Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76416.t1 | XP_013446401.1 | 95.6 | 182 | 8 | 0 | 1 | 182 | 1 | 182 | 2.80E-93 | 351.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76416.t1 | Q9ZPW2 | 84.3 | 178 | 28 | 0 | 5 | 182 | 1 | 178 | 2.7e-84 | 312.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76416.t1 | I3SVT4 | 95.6 | 182 | 8 | 0 | 1 | 182 | 1 | 182 | 2.0e-93 | 351.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054473 | MS.gene76416 | 0.817683 | 2.90E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene76416 | 0.810245 | 1.27E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76416.t1 | MTR_8g077200 | 95.604 | 182 | 8 | 0 | 1 | 182 | 1 | 182 | 5.81e-120 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76416.t1 | AT2G18290 | 84.270 | 178 | 28 | 0 | 5 | 182 | 1 | 178 | 1.58e-107 | 306 |
Find 41 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAGACCTCCGTGAATT+AGG | 0.191054 | 8.1:+30515731 | MS.gene76416:CDS |
| GTGCGGCAGATCAAAGTTTA+TGG | 0.229668 | 8.1:+30517317 | MS.gene76416:CDS |
| TGGCTTTATTTATCATTATC+TGG | 0.234059 | 8.1:+30516627 | MS.gene76416:CDS |
| GGCACGAATGGAAATCTTAC+TGG | 0.333164 | 8.1:-30516134 | None:intergenic |
| AGAAAGAATGAGTTTAGAAA+TGG | 0.381364 | 8.1:+30515643 | None:intergenic |
| AAGAGAAGAAACGCCGTTGC+CGG | 0.388415 | 8.1:-30515789 | None:intergenic |
| ACGATAATCTCGAAACCTAT+TGG | 0.407885 | 8.1:+30515816 | MS.gene76416:CDS |
| ATGAAGACCTCCGTGAATTA+GGG | 0.409924 | 8.1:+30515732 | MS.gene76416:CDS |
| AAAAGTAAGTAACTGCCAAT+AGG | 0.447250 | 8.1:-30515831 | None:intergenic |
| CTTCATCTATAATCAAAACT+TGG | 0.456334 | 8.1:-30515715 | None:intergenic |
| GTAAGATTTCCATTCGTGCC+GGG | 0.477062 | 8.1:+30516137 | MS.gene76416:CDS |
| ATTTCCATTCGTGCCGGGGA+CGG | 0.485100 | 8.1:+30516142 | MS.gene76416:CDS |
| GTGGAACTTGTGAAACCAAC+TGG | 0.489917 | 8.1:+30516603 | MS.gene76416:CDS |
| TGCGGCAGATCAAAGTTTAT+GGG | 0.493929 | 8.1:+30517318 | MS.gene76416:CDS |
| AAAGCCGTCCCCGGCACGAA+TGG | 0.494256 | 8.1:-30516146 | None:intergenic |
| AGTGTTAGCTCCTGCAAAAC+CGG | 0.500985 | 8.1:+30515770 | MS.gene76416:CDS |
| TATAAGGAGACATACGGTCT+AGG | 0.506265 | 8.1:-30517341 | None:intergenic |
| AATTGAATGTTAACAAAATG+AGG | 0.506896 | 8.1:-30515947 | None:intergenic |
| GAGTATCCCTTCCATTGAGA+TGG | 0.518964 | 8.1:-30517292 | None:intergenic |
| AGCTCCTGCAAAACCGGCAA+CGG | 0.520016 | 8.1:+30515776 | MS.gene76416:CDS |
| CTAGTTAGTTGTGCTCTATG+TGG | 0.523130 | 8.1:+30516084 | MS.gene76416:intron |
| AGTAAGATTTCCATTCGTGC+CGG | 0.528088 | 8.1:+30516136 | MS.gene76416:CDS |
| GTGTTATCAAACCATCTCAA+TGG | 0.531782 | 8.1:+30517281 | MS.gene76416:CDS |
| GAGGTTGTGAAAGCCGTCCC+CGG | 0.545589 | 8.1:-30516155 | None:intergenic |
| TCATCAGAAGGTGAAGAAGA+AGG | 0.548262 | 8.1:+30515674 | MS.gene76416:CDS |
| TTTGCAGGAGCTAACACTCC+AGG | 0.549408 | 8.1:-30515765 | None:intergenic |
| CATTATCTGGACTTGATCCT+CGG | 0.551251 | 8.1:+30516640 | MS.gene76416:CDS |
| TATCAAACCATCTCAATGGA+AGG | 0.568621 | 8.1:+30517285 | MS.gene76416:CDS |
| GATAAATAAAGCCAACCAGT+TGG | 0.571646 | 8.1:-30516618 | None:intergenic |
| ATCAAACCATCTCAATGGAA+GGG | 0.580370 | 8.1:+30517286 | MS.gene76416:CDS |
| TAAGATTTCCATTCGTGCCG+GGG | 0.583092 | 8.1:+30516138 | MS.gene76416:CDS |
| AACTTGTGAAACCAACTGGT+TGG | 0.587182 | 8.1:+30516607 | MS.gene76416:CDS |
| ATTGAGATGGTTTGATAACA+CGG | 0.592321 | 8.1:-30517279 | None:intergenic |
| GCACGAATGGAAATCTTACT+GGG | 0.596970 | 8.1:-30516133 | None:intergenic |
| AATGAGTTTAGAAATGGCAG+CGG | 0.627697 | 8.1:+30515649 | None:intergenic |
| GAAGAAGGAAAGCTAAGCGG+AGG | 0.641558 | 8.1:+30515689 | MS.gene76416:CDS |
| ATGGCAGCGGAATCATCAGA+AGG | 0.656350 | 8.1:+30515662 | MS.gene76416:CDS |
| GGACGGCTTTCACAACCTCA+AGG | 0.656391 | 8.1:+30516159 | MS.gene76416:CDS |
| ATGGAAGGGATACTCATGTG+CGG | 0.716826 | 8.1:+30517300 | MS.gene76416:CDS |
| GAAGAAGAAGGAAAGCTAAG+CGG | 0.716861 | 8.1:+30515686 | MS.gene76416:CDS |
| GCAGGAGCTAACACTCCAGG+CGG | 0.762817 | 8.1:-30515762 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTGAATTTTAATTTTT+AGG | + | chr8.1:30516569-30516588 | MS.gene76416:intron | 10.0% |
| !!! | TCTTATTATGTTTTTTTAAT+TGG | + | chr8.1:30516044-30516063 | MS.gene76416:intron | 10.0% |
| !!! | TGTGTAATTTTTTTTTTTTT+TGG | + | chr8.1:30518729-30518748 | MS.gene76416:intron | 10.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr8.1:30518464-30518483 | MS.gene76416:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr8.1:30518483-30518464 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr8.1:30518465-30518484 | MS.gene76416:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr8.1:30518484-30518465 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr8.1:30518273-30518292 | MS.gene76416:intron | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr8.1:30518392-30518373 | None:intergenic | 15.0% |
| !!! | TGTTCTGAAATAATAAAAAT+AGG | - | chr8.1:30517850-30517869 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTAATTGGAAAAT+TGG | + | chr8.1:30516052-30516071 | MS.gene76416:intron | 15.0% |
| !!! | TTTATAATAGGATTAGTTAT+GGG | + | chr8.1:30517804-30517823 | MS.gene76416:intron | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr8.1:30518403-30518422 | MS.gene76416:intron | 20.0% |
| !! | AAATGGAACTTATTGTTTAT+TGG | - | chr8.1:30517107-30517126 | None:intergenic | 20.0% |
| !! | AATGGAACTTATTGTTTATT+GGG | - | chr8.1:30517106-30517125 | None:intergenic | 20.0% |
| !! | AATTGAATGTTAACAAAATG+AGG | - | chr8.1:30515950-30515969 | None:intergenic | 20.0% |
| !! | AATTTGAAAAAAATACCTTG+AGG | - | chr8.1:30516177-30516196 | None:intergenic | 20.0% |
| !! | ATAAATTAGCAAGAAACAAA+GGG | - | chr8.1:30517761-30517780 | None:intergenic | 20.0% |
| !! | GTTTATAATAGGATTAGATA+TGG | + | chr8.1:30517735-30517754 | MS.gene76416:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr8.1:30518402-30518421 | MS.gene76416:intron | 20.0% |
| !! | TAATGGTAGATAAATGAAAA+TGG | - | chr8.1:30517124-30517143 | None:intergenic | 20.0% |
| !! | TATAAATTAGCAAGAAACAA+AGG | - | chr8.1:30517762-30517781 | None:intergenic | 20.0% |
| !! | TTGATTTATTCATCAACAAT+TGG | - | chr8.1:30517006-30517025 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr8.1:30518308-30518327 | MS.gene76416:intron | 20.0% |
| !!! | ATAAGATGAAATTTTATGGA+AGG | + | chr8.1:30517496-30517515 | MS.gene76416:intron | 20.0% |
| !!! | ATATATTTTTACCACTTGAA+TGG | - | chr8.1:30517606-30517625 | None:intergenic | 20.0% |
| !!! | CATATAAGCTTTAATTTACA+AGG | - | chr8.1:30518879-30518898 | None:intergenic | 20.0% |
| !!! | GAAATTGGTTAAAAAGTATA+AGG | - | chr8.1:30517360-30517379 | None:intergenic | 20.0% |
| !!! | GTAATGCATTTTAAGTAATA+GGG | + | chr8.1:30517977-30517996 | MS.gene76416:intron | 20.0% |
| !!! | GTTTATAATAGGATTAGTTA+TGG | + | chr8.1:30517803-30517822 | MS.gene76416:intron | 20.0% |
| !!! | TACGATAAGATGAAATTTTA+TGG | + | chr8.1:30517492-30517511 | MS.gene76416:intron | 20.0% |
| !!! | TGTGCTAATTTTATTGATAT+TGG | + | chr8.1:30516516-30516535 | MS.gene76416:intron | 20.0% |
| !!! | TTAGTTTAGAATAATTTGAC+AGG | + | chr8.1:30518812-30518831 | MS.gene76416:intron | 20.0% |
| ! | AAACCTCAAGTTATATTACA+TGG | - | chr8.1:30517172-30517191 | None:intergenic | 25.0% |
| ! | AAATTGAATGAATTGAGTAG+CGG | - | chr8.1:30515897-30515916 | None:intergenic | 25.0% |
| ! | AACCAATGTAATCTAATAAC+TGG | + | chr8.1:30516809-30516828 | MS.gene76416:intron | 25.0% |
| ! | AACTTATTGTTTATTGGGTT+TGG | - | chr8.1:30517101-30517120 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr8.1:30518436-30518455 | MS.gene76416:intron | 25.0% |
| ! | CTTCATCTATAATCAAAACT+TGG | - | chr8.1:30515718-30515737 | None:intergenic | 25.0% |
| ! | TCTCTTGAAGTAAATTGAAA+TGG | - | chr8.1:30517457-30517476 | None:intergenic | 25.0% |
| ! | TTACCATGTAATATAACTTG+AGG | + | chr8.1:30517166-30517185 | MS.gene76416:intron | 25.0% |
| ! | TTTCAGAACAAAAAGATATG+TGG | + | chr8.1:30517860-30517879 | MS.gene76416:intron | 25.0% |
| !! | AAAAAGTATAAGGAGACATA+CGG | - | chr8.1:30517350-30517369 | None:intergenic | 25.0% |
| !! | ATCTGCAATTGGTTTATAAT+AGG | + | chr8.1:30517792-30517811 | MS.gene76416:intron | 25.0% |
| !! | TGAGTTTAGAATAATTTGAC+AGG | + | chr8.1:30518764-30518783 | MS.gene76416:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr8.1:30518113-30518132 | None:intergenic | 25.0% |
| !!! | CTTGTAATCTGACTTTTTTT+TGG | - | chr8.1:30515973-30515992 | None:intergenic | 25.0% |
| !!! | GGTAATGCATTTTAAGTAAT+AGG | + | chr8.1:30517976-30517995 | MS.gene76416:intron | 25.0% |
| !!! | GTATTTTTCGGTTATGTTTT+TGG | + | chr8.1:30516666-30516685 | MS.gene76416:intron | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr8.1:30518114-30518133 | None:intergenic | 25.0% |
| !!! | TGGCTTTATTTATCATTATC+TGG | + | chr8.1:30516627-30516646 | MS.gene76416:CDS | 25.0% |
| !!! | TTTTGATTTTCTCACTTTAG+AGG | + | chr8.1:30517073-30517092 | MS.gene76416:intron | 25.0% |
| AAAAATTGCTGCATGGATAA+AGG | - | chr8.1:30517931-30517950 | None:intergenic | 30.0% | |
| AAAAGTAAGTAACTGCCAAT+AGG | - | chr8.1:30515834-30515853 | None:intergenic | 30.0% | |
| AAACATGTCATCAGGAAATA+TGG | + | chr8.1:30517649-30517668 | MS.gene76416:intron | 30.0% | |
| AGTAATAACTCACCATCAAA+TGG | + | chr8.1:30518541-30518560 | MS.gene76416:intron | 30.0% | |
| AGTTTGAAAAAAAGACCTTG+AGG | - | chr8.1:30516383-30516402 | None:intergenic | 30.0% | |
| ATCAACAATTGGTATTACTC+AGG | - | chr8.1:30516995-30517014 | None:intergenic | 30.0% | |
| ATTTCATCTTATCGTAGAGT+AGG | - | chr8.1:30517488-30517507 | None:intergenic | 30.0% | |
| CAACTGTATGTCTAAGAAAT+TGG | - | chr8.1:30517375-30517394 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr8.1:30518176-30518195 | MS.gene76416:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr8.1:30518435-30518454 | MS.gene76416:intron | 30.0% | |
| GAATGTTAATGAACGTAGTT+GGG | - | chr8.1:30518912-30518931 | None:intergenic | 30.0% | |
| GACCAGTTATTAGATTACAT+TGG | - | chr8.1:30516814-30516833 | None:intergenic | 30.0% | |
| GATAAAGGAAAAAAGATAGC+AGG | - | chr8.1:30517916-30517935 | None:intergenic | 30.0% | |
| GGATGGATATCAATAAAACT+AGG | - | chr8.1:30516338-30516357 | None:intergenic | 30.0% | |
| TAAGAAAGAATCAAGAAGCA+CGG | - | chr8.1:30517149-30517168 | None:intergenic | 30.0% | |
| TACACAAATCTGACTCATAA+TGG | - | chr8.1:30518715-30518734 | None:intergenic | 30.0% | |
| TATGACCAAACACAATTTCA+AGG | - | chr8.1:30516925-30516944 | None:intergenic | 30.0% | |
| TGTAATCCTCAAACTATTAC+CGG | - | chr8.1:30516230-30516249 | None:intergenic | 30.0% | |
| TTAAAGCTTATATGCTTGCT+TGG | + | chr8.1:30518885-30518904 | MS.gene76416:intron | 30.0% | |
| TTAAATGTAATCACGTGTGT+CGG | + | chr8.1:30516463-30516482 | MS.gene76416:intron | 30.0% | |
| TTTGTTGGACAGAAAATCAA+TGG | - | chr8.1:30517029-30517048 | None:intergenic | 30.0% | |
| ! | AGTTTGTTTAGATCTGCAAT+TGG | + | chr8.1:30517781-30517800 | MS.gene76416:intron | 30.0% |
| ! | ATTAAAAGTGTGTCTGATAG+TGG | - | chr8.1:30516302-30516321 | None:intergenic | 30.0% |
| ! | ATTGAGATGGTTTGATAACA+CGG | - | chr8.1:30517282-30517301 | None:intergenic | 30.0% |
| ! | GAAATCAAATAATGACTTGC+AGG | - | chr8.1:30516770-30516789 | None:intergenic | 30.0% |
| ! | TAAATTGACATGAGAGTATG+TGG | + | chr8.1:30516410-30516429 | MS.gene76416:intron | 30.0% |
| ! | TGATGGTGAGTTATTACTTA+GGG | - | chr8.1:30518539-30518558 | None:intergenic | 30.0% |
| ! | TTTGCAAGTGGGTTTATAAT+AGG | + | chr8.1:30517724-30517743 | MS.gene76416:intron | 30.0% |
| !! | AACTTCTAAGATCCATTTGA+TGG | - | chr8.1:30518556-30518575 | None:intergenic | 30.0% |
| !! | ATGATCGGTGTTTATGTTTT+CGG | - | chr8.1:30518599-30518618 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr8.1:30518496-30518515 | MS.gene76416:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr8.1:30518515-30518496 | None:intergenic | 30.0% |
| !! | TCATCATTCTTAGCTTTTCT+GGG | + | chr8.1:30518641-30518660 | MS.gene76416:intron | 30.0% |
| !! | TCTTTTAATTCTTGCTCCTT+GGG | + | chr8.1:30516888-30516907 | MS.gene76416:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr8.1:30518495-30518514 | MS.gene76416:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr8.1:30518514-30518495 | None:intergenic | 30.0% |
| !! | TTCATCATTCTTAGCTTTTC+TGG | + | chr8.1:30518640-30518659 | MS.gene76416:intron | 30.0% |
| !! | TTCTTTTAATTCTTGCTCCT+TGG | + | chr8.1:30516887-30516906 | MS.gene76416:intron | 30.0% |
| !! | TTGATGGTGAGTTATTACTT+AGG | - | chr8.1:30518540-30518559 | None:intergenic | 30.0% |
| !! | TTTTTAGGAGATTAAAGCTG+TGG | + | chr8.1:30516584-30516603 | MS.gene76416:intron | 30.0% |
| !!! | GTTTTTGTTTTCAGATCTGA+TGG | + | chr8.1:30515917-30515936 | MS.gene76416:intron | 30.0% |
| !!! | TTTCGGTTATGTTTTTGGTT+TGG | + | chr8.1:30516671-30516690 | MS.gene76416:intron | 30.0% |
| AAGTAGGGACTAAACTTACA+AGG | + | chr8.1:30518480-30518499 | MS.gene76416:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr8.1:30518499-30518480 | None:intergenic | 35.0% | |
| AATAATTTGACAGGTCGAGT+TGG | + | chr8.1:30518773-30518792 | MS.gene76416:intron | 35.0% | |
| ACGATAATCTCGAAACCTAT+TGG | + | chr8.1:30515816-30515835 | MS.gene76416:CDS | 35.0% | |
| AGTTTGGTTAGATTTGCAAG+TGG | + | chr8.1:30517712-30517731 | MS.gene76416:intron | 35.0% | |
| ATCAAACCATCTCAATGGAA+GGG | + | chr8.1:30517286-30517305 | MS.gene76416:CDS | 35.0% | |
| ATCAGCAAGCAATATGCAAA+CGG | - | chr8.1:30517686-30517705 | None:intergenic | 35.0% | |
| CAGACAACAAGTCTATATCT+AGG | + | chr8.1:30517955-30517974 | MS.gene76416:intron | 35.0% | |
| CTGGAAAAAAAATTGCTGCA+TGG | - | chr8.1:30517938-30517957 | None:intergenic | 35.0% | |
| GACAAATGTTTCACTGCAAT+TGG | - | chr8.1:30517237-30517256 | None:intergenic | 35.0% | |
| GATAAATAAAGCCAACCAGT+TGG | - | chr8.1:30516621-30516640 | None:intergenic | 35.0% | |
| GGAATGTTAATGAACGTAGT+TGG | - | chr8.1:30518913-30518932 | None:intergenic | 35.0% | |
| GGTTTGACTGATGATCAATT+TGG | + | chr8.1:30516537-30516556 | MS.gene76416:intron | 35.0% | |
| GTCTGTCTGTGATTTAATAG+CGG | - | chr8.1:30516200-30516219 | None:intergenic | 35.0% | |
| GTGTTATCAAACCATCTCAA+TGG | + | chr8.1:30517281-30517300 | MS.gene76416:CDS | 35.0% | |
| GTTCATCAAAACATGTCATC+AGG | + | chr8.1:30517641-30517660 | MS.gene76416:intron | 35.0% | |
| GTTTGGTTAGATTTGCAAGT+GGG | + | chr8.1:30517713-30517732 | MS.gene76416:intron | 35.0% | |
| TAACCGAAAAATACTTACCG+AGG | - | chr8.1:30516660-30516679 | None:intergenic | 35.0% | |
| TAGCAACACTCTTGTATGAT+CGG | - | chr8.1:30518614-30518633 | None:intergenic | 35.0% | |
| TATCAAACCATCTCAATGGA+AGG | + | chr8.1:30517285-30517304 | MS.gene76416:CDS | 35.0% | |
| TCTCTGATTTAACACTAGAC+TGG | - | chr8.1:30517533-30517552 | None:intergenic | 35.0% | |
| TGTGTCCTTGAAATTGTGTT+TGG | + | chr8.1:30516917-30516936 | MS.gene76416:intron | 35.0% | |
| TTATTGATATCCATCCGTGT+CGG | + | chr8.1:30516342-30516361 | MS.gene76416:intron | 35.0% | |
| TTCTGTCCAACAAATCATGT+GGG | + | chr8.1:30517035-30517054 | MS.gene76416:intron | 35.0% | |
| TTTCTGTCCAACAAATCATG+TGG | + | chr8.1:30517034-30517053 | MS.gene76416:intron | 35.0% | |
| ! | ATTTTTACCACTTGAATGGC+TGG | - | chr8.1:30517602-30517621 | None:intergenic | 35.0% |
| ! | CACTGATTGATTATATCGTG+CGG | + | chr8.1:30517561-30517580 | MS.gene76416:intron | 35.0% |
| ! | GATCCTCGGTAAGTATTTTT+CGG | + | chr8.1:30516654-30516673 | MS.gene76416:intron | 35.0% |
| ! | GTTGATATTAAAAGCGTGTC+TGG | - | chr8.1:30516492-30516511 | None:intergenic | 35.0% |
| ! | TAAACACCCACATGATTTGT+TGG | - | chr8.1:30517044-30517063 | None:intergenic | 35.0% |
| !! | CTAGATATAGACTTGTTGTC+TGG | - | chr8.1:30517957-30517976 | None:intergenic | 35.0% |
| AACTTGTGAAACCAACTGGT+TGG | + | chr8.1:30516607-30516626 | MS.gene76416:CDS | 40.0% | |
| AGGTTACACTCTCACTTTAG+AGG | - | chr8.1:30516975-30516994 | None:intergenic | 40.0% | |
| AGTAAGATTTCCATTCGTGC+CGG | + | chr8.1:30516136-30516155 | MS.gene76416:CDS | 40.0% | |
| ATGAAGACCTCCGTGAATTA+GGG | + | chr8.1:30515732-30515751 | MS.gene76416:CDS | 40.0% | |
| CATTATCTGGACTTGATCCT+CGG | + | chr8.1:30516640-30516659 | MS.gene76416:CDS | 40.0% | |
| CTAGTTAGTTGTGCTCTATG+TGG | + | chr8.1:30516084-30516103 | MS.gene76416:intron | 40.0% | |
| GAAGAAGAAGGAAAGCTAAG+CGG | + | chr8.1:30515686-30515705 | MS.gene76416:CDS | 40.0% | |
| GCACGAATGGAAATCTTACT+GGG | - | chr8.1:30516136-30516155 | None:intergenic | 40.0% | |
| GTAAATTGAAATGGCTGCTG+TGG | - | chr8.1:30517448-30517467 | None:intergenic | 40.0% | |
| TAGACACCGGTAATAGTTTG+AGG | + | chr8.1:30516221-30516240 | MS.gene76416:intron | 40.0% | |
| TATAAGGAGACATACGGTCT+AGG | - | chr8.1:30517344-30517363 | None:intergenic | 40.0% | |
| TCATCAGAAGGTGAAGAAGA+AGG | + | chr8.1:30515674-30515693 | MS.gene76416:CDS | 40.0% | |
| TGCGGCAGATCAAAGTTTAT+GGG | + | chr8.1:30517318-30517337 | MS.gene76416:CDS | 40.0% | |
| ! | AATCAAGAAGCACGGTCTAA+TGG | - | chr8.1:30517141-30517160 | None:intergenic | 40.0% |
| ! | GCTTGCTGATACTTCTAGTT+TGG | + | chr8.1:30517696-30517715 | MS.gene76416:intron | 40.0% |
| ! | TTGCAGGTTAGTTCAATGCA+CGG | - | chr8.1:30516754-30516773 | None:intergenic | 40.0% |
| !! | TAGCTTTGGACATAGTGAGA+AGG | - | chr8.1:30516723-30516742 | None:intergenic | 40.0% |
| !! | TCACTGCAATTGGTGATGAA+AGG | - | chr8.1:30517227-30517246 | None:intergenic | 40.0% |
| !!! | CGGCTTTTTTCCCTAATTCA+CGG | - | chr8.1:30515745-30515764 | None:intergenic | 40.0% |
| !!! | CTTTTTTCCCTAATTCACGG+AGG | - | chr8.1:30515742-30515761 | None:intergenic | 40.0% |
| AACCAAACCAGCCATTCAAG+TGG | + | chr8.1:30517592-30517611 | MS.gene76416:intron | 45.0% | |
| AATTAGGGAAAAAAGCCGCC+TGG | + | chr8.1:30515747-30515766 | MS.gene76416:CDS | 45.0% | |
| ACACCAGTAATCGTGTGTGT+TGG | + | chr8.1:30516273-30516292 | MS.gene76416:intron | 45.0% | |
| AGTGTTAGCTCCTGCAAAAC+CGG | + | chr8.1:30515770-30515789 | MS.gene76416:CDS | 45.0% | |
| ATGGAAGGGATACTCATGTG+CGG | + | chr8.1:30517300-30517319 | MS.gene76416:CDS | 45.0% | |
| CACCAGTAATCGTGTGTGTT+GGG | + | chr8.1:30516274-30516293 | MS.gene76416:intron | 45.0% | |
| CATGTAAGCTCTTCCCAAAG+TGG | + | chr8.1:30518672-30518691 | MS.gene76416:intron | 45.0% | |
| CTAAAACATACCCCTGTTGC+AGG | + | chr8.1:30517413-30517432 | MS.gene76416:intron | 45.0% | |
| GAGTATCCCTTCCATTGAGA+TGG | - | chr8.1:30517295-30517314 | None:intergenic | 45.0% | |
| GATGAAGACCTCCGTGAATT+AGG | + | chr8.1:30515731-30515750 | MS.gene76416:CDS | 45.0% | |
| GGCACGAATGGAAATCTTAC+TGG | - | chr8.1:30516137-30516156 | None:intergenic | 45.0% | |
| GTAAGATTTCCATTCGTGCC+GGG | + | chr8.1:30516137-30516156 | MS.gene76416:CDS | 45.0% | |
| GTGCGGCAGATCAAAGTTTA+TGG | + | chr8.1:30517317-30517336 | MS.gene76416:CDS | 45.0% | |
| GTGGAACTTGTGAAACCAAC+TGG | + | chr8.1:30516603-30516622 | MS.gene76416:CDS | 45.0% | |
| TAAGATTTCCATTCGTGCCG+GGG | + | chr8.1:30516138-30516157 | MS.gene76416:CDS | 45.0% | |
| TACCCAACACACACGATTAC+TGG | - | chr8.1:30516279-30516298 | None:intergenic | 45.0% | |
| TATGGGATCTGCATTCTCTG+AGG | + | chr8.1:30517821-30517840 | MS.gene76416:intron | 45.0% | |
| TCACAGACAGACATAGACAC+CGG | + | chr8.1:30516208-30516227 | MS.gene76416:intron | 45.0% | |
| TGAAATGGCTGCTGTGGAAT+GGG | - | chr8.1:30517442-30517461 | None:intergenic | 45.0% | |
| TGATGGCTTTCATGACCTCA+AGG | + | chr8.1:30516365-30516384 | MS.gene76416:intron | 45.0% | |
| TTGAAATGGCTGCTGTGGAA+TGG | - | chr8.1:30517443-30517462 | None:intergenic | 45.0% | |
| ! | GCACGGAAAATTGCTAGCTT+TGG | - | chr8.1:30516737-30516756 | None:intergenic | 45.0% |
| ! | TACCACTTGAATGGCTGGTT+TGG | - | chr8.1:30517597-30517616 | None:intergenic | 45.0% |
| !! | AAATTCTAGAGCCGCCACTT+TGG | - | chr8.1:30518689-30518708 | None:intergenic | 45.0% |
| !! | AATTCTAGAGCCGCCACTTT+GGG | - | chr8.1:30518688-30518707 | None:intergenic | 45.0% |
| !! | CTTGAATGGCTGGTTTGGTT+TGG | - | chr8.1:30517592-30517611 | None:intergenic | 45.0% |
| !! | AAAAATAAAAAAAATGAAAT+TGG | - | chr8.1:30516016-30516035 | None:intergenic | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr8.1:30518081-30518100 | None:intergenic | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr8.1:30518080-30518099 | None:intergenic | 5.0% |
| AAGAGAAGAAACGCCGTTGC+CGG | - | chr8.1:30515792-30515811 | None:intergenic | 50.0% | |
| ATGGCAGCGGAATCATCAGA+AGG | + | chr8.1:30515662-30515681 | MS.gene76416:CDS | 50.0% | |
| CAAGGACACAACACAACCCA+AGG | - | chr8.1:30516907-30516926 | None:intergenic | 50.0% | |
| CATGAAAGCCATCACCGACA+CGG | - | chr8.1:30516359-30516378 | None:intergenic | 50.0% | |
| GAAATGGCTGCTGTGGAATG+GGG | - | chr8.1:30517441-30517460 | None:intergenic | 50.0% | |
| GAAGAAGGAAAGCTAAGCGG+AGG | + | chr8.1:30515689-30515708 | MS.gene76416:CDS | 50.0% | |
| GTAAGCTCTTCCCAAAGTGG+CGG | + | chr8.1:30518675-30518694 | MS.gene76416:intron | 50.0% | |
| GTGCATTTGCACGACTGCAA+GGG | - | chr8.1:30518935-30518954 | None:intergenic | 50.0% | |
| TGCATTTGCACGACTGCAAG+GGG | - | chr8.1:30518934-30518953 | None:intergenic | 50.0% | |
| TTTGCAGGAGCTAACACTCC+AGG | - | chr8.1:30515768-30515787 | None:intergenic | 50.0% | |
| ! | ATATCCATCCGTGTCGGTGA+TGG | + | chr8.1:30516348-30516367 | MS.gene76416:intron | 50.0% |
| AAAGCCATCACCGACACGGA+TGG | - | chr8.1:30516355-30516374 | None:intergenic | 55.0% | |
| AGCTCCTGCAAAACCGGCAA+CGG | + | chr8.1:30515776-30515795 | MS.gene76416:CDS | 55.0% | |
| ATTTCCATTCGTGCCGGGGA+CGG | + | chr8.1:30516142-30516161 | MS.gene76416:CDS | 55.0% | |
| CGTGCATTTGCACGACTGCA+AGG | - | chr8.1:30518936-30518955 | None:intergenic | 55.0% | |
| GAATGGGGTTCCTGCAACAG+GGG | - | chr8.1:30517426-30517445 | None:intergenic | 55.0% | |
| GGAATGGGGTTCCTGCAACA+GGG | - | chr8.1:30517427-30517446 | None:intergenic | 55.0% | |
| GGACGGCTTTCACAACCTCA+AGG | + | chr8.1:30516159-30516178 | MS.gene76416:CDS | 55.0% | |
| TGGAATGGGGTTCCTGCAAC+AGG | - | chr8.1:30517428-30517447 | None:intergenic | 55.0% | |
| !! | CAGGTCGAGTTGGTACTCTG+CGG | + | chr8.1:30518831-30518850 | MS.gene76416:intron | 55.0% |
| GAGGTTGTGAAAGCCGTCCC+CGG | - | chr8.1:30516158-30516177 | None:intergenic | 60.0% | |
| GCAGGAGCTAACACTCCAGG+CGG | - | chr8.1:30515765-30515784 | None:intergenic | 60.0% | |
| !! | GTCGAGTTGGTACTCTGCGG+AGG | + | chr8.1:30518834-30518853 | MS.gene76416:intron | 60.0% |
| !!! | AACGCCGTTGCCGGTTTTGC+AGG | - | chr8.1:30515783-30515802 | None:intergenic | 60.0% |
| AAAGCCGTCCCCGGCACGAA+TGG | - | chr8.1:30516149-30516168 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 30515650 | 30518992 | 30515650 | ID=MS.gene76416 |
| chr8.1 | mRNA | 30515650 | 30518992 | 30515650 | ID=MS.gene76416.t1;Parent=MS.gene76416 |
| chr8.1 | exon | 30515650 | 30515840 | 30515650 | ID=MS.gene76416.t1.exon1;Parent=MS.gene76416.t1 |
| chr8.1 | CDS | 30515650 | 30515840 | 30515650 | ID=cds.MS.gene76416.t1;Parent=MS.gene76416.t1 |
| chr8.1 | exon | 30515931 | 30515991 | 30515931 | ID=MS.gene76416.t1.exon2;Parent=MS.gene76416.t1 |
| chr8.1 | CDS | 30515931 | 30515991 | 30515931 | ID=cds.MS.gene76416.t1;Parent=MS.gene76416.t1 |
| chr8.1 | exon | 30516088 | 30516180 | 30516088 | ID=MS.gene76416.t1.exon3;Parent=MS.gene76416.t1 |
| chr8.1 | CDS | 30516088 | 30516180 | 30516088 | ID=cds.MS.gene76416.t1;Parent=MS.gene76416.t1 |
| chr8.1 | exon | 30516591 | 30516661 | 30516591 | ID=MS.gene76416.t1.exon4;Parent=MS.gene76416.t1 |
| chr8.1 | CDS | 30516591 | 30516661 | 30516591 | ID=cds.MS.gene76416.t1;Parent=MS.gene76416.t1 |
| chr8.1 | exon | 30517244 | 30517348 | 30517244 | ID=MS.gene76416.t1.exon5;Parent=MS.gene76416.t1 |
| chr8.1 | CDS | 30517244 | 30517348 | 30517244 | ID=cds.MS.gene76416.t1;Parent=MS.gene76416.t1 |
| chr8.1 | exon | 30518941 | 30518992 | 30518941 | ID=MS.gene76416.t1.exon6;Parent=MS.gene76416.t1 |
| chr8.1 | CDS | 30518941 | 30518992 | 30518941 | ID=cds.MS.gene76416.t1;Parent=MS.gene76416.t1 |
| Gene Sequence |
| Protein sequence |
