Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76256.t1 | KEH44277.1 | 75.8 | 480 | 27 | 1 | 1 | 480 | 47 | 437 | 5.30E-197 | 697.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76256.t1 | Q9LXQ8 | 25.6 | 277 | 172 | 8 | 1 | 273 | 1 | 247 | 4.7e-08 | 60.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76256.t1 | A0A072VR65 | 75.8 | 480 | 27 | 1 | 1 | 480 | 47 | 437 | 3.8e-197 | 697.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056174 | MS.gene76256 | 0.819536 | 1.10E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76256.t1 | MTR_1g111630 | 92.722 | 316 | 23 | 0 | 165 | 480 | 122 | 437 | 0.0 | 572 |
| MS.gene76256.t1 | MTR_1g111630 | 95.946 | 74 | 3 | 0 | 1 | 74 | 47 | 120 | 7.53e-40 | 149 |
| MS.gene76256.t1 | MTR_7g116580 | 56.967 | 488 | 196 | 7 | 2 | 478 | 3 | 487 | 2.47e-175 | 501 |
| MS.gene76256.t1 | MTR_7g114090 | 55.602 | 482 | 200 | 7 | 2 | 480 | 3 | 473 | 7.44e-164 | 471 |
| MS.gene76256.t1 | MTR_7g116250 | 63.374 | 243 | 84 | 3 | 2 | 239 | 3 | 245 | 8.08e-93 | 282 |
| MS.gene76256.t1 | MTR_5g090500 | 49.167 | 240 | 94 | 4 | 88 | 324 | 5 | 219 | 3.75e-55 | 184 |
| MS.gene76256.t1 | MTR_2g064400 | 29.291 | 437 | 246 | 14 | 6 | 410 | 18 | 423 | 2.42e-40 | 152 |
| MS.gene76256.t1 | MTR_7g105510 | 37.647 | 255 | 138 | 8 | 5 | 259 | 35 | 268 | 1.13e-36 | 138 |
| MS.gene76256.t1 | MTR_6g013240 | 37.795 | 254 | 136 | 6 | 5 | 256 | 75 | 308 | 4.68e-35 | 139 |
| MS.gene76256.t1 | MTR_7g116260 | 54.783 | 115 | 50 | 1 | 324 | 436 | 3 | 117 | 5.78e-35 | 127 |
| MS.gene76256.t1 | MTR_6g013380 | 37.795 | 254 | 136 | 6 | 5 | 256 | 70 | 303 | 5.88e-35 | 138 |
| MS.gene76256.t1 | MTR_7g095350 | 35.842 | 279 | 158 | 8 | 6 | 284 | 12 | 269 | 2.62e-34 | 134 |
| MS.gene76256.t1 | MTR_7g095350 | 35.842 | 279 | 158 | 8 | 6 | 284 | 12 | 269 | 2.90e-34 | 134 |
| MS.gene76256.t1 | MTR_7g095350 | 35.842 | 279 | 158 | 8 | 6 | 284 | 20 | 277 | 3.38e-34 | 134 |
| MS.gene76256.t1 | MTR_6g471290 | 29.360 | 453 | 267 | 14 | 5 | 435 | 496 | 917 | 1.42e-33 | 135 |
| MS.gene76256.t1 | MTR_6g471290 | 28.382 | 377 | 211 | 13 | 5 | 360 | 28 | 366 | 1.80e-18 | 89.4 |
| MS.gene76256.t1 | MTR_7g095350 | 35.842 | 279 | 158 | 8 | 6 | 284 | 20 | 277 | 2.73e-33 | 133 |
| MS.gene76256.t1 | MTR_7g095350 | 35.842 | 279 | 158 | 8 | 6 | 284 | 12 | 269 | 2.94e-33 | 133 |
| MS.gene76256.t1 | MTR_7g092650 | 36.059 | 269 | 149 | 10 | 6 | 273 | 38 | 284 | 8.39e-32 | 127 |
| MS.gene76256.t1 | MTR_7g095560 | 33.216 | 283 | 160 | 8 | 7 | 284 | 16 | 274 | 2.19e-31 | 127 |
| MS.gene76256.t1 | MTR_7g117735 | 55.556 | 90 | 39 | 1 | 391 | 480 | 1 | 89 | 2.40e-29 | 110 |
| MS.gene76256.t1 | MTR_3g009910 | 33.218 | 289 | 150 | 9 | 7 | 284 | 16 | 272 | 2.22e-28 | 117 |
| MS.gene76256.t1 | MTR_3g009910 | 33.218 | 289 | 150 | 9 | 7 | 284 | 16 | 272 | 4.76e-28 | 117 |
| MS.gene76256.t1 | MTR_7g089620 | 37.549 | 253 | 130 | 10 | 5 | 249 | 22 | 254 | 4.39e-27 | 113 |
| MS.gene76256.t1 | MTR_7g095390 | 39.773 | 176 | 90 | 5 | 6 | 178 | 11 | 173 | 1.63e-26 | 105 |
| MS.gene76256.t1 | MTR_7g087040 | 33.788 | 293 | 167 | 10 | 5 | 297 | 9 | 274 | 8.37e-26 | 111 |
| MS.gene76256.t1 | MTR_7g089570 | 37.200 | 250 | 130 | 10 | 5 | 249 | 47 | 274 | 1.23e-25 | 109 |
| MS.gene76256.t1 | MTR_7g087840 | 35.950 | 242 | 139 | 6 | 5 | 246 | 9 | 234 | 2.85e-25 | 109 |
| MS.gene76256.t1 | MTR_7g089610 | 35.060 | 251 | 134 | 9 | 5 | 249 | 45 | 272 | 1.42e-24 | 107 |
| MS.gene76256.t1 | MTR_7g095340 | 38.172 | 186 | 92 | 6 | 6 | 186 | 11 | 178 | 3.66e-22 | 97.4 |
| MS.gene76256.t1 | MTR_6g071510 | 28.610 | 374 | 214 | 12 | 5 | 360 | 9 | 347 | 3.01e-18 | 88.2 |
| MS.gene76256.t1 | MTR_4g103670 | 23.235 | 439 | 270 | 13 | 2 | 435 | 25 | 401 | 1.18e-17 | 85.5 |
| MS.gene76256.t1 | MTR_8g468470 | 25.859 | 495 | 307 | 16 | 2 | 480 | 14 | 464 | 4.95e-15 | 77.8 |
| MS.gene76256.t1 | MTR_5g024120 | 40.187 | 107 | 53 | 3 | 5 | 111 | 9 | 104 | 5.97e-14 | 73.6 |
| MS.gene76256.t1 | MTR_2g032920 | 30.568 | 229 | 104 | 8 | 64 | 284 | 8 | 189 | 1.33e-13 | 72.4 |
| MS.gene76256.t1 | MTR_7g111110 | 35.714 | 98 | 48 | 2 | 5 | 102 | 9 | 91 | 5.09e-12 | 62.4 |
| MS.gene76256.t1 | MTR_1g013580 | 23.581 | 458 | 258 | 19 | 1 | 437 | 18 | 404 | 2.05e-11 | 66.2 |
| MS.gene76256.t1 | MTR_2g072530 | 27.465 | 142 | 80 | 2 | 2 | 143 | 13 | 131 | 2.14e-11 | 66.2 |
| MS.gene76256.t1 | MTR_3g448340 | 27.193 | 228 | 132 | 6 | 2 | 225 | 6 | 203 | 3.05e-11 | 65.9 |
| MS.gene76256.t1 | MTR_7g105980 | 24.033 | 362 | 208 | 12 | 83 | 436 | 36 | 338 | 6.74e-11 | 64.3 |
| MS.gene76256.t1 | MTR_7g105980 | 25.110 | 227 | 153 | 6 | 217 | 436 | 52 | 268 | 9.50e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTATTCGCTCAAGTTTC+TGG | 0.108556 | 1.1:-78782872 | None:intergenic |
| GGTGCAGGCTATGGGCTTTA+AGG | 0.216097 | 1.1:+78781010 | MS.gene76256:CDS |
| ACTCCAATGAAGTGAGTTTA+AGG | 0.216391 | 1.1:-78781704 | None:intergenic |
| TTTGATATCCACAATGTTCT+TGG | 0.239020 | 1.1:+78781045 | MS.gene76256:CDS |
| TACGAATTCTCTTTAATATA+GGG | 0.251053 | 1.1:-78781764 | None:intergenic |
| ATACGAATTCTCTTTAATAT+AGG | 0.258107 | 1.1:-78781765 | None:intergenic |
| CGTATCCAACAACACCAAAA+AGG | 0.265100 | 1.1:+78781656 | MS.gene76256:CDS |
| GAGATCAGAGTTATTGAATT+AGG | 0.290784 | 1.1:+78782792 | MS.gene76256:CDS |
| CTGGGACATCTTAAGTGATT+TGG | 0.307332 | 1.1:+78782049 | MS.gene76256:CDS |
| AAAGGAAAACTTGTAACGTT+TGG | 0.330760 | 1.1:-78781358 | None:intergenic |
| TGAACTTGATATTCTGCAAT+TGG | 0.342964 | 1.1:+78781842 | MS.gene76256:CDS |
| GAGATGGAACTACTAGAAAC+TGG | 0.344032 | 1.1:+78781072 | MS.gene76256:CDS |
| TTGCCTTAAACTCACTTCAT+TGG | 0.356028 | 1.1:+78781701 | MS.gene76256:CDS |
| CTAGAAGGTGGTGCAGGCTA+TGG | 0.362796 | 1.1:+78781001 | MS.gene76256:CDS |
| GGAGTACTTTGGTCCTGGTT+TGG | 0.368315 | 1.1:+78781722 | MS.gene76256:CDS |
| CCTCCTGTGTGGTCTCAAAA+TGG | 0.369197 | 1.1:+78782942 | MS.gene76256:CDS |
| AAGGATGAACTCACTATCTT+TGG | 0.371593 | 1.1:-78781603 | None:intergenic |
| TATAGGGGTGTTGATGTAAA+AGG | 0.374304 | 1.1:-78781748 | None:intergenic |
| AACTATTCGCTCAAGTTTCT+GGG | 0.377227 | 1.1:-78782871 | None:intergenic |
| CTTCAAAATTCATAACAAAC+TGG | 0.391209 | 1.1:-78781182 | None:intergenic |
| AAGGAAAACTTGTAACGTTT+GGG | 0.394349 | 1.1:-78781357 | None:intergenic |
| TTTAACCTCAAGATGACATA+AGG | 0.405654 | 1.1:-78781622 | None:intergenic |
| TAAAGTCACAGTTGGTGAAA+TGG | 0.406619 | 1.1:-78781446 | None:intergenic |
| TTTGCAGAAACTTTCAATCA+TGG | 0.409293 | 1.1:+78782118 | MS.gene76256:CDS |
| TGTGAACATAGTAACAATAT+TGG | 0.414415 | 1.1:+78781246 | MS.gene76256:CDS |
| GCAATTGGACATCTATTCAA+TGG | 0.420756 | 1.1:+78781857 | MS.gene76256:CDS |
| CTCACTTCATTGGAGTACTT+TGG | 0.422195 | 1.1:+78781711 | MS.gene76256:CDS |
| ACATATTCGTCGGATATAAC+TGG | 0.425159 | 1.1:-78781789 | None:intergenic |
| ATCCCTACTCAGATCAAAAT+CGG | 0.428670 | 1.1:-78781139 | None:intergenic |
| TAGGAGGCTGTGTTGGCAAT+TGG | 0.435357 | 1.1:+78782811 | MS.gene76256:CDS |
| TCATTGGAGTACTTTGGTCC+TGG | 0.441126 | 1.1:+78781717 | MS.gene76256:CDS |
| ATTGAAAGTTTCTGCAAATG+AGG | 0.441234 | 1.1:-78782113 | None:intergenic |
| TAGAAGGTGGTGCAGGCTAT+GGG | 0.447712 | 1.1:+78781002 | MS.gene76256:CDS |
| GAGAACACGACTCGGTGGAT+TGG | 0.450224 | 1.1:+78782910 | MS.gene76256:CDS |
| AAACCAGCATACTGTCTAGA+AGG | 0.465967 | 1.1:+78780986 | MS.gene76256:CDS |
| TGAACTGTTTATTACAAGTC+TGG | 0.472241 | 1.1:+78781518 | MS.gene76256:CDS |
| GCAAATGAGGAAAAGTTTGA+AGG | 0.479088 | 1.1:-78782100 | None:intergenic |
| TACTGTCTAGAAGGTGGTGC+AGG | 0.496881 | 1.1:+78780995 | MS.gene76256:CDS |
| CAAACCACAGTAGAATCTCT+AGG | 0.508160 | 1.1:-78781111 | None:intergenic |
| ATATGAGACAAAATGCAATC+AGG | 0.517411 | 1.1:-78780931 | None:intergenic |
| AACTTGTAACGTTTGGGTGA+AGG | 0.525690 | 1.1:-78781351 | None:intergenic |
| ATAGTAACAATATTGGTCAA+TGG | 0.525820 | 1.1:+78781253 | MS.gene76256:CDS |
| GAACAGAATAAAGTCACAGT+TGG | 0.528023 | 1.1:-78781454 | None:intergenic |
| ACGAATTCTCTTTAATATAG+GGG | 0.533936 | 1.1:-78781763 | None:intergenic |
| CTTCGAGGTGAAGATGTAGT+TGG | 0.535087 | 1.1:+78782987 | MS.gene76256:CDS |
| TCATCATACAGTGGTCGCCC+TGG | 0.536037 | 1.1:+78782030 | MS.gene76256:CDS |
| GAGTCGTGTTCTCCACGATA+AGG | 0.541060 | 1.1:-78782900 | None:intergenic |
| TTCATCCTTATGTCATCTTG+AGG | 0.541581 | 1.1:+78781617 | MS.gene76256:CDS |
| TACACTTGGAAGTACAAAAG+TGG | 0.541689 | 1.1:+78781494 | MS.gene76256:CDS |
| ATGTAAAAGGTCTCCAAACC+AGG | 0.542950 | 1.1:-78781735 | None:intergenic |
| GATCTTCGAAAATAAGTCAA+AGG | 0.545510 | 1.1:-78781376 | None:intergenic |
| GAAGGACCGAGATGTGCATA+AGG | 0.550308 | 1.1:-78781333 | None:intergenic |
| CAAATCACTTAAGATGTCCC+AGG | 0.551190 | 1.1:-78782048 | None:intergenic |
| ATTGAATTAGGAGGCTGTGT+TGG | 0.553961 | 1.1:+78782804 | MS.gene76256:CDS |
| CATCATACAGTGGTCGCCCT+GGG | 0.556158 | 1.1:+78782031 | MS.gene76256:CDS |
| ATCAGAGTTATTGAATTAGG+AGG | 0.556473 | 1.1:+78782795 | MS.gene76256:CDS |
| CAATGTTCTTGGAAGCGAGA+TGG | 0.556919 | 1.1:+78781056 | MS.gene76256:CDS |
| AAACCACAGTAGAATCTCTA+GGG | 0.580622 | 1.1:-78781110 | None:intergenic |
| AATTTGAGATCACTTACACT+TGG | 0.596020 | 1.1:+78781480 | MS.gene76256:CDS |
| TAAGGCAATCTAGTGAACAA+AGG | 0.596682 | 1.1:-78781686 | None:intergenic |
| GGAAGGCCTTATGCACATCT+CGG | 0.597195 | 1.1:+78781327 | MS.gene76256:CDS |
| AGATGGAACTACTAGAAACT+GGG | 0.602469 | 1.1:+78781073 | MS.gene76256:CDS |
| CCACCTTCTAGACAGTATGC+TGG | 0.603431 | 1.1:-78780989 | None:intergenic |
| AAATGCATTAACATATTCGT+CGG | 0.604532 | 1.1:-78781799 | None:intergenic |
| AATCTAAATAGAAGTTCACT+AGG | 0.611146 | 1.1:-78781224 | None:intergenic |
| AATTGTTTAAGATGTTTGAG+TGG | 0.613055 | 1.1:-78782002 | None:intergenic |
| GGTCTCAAAATGGCTGTCGA+AGG | 0.615882 | 1.1:+78782952 | MS.gene76256:CDS |
| AGGATTAGTGAAAAGCTTCG+AGG | 0.642393 | 1.1:+78782972 | MS.gene76256:CDS |
| GGAAATCTGATCCTCCTGTG+TGG | 0.644829 | 1.1:+78782931 | MS.gene76256:CDS |
| TCGTGGAGAACACGACTCGG+TGG | 0.646236 | 1.1:+78782905 | MS.gene76256:CDS |
| AAATCACTTAAGATGTCCCA+GGG | 0.649212 | 1.1:-78782047 | None:intergenic |
| TCTCGCTTCCAAGAACATTG+TGG | 0.657652 | 1.1:-78781053 | None:intergenic |
| CCAGCATACTGTCTAGAAGG+TGG | 0.674295 | 1.1:+78780989 | MS.gene76256:CDS |
| TTATCGTGGAGAACACGACT+CGG | 0.684209 | 1.1:+78782902 | MS.gene76256:CDS |
| AATTGAACTTCATCATACAG+TGG | 0.702341 | 1.1:+78782021 | MS.gene76256:CDS |
| ACTCCCTAGAGATTCTACTG+TGG | 0.716403 | 1.1:+78781107 | MS.gene76256:CDS |
| GATGGAACTACTAGAAACTG+GGG | 0.740906 | 1.1:+78781074 | MS.gene76256:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATAACTATAAATATAAG+AGG | - | chr1.1:78782596-78782615 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTTAATGATCTT+TGG | - | chr1.1:78782738-78782757 | None:intergenic | 15.0% |
| !! | ATACGAATTCTCTTTAATAT+AGG | - | chr1.1:78781768-78781787 | None:intergenic | 20.0% |
| !! | ATCAAATCAAAGTTTAGATT+TGG | - | chr1.1:78782343-78782362 | None:intergenic | 20.0% |
| !! | TACGAATTCTCTTTAATATA+GGG | - | chr1.1:78781767-78781786 | None:intergenic | 20.0% |
| !! | TCAAAAAGAGAAATCAAAAT+AGG | - | chr1.1:78782703-78782722 | None:intergenic | 20.0% |
| !! | TTAATTTATGAATGAAGTCA+TGG | - | chr1.1:78782213-78782232 | None:intergenic | 20.0% |
| !!! | ATTAAGTTATTCTTTTGATC+TGG | + | chr1.1:78782228-78782247 | MS.gene76256:intron | 20.0% |
| ! | AAAATACGCCAAACATAAAA+TGG | - | chr1.1:78782489-78782508 | None:intergenic | 25.0% |
| ! | AAATGCATTAACATATTCGT+CGG | - | chr1.1:78781802-78781821 | None:intergenic | 25.0% |
| ! | AAGAGAAATCAAAATAGGAA+TGG | - | chr1.1:78782698-78782717 | None:intergenic | 25.0% |
| ! | AATCTAAATAGAAGTTCACT+AGG | - | chr1.1:78781227-78781246 | None:intergenic | 25.0% |
| ! | ACGAATTCTCTTTAATATAG+GGG | - | chr1.1:78781766-78781785 | None:intergenic | 25.0% |
| ! | ATAGTAACAATATTGGTCAA+TGG | + | chr1.1:78781253-78781272 | MS.gene76256:CDS | 25.0% |
| ! | CTTCAAAATTCATAACAAAC+TGG | - | chr1.1:78781185-78781204 | None:intergenic | 25.0% |
| ! | GTTTAGATTTGGAAAGATAA+TGG | - | chr1.1:78782332-78782351 | None:intergenic | 25.0% |
| ! | TGTGAACATAGTAACAATAT+TGG | + | chr1.1:78781246-78781265 | MS.gene76256:CDS | 25.0% |
| !! | AATTGTTTAAGATGTTTGAG+TGG | - | chr1.1:78782005-78782024 | None:intergenic | 25.0% |
| !!! | CAGTTTGTTATGAATTTTGA+AGG | + | chr1.1:78781183-78781202 | MS.gene76256:CDS | 25.0% |
| AAAGGAAAACTTGTAACGTT+TGG | - | chr1.1:78781361-78781380 | None:intergenic | 30.0% | |
| AAGGAAAACTTGTAACGTTT+GGG | - | chr1.1:78781360-78781379 | None:intergenic | 30.0% | |
| AATTGAACTTCATCATACAG+TGG | + | chr1.1:78782021-78782040 | MS.gene76256:CDS | 30.0% | |
| AGAAATCTTTCTTAGACGTA+TGG | + | chr1.1:78782634-78782653 | MS.gene76256:intron | 30.0% | |
| ATATGAGACAAAATGCAATC+AGG | - | chr1.1:78780934-78780953 | None:intergenic | 30.0% | |
| ATCAGAGTTATTGAATTAGG+AGG | + | chr1.1:78782795-78782814 | MS.gene76256:CDS | 30.0% | |
| ATTGAAAGTTTCTGCAAATG+AGG | - | chr1.1:78782116-78782135 | None:intergenic | 30.0% | |
| GAGATCAGAGTTATTGAATT+AGG | + | chr1.1:78782792-78782811 | MS.gene76256:CDS | 30.0% | |
| GATCTTCGAAAATAAGTCAA+AGG | - | chr1.1:78781379-78781398 | None:intergenic | 30.0% | |
| TCAACAATCACTCTCTTATT+AGG | + | chr1.1:78782444-78782463 | MS.gene76256:intron | 30.0% | |
| TCTTATTAGGTGAAATCATG+CGG | + | chr1.1:78782457-78782476 | MS.gene76256:intron | 30.0% | |
| TGAACTGTTTATTACAAGTC+TGG | + | chr1.1:78781518-78781537 | MS.gene76256:CDS | 30.0% | |
| TGAACTTGATATTCTGCAAT+TGG | + | chr1.1:78781842-78781861 | MS.gene76256:CDS | 30.0% | |
| TTTAACCTCAAGATGACATA+AGG | - | chr1.1:78781625-78781644 | None:intergenic | 30.0% | |
| TTTACATTTAGACTAGTGCT+AGG | + | chr1.1:78782397-78782416 | MS.gene76256:intron | 30.0% | |
| TTTGATATCCACAATGTTCT+TGG | + | chr1.1:78781045-78781064 | MS.gene76256:CDS | 30.0% | |
| TTTGCAGAAACTTTCAATCA+TGG | + | chr1.1:78782118-78782137 | MS.gene76256:CDS | 30.0% | |
| ! | AATTTGAGATCACTTACACT+TGG | + | chr1.1:78781480-78781499 | MS.gene76256:CDS | 30.0% |
| ! | ATAAATATAAGAGGTGTGCT+AGG | - | chr1.1:78782587-78782606 | None:intergenic | 30.0% |
| ! | GAAAGTGCATTAAACTCAAT+TGG | - | chr1.1:78782305-78782324 | None:intergenic | 30.0% |
| ! | GTTTTCAACAGATCTTTCAT+GGG | - | chr1.1:78780970-78780989 | None:intergenic | 30.0% |
| !! | ATTTGGAGTTTGATCTTTTG+TGG | + | chr1.1:78782066-78782085 | MS.gene76256:CDS | 30.0% |
| !! | TCAATTGGTGTTAGCATATT+AGG | - | chr1.1:78782290-78782309 | None:intergenic | 30.0% |
| !!! | AGAATCGATCTACTTTTTCT+AGG | + | chr1.1:78781306-78781325 | MS.gene76256:CDS | 30.0% |
| !!! | ATAGTTTTAAGTCCTTATCG+TGG | + | chr1.1:78782888-78782907 | MS.gene76256:CDS | 30.0% |
| AAACCACAGTAGAATCTCTA+GGG | - | chr1.1:78781113-78781132 | None:intergenic | 35.0% | |
| AAACTATTCGCTCAAGTTTC+TGG | - | chr1.1:78782875-78782894 | None:intergenic | 35.0% | |
| AAATCACTTAAGATGTCCCA+GGG | - | chr1.1:78782050-78782069 | None:intergenic | 35.0% | |
| AACTATTCGCTCAAGTTTCT+GGG | - | chr1.1:78782874-78782893 | None:intergenic | 35.0% | |
| AAGGATGAACTCACTATCTT+TGG | - | chr1.1:78781606-78781625 | None:intergenic | 35.0% | |
| ACACATTCTTGTTCTTGTTC+AGG | + | chr1.1:78781953-78781972 | MS.gene76256:intron | 35.0% | |
| ACATATTCGTCGGATATAAC+TGG | - | chr1.1:78781792-78781811 | None:intergenic | 35.0% | |
| ACGTATGGATTTGCATTCAT+TGG | + | chr1.1:78782649-78782668 | MS.gene76256:intron | 35.0% | |
| ACTCCAATGAAGTGAGTTTA+AGG | - | chr1.1:78781707-78781726 | None:intergenic | 35.0% | |
| AGATGGAACTACTAGAAACT+GGG | + | chr1.1:78781073-78781092 | MS.gene76256:CDS | 35.0% | |
| ATCCCTACTCAGATCAAAAT+CGG | - | chr1.1:78781142-78781161 | None:intergenic | 35.0% | |
| CTTATGGGATGAAATACATG+TGG | - | chr1.1:78782526-78782545 | None:intergenic | 35.0% | |
| CTTATTAGGTGAAATCATGC+GGG | + | chr1.1:78782458-78782477 | MS.gene76256:intron | 35.0% | |
| GAACAGAATAAAGTCACAGT+TGG | - | chr1.1:78781457-78781476 | None:intergenic | 35.0% | |
| GCAAATGAGGAAAAGTTTGA+AGG | - | chr1.1:78782103-78782122 | None:intergenic | 35.0% | |
| GCAATTGGACATCTATTCAA+TGG | + | chr1.1:78781857-78781876 | MS.gene76256:CDS | 35.0% | |
| GTATCCAACAACACCAAAAA+GGG | + | chr1.1:78781657-78781676 | MS.gene76256:CDS | 35.0% | |
| TAAGGCAATCTAGTGAACAA+AGG | - | chr1.1:78781689-78781708 | None:intergenic | 35.0% | |
| TACGCCAAACATAAAATGGT+AGG | - | chr1.1:78782485-78782504 | None:intergenic | 35.0% | |
| TCAAGAGTTCAACTCTTCAT+TGG | + | chr1.1:78782368-78782387 | MS.gene76256:intron | 35.0% | |
| TCCAACGCTTAATCTCTTAT+GGG | - | chr1.1:78782541-78782560 | None:intergenic | 35.0% | |
| TTCATCCTTATGTCATCTTG+AGG | + | chr1.1:78781617-78781636 | MS.gene76256:CDS | 35.0% | |
| TTCCAACGCTTAATCTCTTA+TGG | - | chr1.1:78782542-78782561 | None:intergenic | 35.0% | |
| TTGCCTTAAACTCACTTCAT+TGG | + | chr1.1:78781701-78781720 | MS.gene76256:CDS | 35.0% | |
| ! | AATGGTTAGTCGTAATGTGT+TGG | + | chr1.1:78781875-78781894 | MS.gene76256:intron | 35.0% |
| ! | ACAAAGGTTTACACCCTTTT+TGG | - | chr1.1:78781673-78781692 | None:intergenic | 35.0% |
| ! | ATAAGTTTTGCGATTGCAAG+AGG | + | chr1.1:78781276-78781295 | MS.gene76256:CDS | 35.0% |
| ! | GGTTTTCAACAGATCTTTCA+TGG | - | chr1.1:78780971-78780990 | None:intergenic | 35.0% |
| ! | TACACTTGGAAGTACAAAAG+TGG | + | chr1.1:78781494-78781513 | MS.gene76256:CDS | 35.0% |
| !! | GATTTGGAAAGATAATGGAC+AGG | - | chr1.1:78782327-78782346 | None:intergenic | 35.0% |
| !! | TAAAGTCACAGTTGGTGAAA+TGG | - | chr1.1:78781449-78781468 | None:intergenic | 35.0% |
| !! | TATAGGGGTGTTGATGTAAA+AGG | - | chr1.1:78781751-78781770 | None:intergenic | 35.0% |
| !!! | GGTTGAGTCATTTTTAGCAA+AGG | - | chr1.1:78781984-78782003 | None:intergenic | 35.0% |
| !!! | TACCGATTTTGATCTGAGTA+GGG | + | chr1.1:78781137-78781156 | MS.gene76256:CDS | 35.0% |
| !!! | TCGATCTACTTTTTCTAGGA+AGG | + | chr1.1:78781310-78781329 | MS.gene76256:CDS | 35.0% |
| !!! | TTACCGATTTTGATCTGAGT+AGG | + | chr1.1:78781136-78781155 | MS.gene76256:CDS | 35.0% |
| AAACCAGCATACTGTCTAGA+AGG | + | chr1.1:78780986-78781005 | MS.gene76256:CDS | 40.0% | |
| AACTTGTAACGTTTGGGTGA+AGG | - | chr1.1:78781354-78781373 | None:intergenic | 40.0% | |
| ATGTAAAAGGTCTCCAAACC+AGG | - | chr1.1:78781738-78781757 | None:intergenic | 40.0% | |
| ATTGAATTAGGAGGCTGTGT+TGG | + | chr1.1:78782804-78782823 | MS.gene76256:CDS | 40.0% | |
| CAAACCACAGTAGAATCTCT+AGG | - | chr1.1:78781114-78781133 | None:intergenic | 40.0% | |
| CAAATCACTTAAGATGTCCC+AGG | - | chr1.1:78782051-78782070 | None:intergenic | 40.0% | |
| CGTATCCAACAACACCAAAA+AGG | + | chr1.1:78781656-78781675 | MS.gene76256:CDS | 40.0% | |
| CTGGGACATCTTAAGTGATT+TGG | + | chr1.1:78782049-78782068 | MS.gene76256:CDS | 40.0% | |
| GAGATGGAACTACTAGAAAC+TGG | + | chr1.1:78781072-78781091 | MS.gene76256:CDS | 40.0% | |
| GATGGAACTACTAGAAACTG+GGG | + | chr1.1:78781074-78781093 | MS.gene76256:CDS | 40.0% | |
| TCCCATAAGAGATTAAGCGT+TGG | + | chr1.1:78782537-78782556 | MS.gene76256:intron | 40.0% | |
| ! | AGGATTAGTGAAAAGCTTCG+AGG | + | chr1.1:78782972-78782991 | MS.gene76256:CDS | 40.0% |
| ! | CTCACTTCATTGGAGTACTT+TGG | + | chr1.1:78781711-78781730 | MS.gene76256:CDS | 40.0% |
| ! | GGGTCCTACCATTTTATGTT+TGG | + | chr1.1:78782478-78782497 | MS.gene76256:intron | 40.0% |
| !!! | TACACCCTTTTTGGTGTTGT+TGG | - | chr1.1:78781664-78781683 | None:intergenic | 40.0% |
| ACTCCCTAGAGATTCTACTG+TGG | + | chr1.1:78781107-78781126 | MS.gene76256:CDS | 45.0% | |
| CAATGTTCTTGGAAGCGAGA+TGG | + | chr1.1:78781056-78781075 | MS.gene76256:CDS | 45.0% | |
| CTTCGAGGTGAAGATGTAGT+TGG | + | chr1.1:78782987-78783006 | MS.gene76256:CDS | 45.0% | |
| TCTCGCTTCCAAGAACATTG+TGG | - | chr1.1:78781056-78781075 | None:intergenic | 45.0% | |
| TTATCGTGGAGAACACGACT+CGG | + | chr1.1:78782902-78782921 | MS.gene76256:CDS | 45.0% | |
| ! | TCATTGGAGTACTTTGGTCC+TGG | + | chr1.1:78781717-78781736 | MS.gene76256:CDS | 45.0% |
| !! | ATAAATAAATATATAAAACA+TGG | - | chr1.1:78782164-78782183 | None:intergenic | 5.0% |
| !! | TAAATAAATATATAAAACAT+GGG | - | chr1.1:78782163-78782182 | None:intergenic | 5.0% |
| !! | TATATATTTATTTATTGTTA+TGG | + | chr1.1:78782169-78782188 | MS.gene76256:intron | 5.0% |
| CCACCTTCTAGACAGTATGC+TGG | - | chr1.1:78780992-78781011 | None:intergenic | 50.0% | |
| CCAGCATACTGTCTAGAAGG+TGG | + | chr1.1:78780989-78781008 | MS.gene76256:CDS | 50.0% | |
| CCTCCTGTGTGGTCTCAAAA+TGG | + | chr1.1:78782942-78782961 | MS.gene76256:CDS | 50.0% | |
| GAAGGACCGAGATGTGCATA+AGG | - | chr1.1:78781336-78781355 | None:intergenic | 50.0% | |
| GAGTCGTGTTCTCCACGATA+AGG | - | chr1.1:78782903-78782922 | None:intergenic | 50.0% | |
| GGAAATCTGATCCTCCTGTG+TGG | + | chr1.1:78782931-78782950 | MS.gene76256:CDS | 50.0% | |
| GGTCTCAAAATGGCTGTCGA+AGG | + | chr1.1:78782952-78782971 | MS.gene76256:CDS | 50.0% | |
| TACTGTCTAGAAGGTGGTGC+AGG | + | chr1.1:78780995-78781014 | MS.gene76256:CDS | 50.0% | |
| TAGAAGGTGGTGCAGGCTAT+GGG | + | chr1.1:78781002-78781021 | MS.gene76256:CDS | 50.0% | |
| ! | GGAAGGCCTTATGCACATCT+CGG | + | chr1.1:78781327-78781346 | MS.gene76256:CDS | 50.0% |
| ! | GGAGTACTTTGGTCCTGGTT+TGG | + | chr1.1:78781722-78781741 | MS.gene76256:CDS | 50.0% |
| ! | TAGGAGGCTGTGTTGGCAAT+TGG | + | chr1.1:78782811-78782830 | MS.gene76256:CDS | 50.0% |
| !!! | CAGCCATTTTGAGACCACAC+AGG | - | chr1.1:78782948-78782967 | None:intergenic | 50.0% |
| !!! | CCATTTTGAGACCACACAGG+AGG | - | chr1.1:78782945-78782964 | None:intergenic | 50.0% |
| CATCATACAGTGGTCGCCCT+GGG | + | chr1.1:78782031-78782050 | MS.gene76256:CDS | 55.0% | |
| CTAGAAGGTGGTGCAGGCTA+TGG | + | chr1.1:78781001-78781020 | MS.gene76256:CDS | 55.0% | |
| GGTGCAGGCTATGGGCTTTA+AGG | + | chr1.1:78781010-78781029 | MS.gene76256:CDS | 55.0% | |
| TCATCATACAGTGGTCGCCC+TGG | + | chr1.1:78782030-78782049 | MS.gene76256:CDS | 55.0% | |
| !! | GAGAACACGACTCGGTGGAT+TGG | + | chr1.1:78782910-78782929 | MS.gene76256:CDS | 55.0% |
| ! | TCGTGGAGAACACGACTCGG+TGG | + | chr1.1:78782905-78782924 | MS.gene76256:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78780910 | 78783034 | 78780910 | ID=MS.gene76256 |
| chr1.1 | mRNA | 78780910 | 78783034 | 78780910 | ID=MS.gene76256.t1;Parent=MS.gene76256 |
| chr1.1 | exon | 78780910 | 78781878 | 78780910 | ID=MS.gene76256.t1.exon1;Parent=MS.gene76256.t1 |
| chr1.1 | CDS | 78780910 | 78781878 | 78780910 | ID=cds.MS.gene76256.t1;Parent=MS.gene76256.t1 |
| chr1.1 | exon | 78781975 | 78782139 | 78781975 | ID=MS.gene76256.t1.exon2;Parent=MS.gene76256.t1 |
| chr1.1 | CDS | 78781975 | 78782139 | 78781975 | ID=cds.MS.gene76256.t1;Parent=MS.gene76256.t1 |
| chr1.1 | exon | 78782726 | 78783034 | 78782726 | ID=MS.gene76256.t1.exon3;Parent=MS.gene76256.t1 |
| chr1.1 | CDS | 78782726 | 78783034 | 78782726 | ID=cds.MS.gene76256.t1;Parent=MS.gene76256.t1 |
| Gene Sequence |
| Protein sequence |
