Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76505.t1 | XP_003597736.1 | 97.7 | 772 | 14 | 1 | 1 | 768 | 23 | 794 | 0.00E+00 | 1406.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76505.t1 | P46607 | 63.3 | 773 | 249 | 9 | 1 | 767 | 3 | 746 | 4.2e-245 | 849.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76505.t1 | G7IUR3 | 97.7 | 772 | 14 | 1 | 1 | 768 | 23 | 794 | 0.0e+00 | 1406.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene76505.t1 | TF | HB-HD-ZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051003 | MS.gene76505 | 0.801721 | 7.88E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76505.t1 | MTR_2g101720 | 97.668 | 772 | 14 | 1 | 1 | 768 | 23 | 794 | 0.0 | 1568 |
MS.gene76505.t1 | MTR_8g432540 | 43.446 | 801 | 373 | 15 | 12 | 766 | 43 | 809 | 0.0 | 644 |
MS.gene76505.t1 | MTR_2g088470 | 44.382 | 712 | 353 | 10 | 84 | 766 | 38 | 735 | 0.0 | 625 |
MS.gene76505.t1 | MTR_4g047800 | 42.933 | 750 | 376 | 13 | 44 | 766 | 8 | 732 | 0.0 | 620 |
MS.gene76505.t1 | MTR_7g076080 | 41.593 | 791 | 390 | 14 | 17 | 766 | 18 | 777 | 0.0 | 619 |
MS.gene76505.t1 | MTR_1g101280 | 42.593 | 702 | 349 | 13 | 111 | 763 | 54 | 750 | 0.0 | 578 |
MS.gene76505.t1 | MTR_6g477820 | 40.366 | 711 | 356 | 12 | 111 | 765 | 27 | 725 | 0.0 | 561 |
MS.gene76505.t1 | MTR_5g029320 | 37.388 | 781 | 401 | 16 | 60 | 763 | 9 | 778 | 1.93e-169 | 508 |
MS.gene76505.t1 | MTR_0198s0030 | 38.615 | 751 | 376 | 13 | 73 | 763 | 26 | 751 | 2.53e-167 | 501 |
MS.gene76505.t1 | MTR_5g005600 | 38.218 | 696 | 379 | 14 | 104 | 763 | 36 | 716 | 4.12e-155 | 469 |
MS.gene76505.t1 | MTR_7g427710 | 37.664 | 685 | 362 | 16 | 100 | 765 | 2 | 640 | 3.17e-152 | 458 |
MS.gene76505.t1 | MTR_2g030570 | 32.568 | 697 | 433 | 13 | 96 | 763 | 7 | 695 | 3.11e-119 | 375 |
MS.gene76505.t1 | MTR_2g030600 | 31.457 | 693 | 439 | 14 | 96 | 763 | 7 | 688 | 7.65e-109 | 347 |
MS.gene76505.t1 | MTR_2g030660 | 31.587 | 687 | 403 | 22 | 99 | 763 | 6 | 647 | 3.59e-94 | 307 |
MS.gene76505.t1 | MTR_7g427690 | 36.729 | 373 | 210 | 7 | 277 | 641 | 57 | 411 | 1.57e-84 | 276 |
MS.gene76505.t1 | MTR_2g083350 | 30.784 | 536 | 321 | 13 | 268 | 763 | 6 | 531 | 3.14e-75 | 254 |
MS.gene76505.t1 | MTR_2g083330 | 30.134 | 521 | 319 | 10 | 279 | 764 | 16 | 526 | 3.47e-70 | 240 |
MS.gene76505.t1 | MTR_7g427700 | 35.517 | 290 | 155 | 5 | 112 | 394 | 15 | 279 | 4.12e-50 | 182 |
MS.gene76505.t1 | MTR_7g427700 | 37.888 | 161 | 82 | 5 | 615 | 765 | 281 | 433 | 2.75e-22 | 100 |
MS.gene76505.t1 | MTR_0653s0020 | 35.638 | 188 | 102 | 5 | 460 | 645 | 3 | 173 | 8.38e-37 | 137 |
MS.gene76505.t1 | MTR_2g101740 | 75.281 | 89 | 7 | 1 | 680 | 768 | 1 | 74 | 1.15e-34 | 126 |
MS.gene76505.t1 | MTR_2g030690 | 31.741 | 293 | 174 | 10 | 481 | 763 | 1 | 277 | 1.61e-29 | 119 |
MS.gene76505.t1 | MTR_7g027265 | 44.030 | 134 | 73 | 1 | 101 | 234 | 5 | 136 | 1.66e-29 | 114 |
MS.gene76505.t1 | MTR_5g046040 | 38.922 | 167 | 92 | 4 | 111 | 274 | 31 | 190 | 1.33e-26 | 112 |
MS.gene76505.t1 | MTR_2g094520 | 24.808 | 520 | 308 | 17 | 116 | 614 | 23 | 480 | 7.40e-25 | 111 |
MS.gene76505.t1 | MTR_3g109800 | 21.350 | 726 | 409 | 25 | 116 | 757 | 20 | 667 | 4.13e-23 | 105 |
MS.gene76505.t1 | MTR_3g109800 | 21.350 | 726 | 409 | 25 | 116 | 757 | 20 | 667 | 4.31e-23 | 105 |
MS.gene76505.t1 | MTR_3g109800 | 21.245 | 739 | 420 | 25 | 103 | 757 | 7 | 667 | 6.13e-23 | 105 |
MS.gene76505.t1 | MTR_4g058970 | 23.119 | 545 | 316 | 18 | 100 | 614 | 12 | 483 | 5.05e-22 | 102 |
MS.gene76505.t1 | MTR_8g013980 | 22.159 | 528 | 315 | 17 | 116 | 614 | 15 | 475 | 2.85e-21 | 99.8 |
MS.gene76505.t1 | MTR_2g101190 | 21.852 | 540 | 328 | 19 | 102 | 614 | 5 | 477 | 3.32e-21 | 99.8 |
MS.gene76505.t1 | MTR_7g027605 | 43.956 | 91 | 50 | 1 | 365 | 455 | 2 | 91 | 4.69e-20 | 85.9 |
MS.gene76505.t1 | MTR_0653s0010 | 41.935 | 124 | 55 | 4 | 651 | 765 | 1 | 116 | 1.18e-18 | 82.8 |
MS.gene76505.t1 | MTR_2g101750 | 80.435 | 46 | 9 | 0 | 723 | 768 | 9 | 54 | 6.93e-18 | 78.6 |
MS.gene76505.t1 | MTR_6g027290 | 29.032 | 155 | 102 | 3 | 101 | 251 | 12 | 162 | 3.14e-16 | 77.8 |
MS.gene76505.t1 | MTR_2g451350 | 26.667 | 135 | 99 | 0 | 289 | 423 | 1 | 135 | 2.36e-14 | 71.2 |
MS.gene76505.t1 | MTR_7g103340 | 41.176 | 102 | 55 | 1 | 99 | 200 | 51 | 147 | 1.06e-13 | 71.6 |
MS.gene76505.t1 | MTR_1g105420 | 31.765 | 170 | 92 | 6 | 172 | 321 | 5 | 170 | 2.23e-13 | 70.5 |
MS.gene76505.t1 | MTR_2g030700 | 28.986 | 138 | 87 | 3 | 101 | 238 | 6 | 132 | 1.01e-12 | 67.0 |
MS.gene76505.t1 | MTR_2g101730 | 54.545 | 66 | 17 | 2 | 703 | 768 | 19 | 71 | 1.23e-12 | 63.9 |
MS.gene76505.t1 | MTR_2g030680 | 28.986 | 138 | 87 | 3 | 101 | 238 | 6 | 132 | 7.36e-12 | 64.7 |
MS.gene76505.t1 | MTR_1g054285 | 36.842 | 114 | 68 | 1 | 85 | 198 | 127 | 236 | 1.14e-11 | 67.0 |
MS.gene76505.t1 | MTR_4g100550 | 34.459 | 148 | 82 | 4 | 51 | 198 | 70 | 202 | 4.71e-11 | 64.7 |
MS.gene76505.t1 | MTR_6g011610 | 30.457 | 197 | 105 | 5 | 4 | 200 | 16 | 180 | 5.57e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76505.t1 | AT1G79840 | 62.565 | 772 | 256 | 10 | 1 | 767 | 3 | 746 | 0.0 | 964 |
MS.gene76505.t1 | AT1G79840 | 62.565 | 772 | 256 | 10 | 1 | 767 | 32 | 775 | 0.0 | 959 |
MS.gene76505.t1 | AT1G79840 | 64.723 | 703 | 228 | 7 | 70 | 767 | 1 | 688 | 0.0 | 929 |
MS.gene76505.t1 | AT1G79840 | 64.723 | 703 | 228 | 7 | 70 | 767 | 1 | 688 | 0.0 | 929 |
MS.gene76505.t1 | AT1G79840 | 62.597 | 647 | 209 | 10 | 1 | 642 | 3 | 621 | 0.0 | 801 |
MS.gene76505.t1 | AT4G04890 | 43.315 | 718 | 364 | 10 | 84 | 768 | 33 | 740 | 0.0 | 623 |
MS.gene76505.t1 | AT4G04890 | 43.315 | 718 | 364 | 10 | 84 | 768 | 33 | 740 | 0.0 | 623 |
MS.gene76505.t1 | AT4G21750 | 43.198 | 713 | 346 | 9 | 106 | 766 | 55 | 760 | 0.0 | 613 |
MS.gene76505.t1 | AT4G21750 | 43.198 | 713 | 346 | 9 | 106 | 766 | 55 | 760 | 0.0 | 613 |
MS.gene76505.t1 | AT4G21750 | 43.198 | 713 | 346 | 9 | 106 | 766 | 55 | 760 | 0.0 | 613 |
MS.gene76505.t1 | AT4G21750 | 43.198 | 713 | 346 | 9 | 106 | 766 | 55 | 760 | 0.0 | 613 |
MS.gene76505.t1 | AT4G00730 | 44.444 | 702 | 350 | 11 | 89 | 766 | 116 | 801 | 0.0 | 612 |
MS.gene76505.t1 | AT1G79840 | 60.417 | 528 | 176 | 10 | 1 | 523 | 3 | 502 | 0.0 | 610 |
MS.gene76505.t1 | AT1G05230 | 43.385 | 703 | 358 | 8 | 84 | 766 | 35 | 717 | 0.0 | 608 |
MS.gene76505.t1 | AT1G05230 | 43.262 | 705 | 358 | 8 | 84 | 766 | 35 | 719 | 0.0 | 607 |
MS.gene76505.t1 | AT1G05230 | 43.262 | 705 | 358 | 8 | 84 | 766 | 35 | 719 | 0.0 | 607 |
MS.gene76505.t1 | AT1G05230 | 43.262 | 705 | 358 | 8 | 84 | 766 | 35 | 719 | 0.0 | 607 |
MS.gene76505.t1 | AT1G05230 | 43.262 | 705 | 358 | 8 | 84 | 766 | 35 | 719 | 0.0 | 607 |
MS.gene76505.t1 | AT1G05230 | 43.262 | 705 | 358 | 8 | 84 | 766 | 35 | 719 | 0.0 | 607 |
MS.gene76505.t1 | AT1G05230 | 43.262 | 705 | 358 | 8 | 84 | 766 | 35 | 719 | 0.0 | 607 |
MS.gene76505.t1 | AT1G05230 | 43.262 | 705 | 358 | 8 | 84 | 766 | 35 | 719 | 0.0 | 607 |
MS.gene76505.t1 | AT1G05230 | 43.262 | 705 | 358 | 8 | 84 | 766 | 35 | 719 | 0.0 | 607 |
MS.gene76505.t1 | AT1G05230 | 43.262 | 705 | 358 | 8 | 84 | 766 | 35 | 719 | 0.0 | 607 |
MS.gene76505.t1 | AT1G05230 | 43.262 | 705 | 358 | 8 | 84 | 766 | 35 | 719 | 0.0 | 607 |
MS.gene76505.t1 | AT3G61150 | 42.547 | 738 | 341 | 12 | 92 | 766 | 89 | 806 | 0.0 | 596 |
MS.gene76505.t1 | AT1G05230 | 43.154 | 577 | 297 | 6 | 84 | 641 | 35 | 599 | 2.73e-168 | 499 |
MS.gene76505.t1 | AT5G52170 | 40.955 | 691 | 359 | 13 | 84 | 763 | 26 | 678 | 3.32e-167 | 498 |
MS.gene76505.t1 | AT5G52170 | 40.955 | 691 | 359 | 13 | 84 | 763 | 26 | 678 | 3.32e-167 | 498 |
MS.gene76505.t1 | AT5G52170 | 40.666 | 691 | 366 | 11 | 84 | 763 | 26 | 683 | 4.02e-166 | 496 |
MS.gene76505.t1 | AT1G73360 | 39.714 | 700 | 359 | 18 | 112 | 764 | 31 | 714 | 1.78e-165 | 495 |
MS.gene76505.t1 | AT1G17920 | 38.796 | 714 | 372 | 15 | 85 | 765 | 2 | 683 | 4.40e-164 | 491 |
MS.gene76505.t1 | AT1G17920 | 38.796 | 714 | 372 | 15 | 85 | 765 | 2 | 683 | 4.40e-164 | 491 |
MS.gene76505.t1 | AT2G32370 | 40.000 | 695 | 365 | 14 | 99 | 766 | 54 | 723 | 3.88e-162 | 487 |
MS.gene76505.t1 | AT5G46880 | 36.179 | 738 | 385 | 18 | 88 | 763 | 93 | 806 | 1.46e-148 | 455 |
MS.gene76505.t1 | AT5G46880 | 36.179 | 738 | 385 | 18 | 88 | 763 | 93 | 806 | 1.46e-148 | 455 |
MS.gene76505.t1 | AT5G46880 | 36.179 | 738 | 385 | 18 | 88 | 763 | 93 | 806 | 1.46e-148 | 455 |
MS.gene76505.t1 | AT4G17710 | 37.801 | 664 | 352 | 16 | 113 | 763 | 88 | 703 | 4.15e-134 | 414 |
MS.gene76505.t1 | AT5G17320 | 32.787 | 732 | 414 | 17 | 94 | 766 | 6 | 718 | 1.27e-126 | 395 |
MS.gene76505.t1 | AT3G03260 | 33.241 | 722 | 405 | 18 | 98 | 767 | 2 | 698 | 9.24e-125 | 389 |
MS.gene76505.t1 | AT4G00730 | 42.763 | 456 | 226 | 7 | 89 | 522 | 116 | 558 | 1.34e-120 | 374 |
MS.gene76505.t1 | AT4G25530 | 32.999 | 697 | 423 | 15 | 85 | 766 | 18 | 685 | 2.00e-119 | 375 |
MS.gene76505.t1 | AT1G34650 | 32.528 | 704 | 402 | 18 | 119 | 766 | 22 | 708 | 2.56e-107 | 344 |
MS.gene76505.t1 | AT3G03260 | 32.305 | 551 | 324 | 13 | 98 | 613 | 2 | 538 | 1.48e-90 | 295 |
MS.gene76505.t1 | AT5G07260 | 21.004 | 538 | 369 | 16 | 179 | 711 | 10 | 496 | 4.87e-29 | 122 |
MS.gene76505.t1 | AT5G07260 | 21.033 | 542 | 369 | 17 | 179 | 711 | 10 | 501 | 9.33e-29 | 122 |
MS.gene76505.t1 | AT4G32880 | 21.165 | 704 | 412 | 27 | 103 | 730 | 2 | 638 | 7.42e-25 | 111 |
MS.gene76505.t1 | AT5G60690 | 23.062 | 529 | 298 | 21 | 116 | 614 | 25 | 474 | 4.77e-21 | 99.4 |
MS.gene76505.t1 | AT1G30490 | 22.409 | 656 | 383 | 26 | 104 | 698 | 9 | 599 | 1.00e-20 | 98.2 |
MS.gene76505.t1 | AT2G34710 | 21.265 | 743 | 421 | 29 | 106 | 763 | 15 | 678 | 2.76e-18 | 90.5 |
MS.gene76505.t1 | AT4G26920 | 27.692 | 195 | 123 | 6 | 267 | 456 | 47 | 228 | 2.87e-15 | 79.7 |
MS.gene76505.t1 | AT3G60390 | 39.623 | 106 | 58 | 2 | 96 | 200 | 146 | 246 | 1.39e-11 | 67.0 |
MS.gene76505.t1 | AT4G16780 | 36.752 | 117 | 62 | 2 | 88 | 198 | 101 | 211 | 5.86e-11 | 64.7 |
Find 169 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACAGACTCCATTGTTAATT+TGG | 0.153641 | 2.3:+2403288 | None:intergenic |
CTCCAAGGCAAGTCAAATTT+TGG | 0.154977 | 2.3:-2408040 | MS.gene76505:CDS |
GTCAACAGTGGCCTAGCTTT+TGG | 0.171217 | 2.3:-2404365 | MS.gene76505:CDS |
TGATTTGGGTACGACGATTT+TGG | 0.178481 | 2.3:+2408015 | None:intergenic |
TTGGCTTTAAATAGGTAGTA+TGG | 0.217597 | 2.3:-2404442 | MS.gene76505:intron |
TTCAAATTCATCCATTGATT+TGG | 0.230510 | 2.3:+2409904 | None:intergenic |
GAGAAGCATTTGTAAGGATT+TGG | 0.247426 | 2.3:+2403317 | None:intergenic |
GGGGCAACAAGCCTTATTTA+TGG | 0.248716 | 2.3:+2407801 | None:intergenic |
ATTTAAATAATACCTTGATT+TGG | 0.259779 | 2.3:+2408000 | None:intergenic |
TGTGGTGGGGACCCCACAAT+TGG | 0.267327 | 2.3:+2407780 | None:intergenic |
AGAGAATATTAAAAGCTCTT+TGG | 0.271894 | 2.3:-2406910 | MS.gene76505:CDS |
CGGCATGGCGGTGCGGCGGC+GGG | 0.287501 | 2.3:-2410043 | MS.gene76505:CDS |
TTCAATTGTTTCTGATGGTT+TGG | 0.287727 | 2.3:-2403416 | MS.gene76505:CDS |
GTTTCCATGTTTAATATCTA+AGG | 0.290461 | 2.3:-2406447 | MS.gene76505:CDS |
TCGGCATGGCGGTGCGGCGG+CGG | 0.292792 | 2.3:-2410044 | MS.gene76505:CDS |
GTTGTCTTCTACTTTGTCTA+TGG | 0.298498 | 2.3:+2404712 | None:intergenic |
GGCATGGCGGTGCGGCGGCG+GGG | 0.303946 | 2.3:-2410042 | MS.gene76505:CDS |
GGGGAGGAAGGGAGTACAAT+AGG | 0.308975 | 2.3:-2409977 | MS.gene76505:CDS |
GTGGTGGGGACCCCACAATT+GGG | 0.315163 | 2.3:+2407781 | None:intergenic |
GAGAGGCTGAGAGCAGCTTT+AGG | 0.319197 | 2.3:-2406984 | MS.gene76505:CDS |
GAAGCTTCAATGGATCTCTT+TGG | 0.328107 | 2.3:+2406693 | None:intergenic |
TTTGTGCAGTTTCTTCTATA+TGG | 0.329813 | 2.3:-2403954 | MS.gene76505:CDS |
TTTAAATAATACCTTGATTT+GGG | 0.331757 | 2.3:+2408001 | None:intergenic |
CATAACCTCAGCTTTGAGTT+TGG | 0.338433 | 2.3:+2407705 | None:intergenic |
CTCACCAGTTGAATCCTTCA+TGG | 0.359314 | 2.3:+2404271 | None:intergenic |
TCCATTGATTTGGATTTAGT+TGG | 0.361488 | 2.3:+2409914 | None:intergenic |
ATTGCCTCTGTCTTGTCCTT+TGG | 0.362072 | 2.3:+2403723 | None:intergenic |
GCATGGCGGTGCGGCGGCGG+GGG | 0.367383 | 2.3:-2410041 | MS.gene76505:CDS |
GGTAGTATGGGTGGAGCATT+TGG | 0.373488 | 2.3:-2404429 | MS.gene76505:CDS |
GAAATTAGCAGCGAGTATTC+AGG | 0.374487 | 2.3:-2409938 | MS.gene76505:CDS |
TGGAGAGGGAAAGAAGTCTT+TGG | 0.377024 | 2.3:+2410505 | None:intergenic |
GAGGTGGAAGAAGGGGAGGA+AGG | 0.380425 | 2.3:-2409989 | MS.gene76505:CDS |
CCTACGAGAGACCATAAATA+AGG | 0.385213 | 2.3:-2407812 | MS.gene76505:CDS |
AAGAAATCAAACAAAACATT+AGG | 0.391068 | 2.3:+2403919 | None:intergenic |
ATAAGAACAAGAAGAAGAAA+AGG | 0.391486 | 2.3:-2409823 | MS.gene76505:CDS |
AACCAAAATTTGACTTGCCT+TGG | 0.392620 | 2.3:+2408038 | None:intergenic |
CATTGCACCATCTCTGTTTG+TGG | 0.393009 | 2.3:+2407762 | None:intergenic |
ACTAAGGTTACTAGTAAAAC+TGG | 0.395797 | 2.3:-2404042 | MS.gene76505:CDS |
CAAGAATGGTGCAGTGCAAC+TGG | 0.400659 | 2.3:-2406384 | MS.gene76505:intron |
AGTAATATGGAGGTGGAAGA+AGG | 0.401643 | 2.3:-2409998 | MS.gene76505:CDS |
AACAAAACATTAGGAGATAT+AGG | 0.411699 | 2.3:+2403928 | None:intergenic |
CAACAACTTAGCAAGCAATT+AGG | 0.414776 | 2.3:-2408068 | MS.gene76505:CDS |
AGAGGCTGAGAGCAGCTTTA+GGG | 0.415023 | 2.3:-2406983 | MS.gene76505:CDS |
TCTTTGGCTTTAGAAGTAGA+AGG | 0.415922 | 2.3:+2410521 | None:intergenic |
ACAAAATACACTTCTCTAGT+TGG | 0.422278 | 2.3:+2404785 | None:intergenic |
TTATAAGCTCCTCCATTGCT+TGG | 0.425119 | 2.3:+2406832 | None:intergenic |
TGAAAATCCTGAGGGCAGTA+TGG | 0.428055 | 2.3:+2403435 | None:intergenic |
AATCAGAAATAGAGAAACTA+AGG | 0.429794 | 2.3:-2407849 | MS.gene76505:CDS |
AGGTGGAAGAAGGGGAGGAA+GGG | 0.430407 | 2.3:-2409988 | MS.gene76505:CDS |
TGTATCTCTTGAAGCTTCAA+TGG | 0.438168 | 2.3:+2406683 | None:intergenic |
TGGATCTCTTTGGTCTTCCA+TGG | 0.443218 | 2.3:+2406703 | None:intergenic |
CTGTAGGAGAAGCATTTGTA+AGG | 0.443396 | 2.3:+2403311 | None:intergenic |
AGGCTTGTTGCCCCAATTGT+GGG | 0.447887 | 2.3:-2407792 | MS.gene76505:CDS |
TTAGGTGTTGCCACATTGGC+TGG | 0.448272 | 2.3:-2404147 | MS.gene76505:intron |
ATTGAAGCTTCAAGAGATAC+AGG | 0.451772 | 2.3:-2406681 | MS.gene76505:CDS |
CCCATCTGGTTGCATTATTG+AGG | 0.452497 | 2.3:-2404657 | MS.gene76505:CDS |
GTAATATGGAGGTGGAAGAA+GGG | 0.456514 | 2.3:-2409997 | MS.gene76505:CDS |
TACGCACCTGTGGATATTAC+CGG | 0.457137 | 2.3:-2403499 | MS.gene76505:CDS |
TCTTGATGAGTCAAGAATAA+TGG | 0.457181 | 2.3:-2406865 | MS.gene76505:CDS |
ACAAGTCTAAATTGTGAAGA+TGG | 0.459079 | 2.3:-2403220 | MS.gene76505:CDS |
TCCAACTAAATCCAAATCAA+TGG | 0.462181 | 2.3:-2409915 | MS.gene76505:CDS |
TTTCTGATGGTTTGGAGTCA+AGG | 0.463190 | 2.3:-2403408 | MS.gene76505:CDS |
GTGCCTCAAGCTTCCATACA+TGG | 0.463763 | 2.3:-2404065 | MS.gene76505:CDS |
GCTTTAGGGAAATATGCATC+AGG | 0.464608 | 2.3:-2406969 | MS.gene76505:CDS |
GACGTTCGCATTGAAGTTGA+AGG | 0.466117 | 2.3:+2404321 | None:intergenic |
AAATGCAGAAAACGCCCATC+TGG | 0.466193 | 2.3:-2404671 | MS.gene76505:CDS |
TGCTATGTTTGCAGAATCAA+TGG | 0.466472 | 2.3:-2406478 | MS.gene76505:intron |
TCCTTTGGCTAAATTTGCAA+TGG | 0.466744 | 2.3:+2403738 | None:intergenic |
TAGTAACCTTAGTCCATGTA+TGG | 0.466982 | 2.3:+2404052 | None:intergenic |
CACAAATTCTTACGAATCAA+TGG | 0.474074 | 2.3:-2403527 | MS.gene76505:CDS |
GCTAAGAGAGAGAGCTGGAG+AGG | 0.488674 | 2.3:+2410490 | None:intergenic |
TAATATGGAGGTGGAAGAAG+GGG | 0.489966 | 2.3:-2409996 | MS.gene76505:CDS |
CTTATTTATGGTCTCTCGTA+GGG | 0.492068 | 2.3:+2407813 | None:intergenic |
ACTTCTCTAGTTGGAACCAT+TGG | 0.492214 | 2.3:+2404794 | None:intergenic |
AATGATCCTAGTGAACCTCT+TGG | 0.492403 | 2.3:-2403985 | MS.gene76505:CDS |
GTAAAACTGGAGAAGACATA+AGG | 0.495014 | 2.3:-2404029 | MS.gene76505:CDS |
ATTATTGAGGATAAGTCAAA+TGG | 0.496385 | 2.3:-2404644 | MS.gene76505:CDS |
AAGGCTTGTTGCCCCAATTG+TGG | 0.499744 | 2.3:-2407793 | MS.gene76505:CDS |
TGGCTTTAAATAGGTAGTAT+GGG | 0.500533 | 2.3:-2404441 | MS.gene76505:intron |
CTTATAAAGATGGCAACAAT+GGG | 0.505105 | 2.3:-2406816 | MS.gene76505:CDS |
CAGTGGGATATAATGTCTAA+TGG | 0.509556 | 2.3:-2403775 | MS.gene76505:CDS |
GGTATTCAATCCGTGATGAC+CGG | 0.513881 | 2.3:-2403478 | MS.gene76505:CDS |
CCTTATTTATGGTCTCTCGT+AGG | 0.514357 | 2.3:+2407812 | None:intergenic |
GCACCATCTCTGTTTGTGGT+GGG | 0.514855 | 2.3:+2407766 | None:intergenic |
AAATCAATGGATGAATTTGA+AGG | 0.515118 | 2.3:-2409902 | MS.gene76505:CDS |
AATCAAAAGAAAACAATATG+TGG | 0.518388 | 2.3:-2403567 | MS.gene76505:CDS |
TGCACCATCTCTGTTTGTGG+TGG | 0.525119 | 2.3:+2407765 | None:intergenic |
TCCTCAATAATGCAACCAGA+TGG | 0.528035 | 2.3:+2404656 | None:intergenic |
TGGTTTGGAGTCAAGGCAAA+TGG | 0.529541 | 2.3:-2403401 | MS.gene76505:CDS |
GTTCCCATGAAGGATTCAAC+TGG | 0.531129 | 2.3:-2404275 | MS.gene76505:intron |
AAATCGTCGTACCCAAATCA+AGG | 0.531425 | 2.3:-2408012 | MS.gene76505:intron |
CACCATCTCTGTTTGTGGTG+GGG | 0.533160 | 2.3:+2407767 | None:intergenic |
AAGCTTCCATACATGGACTA+AGG | 0.536882 | 2.3:-2404058 | MS.gene76505:CDS |
TGGTGGGGACCCCACAATTG+GGG | 0.540284 | 2.3:+2407782 | None:intergenic |
GCTTATAAAGATGGCAACAA+TGG | 0.540324 | 2.3:-2406817 | MS.gene76505:CDS |
GGAGAAGGTTCTAACAAGAA+TGG | 0.540967 | 2.3:-2406398 | MS.gene76505:CDS |
GTTGCAAATGTTAACACCAA+TGG | 0.544408 | 2.3:-2404810 | MS.gene76505:CDS |
ATAGTTAAGTATTTCACGAC+CGG | 0.544434 | 2.3:+2406764 | None:intergenic |
TCCATTGTTAATTTGGCTGT+AGG | 0.545967 | 2.3:+2403295 | None:intergenic |
GGCAACAAACGTTCCCATGA+AGG | 0.546780 | 2.3:-2404285 | MS.gene76505:CDS |
AATGCCTTGCCCCAAAAGCT+AGG | 0.549012 | 2.3:+2404354 | None:intergenic |
TCCATTGCAAATTTAGCCAA+AGG | 0.550629 | 2.3:-2403739 | MS.gene76505:CDS |
CGAATCACATCCGGTCATCA+CGG | 0.551333 | 2.3:+2403468 | None:intergenic |
TAGATTGCTCGAATCACATC+CGG | 0.551516 | 2.3:+2403459 | None:intergenic |
AATGGAGGAGCTTATAAAGA+TGG | 0.553738 | 2.3:-2406826 | MS.gene76505:CDS |
ATTCTCTTGGTCATGACTAG+TGG | 0.554085 | 2.3:+2406926 | None:intergenic |
AGCAATTAGGTCTTGCTCCA+AGG | 0.554546 | 2.3:-2408055 | MS.gene76505:CDS |
TAACTATGATGAATATATGA+AGG | 0.554639 | 2.3:-2406748 | MS.gene76505:CDS |
TCACCAGTTGAATCCTTCAT+GGG | 0.555142 | 2.3:+2404272 | None:intergenic |
GGGATATAATGTCTAATGGT+GGG | 0.556948 | 2.3:-2403771 | MS.gene76505:CDS |
GGCAAATGGTAATTACTTCG+AGG | 0.560541 | 2.3:-2403387 | MS.gene76505:CDS |
AATCTAGCCATACTGCCCTC+AGG | 0.562964 | 2.3:-2403442 | MS.gene76505:CDS |
GAGGAAGGGAGTACAATAGG+AGG | 0.565183 | 2.3:-2409974 | MS.gene76505:CDS |
TGAATACCGGTAATATCCAC+AGG | 0.566945 | 2.3:+2403493 | None:intergenic |
TATGGAGGTGGAAGAAGGGG+AGG | 0.567505 | 2.3:-2409993 | MS.gene76505:CDS |
GGCTTGTTGCCCCAATTGTG+GGG | 0.570159 | 2.3:-2407791 | MS.gene76505:CDS |
AGAAAAGGAAGAAATATCAC+AGG | 0.572043 | 2.3:-2409808 | MS.gene76505:CDS |
AATGGTAATTACTTCGAGGC+GGG | 0.572459 | 2.3:-2403383 | MS.gene76505:CDS |
GGTCATCACGGATTGAATAC+CGG | 0.575578 | 2.3:+2403480 | None:intergenic |
CCTCAATAATGCAACCAGAT+GGG | 0.578551 | 2.3:+2404657 | None:intergenic |
GGATGTAGTAAACCAAGCAA+TGG | 0.580722 | 2.3:-2406844 | MS.gene76505:CDS |
CTAAGAGAGAGAGCTGGAGA+GGG | 0.582499 | 2.3:+2410491 | None:intergenic |
TTCTGAACAGATCAGAGTCA+TGG | 0.585454 | 2.3:-2409780 | MS.gene76505:CDS |
ATTGTTAGGTGTTGCCACAT+TGG | 0.587255 | 2.3:-2404151 | MS.gene76505:intron |
ATCAGAAATAGAGAAACTAA+GGG | 0.588729 | 2.3:-2407848 | MS.gene76505:CDS |
TGGGATATAATGTCTAATGG+TGG | 0.590022 | 2.3:-2403772 | MS.gene76505:CDS |
ACAAGGCTAAGAGAGAGAGC+TGG | 0.592876 | 2.3:+2410485 | None:intergenic |
TCCTACAGCCAAATTAACAA+TGG | 0.597793 | 2.3:-2403296 | MS.gene76505:CDS |
GCCGTTGAAAATTCAGACCA+TGG | 0.602698 | 2.3:-2406720 | MS.gene76505:CDS |
TACAATAGGAGGTGAGCGTG+TGG | 0.603598 | 2.3:-2409963 | MS.gene76505:CDS |
TAATACATGTGTAGGTAGAG+AGG | 0.607160 | 2.3:-2407001 | MS.gene76505:intron |
GACACTATATGCAAAGGAGA+AGG | 0.607999 | 2.3:-2406413 | MS.gene76505:CDS |
TGTAGTAAACCAAGCAATGG+AGG | 0.608774 | 2.3:-2406841 | MS.gene76505:CDS |
GATGAACTTGAAGATGATGA+AGG | 0.609560 | 2.3:-2409878 | MS.gene76505:CDS |
TTACAGCATCAAGAAAACAT+TGG | 0.613848 | 2.3:+2406628 | None:intergenic |
AGCTAGGCCACTGTTGACAA+TGG | 0.614429 | 2.3:+2404370 | None:intergenic |
GATGAAGGTGAAGATGATGA+AGG | 0.621690 | 2.3:-2409863 | MS.gene76505:CDS |
AGAAACAATTGAAAATCCTG+AGG | 0.621946 | 2.3:+2403426 | None:intergenic |
CACAAACAGAGATGGTGCAA+TGG | 0.622132 | 2.3:-2407761 | MS.gene76505:CDS |
CAAATTAACAATGGAGTCTG+TGG | 0.624759 | 2.3:-2403287 | MS.gene76505:CDS |
GAAACAATTGAAAATCCTGA+GGG | 0.625241 | 2.3:+2403427 | None:intergenic |
ACGTTCGCATTGAAGTTGAA+GGG | 0.628268 | 2.3:+2404322 | None:intergenic |
GTCCCCACCACAAACAGAGA+TGG | 0.629482 | 2.3:-2407769 | MS.gene76505:CDS |
ATCAATCCAAGAGGTTCACT+AGG | 0.631634 | 2.3:+2403979 | None:intergenic |
AATAGGAGGTGAGCGTGTGG+AGG | 0.632405 | 2.3:-2409960 | MS.gene76505:CDS |
ACAGTTGACACTATATGCAA+AGG | 0.638611 | 2.3:-2406419 | MS.gene76505:CDS |
TGGTTACGTAGCTTAGAGAC+CGG | 0.638972 | 2.3:-2406783 | MS.gene76505:CDS |
ATGTTTGCAGAATCAATGGA+AGG | 0.640926 | 2.3:-2406474 | MS.gene76505:intron |
AAATGCCAAACTCAAAGCTG+AGG | 0.643784 | 2.3:-2407710 | MS.gene76505:intron |
TTGGCTTTAGAAGTAGAAGG+AGG | 0.644576 | 2.3:+2410524 | None:intergenic |
CTTTAAATAGGTAGTATGGG+TGG | 0.647600 | 2.3:-2404438 | MS.gene76505:intron |
GCTGCCTTAGATATTAAACA+TGG | 0.649260 | 2.3:+2406443 | None:intergenic |
GCACAAACTATCAATCCAAG+AGG | 0.652201 | 2.3:+2403970 | None:intergenic |
CACATCCTGATGAAAAGCAG+AGG | 0.653751 | 2.3:-2408091 | MS.gene76505:CDS |
GATGATGAAGGTGATGGTGA+TGG | 0.658053 | 2.3:-2409851 | MS.gene76505:CDS |
TCTAAGCTACGTAACCACAT+TGG | 0.660378 | 2.3:+2406789 | None:intergenic |
AAATGGTAATTACTTCGAGG+CGG | 0.664685 | 2.3:-2403384 | MS.gene76505:CDS |
GGATGAAACTCGTCGAACTG+AGG | 0.665962 | 2.3:-2403893 | MS.gene76505:intron |
GGTGAAGATGATGAAGGTGA+TGG | 0.672812 | 2.3:-2409857 | MS.gene76505:CDS |
CTTTAGGGAAATATGCATCA+GGG | 0.674316 | 2.3:-2406968 | MS.gene76505:CDS |
AATGGTGGTATACGCACCTG+TGG | 0.675541 | 2.3:-2403509 | MS.gene76505:CDS |
AGTTGGCACAAAGAATGACA+TGG | 0.675595 | 2.3:-2404107 | MS.gene76505:CDS |
AGTCCATGTATGGAAGCTTG+AGG | 0.679953 | 2.3:+2404062 | None:intergenic |
TATCGCACCATTGTCAACAG+TGG | 0.688962 | 2.3:-2404377 | MS.gene76505:CDS |
AAATTCTTACGAATCAATGG+TGG | 0.698012 | 2.3:-2403524 | MS.gene76505:CDS |
AGATACTGCAAGCAGTTGAG+TGG | 0.698583 | 2.3:-2404761 | MS.gene76505:CDS |
CAACAATGGGTGAACCAATG+TGG | 0.720119 | 2.3:-2406803 | MS.gene76505:CDS |
TCATGACTAGTGGAACATGA+AGG | 0.724034 | 2.3:+2406936 | None:intergenic |
TTAGCCAAAGGACAAGACAG+AGG | 0.726395 | 2.3:-2403727 | MS.gene76505:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 2403216 | 2410573 | 2403216 | ID=MS.gene76505 |
chr2.3 | mRNA | 2403216 | 2410573 | 2403216 | ID=MS.gene76505.t1;Parent=MS.gene76505 |
chr2.3 | exon | 2410487 | 2410573 | 2410487 | ID=MS.gene76505.t1.exon1;Parent=MS.gene76505.t1 |
chr2.3 | CDS | 2410487 | 2410573 | 2410487 | ID=cds.MS.gene76505.t1;Parent=MS.gene76505.t1 |
chr2.3 | exon | 2409776 | 2410077 | 2409776 | ID=MS.gene76505.t1.exon2;Parent=MS.gene76505.t1 |
chr2.3 | CDS | 2409776 | 2410077 | 2409776 | ID=cds.MS.gene76505.t1;Parent=MS.gene76505.t1 |
chr2.3 | exon | 2408013 | 2408130 | 2408013 | ID=MS.gene76505.t1.exon3;Parent=MS.gene76505.t1 |
chr2.3 | CDS | 2408013 | 2408130 | 2408013 | ID=cds.MS.gene76505.t1;Parent=MS.gene76505.t1 |
chr2.3 | exon | 2407711 | 2407905 | 2407711 | ID=MS.gene76505.t1.exon4;Parent=MS.gene76505.t1 |
chr2.3 | CDS | 2407711 | 2407905 | 2407711 | ID=cds.MS.gene76505.t1;Parent=MS.gene76505.t1 |
chr2.3 | exon | 2406632 | 2407009 | 2406632 | ID=MS.gene76505.t1.exon5;Parent=MS.gene76505.t1 |
chr2.3 | CDS | 2406632 | 2407009 | 2406632 | ID=cds.MS.gene76505.t1;Parent=MS.gene76505.t1 |
chr2.3 | exon | 2406385 | 2406486 | 2406385 | ID=MS.gene76505.t1.exon6;Parent=MS.gene76505.t1 |
chr2.3 | CDS | 2406385 | 2406486 | 2406385 | ID=cds.MS.gene76505.t1;Parent=MS.gene76505.t1 |
chr2.3 | exon | 2404634 | 2404843 | 2404634 | ID=MS.gene76505.t1.exon7;Parent=MS.gene76505.t1 |
chr2.3 | CDS | 2404634 | 2404843 | 2404634 | ID=cds.MS.gene76505.t1;Parent=MS.gene76505.t1 |
chr2.3 | exon | 2404276 | 2404450 | 2404276 | ID=MS.gene76505.t1.exon8;Parent=MS.gene76505.t1 |
chr2.3 | CDS | 2404276 | 2404450 | 2404276 | ID=cds.MS.gene76505.t1;Parent=MS.gene76505.t1 |
chr2.3 | exon | 2403894 | 2404165 | 2403894 | ID=MS.gene76505.t1.exon9;Parent=MS.gene76505.t1 |
chr2.3 | CDS | 2403894 | 2404165 | 2403894 | ID=cds.MS.gene76505.t1;Parent=MS.gene76505.t1 |
chr2.3 | exon | 2403708 | 2403794 | 2403708 | ID=MS.gene76505.t1.exon10;Parent=MS.gene76505.t1 |
chr2.3 | CDS | 2403708 | 2403794 | 2403708 | ID=cds.MS.gene76505.t1;Parent=MS.gene76505.t1 |
chr2.3 | exon | 2403216 | 2403596 | 2403216 | ID=MS.gene76505.t1.exon11;Parent=MS.gene76505.t1 |
chr2.3 | CDS | 2403216 | 2403596 | 2403216 | ID=cds.MS.gene76505.t1;Parent=MS.gene76505.t1 |
Gene Sequence |
Protein sequence |