Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76904.t1 | XP_013447447.1 | 94 | 831 | 42 | 2 | 1 | 827 | 1 | 827 | 0.00E+00 | 1538.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76904.t1 | C0SQ89 | 56.4 | 770 | 308 | 10 | 54 | 807 | 122 | 879 | 1.1e-246 | 854.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76904.t1 | G7ZY08 | 94.0 | 831 | 42 | 2 | 1 | 827 | 1 | 827 | 0.0e+00 | 1538.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055957 | MS.gene76904 | 0.808126 | 3.61E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76904.t1 | MTR_7g007090 | 94.705 | 831 | 36 | 2 | 1 | 827 | 1 | 827 | 0.0 | 1596 |
| MS.gene76904.t1 | MTR_6g084890 | 90.299 | 835 | 73 | 3 | 1 | 827 | 1 | 835 | 0.0 | 1545 |
| MS.gene76904.t1 | MTR_5g023660 | 91.257 | 835 | 64 | 4 | 1 | 826 | 1 | 835 | 0.0 | 1527 |
| MS.gene76904.t1 | MTR_5g023660 | 90.647 | 834 | 66 | 4 | 1 | 826 | 1 | 830 | 0.0 | 1521 |
| MS.gene76904.t1 | MTR_4g017850 | 79.621 | 844 | 154 | 7 | 1 | 827 | 1 | 843 | 0.0 | 1365 |
| MS.gene76904.t1 | MTR_6g037900 | 72.611 | 858 | 189 | 8 | 1 | 827 | 1 | 843 | 0.0 | 1241 |
| MS.gene76904.t1 | MTR_6g088715 | 55.243 | 782 | 313 | 11 | 57 | 811 | 146 | 917 | 0.0 | 874 |
| MS.gene76904.t1 | MTR_8g071100 | 51.229 | 773 | 351 | 10 | 57 | 810 | 194 | 959 | 0.0 | 793 |
| MS.gene76904.t1 | MTR_5g066780 | 47.730 | 771 | 275 | 13 | 57 | 811 | 123 | 781 | 0.0 | 667 |
| MS.gene76904.t1 | MTR_5g066830 | 65.318 | 173 | 60 | 0 | 639 | 811 | 1 | 173 | 4.13e-72 | 234 |
| MS.gene76904.t1 | MTR_8g062550 | 35.872 | 407 | 187 | 12 | 118 | 516 | 42 | 382 | 1.24e-61 | 214 |
| MS.gene76904.t1 | MTR_2g046020 | 33.777 | 376 | 205 | 8 | 429 | 794 | 1232 | 1573 | 2.80e-55 | 208 |
| MS.gene76904.t1 | MTR_6g065580 | 33.777 | 376 | 205 | 8 | 429 | 794 | 1206 | 1547 | 6.18e-54 | 204 |
| MS.gene76904.t1 | MTR_0331s0010 | 72.727 | 66 | 17 | 1 | 561 | 625 | 28 | 93 | 7.17e-22 | 92.0 |
| MS.gene76904.t1 | MTR_7g047650 | 43.564 | 101 | 38 | 5 | 262 | 358 | 44 | 129 | 3.11e-14 | 70.9 |
| MS.gene76904.t1 | MTR_5g074180 | 31.383 | 188 | 73 | 6 | 113 | 300 | 11 | 142 | 7.16e-14 | 70.1 |
| MS.gene76904.t1 | MTR_2g054840 | 36.364 | 88 | 56 | 0 | 544 | 631 | 15 | 102 | 5.94e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76904.t1 | AT1G80740 | 51.925 | 805 | 332 | 11 | 42 | 814 | 4 | 785 | 0.0 | 822 |
| MS.gene76904.t1 | AT1G69770 | 51.790 | 838 | 359 | 14 | 1 | 807 | 1 | 824 | 0.0 | 819 |
| MS.gene76904.t1 | AT4G19020 | 51.105 | 769 | 351 | 7 | 57 | 810 | 523 | 1281 | 0.0 | 798 |
| MS.gene76904.t1 | AT4G19020 | 51.105 | 769 | 351 | 7 | 57 | 810 | 475 | 1233 | 0.0 | 798 |
| MS.gene76904.t1 | AT4G14140 | 35.310 | 371 | 206 | 7 | 429 | 794 | 1168 | 1509 | 1.12e-56 | 212 |
| MS.gene76904.t1 | AT4G14140 | 35.310 | 371 | 206 | 7 | 429 | 794 | 1168 | 1509 | 1.12e-56 | 212 |
| MS.gene76904.t1 | AT4G14140 | 34.933 | 375 | 202 | 8 | 429 | 794 | 1194 | 1535 | 1.86e-56 | 211 |
| MS.gene76904.t1 | AT4G08990 | 35.561 | 374 | 201 | 9 | 429 | 794 | 1161 | 1502 | 7.59e-55 | 206 |
| MS.gene76904.t1 | AT4G13610 | 34.409 | 372 | 196 | 8 | 429 | 794 | 1070 | 1399 | 1.05e-53 | 203 |
| MS.gene76904.t1 | AT5G49160 | 32.891 | 377 | 207 | 9 | 429 | 794 | 1095 | 1436 | 3.30e-50 | 192 |
| MS.gene76904.t1 | AT5G49160 | 32.891 | 377 | 207 | 9 | 429 | 794 | 1183 | 1524 | 3.62e-50 | 192 |
Find 189 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTTGCTGGTGGGTTTC+TGG | 0.008640 | 7.2:+91252287 | MS.gene76904:CDS |
| TGCTTTGGAGCATCTATTTC+TGG | 0.083264 | 7.2:+91248060 | MS.gene76904:CDS |
| ACTTTACTGGATTTGTATTC+TGG | 0.102309 | 7.2:+91248012 | MS.gene76904:CDS |
| CCAAAACGTACGTGAGTTTC+TGG | 0.160369 | 7.2:-91248251 | None:intergenic |
| TGAAGTCTCACTTTCTATTT+TGG | 0.212259 | 7.2:-91247890 | None:intergenic |
| TAGACAACTTGGGTACTTAA+AGG | 0.288833 | 7.2:-91254888 | None:intergenic |
| TGTGAGAAGTTTGTACTAAA+TGG | 0.291004 | 7.2:+91248433 | MS.gene76904:CDS |
| ACATTAGGTTTGGCAATTCT+AGG | 0.297456 | 7.2:+91254833 | MS.gene76904:CDS |
| TAGGCCTGAGTGGACTTTAC+TGG | 0.302719 | 7.2:+91247999 | MS.gene76904:CDS |
| AGGAACGGCGTCGTCTTGTT+TGG | 0.308743 | 7.2:-91246078 | None:intergenic |
| CTTGCCCTTGGATACACATT+AGG | 0.317533 | 7.2:+91254818 | MS.gene76904:CDS |
| TTCGATTTCTTTCTTCTAGA+AGG | 0.320245 | 7.2:-91246164 | None:intergenic |
| TTCTTCAACCGGAGATTGTT+TGG | 0.326628 | 7.2:-91246123 | None:intergenic |
| AAATTTGCTGGTGGGTTTCT+GGG | 0.327523 | 7.2:+91252288 | MS.gene76904:CDS |
| CCAGACTGCTATAAGCTTTG+TGG | 0.329709 | 7.2:+91254240 | MS.gene76904:CDS |
| TCAACACATTCAAATGAATC+TGG | 0.332133 | 7.2:+91247910 | MS.gene76904:CDS |
| AACATTTGAGAAAGTTATAT+AGG | 0.344153 | 7.2:-91247753 | None:intergenic |
| CATCCGAGCTTGATAATTCA+TGG | 0.344162 | 7.2:-91252337 | None:intergenic |
| ATCCTTTAGATTGTTTAGTT+AGG | 0.347736 | 7.2:+91247546 | MS.gene76904:CDS |
| CATATGGCCTTCCTCAATTT+CGG | 0.349601 | 7.2:+91252379 | MS.gene76904:CDS |
| CCACCTTGTCAAGGTGTTAG+TGG | 0.350266 | 7.2:+91252135 | MS.gene76904:CDS |
| ATGTCCACTGGTCTTTGCTT+TGG | 0.352341 | 7.2:+91248045 | MS.gene76904:CDS |
| AGATATGGAACCTTCTCCTT+TGG | 0.356040 | 7.2:-91253423 | None:intergenic |
| CTTTACTGGATTTGTATTCT+GGG | 0.362248 | 7.2:+91248013 | MS.gene76904:CDS |
| TTAGTGGTTTCAATCGCTTC+AGG | 0.364770 | 7.2:+91252151 | MS.gene76904:CDS |
| GTCAAATTAAAGAATGTAAT+AGG | 0.367477 | 7.2:+91247980 | MS.gene76904:CDS |
| GGGCTCCCATGTATCATAAC+TGG | 0.370498 | 7.2:-91248727 | None:intergenic |
| TATCCAAGGGCAAGGGCAAC+AGG | 0.371847 | 7.2:-91254809 | None:intergenic |
| GTTCCTGTTGCCCTTGCCCT+TGG | 0.380094 | 7.2:+91254806 | MS.gene76904:CDS |
| TTCAATCTTTACCGTGTCTT+CGG | 0.381407 | 7.2:-91247372 | None:intergenic |
| ACCTGACTCTGAGGTATTTG+AGG | 0.384130 | 7.2:+91248522 | MS.gene76904:CDS |
| AACACATACCTCTGTTTGAC+AGG | 0.386966 | 7.2:-91254264 | None:intergenic |
| AAAAGAGTGTATCTAAAATC+TGG | 0.397497 | 7.2:+91253590 | MS.gene76904:CDS |
| TGTGCTTCATCAGCCGGAAT+AGG | 0.400179 | 7.2:-91246230 | None:intergenic |
| ACAAATGTCATAGCATAATC+TGG | 0.400607 | 7.2:-91253707 | None:intergenic |
| TCCAGAGATGGTGAATTATT+CGG | 0.404648 | 7.2:+91253311 | MS.gene76904:intron |
| AGACAACTTGGGTACTTAAA+GGG | 0.412259 | 7.2:-91254887 | None:intergenic |
| CCTTGGATACACATTAGGTT+TGG | 0.421810 | 7.2:+91254823 | MS.gene76904:CDS |
| TGGCCAAGGCATTATACCTT+GGG | 0.423475 | 7.2:+91252761 | MS.gene76904:CDS |
| ACATTTGAGAAAGTTATATA+GGG | 0.426320 | 7.2:-91247752 | None:intergenic |
| GCTGAATACAACAGGCCATT+TGG | 0.427862 | 7.2:+91253825 | MS.gene76904:intron |
| ATGATGGCTGCAGGGTCATA+TGG | 0.428980 | 7.2:+91252363 | MS.gene76904:CDS |
| GTAAAATATTGTTCTTCATC+GGG | 0.431939 | 7.2:-91247329 | None:intergenic |
| TTCCTAACTAAACAATCTAA+AGG | 0.433146 | 7.2:-91247548 | None:intergenic |
| TATCGTGAAGCGAAGGTTGA+TGG | 0.441672 | 7.2:+91246427 | MS.gene76904:CDS |
| CTTCGTCGGAGAACCTATTC+CGG | 0.445832 | 7.2:+91246217 | MS.gene76904:CDS |
| ATGAGTTGGTAACGGATATG+AGG | 0.447163 | 7.2:-91252551 | None:intergenic |
| TAAAGAAAACAAGGTGGAAT+GGG | 0.451055 | 7.2:+91253556 | MS.gene76904:CDS |
| GAAACCAGTTCTTCTTCAAC+CGG | 0.452190 | 7.2:-91246134 | None:intergenic |
| CTAAGAACTCTGTCTTGGTC+TGG | 0.452322 | 7.2:-91254186 | None:intergenic |
| AGTAAAATATTGTTCTTCAT+CGG | 0.453084 | 7.2:-91247330 | None:intergenic |
| CTGGATTTGTATTCTGGGTG+TGG | 0.458568 | 7.2:+91248018 | MS.gene76904:CDS |
| CTGATGAAGCACAAAAGAAA+TGG | 0.459268 | 7.2:+91246240 | MS.gene76904:CDS |
| TTTCTTACTTCAAACTCAGT+AGG | 0.462655 | 7.2:-91252598 | None:intergenic |
| ATCTCCGGTTGAAGAAGAAC+TGG | 0.462907 | 7.2:+91246130 | MS.gene76904:CDS |
| CCGTTCCTCATTCTTCTAAA+CGG | 0.463899 | 7.2:+91246093 | MS.gene76904:CDS |
| CTCAGTAGGGATGACTGATC+TGG | 0.468959 | 7.2:-91252584 | None:intergenic |
| CGAATAACAACCTGGTTATG+AGG | 0.471305 | 7.2:-91253897 | None:intergenic |
| ATGCTATGACATTTGTTCAC+GGG | 0.472626 | 7.2:+91253714 | MS.gene76904:CDS |
| TTTCTGGGGCGTTATGCTGT+AGG | 0.473896 | 7.2:+91252303 | MS.gene76904:CDS |
| CGGATGGGAATGATGGCTGC+AGG | 0.474115 | 7.2:+91252354 | MS.gene76904:CDS |
| AAAGGACGGGCTAGACAACT+TGG | 0.474566 | 7.2:-91254899 | None:intergenic |
| ACAGGCCATTTGGTCGACTT+TGG | 0.475021 | 7.2:+91253835 | MS.gene76904:intron |
| AATATACCTCAAGCCCTCAA+TGG | 0.475252 | 7.2:-91248748 | None:intergenic |
| ACCTCAAATACCTCAGAGTC+AGG | 0.475532 | 7.2:-91248523 | None:intergenic |
| TTCGGCTCTGTAAAACCATT+GGG | 0.476357 | 7.2:-91247354 | None:intergenic |
| CCACAAAGCTTATAGCAGTC+TGG | 0.481850 | 7.2:-91254240 | None:intergenic |
| ACGATTCCAGTTATGATACA+TGG | 0.482110 | 7.2:+91248721 | MS.gene76904:CDS |
| TGTGTGTGTGCAGGTGATTA+AGG | 0.483671 | 7.2:+91247466 | MS.gene76904:intron |
| GCCATTTGGTCGACTTTGGT+GGG | 0.487889 | 7.2:+91253839 | MS.gene76904:CDS |
| CGAGAGAATGCAAGGCTACA+AGG | 0.488910 | 7.2:+91254213 | MS.gene76904:CDS |
| TTTATCAGCTGCATGGACAT+TGG | 0.493693 | 7.2:-91247935 | None:intergenic |
| TTCTTACTTCAAACTCAGTA+GGG | 0.495616 | 7.2:-91252597 | None:intergenic |
| ATATACCTCAAGCCCTCAAT+GGG | 0.497888 | 7.2:-91248747 | None:intergenic |
| CTTCGGCTCTGTAAAACCAT+TGG | 0.499873 | 7.2:-91247355 | None:intergenic |
| TCATCATCAACTACATCTAA+AGG | 0.502737 | 7.2:-91254917 | None:intergenic |
| GGCCATTTGGTCGACTTTGG+TGG | 0.503320 | 7.2:+91253838 | MS.gene76904:intron |
| GATACATGGGAGCCCATTGA+GGG | 0.504051 | 7.2:+91248735 | MS.gene76904:CDS |
| TGCATATTCATTTATATCCA+CGG | 0.506267 | 7.2:-91248204 | None:intergenic |
| CACAAAAGAAATGGCCTCAC+CGG | 0.507084 | 7.2:+91246249 | MS.gene76904:CDS |
| GAACTCTGTCTTGGTCTGGA+TGG | 0.507573 | 7.2:-91254182 | None:intergenic |
| AAAGAAATCGAAGCAATCTT+CGG | 0.508099 | 7.2:+91246175 | MS.gene76904:CDS |
| GGGTGTGGAGCTATGTCCAC+TGG | 0.509075 | 7.2:+91248033 | MS.gene76904:CDS |
| TCATCGGTGTTTAATTTCAA+AGG | 0.509674 | 7.2:-91253378 | None:intergenic |
| TCAGCAACTAATTGTTTACA+TGG | 0.512928 | 7.2:+91252206 | MS.gene76904:CDS |
| CACCACAAATAAAATCAGCT+TGG | 0.514779 | 7.2:-91252110 | None:intergenic |
| TTAAAGAAAACAAGGTGGAA+TGG | 0.515036 | 7.2:+91253555 | MS.gene76904:CDS |
| TCCGACGATGCATGCTTCGT+CGG | 0.515548 | 7.2:+91246203 | MS.gene76904:CDS |
| TTAGATGTAGTTGATGATGA+TGG | 0.517459 | 7.2:+91254920 | MS.gene76904:CDS |
| GTCCCCAAGGTATAATGCCT+TGG | 0.517822 | 7.2:-91252764 | None:intergenic |
| ATCTTTCAGGTGCAATGGAA+GGG | 0.518544 | 7.2:+91248696 | MS.gene76904:intron |
| TCAAGCTCGGATGGGAATGA+TGG | 0.519547 | 7.2:+91252347 | MS.gene76904:CDS |
| CTGGCCAAGGCATTATACCT+TGG | 0.521309 | 7.2:+91252760 | MS.gene76904:CDS |
| CACTAATGAAAAGTGTCAGC+TGG | 0.523124 | 7.2:+91252741 | MS.gene76904:CDS |
| AAAACACGCATCCGAAATTG+AGG | 0.524141 | 7.2:-91252390 | None:intergenic |
| CAAAACGTACGTGAGTTTCT+GGG | 0.525514 | 7.2:-91248250 | None:intergenic |
| CAACACATTCAAATGAATCT+GGG | 0.527060 | 7.2:+91247911 | MS.gene76904:CDS |
| TTATAATCTTTCAGGTGCAA+TGG | 0.528275 | 7.2:+91248691 | MS.gene76904:intron |
| GAAGCCTAAGTATGTTCTCA+TGG | 0.528299 | 7.2:+91252245 | MS.gene76904:CDS |
| AACAACCTGGTTATGAGGCT+CGG | 0.528328 | 7.2:-91253892 | None:intergenic |
| AATCTTTCAGGTGCAATGGA+AGG | 0.528541 | 7.2:+91248695 | MS.gene76904:intron |
| TCCCACCAAAGTCGACCAAA+TGG | 0.528934 | 7.2:-91253840 | None:intergenic |
| CATGAATTATCAAGCTCGGA+TGG | 0.529786 | 7.2:+91252338 | MS.gene76904:CDS |
| GAAGAAAGCCAAACAATCTC+CGG | 0.530553 | 7.2:+91246115 | MS.gene76904:CDS |
| ACAGATTCTGATTTGAATGC+TGG | 0.534166 | 7.2:+91248466 | MS.gene76904:CDS |
| ATCAACTACATCTAAAGGAC+GGG | 0.535962 | 7.2:-91254912 | None:intergenic |
| CCAAACCTAATGTGTATCCA+AGG | 0.536081 | 7.2:-91254823 | None:intergenic |
| GAGTGAGGATGAAAGTTTGA+AGG | 0.536508 | 7.2:+91246393 | MS.gene76904:CDS |
| TTCTGGCATTAAGCTTGTCA+CGG | 0.537807 | 7.2:+91248077 | MS.gene76904:CDS |
| TTGCCACATTCCAAAGGAGA+AGG | 0.538842 | 7.2:+91253413 | MS.gene76904:CDS |
| TTCTTCCGTTTAGAAGAATG+AGG | 0.540063 | 7.2:-91246098 | None:intergenic |
| ATCGTGAAGCGAAGGTTGAT+GGG | 0.542081 | 7.2:+91246428 | MS.gene76904:CDS |
| TATATCAGATTAAAGAGAAG+TGG | 0.544554 | 7.2:+91252974 | MS.gene76904:CDS |
| GAATGCTAAGAACTCTGTCT+TGG | 0.555016 | 7.2:-91254191 | None:intergenic |
| CTGGATTCAACCTCATGAGT+TGG | 0.555366 | 7.2:-91252565 | None:intergenic |
| GAACCTTCTCCTTTGGAATG+TGG | 0.555858 | 7.2:-91253416 | None:intergenic |
| GTGGTGAGACTTACAGGAAG+AGG | 0.556985 | 7.2:-91251983 | None:intergenic |
| ATGTGCAGGTACATGCAAGT+TGG | 0.560046 | 7.2:+91254770 | MS.gene76904:intron |
| CTCACTCGTTCTTAGTGTAC+CGG | 0.561833 | 7.2:-91246268 | None:intergenic |
| TCTAAAATCTGGAAAGCCGT+TGG | 0.563755 | 7.2:+91253601 | MS.gene76904:CDS |
| AGACTACTCTCTATTTGCTA+TGG | 0.564668 | 7.2:+91248550 | MS.gene76904:CDS |
| AGCGATGATGAAAAGAGCTA+CGG | 0.565697 | 7.2:+91252923 | MS.gene76904:CDS |
| AAGGGCCGAGCCTCATAACC+AGG | 0.568054 | 7.2:+91253887 | MS.gene76904:CDS |
| ATGAATTATCAAGCTCGGAT+GGG | 0.571223 | 7.2:+91252339 | MS.gene76904:CDS |
| TGTGGTGGGCCACCTTGTCA+AGG | 0.574035 | 7.2:+91252126 | MS.gene76904:CDS |
| TTGTGTCCACTGTTGTAACA+AGG | 0.575348 | 7.2:+91253868 | MS.gene76904:CDS |
| TGAAAAGTGTCAGCTGGCCA+AGG | 0.575456 | 7.2:+91252747 | MS.gene76904:CDS |
| AATTTGCTGGTGGGTTTCTG+GGG | 0.576721 | 7.2:+91252289 | MS.gene76904:CDS |
| TTGAATGCTGGTGAAGAAGC+TGG | 0.577481 | 7.2:+91248478 | MS.gene76904:CDS |
| TTCTCCATGAGAACATACTT+AGG | 0.578027 | 7.2:-91252249 | None:intergenic |
| CGCAATTGATGATCTCCCAC+CGG | 0.580227 | 7.2:+91252786 | MS.gene76904:CDS |
| CCTACTCTGAAATATAGTCC+TGG | 0.581965 | 7.2:-91248595 | None:intergenic |
| GGACTACATTGCTAAGATTG+TGG | 0.583306 | 7.2:+91247292 | MS.gene76904:CDS |
| CTAATGTGTATCCAAGGGCA+AGG | 0.584216 | 7.2:-91254817 | None:intergenic |
| TGATACATGGGAGCCCATTG+AGG | 0.584875 | 7.2:+91248734 | MS.gene76904:CDS |
| GACAACTTGGGTACTTAAAG+GGG | 0.589664 | 7.2:-91254886 | None:intergenic |
| TTAGCATTCGAGAGAATGCA+AGG | 0.591436 | 7.2:+91254205 | MS.gene76904:CDS |
| GCGATGATGAAAAGAGCTAC+GGG | 0.591951 | 7.2:+91252924 | MS.gene76904:CDS |
| GCAAACTCTCTCATAGTCAT+CGG | 0.593163 | 7.2:-91253394 | None:intergenic |
| TCCGACGAAGCATGCATCGT+CGG | 0.593618 | 7.2:-91246204 | None:intergenic |
| TTTAAGTCTACTGAAAGAGT+GGG | 0.594108 | 7.2:+91248402 | MS.gene76904:CDS |
| TGACTTGAAGAGATGGGCCG+TGG | 0.594840 | 7.2:+91248187 | MS.gene76904:intron |
| AGTTGTCAAAGGACTGTCAT+CGG | 0.595633 | 7.2:-91254861 | None:intergenic |
| TGGCCATGAATTATCAAGCT+CGG | 0.597417 | 7.2:+91252334 | MS.gene76904:CDS |
| CGATTCCAGTTATGATACAT+GGG | 0.597731 | 7.2:+91248722 | MS.gene76904:CDS |
| GGGAGCCCATTGAGGGCTTG+AGG | 0.601086 | 7.2:+91248742 | MS.gene76904:CDS |
| GATAATTCATGGCCACTAGA+CGG | 0.606811 | 7.2:-91252326 | None:intergenic |
| TGCAGGTGATTAAGGACCAT+GGG | 0.609611 | 7.2:+91247474 | MS.gene76904:intron |
| TGAGTTGGTAACGGATATGA+GGG | 0.612406 | 7.2:-91252550 | None:intergenic |
| TATGCTATGACATTTGTTCA+CGG | 0.613180 | 7.2:+91253713 | MS.gene76904:CDS |
| GGCAAACTTCAGGGACCTCG+AGG | 0.614201 | 7.2:+91253523 | MS.gene76904:CDS |
| GATCATCAATTGCGTCCCCA+AGG | 0.614386 | 7.2:-91252777 | None:intergenic |
| GTTTCACTATCGTGAAGCGA+AGG | 0.614568 | 7.2:+91246420 | MS.gene76904:CDS |
| GAGAGTTTGCCACATTCCAA+AGG | 0.615917 | 7.2:+91253407 | MS.gene76904:CDS |
| CATCAACTACATCTAAAGGA+CGG | 0.616327 | 7.2:-91254913 | None:intergenic |
| AATTCAGGTGAGGAATGAGC+CGG | 0.616828 | 7.2:+91248369 | MS.gene76904:intron |
| ACTTTCTCAAATGTTGACAA+TGG | 0.620113 | 7.2:+91247761 | MS.gene76904:CDS |
| TCAACCTCATGAGTTGGTAA+CGG | 0.622459 | 7.2:-91252559 | None:intergenic |
| TTATGCTGTAGGCCGTCTAG+TGG | 0.625272 | 7.2:+91252314 | MS.gene76904:CDS |
| TGATCATACAGCATACCACT+TGG | 0.627170 | 7.2:-91253351 | None:intergenic |
| CACGCATCCGAAATTGAGGA+AGG | 0.629581 | 7.2:-91252386 | None:intergenic |
| GCAAACTTCAGGGACCTCGA+GGG | 0.637506 | 7.2:+91253524 | MS.gene76904:CDS |
| CAAACCTAATGTGTATCCAA+GGG | 0.638670 | 7.2:-91254822 | None:intergenic |
| GGATGGGAATGATGGCTGCA+GGG | 0.639348 | 7.2:+91252355 | MS.gene76904:CDS |
| TAATGTGTATCCAAGGGCAA+GGG | 0.640727 | 7.2:-91254816 | None:intergenic |
| AAGAATGTAATAGGCCTGAG+TGG | 0.644520 | 7.2:+91247989 | MS.gene76904:CDS |
| TGCTCCAAAGCAAAGACCAG+TGG | 0.647355 | 7.2:-91248049 | None:intergenic |
| AAATCCAGTAAAGTCCACTC+AGG | 0.651482 | 7.2:-91248003 | None:intergenic |
| CCGTTTAGAAGAATGAGGAA+CGG | 0.653146 | 7.2:-91246093 | None:intergenic |
| AGATGATTCACCTGACTCTG+AGG | 0.655360 | 7.2:+91248513 | MS.gene76904:CDS |
| TGTGTCCACTGTTGTAACAA+GGG | 0.656136 | 7.2:+91253869 | MS.gene76904:CDS |
| TTAAAGGGGAGAGTTGTCAA+AGG | 0.658649 | 7.2:-91254872 | None:intergenic |
| ACACATACCTCTGTTTGACA+GGG | 0.662004 | 7.2:-91254263 | None:intergenic |
| AAGGACGGGCTAGACAACTT+GGG | 0.665885 | 7.2:-91254898 | None:intergenic |
| ATATCCGTTACCAACTCATG+AGG | 0.669953 | 7.2:+91252555 | MS.gene76904:CDS |
| ATGTCAAAATAGAATTCACA+AGG | 0.670234 | 7.2:-91247716 | None:intergenic |
| CTCGGCCCTTGTTACAACAG+TGG | 0.671085 | 7.2:-91253874 | None:intergenic |
| GTGCAGGTGATTAAGGACCA+TGG | 0.674534 | 7.2:+91247473 | MS.gene76904:intron |
| GGCCAAGGCATTATACCTTG+GGG | 0.678055 | 7.2:+91252762 | MS.gene76904:CDS |
| CATATATACATACTTAGAGG+AGG | 0.681619 | 7.2:-91253738 | None:intergenic |
| CCACTAACACCTTGACAAGG+TGG | 0.683957 | 7.2:-91252135 | None:intergenic |
| GACTCTCAAAGTGCACCAAG+TGG | 0.685496 | 7.2:+91253336 | MS.gene76904:CDS |
| TTTGTGGCCCTGTCAAACAG+AGG | 0.688111 | 7.2:+91254256 | MS.gene76904:CDS |
| TCAAAATAGAATTCACAAGG+AGG | 0.689598 | 7.2:-91247713 | None:intergenic |
| TGTGCTAGTTAAAGAAAACA+AGG | 0.696627 | 7.2:+91253547 | MS.gene76904:CDS |
| CTTTAACTAGCACACCCTCG+AGG | 0.704914 | 7.2:-91253538 | None:intergenic |
| GCTAGTTAAAGAAAACAAGG+TGG | 0.715923 | 7.2:+91253550 | MS.gene76904:CDS |
| TCGTTCTTAGTGTACCGGTG+AGG | 0.720228 | 7.2:-91246263 | None:intergenic |
| AAACCACTAACACCTTGACA+AGG | 0.729461 | 7.2:-91252138 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 91246050 | 91254952 | 91246050 | ID=MS.gene76904 |
| chr7.2 | mRNA | 91246050 | 91254952 | 91246050 | ID=MS.gene76904.t1;Parent=MS.gene76904 |
| chr7.2 | exon | 91246050 | 91246285 | 91246050 | ID=MS.gene76904.t1.exon1;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91246050 | 91246285 | 91246050 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91246387 | 91246486 | 91246387 | ID=MS.gene76904.t1.exon2;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91246387 | 91246486 | 91246387 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91247275 | 91247382 | 91247275 | ID=MS.gene76904.t1.exon3;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91247275 | 91247382 | 91247275 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91247479 | 91247598 | 91247479 | ID=MS.gene76904.t1.exon4;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91247479 | 91247598 | 91247479 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91247692 | 91247782 | 91247692 | ID=MS.gene76904.t1.exon5;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91247692 | 91247782 | 91247692 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91247887 | 91248098 | 91247887 | ID=MS.gene76904.t1.exon6;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91247887 | 91248098 | 91247887 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91248197 | 91248262 | 91248197 | ID=MS.gene76904.t1.exon7;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91248197 | 91248262 | 91248197 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91248376 | 91248612 | 91248376 | ID=MS.gene76904.t1.exon8;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91248376 | 91248612 | 91248376 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91248705 | 91248763 | 91248705 | ID=MS.gene76904.t1.exon9;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91248705 | 91248763 | 91248705 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91251925 | 91251991 | 91251925 | ID=MS.gene76904.t1.exon10;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91251925 | 91251991 | 91251925 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91252108 | 91252437 | 91252108 | ID=MS.gene76904.t1.exon11;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91252108 | 91252437 | 91252108 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91252544 | 91252612 | 91252544 | ID=MS.gene76904.t1.exon12;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91252544 | 91252612 | 91252544 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91252721 | 91252807 | 91252721 | ID=MS.gene76904.t1.exon13;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91252721 | 91252807 | 91252721 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91252908 | 91252995 | 91252908 | ID=MS.gene76904.t1.exon14;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91252908 | 91252995 | 91252908 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91253316 | 91253434 | 91253316 | ID=MS.gene76904.t1.exon15;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91253316 | 91253434 | 91253316 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91253521 | 91253622 | 91253521 | ID=MS.gene76904.t1.exon16;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91253521 | 91253622 | 91253521 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91253704 | 91253747 | 91253704 | ID=MS.gene76904.t1.exon17;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91253704 | 91253747 | 91253704 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91253839 | 91253908 | 91253839 | ID=MS.gene76904.t1.exon18;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91253839 | 91253908 | 91253839 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91254174 | 91254277 | 91254174 | ID=MS.gene76904.t1.exon19;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91254174 | 91254277 | 91254174 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| chr7.2 | exon | 91254778 | 91254952 | 91254778 | ID=MS.gene76904.t1.exon20;Parent=MS.gene76904.t1 |
| chr7.2 | CDS | 91254778 | 91254952 | 91254778 | ID=cds.MS.gene76904.t1;Parent=MS.gene76904.t1 |
| Gene Sequence |
| Protein sequence |
