Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76593.t1 | XP_003613795.1 | 98.2 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 3.70E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76593.t1 | P42815 | 64.9 | 222 | 78 | 0 | 6 | 227 | 1 | 222 | 6.9e-95 | 348.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76593.t1 | G7KFA7 | 98.2 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 2.7e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene76593 | 0.823244 | 1.54E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76593.t1 | MTR_5g041010 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 7.71e-170 | 466 |
| MS.gene76593.t1 | MTR_5g041040 | 73.684 | 228 | 59 | 1 | 1 | 227 | 1 | 228 | 5.21e-120 | 340 |
| MS.gene76593.t1 | MTR_5g040940 | 65.471 | 223 | 75 | 1 | 7 | 227 | 6 | 228 | 2.43e-113 | 323 |
| MS.gene76593.t1 | MTR_5g040960 | 66.222 | 225 | 72 | 3 | 7 | 227 | 6 | 230 | 1.45e-111 | 319 |
| MS.gene76593.t1 | MTR_5g041080 | 64.629 | 229 | 79 | 2 | 1 | 227 | 1 | 229 | 4.98e-107 | 308 |
| MS.gene76593.t1 | MTR_5g041095 | 64.629 | 229 | 78 | 3 | 1 | 227 | 1 | 228 | 2.83e-98 | 285 |
| MS.gene76593.t1 | MTR_3g030660 | 33.824 | 204 | 121 | 10 | 27 | 225 | 79 | 273 | 4.86e-26 | 102 |
| MS.gene76593.t1 | MTR_3g030640 | 35.122 | 205 | 117 | 12 | 27 | 225 | 74 | 268 | 1.02e-25 | 101 |
| MS.gene76593.t1 | MTR_0129s0080 | 28.829 | 222 | 144 | 8 | 1 | 215 | 1 | 215 | 1.19e-25 | 100 |
| MS.gene76593.t1 | MTR_6g071425 | 34.211 | 190 | 115 | 7 | 27 | 210 | 78 | 263 | 1.20e-25 | 101 |
| MS.gene76593.t1 | MTR_8g028080 | 36.126 | 191 | 98 | 6 | 26 | 193 | 42 | 231 | 1.21e-25 | 101 |
| MS.gene76593.t1 | MTR_5g086410 | 32.796 | 186 | 116 | 7 | 28 | 211 | 21 | 199 | 2.07e-25 | 99.4 |
| MS.gene76593.t1 | MTR_4g057825 | 30.693 | 202 | 120 | 9 | 26 | 225 | 20 | 203 | 4.31e-23 | 92.8 |
| MS.gene76593.t1 | MTR_2g104370 | 34.177 | 158 | 89 | 5 | 63 | 210 | 34 | 186 | 2.33e-22 | 90.9 |
| MS.gene76593.t1 | MTR_2g021750 | 33.149 | 181 | 108 | 8 | 33 | 211 | 163 | 332 | 8.50e-22 | 92.0 |
| MS.gene76593.t1 | MTR_2g021830 | 30.435 | 184 | 111 | 7 | 35 | 216 | 14 | 182 | 4.65e-21 | 87.0 |
| MS.gene76593.t1 | MTR_2g021910 | 29.798 | 198 | 122 | 7 | 9 | 206 | 230 | 410 | 1.32e-20 | 90.1 |
| MS.gene76593.t1 | MTR_6g090200 | 28.378 | 222 | 137 | 9 | 3 | 221 | 1 | 203 | 2.45e-20 | 85.9 |
| MS.gene76593.t1 | MTR_6g071505 | 32.474 | 194 | 111 | 10 | 26 | 210 | 70 | 252 | 4.05e-20 | 86.3 |
| MS.gene76593.t1 | MTR_1g048200 | 29.557 | 203 | 116 | 9 | 27 | 211 | 104 | 297 | 1.28e-19 | 85.5 |
| MS.gene76593.t1 | MTR_0002s1200 | 29.851 | 201 | 130 | 7 | 27 | 224 | 104 | 296 | 3.34e-19 | 84.3 |
| MS.gene76593.t1 | MTR_5g086770 | 32.258 | 155 | 94 | 4 | 58 | 210 | 62 | 207 | 1.28e-18 | 81.3 |
| MS.gene76593.t1 | MTR_5g022810 | 26.108 | 203 | 133 | 9 | 35 | 225 | 32 | 229 | 1.30e-14 | 70.9 |
| MS.gene76593.t1 | MTR_2g104300 | 32.773 | 119 | 63 | 4 | 27 | 140 | 27 | 133 | 6.82e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76593.t1 | AT1G14220 | 68.468 | 222 | 70 | 0 | 6 | 227 | 7 | 228 | 2.06e-121 | 344 |
| MS.gene76593.t1 | AT1G26820 | 64.865 | 222 | 78 | 0 | 6 | 227 | 1 | 222 | 8.17e-120 | 340 |
| MS.gene76593.t1 | AT2G02990 | 62.389 | 226 | 84 | 1 | 3 | 227 | 5 | 230 | 8.13e-108 | 310 |
| MS.gene76593.t1 | AT1G14210 | 49.333 | 225 | 108 | 3 | 8 | 227 | 5 | 228 | 2.13e-78 | 236 |
| MS.gene76593.t1 | AT2G39780 | 40.465 | 215 | 110 | 9 | 26 | 227 | 31 | 240 | 7.06e-41 | 140 |
| MS.gene76593.t1 | AT2G39780 | 33.645 | 214 | 94 | 9 | 26 | 227 | 31 | 208 | 6.45e-25 | 98.2 |
Find 48 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAAATTCTCTTAAAATT+TGG | 0.068088 | 5.1:-31030629 | None:intergenic |
| AATAAATTCTCTTAAAATTT+GGG | 0.174692 | 5.1:-31030628 | None:intergenic |
| GGAAAACCGACGGCAGATTT+TGG | 0.249748 | 5.1:+31029036 | MS.gene76593:CDS |
| TACATGTGTGTGGACACTTC+TGG | 0.257104 | 5.1:+31030544 | MS.gene76593:CDS |
| TCTCTGTTACATTCTATTCC+TGG | 0.271644 | 5.1:-31030490 | None:intergenic |
| TCTTCTCCATGTTCTTCATT+AGG | 0.290913 | 5.1:-31029867 | None:intergenic |
| TGAAACTGCTCTTAAACTTA+AGG | 0.325137 | 5.1:+31029999 | MS.gene76593:CDS |
| ATGCTGTAAAATTCATCATT+TGG | 0.338290 | 5.1:-31030424 | None:intergenic |
| TGAAGAACATGGAGAAGAAT+TGG | 0.376193 | 5.1:+31029872 | MS.gene76593:CDS |
| CTCTGTTACATTCTATTCCT+GGG | 0.397072 | 5.1:-31030489 | None:intergenic |
| ACATGTGTGTGGACACTTCT+GGG | 0.410973 | 5.1:+31030545 | MS.gene76593:CDS |
| GATTTATCAAAGGTACTATC+AGG | 0.430438 | 5.1:-31029114 | None:intergenic |
| TCGAGTGTCCTTTGCTTCCA+AGG | 0.440409 | 5.1:+31030578 | MS.gene76593:CDS |
| TAGATTCTGGTCACATGAAT+GGG | 0.446262 | 5.1:+31029927 | MS.gene76593:CDS |
| TTAGATTCTGGTCACATGAA+TGG | 0.446371 | 5.1:+31029926 | MS.gene76593:CDS |
| AGCTGCTGTTATCCGAAAAC+CGG | 0.451161 | 5.1:+31029015 | MS.gene76593:CDS |
| CTTCAGATCCTCACGAATGC+AGG | 0.500376 | 5.1:+31030036 | MS.gene76593:CDS |
| AATCTAAAACCATTGCTACT+TGG | 0.502220 | 5.1:-31029910 | None:intergenic |
| GAGGCTATAAAAGAAGCTAC+AGG | 0.504354 | 5.1:+31030460 | MS.gene76593:CDS |
| CATGATCCATCCTTGTAGTT+AGG | 0.507867 | 5.1:-31029075 | None:intergenic |
| TGTTCACCACATCTACTCCT+TGG | 0.517596 | 5.1:-31030595 | None:intergenic |
| TTGTAAATCATGTAGTGGCC+AGG | 0.524306 | 5.1:+31028970 | MS.gene76593:intron |
| ATAAATTCTCTTAAAATTTG+GGG | 0.530641 | 5.1:-31030627 | None:intergenic |
| ACATGTAAACTTGATAAAGC+TGG | 0.536047 | 5.1:-31030528 | None:intergenic |
| ACTATCAGGATCACAGTTTG+AGG | 0.541926 | 5.1:-31029100 | None:intergenic |
| TTTGTGTCACAGTATGCTCC+TGG | 0.542043 | 5.1:-31028988 | None:intergenic |
| TGCTCTTAAACTTAAGGAGA+AGG | 0.542398 | 5.1:+31030005 | MS.gene76593:CDS |
| TGGACTGTGGCCTAACTACA+AGG | 0.563980 | 5.1:+31029065 | MS.gene76593:CDS |
| CACAGACCTAATGAAGAACA+TGG | 0.564513 | 5.1:+31029861 | MS.gene76593:CDS |
| CTGCATTCGTGAGGATCTGA+AGG | 0.567948 | 5.1:-31030035 | None:intergenic |
| TCCGAAAACCGGAAAACCGA+CGG | 0.573447 | 5.1:+31029026 | MS.gene76593:CDS |
| CTGAGCTGTCCAAGTAGCAA+TGG | 0.577334 | 5.1:+31029901 | MS.gene76593:CDS |
| TTATCAAGTTTACATGTGTG+TGG | 0.577359 | 5.1:+31030534 | MS.gene76593:CDS |
| CATCTACTCCTTGGAAGCAA+AGG | 0.580278 | 5.1:-31030586 | None:intergenic |
| CTACTTGGACAGCTCAGAGA+TGG | 0.586851 | 5.1:-31029895 | None:intergenic |
| CTAACTACAAGGATGGATCA+TGG | 0.589661 | 5.1:+31029076 | MS.gene76593:CDS |
| CTGTGGCCTAACTACAAGGA+TGG | 0.594821 | 5.1:+31029069 | MS.gene76593:CDS |
| TTGCTTCCAAGGAGTAGATG+TGG | 0.607814 | 5.1:+31030589 | MS.gene76593:CDS |
| GAAGCTACAGGATTTACCCC+AGG | 0.608161 | 5.1:+31030472 | MS.gene76593:CDS |
| GAATACCTGGGATTTATCAA+AGG | 0.608537 | 5.1:-31029124 | None:intergenic |
| TATTGTTACCTGCATTCGTG+AGG | 0.616599 | 5.1:-31030044 | None:intergenic |
| TAGTACCTTTGATAAATCCC+AGG | 0.623148 | 5.1:+31029119 | MS.gene76593:CDS |
| TCTGTTACATTCTATTCCTG+GGG | 0.631969 | 5.1:-31030488 | None:intergenic |
| CTATCAGGATCACAGTTTGA+GGG | 0.633800 | 5.1:-31029099 | None:intergenic |
| CATTCGTGAGGATCTGAAGG+AGG | 0.637264 | 5.1:-31030032 | None:intergenic |
| TGAATGCCAAAATCTGCCGT+CGG | 0.655371 | 5.1:-31029042 | None:intergenic |
| TCACATGAATGGGAGAAACA+TGG | 0.658275 | 5.1:+31029937 | MS.gene76593:CDS |
| CAGCATAGAAAACATCTCAG+AGG | 0.720899 | 5.1:+31030441 | MS.gene76593:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATCAAAGAAAAAA+AGG | - | chr5.1:31029254-31029273 | None:intergenic | 10.0% |
| !! | AAACAATGTTTGATAAATTA+TGG | - | chr5.1:31029652-31029671 | None:intergenic | 15.0% |
| !! | AAAGTTTCTAATCATTTAAT+GGG | + | chr5.1:31030378-31030397 | MS.gene76593:intron | 15.0% |
| !! | AGTTGAAAATATCATTTATT+TGG | + | chr5.1:31029766-31029785 | MS.gene76593:intron | 15.0% |
| !!! | TCATCTAACTATTAATTTTA+TGG | + | chr5.1:31028810-31028829 | MS.gene76593:intron | 15.0% |
| !!! | TTTTTTATTTATTTAAGCCA+TGG | - | chr5.1:31029223-31029242 | None:intergenic | 15.0% |
| !! | AAAAAGAATAAAGAATACCT+GGG | - | chr5.1:31029139-31029158 | None:intergenic | 20.0% |
| !! | AAATTGATAAACCTAGAATT+TGG | + | chr5.1:31029274-31029293 | MS.gene76593:intron | 20.0% |
| !! | AATTAACTTCACATAATCTA+TGG | + | chr5.1:31029509-31029528 | MS.gene76593:intron | 20.0% |
| !! | AATTGATAAACCTAGAATTT+GGG | + | chr5.1:31029275-31029294 | MS.gene76593:intron | 20.0% |
| !! | CAAAGTTTCTAATCATTTAA+TGG | + | chr5.1:31030377-31030396 | MS.gene76593:intron | 20.0% |
| !! | GAGAAAATGATATAATATGT+CGG | - | chr5.1:31030237-31030256 | None:intergenic | 20.0% |
| !!! | GGTTTGAAAAATTGTTTTTA+TGG | + | chr5.1:31029362-31029381 | MS.gene76593:intron | 20.0% |
| !!! | TCTACTTTTTTTCTTCTATT+TGG | - | chr5.1:31029712-31029731 | None:intergenic | 20.0% |
| ! | AATGGGAATATTGAATTTCA+GGG | + | chr5.1:31030395-31030414 | MS.gene76593:intron | 25.0% |
| ! | ATGCTGTAAAATTCATCATT+TGG | - | chr5.1:31030427-31030446 | None:intergenic | 25.0% |
| ! | ATGGCTACATAAAGAAAAAA+TGG | + | chr5.1:31028837-31028856 | MS.gene76593:intron | 25.0% |
| ! | ATTGATAAACCTAGAATTTG+GGG | + | chr5.1:31029276-31029295 | MS.gene76593:intron | 25.0% |
| ! | ATTGTTTGTAAATCATGTAG+TGG | + | chr5.1:31028965-31028984 | MS.gene76593:intron | 25.0% |
| ! | CAAAAAGAATAAAGAATACC+TGG | - | chr5.1:31029140-31029159 | None:intergenic | 25.0% |
| ! | TAATGGGAATATTGAATTTC+AGG | + | chr5.1:31030394-31030413 | MS.gene76593:intron | 25.0% |
| ! | TGGCTACATAAAGAAAAAAT+GGG | + | chr5.1:31028838-31028857 | MS.gene76593:intron | 25.0% |
| ! | TTTATTTAAGCCATGGTATA+AGG | - | chr5.1:31029216-31029235 | None:intergenic | 25.0% |
| !! | ACATTGTTTGAAGTATATGA+TGG | + | chr5.1:31029663-31029682 | MS.gene76593:intron | 25.0% |
| !! | CTATTAATTTTATGGCTCAA+TGG | + | chr5.1:31028818-31028837 | MS.gene76593:intron | 25.0% |
| ACATGTAAACTTGATAAAGC+TGG | - | chr5.1:31030531-31030550 | None:intergenic | 30.0% | |
| GGCTACATAAAGAAAAAATG+GGG | + | chr5.1:31028839-31028858 | MS.gene76593:intron | 30.0% | |
| TATCGTGCAAGTCTTAAATT+TGG | + | chr5.1:31029341-31029360 | MS.gene76593:intron | 30.0% | |
| TGAAACTGCTCTTAAACTTA+AGG | + | chr5.1:31029999-31030018 | MS.gene76593:CDS | 30.0% | |
| TTATCAAGTTTACATGTGTG+TGG | + | chr5.1:31030534-31030553 | MS.gene76593:CDS | 30.0% | |
| TTATGATTTGATCAACCGAA+GGG | - | chr5.1:31029409-31029428 | None:intergenic | 30.0% | |
| TTATTTCAGACCTTATACCA+TGG | + | chr5.1:31029203-31029222 | MS.gene76593:intron | 30.0% | |
| TTGATAAACCTAGAATTTGG+GGG | + | chr5.1:31029277-31029296 | MS.gene76593:intron | 30.0% | |
| ! | AATCTAAAACCATTGCTACT+TGG | - | chr5.1:31029913-31029932 | None:intergenic | 30.0% |
| ! | AGTTAATTTTATTAGCCCCT+AGG | - | chr5.1:31029497-31029516 | None:intergenic | 30.0% |
| ! | TTTAAGACTTGCACGATAAA+AGG | - | chr5.1:31029339-31029358 | None:intergenic | 30.0% |
| ! | TTTCTTCTATTTTGTTCAGC+AGG | + | chr5.1:31028750-31028769 | MS.gene76593:CDS | 30.0% |
| !! | GATTTATCAAAGGTACTATC+AGG | - | chr5.1:31029117-31029136 | None:intergenic | 30.0% |
| !! | TTCCAATCGACTTGTTTAAT+GGG | + | chr5.1:31029462-31029481 | MS.gene76593:intron | 30.0% |
| AACCCATTAAACAAGTCGAT+TGG | - | chr5.1:31029467-31029486 | None:intergenic | 35.0% | |
| ATAGTGTATCATTGTCCTGT+CGG | + | chr5.1:31030312-31030331 | MS.gene76593:intron | 35.0% | |
| ATGTTAACTGAAAAGCCCTT+CGG | + | chr5.1:31029391-31029410 | MS.gene76593:intron | 35.0% | |
| CTCTGTTACATTCTATTCCT+GGG | - | chr5.1:31030492-31030511 | None:intergenic | 35.0% | |
| GAATACCTGGGATTTATCAA+AGG | - | chr5.1:31029127-31029146 | None:intergenic | 35.0% | |
| GTTATGATTTGATCAACCGA+AGG | - | chr5.1:31029410-31029429 | None:intergenic | 35.0% | |
| TAAACGTGCATGTTTGAATC+TGG | - | chr5.1:31028884-31028903 | None:intergenic | 35.0% | |
| TAGATTCTGGTCACATGAAT+GGG | + | chr5.1:31029927-31029946 | MS.gene76593:CDS | 35.0% | |
| TAGTACCTTTGATAAATCCC+AGG | + | chr5.1:31029119-31029138 | MS.gene76593:CDS | 35.0% | |
| TCTCTGTTACATTCTATTCC+TGG | - | chr5.1:31030493-31030512 | None:intergenic | 35.0% | |
| TCTGTTACATTCTATTCCTG+GGG | - | chr5.1:31030491-31030510 | None:intergenic | 35.0% | |
| TCTTCTCCATGTTCTTCATT+AGG | - | chr5.1:31029870-31029889 | None:intergenic | 35.0% | |
| TGAAGAACATGGAGAAGAAT+TGG | + | chr5.1:31029872-31029891 | MS.gene76593:CDS | 35.0% | |
| TGCACGATAAAAGGAGTTAT+CGG | - | chr5.1:31029330-31029349 | None:intergenic | 35.0% | |
| TGCTCTTAAACTTAAGGAGA+AGG | + | chr5.1:31030005-31030024 | MS.gene76593:CDS | 35.0% | |
| TTAGATTCTGGTCACATGAA+TGG | + | chr5.1:31029926-31029945 | MS.gene76593:CDS | 35.0% | |
| !! | CTTCCAATCGACTTGTTTAA+TGG | + | chr5.1:31029461-31029480 | MS.gene76593:intron | 35.0% |
| !! | TAATGGGTTGAACAATCCTA+GGG | + | chr5.1:31029478-31029497 | MS.gene76593:intron | 35.0% |
| !! | TTAATGGGTTGAACAATCCT+AGG | + | chr5.1:31029477-31029496 | MS.gene76593:intron | 35.0% |
| !!! | GTAGCAATGGTTTTAGATTC+TGG | + | chr5.1:31029914-31029933 | MS.gene76593:CDS | 35.0% |
| ACTAAAGTCCCCCAAATTCT+AGG | - | chr5.1:31029288-31029307 | None:intergenic | 40.0% | |
| ACTATCAGGATCACAGTTTG+AGG | - | chr5.1:31029103-31029122 | None:intergenic | 40.0% | |
| ACTTTAGTAATCCCCGTATC+GGG | + | chr5.1:31029300-31029319 | MS.gene76593:intron | 40.0% | |
| CACAGACCTAATGAAGAACA+TGG | + | chr5.1:31029861-31029880 | MS.gene76593:CDS | 40.0% | |
| CAGCATAGAAAACATCTCAG+AGG | + | chr5.1:31030441-31030460 | MS.gene76593:CDS | 40.0% | |
| CATGATCCATCCTTGTAGTT+AGG | - | chr5.1:31029078-31029097 | None:intergenic | 40.0% | |
| CTAACTACAAGGATGGATCA+TGG | + | chr5.1:31029076-31029095 | MS.gene76593:CDS | 40.0% | |
| CTATCAGGATCACAGTTTGA+GGG | - | chr5.1:31029102-31029121 | None:intergenic | 40.0% | |
| GACTTTAGTAATCCCCGTAT+CGG | + | chr5.1:31029299-31029318 | MS.gene76593:intron | 40.0% | |
| GAGGCTATAAAAGAAGCTAC+AGG | + | chr5.1:31030460-31030479 | MS.gene76593:CDS | 40.0% | |
| TATTGTTACCTGCATTCGTG+AGG | - | chr5.1:31030047-31030066 | None:intergenic | 40.0% | |
| TCACATGAATGGGAGAAACA+TGG | + | chr5.1:31029937-31029956 | MS.gene76593:CDS | 40.0% | |
| TCCCATTGAATTTCTGCGAT+CGG | - | chr5.1:31029435-31029454 | None:intergenic | 40.0% | |
| TCCGATCGCAGAAATTCAAT+GGG | + | chr5.1:31029431-31029450 | MS.gene76593:intron | 40.0% | |
| TTCCGATCGCAGAAATTCAA+TGG | + | chr5.1:31029430-31029449 | MS.gene76593:intron | 40.0% | |
| TTGTAAATCATGTAGTGGCC+AGG | + | chr5.1:31028970-31028989 | MS.gene76593:intron | 40.0% | |
| ! | GGGCTTTTCAGTTAACATGA+TGG | - | chr5.1:31029389-31029408 | None:intergenic | 40.0% |
| !! | AATGGGTTGAACAATCCTAG+GGG | + | chr5.1:31029479-31029498 | MS.gene76593:intron | 40.0% |
| !! | ATTTTGGCATTCATGGACTG+TGG | + | chr5.1:31029052-31029071 | MS.gene76593:CDS | 40.0% |
| ACATGTGTGTGGACACTTCT+GGG | + | chr5.1:31030545-31030564 | MS.gene76593:CDS | 45.0% | |
| AGCTGCTGTTATCCGAAAAC+CGG | + | chr5.1:31029015-31029034 | MS.gene76593:CDS | 45.0% | |
| CATCTACTCCTTGGAAGCAA+AGG | - | chr5.1:31030589-31030608 | None:intergenic | 45.0% | |
| CTACATGTATGATGTCCGAC+AGG | - | chr5.1:31030330-31030349 | None:intergenic | 45.0% | |
| CTGTCGGACATCATACATGT+AGG | + | chr5.1:31030328-31030347 | MS.gene76593:intron | 45.0% | |
| GCACATACACGTCTGATCTA+AGG | + | chr5.1:31030199-31030218 | MS.gene76593:intron | 45.0% | |
| TACATGTGTGTGGACACTTC+TGG | + | chr5.1:31030544-31030563 | MS.gene76593:CDS | 45.0% | |
| TGAATGCCAAAATCTGCCGT+CGG | - | chr5.1:31029045-31029064 | None:intergenic | 45.0% | |
| TGTTCACCACATCTACTCCT+TGG | - | chr5.1:31030598-31030617 | None:intergenic | 45.0% | |
| TTATCAGTGCCACGAGTCAA+TGG | + | chr5.1:31030263-31030282 | MS.gene76593:intron | 45.0% | |
| TTGCTTCCAAGGAGTAGATG+TGG | + | chr5.1:31030589-31030608 | MS.gene76593:CDS | 45.0% | |
| TTTGTGTCACAGTATGCTCC+TGG | - | chr5.1:31028991-31029010 | None:intergenic | 45.0% | |
| !! | ACGGCAGATTTTGGCATTCA+TGG | + | chr5.1:31029045-31029064 | MS.gene76593:CDS | 45.0% |
| !! | ATAGACATGCCATTGACTCG+TGG | - | chr5.1:31030275-31030294 | None:intergenic | 45.0% |
| !!! | AAAATCTGCCGTCGGTTTTC+CGG | - | chr5.1:31029037-31029056 | None:intergenic | 45.0% |
| AGTTATCGGTCAGCCCGATA+CGG | - | chr5.1:31029316-31029335 | None:intergenic | 50.0% | |
| CATTCGTGAGGATCTGAAGG+AGG | - | chr5.1:31030035-31030054 | None:intergenic | 50.0% | |
| CTACTTGGACAGCTCAGAGA+TGG | - | chr5.1:31029898-31029917 | None:intergenic | 50.0% | |
| CTGAGCTGTCCAAGTAGCAA+TGG | + | chr5.1:31029901-31029920 | MS.gene76593:CDS | 50.0% | |
| CTGCATTCGTGAGGATCTGA+AGG | - | chr5.1:31030038-31030057 | None:intergenic | 50.0% | |
| CTGTGGCCTAACTACAAGGA+TGG | + | chr5.1:31029069-31029088 | MS.gene76593:CDS | 50.0% | |
| CTTCAGATCCTCACGAATGC+AGG | + | chr5.1:31030036-31030055 | MS.gene76593:CDS | 50.0% | |
| GAAGCTACAGGATTTACCCC+AGG | + | chr5.1:31030472-31030491 | MS.gene76593:CDS | 50.0% | |
| TCCGAAAACCGGAAAACCGA+CGG | + | chr5.1:31029026-31029045 | MS.gene76593:CDS | 50.0% | |
| TCGAGTGTCCTTTGCTTCCA+AGG | + | chr5.1:31030578-31030597 | MS.gene76593:CDS | 50.0% | |
| TGGACTGTGGCCTAACTACA+AGG | + | chr5.1:31029065-31029084 | MS.gene76593:CDS | 50.0% | |
| ! | GGAAAACCGACGGCAGATTT+TGG | + | chr5.1:31029036-31029055 | MS.gene76593:CDS | 50.0% |
| GTTATCGGTCAGCCCGATAC+GGG | - | chr5.1:31029315-31029334 | None:intergenic | 55.0% | |
| TTATCGGTCAGCCCGATACG+GGG | - | chr5.1:31029314-31029333 | None:intergenic | 55.0% | |
| !!! | GCCGTCGGTTTTCCGGTTTT+CGG | - | chr5.1:31029030-31029049 | None:intergenic | 55.0% |
| TCTCGCGTGCGTAGCTCAGT+TGG | - | chr5.1:31028929-31028948 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 31028667 | 31030639 | 31028667 | ID=MS.gene76593 |
| chr5.1 | mRNA | 31028667 | 31030639 | 31028667 | ID=MS.gene76593.t1;Parent=MS.gene76593 |
| chr5.1 | exon | 31028667 | 31028771 | 31028667 | ID=MS.gene76593.t1.exon1;Parent=MS.gene76593.t1 |
| chr5.1 | CDS | 31028667 | 31028771 | 31028667 | ID=cds.MS.gene76593.t1;Parent=MS.gene76593.t1 |
| chr5.1 | exon | 31028985 | 31029140 | 31028985 | ID=MS.gene76593.t1.exon2;Parent=MS.gene76593.t1 |
| chr5.1 | CDS | 31028985 | 31029140 | 31028985 | ID=cds.MS.gene76593.t1;Parent=MS.gene76593.t1 |
| chr5.1 | exon | 31029859 | 31030057 | 31029859 | ID=MS.gene76593.t1.exon3;Parent=MS.gene76593.t1 |
| chr5.1 | CDS | 31029859 | 31030057 | 31029859 | ID=cds.MS.gene76593.t1;Parent=MS.gene76593.t1 |
| chr5.1 | exon | 31030416 | 31030639 | 31030416 | ID=MS.gene76593.t1.exon4;Parent=MS.gene76593.t1 |
| chr5.1 | CDS | 31030416 | 31030639 | 31030416 | ID=cds.MS.gene76593.t1;Parent=MS.gene76593.t1 |
| Gene Sequence |
| Protein sequence |
