATAAA+GGG | - | chr2.3:3890657-3890676 | MS.gene76152:CDS | 35.0% |
| ! | GTTCATATGTGACTTGTGTT+GGG | + | chr2.3:3889227-3889246 | None:intergenic | 35.0% |
| ! | TCTCTTGGTAATCAATTGAG+TGG | - | chr2.3:3890846-3890865 | MS.gene76152:CDS | 35.0% |
| ! | TGTTCATATGTGACTTGTGT+TGG | + | chr2.3:3889228-3889247 | None:intergenic | 35.0% |
| ! | TTTAAGTCGACTACCTTTTG+TGG | - | chr2.3:3889519-3889538 | MS.gene76152:CDS | 35.0% |
| !! | CTCATGGGCTTATTTTTCTA+TGG | - | chr2.3:3890484-3890503 | MS.gene76152:CDS | 35.0% |
| !! | CTTATTTTTCTATGGGTCAC+TGG | - | chr2.3:3890492-3890511 | MS.gene76152:CDS | 35.0% |
| !! | TATTGTTCTGAAGTGGAACT+AGG | - | chr2.3:3890297-3890316 | MS.gene76152:CDS | 35.0% |
| !! | TGTTATTGTTTCTGAAGTCC+GGG | - | chr2.3:3890713-3890732 | MS.gene76152:CDS | 35.0% |
| !!! | AAGGTTTTTGAGGTAGTTGT+TGG | + | chr2.3:3889396-3889415 | None:intergenic | 35.0% |
| ACGAGAATGCTTAGAACGTT+GGG | - | chr2.3:3890533-3890552 | MS.gene76152:CDS | 40.0% | |
| AGAATCAATGGCCATTGATG+TGG | - | chr2.3:3891016-3891035 | MS.gene76152:CDS | 40.0% | |
| AGCAAGGAACATTGTCTTGT+TGG | - | chr2.3:3890648-3890667 | MS.gene76152:CDS | 40.0% | |
| AGGCAATTCTCTCAATAGAC+GGG | + | chr2.3:3889764-3889783 | None:intergenic | 40.0% | |
| AGGGTTGAAATAGGTTAGAG+GGG | + | chr2.3:3889353-3889372 | None:intergenic | 40.0% | |
| AGGTCAATGGCAGATGATAA+TGG | - | chr2.3:3889670-3889689 | MS.gene76152:CDS | 40.0% | |
| ATCATTGTTGGAGGCAAATC+AGG | + | chr2.3:3890231-3890250 | None:intergenic | 40.0% | |
| ATGCTATAAAGGAACCAGTC+CGG | + | chr2.3:3890080-3890099 | None:intergenic | 40.0% | |
| ATTGAGTGGTGTAAGGTTAG+TGG | - | chr2.3:3890860-3890879 | MS.gene76152:CDS | 40.0% | |
| CAGGCAATTCTCTCAATAGA+CGG | + | chr2.3:3889765-3889784 | None:intergenic | 40.0% | |
| GAGGGTTGAAATAGGTTAGA+GGG | + | chr2.3:3889354-3889373 | None:intergenic | 40.0% | |
| GGACTAACTTTCTCTGATAC+TGG | + | chr2.3:3889463-3889482 | None:intergenic | 40.0% | |
| TCATCTGCCATTGTTCCATA+AGG | + | chr2.3:3890429-3890448 | None:intergenic | 40.0% | |
| TCCACTTCAGAACAATACTC+AGG | + | chr2.3:3890294-3890313 | None:intergenic | 40.0% | |
| ! | AGATGTATGCTTTGTTGGAG+AGG | - | chr2.3:3890757-3890776 | MS.gene76152:CDS | 40.0% |
| ! | AGTTGATGTTGTGCAGTTTC+AGG | + | chr2.3:3889784-3889803 | None:intergenic | 40.0% |
| ! | CGTCGACAATCTTCTTTTGT+TGG | + | chr2.3:3890057-3890076 | None:intergenic | 40.0% |
| ! | GACAACAAAAGAGGTTTTCG+AGG | + | chr2.3:3889431-3889450 | None:intergenic | 40.0% |
| ! | GCAAGGAACATTGTCTTGTT+GGG | - | chr2.3:3890649-3890668 | MS.gene76152:CDS | 40.0% |
| !! | AATGGCCATTGATTCTGTGA+CGG | + | chr2.3:3891012-3891031 | None:intergenic | 40.0% |
| !! | ACCTGAGTATTGTTCTGAAG+TGG | - | chr2.3:3890290-3890309 | MS.gene76152:CDS | 40.0% |
| !! | AGAGATGATTTCGATTTGGG+AGG | + | chr2.3:3889373-3889392 | None:intergenic | 40.0% |
| !! | CATACATCTCATCTGGCTTT+CGG | + | chr2.3:3890746-3890765 | None:intergenic | 40.0% |
| !! | GAGATGATTTCGATTTGGGA+GGG | + | chr2.3:3889372-3889391 | None:intergenic | 40.0% |
| !! | TGATAATGGTGCTGTCGAAT+TGG | - | chr2.3:3889684-3889703 | MS.gene76152:CDS | 40.0% |
| !! | TTGGAAGAGTTTGCTGTAAG+TGG | - | chr2.3:3889703-3889722 | MS.gene76152:CDS | 40.0% |
| AACTCCACCTTTCTTGTTCC+GGG | + | chr2.3:3890789-3890808 | None:intergenic | 45.0% | |
| AATAATGGCTGATCCACCGT+GGG | - | chr2.3:3890386-3890405 | MS.gene76152:CDS | 45.0% | |
| AGGACTGAGAGCAAGGTTTA+AGG | - | chr2.3:3890887-3890906 | MS.gene76152:CDS | 45.0% | |
| ATGGAGATGGAGACAGATGA+AGG | - | chr2.3:3889172-3889191 | MS.gene76152:CDS | 45.0% | |
| ATTCACATGGAGCTGCCTTA+TGG | - | chr2.3:3890411-3890430 | MS.gene76152:CDS | 45.0% | |
| CAAAAGAAGATTGTCGACGC+CGG | - | chr2.3:3890058-3890077 | MS.gene76152:CDS | 45.0% | |
| CAACTCCACCTTTCTTGTTC+CGG | + | chr2.3:3890790-3890809 | None:intergenic | 45.0% | |
| CAGCAGCATGAATTGAGTCT+CGG | - | chr2.3:3889808-3889827 | MS.gene76152:CDS | 45.0% | |
| CATGAATTGAGTCTCGGAGA+TGG | - | chr2.3:3889814-3889833 | MS.gene76152:CDS | 45.0% | |
| CGAGAATGCTTAGAACGTTG+GGG | - | chr2.3:3890534-3890553 | MS.gene76152:CDS | 45.0% | |
| CTAAAGGTGGTTCTCAGATG+AGG | - | chr2.3:3890016-3890035 | MS.gene76152:CDS | 45.0% | |
| GACGAGAATGCTTAGAACGT+TGG | - | chr2.3:3890532-3890551 | MS.gene76152:CDS | 45.0% | |
| GATAAGTCCCGGAACAAGAA+AGG | - | chr2.3:3890779-3890798 | MS.gene76152:CDS | 45.0% | |
| GCATGCACAATACTCATGCA+GGG | - | chr2.3:3890817-3890836 | MS.gene76152:CDS | 45.0% | |
| GGAGGGTTGAAATAGGTTAG+AGG | + | chr2.3:3889355-3889374 | None:intergenic | 45.0% | |
| GGGTTGAAATAGGTTAGAGG+GGG | + | chr2.3:3889352-3889371 | None:intergenic | 45.0% | |
| TAAGGCAGCTTATCCAGATG+TGG | - | chr2.3:3890905-3890924 | MS.gene76152:CDS | 45.0% | |
| TAATAATGGCTGATCCACCG+TGG | - | chr2.3:3890385-3890404 | MS.gene76152:CDS | 45.0% | |
| TCAGACTCCAAGTATAAGGG+AGG | - | chr2.3:3889969-3889988 | MS.gene76152:CDS | 45.0% | |
| TCCAGCAAGCTCTTGAAATG+CGG | + | chr2.3:3889611-3889630 | None:intergenic | 45.0% | |
| TCGCTGCTCTACAAACTCAT+GGG | - | chr2.3:3890469-3890488 | MS.gene76152:CDS | 45.0% | |
| TTGGAGGCAAATCAGGTGTA+GGG | + | chr2.3:3890224-3890243 | None:intergenic | 45.0% | |
| TTGTTGGAGAGGATAAGTCC+CGG | - | chr2.3:3890768-3890787 | MS.gene76152:CDS | 45.0% | |
| ! | AAATAGGTTAGAGGGGGTGT+AGG | + | chr2.3:3889346-3889365 | None:intergenic | 45.0% |
| ! | CGATTTGGGAGGGTTGAAAT+AGG | + | chr2.3:3889362-3889381 | None:intergenic | 45.0% |
| ! | CTAGTGTTGCTGCTCAAACA+AGG | - | chr2.3:3890976-3890995 | MS.gene76152:CDS | 45.0% |
| ! | GGCTTTGTCTTGTGGTGTAA+AGG | + | chr2.3:3889590-3889609 | None:intergenic | 45.0% |
| ! | GGTGTAAGGTTAGTGGATGA+AGG | - | chr2.3:3890867-3890886 | MS.gene76152:CDS | 45.0% |
| ! | GTCCTTTTCTTCGTACTTGC+CGG | - | chr2.3:3890160-3890179 | MS.gene76152:CDS | 45.0% |
| ! | TGAAATGCGGCTTTGTCTTG+TGG | + | chr2.3:3889598-3889617 | None:intergenic | 45.0% |
| ! | TTGCAGTCGAGATAGCTTTG+AGG | - | chr2.3:3889650-3889669 | MS.gene76152:CDS | 45.0% |
| !! | CGAGATAGCTTTGAGGTCAA+TGG | - | chr2.3:3889657-3889676 | MS.gene76152:CDS | 45.0% |
| AAGTCCCGGAACAAGAAAGG+TGG | - | chr2.3:3890782-3890801 | MS.gene76152:CDS | 50.0% | |
| ACAGCAGCCTCCCTTATACT+TGG | + | chr2.3:3889979-3889998 | None:intergenic | 50.0% | |
| AGCTCCATGTGAATGTCCCA+CGG | + | chr2.3:3890405-3890424 | None:intergenic | 50.0% | |
| CGCATGCACAATACTCATGC+AGG | - | chr2.3:3890816-3890835 | MS.gene76152:CDS | 50.0% | |
| GGAGCACACATCATTGTTGG+AGG | + | chr2.3:3890240-3890259 | None:intergenic | 50.0% | |
| GGAGCTGCCTTATGGAACAA+TGG | - | chr2.3:3890419-3890438 | MS.gene76152:CDS | 50.0% | |
| GGGGTGTAGGAGAAAAAGGA+CGG | + | chr2.3:3889333-3889352 | None:intergenic | 50.0% | |
| GTCGCTGCTCTACAAACTCA+TGG | - | chr2.3:3890468-3890487 | MS.gene76152:CDS | 50.0% | |
| GTGTAGGAGAAAAAGGACGG+TGG | + | chr2.3:3889330-3889349 | None:intergenic | 50.0% | |
| GTTGGAGGCAAATCAGGTGT+AGG | + | chr2.3:3890225-3890244 | None:intergenic | 50.0% | |
| TGCACAATACTCATGCAGGG+TGG | - | chr2.3:3890820-3890839 | MS.gene76152:CDS | 50.0% | |
| TGCCGGCAAGTACGAAGAAA+AGG | + | chr2.3:3890165-3890184 | None:intergenic | 50.0% | |
| TGGAACTAGGCGAACCACAA+TGG | - | chr2.3:3890310-3890329 | MS.gene76152:CDS | 50.0% | |
| TGGATGAAGGACTGAGAGCA+AGG | - | chr2.3:3890880-3890899 | MS.gene76152:CDS | 50.0% | |
| ! | AGAGGGGGTGTAGGAGAAAA+AGG | + | chr2.3:3889337-3889356 | None:intergenic | 50.0% |
| ! | CCTTGCTGTGATTGAGCCAA+TGG | + | chr2.3:3890635-3890654 | None:intergenic | 50.0% |
| ! | GGAGGAGCACACATCATTGT+TGG | + | chr2.3:3890243-3890262 | None:intergenic | 50.0% |
| !! | AGCTTGCTGGAGATTCAGGA+GGG | - | chr2.3:3889620-3889639 | MS.gene76152:CDS | 50.0% |
| !! | CAAGAGCTTGCTGGAGATTC+AGG | - | chr2.3:3889616-3889635 | MS.gene76152:CDS | 50.0% |
| !! | CCATTGGCTCAATCACAGCA+AGG | - | chr2.3:3890632-3890651 | MS.gene76152:CDS | 50.0% |
| ACCTTCCAGGGCTTCTGCTA+TGG | - | chr2.3:3890944-3890963 | MS.gene76152:CDS | 55.0% | |
| CATGCAGGGTGGATGTCTCT+TGG | - | chr2.3:3890831-3890850 | MS.gene76152:CDS | 55.0% | |
| CGCTGCTGCCTTAGTGGTTT+GGG | + | chr2.3:3890270-3890289 | None:intergenic | 55.0% | |
| CTCCTCCTCCCAAACCACTA+AGG | - | chr2.3:3890259-3890278 | MS.gene76152:CDS | 55.0% | |
| GCCGCATTTCAAGAGCTTGC+TGG | - | chr2.3:3889607-3889626 | MS.gene76152:CDS | 55.0% | |
| GCTATCTCGACTGCAAGCGT+TGG | + | chr2.3:3889646-3889665 | None:intergenic | 55.0% | |
| GGCAGCTTATCCAGATGTGG+AGG | - | chr2.3:3890908-3890927 | MS.gene76152:CDS | 55.0% | |
| TACCTCCATAGCAGAAGCCC+TGG | + | chr2.3:3890952-3890971 | None:intergenic | 55.0% | |
| TCCACCGTGGGACATTCACA+TGG | - | chr2.3:3890398-3890417 | MS.gene76152:CDS | 55.0% | |
| TCCATAGCAGAAGCCCTGGA+AGG | + | chr2.3:3890948-3890967 | None:intergenic | 55.0% | |
| TCCATGTGAATGTCCCACGG+TGG | + | chr2.3:3890402-3890421 | None:intergenic | 55.0% | |
| TCGCTGCTGCCTTAGTGGTT+TGG | + | chr2.3:3890271-3890290 | None:intergenic | 55.0% | |
| TTCCAGGGCTTCTGCTATGG+AGG | - | chr2.3:3890947-3890966 | MS.gene76152:CDS | 55.0% | |
| ! | CTGGCTTTCGGCTTGTTTCC+CGG | + | chr2.3:3890734-3890753 | None:intergenic | 55.0% |
| ! | CTTAGTGGTTTGGGAGGAGG+AGG | + | chr2.3:3890261-3890280 | None:intergenic | 55.0% |
| ! | TGCCTTAGTGGTTTGGGAGG+AGG | + | chr2.3:3890264-3890283 | None:intergenic | 55.0% |
| ! | TGCTGCCTTAGTGGTTTGGG+AGG | + | chr2.3:3890267-3890286 | None:intergenic | 55.0% |
| !! | GAGCTTGCTGGAGATTCAGG+AGG | - | chr2.3:3889619-3889638 | MS.gene76152:CDS | 55.0% |
| ACTGGGCGTGCGATGGAACT+TGG | - | chr2.3:3890510-3890529 | MS.gene76152:CDS | 60.0% | |
| GAACTGGACGTACGGGCCAT+TGG | - | chr2.3:3890616-3890635 | MS.gene76152:CDS | 60.0% | |
| GAAGATTGTCGACGCCGGAC+TGG | - | chr2.3:3890063-3890082 | MS.gene76152:CDS | 60.0% | |
| GAAGCCCTGGAAGGTGATGC+TGG | + | chr2.3:3890939-3890958 | None:intergenic | 60.0% | |
| GCAGCCAGCATCACCTTCCA+GGG | - | chr2.3:3890932-3890951 | MS.gene76152:CDS | 60.0% | |
| TCAGGTCGCTGCTGCCTTAG+TGG | + | chr2.3:3890276-3890295 | None:intergenic | 60.0% | |
| TGCAGCCAGCATCACCTTCC+AGG | - | chr2.3:3890931-3890950 | MS.gene76152:CDS | 60.0% | |
| ATGGGTCACTGGGCGTGCGA+TGG | - | chr2.3:3890503-3890522 | MS.gene76152:CDS | 65.0% | |
| GCTGGCTGCACCTCCACATC+TGG | + | chr2.3:3890921-3890940 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 3889172 | 3891049 | 3889172 | ID=MS.gene76152 |
| chr2.3 | mRNA | 3889172 | 3891049 | 3889172 | ID=MS.gene76152.t1;Parent=MS.gene76152 |
| chr2.3 | exon | 3889172 | 3891049 | 3889172 | ID=MS.gene76152.t1.exon1;Parent=MS.gene76152.t1 |
| chr2.3 | CDS | 3889172 | 3891049 | 3889172 | ID=cds.MS.gene76152.t1;Parent=MS.gene76152.t1 |
| Gene Sequence |
| Protein sequence |
