Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77039.t1 | RHN59424.1 | 95.2 | 558 | 23 | 2 | 1 | 558 | 66 | 619 | 9.20E-209 | 736.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77039.t1 | F4ISY0 | 38.1 | 536 | 260 | 10 | 2 | 524 | 3 | 479 | 4.5e-47 | 190.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77039.t1 | A0A072UHR5 | 95.2 | 558 | 23 | 2 | 1 | 558 | 1 | 554 | 6.6e-209 | 736.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052732 | MS.gene77039 | 0.804734 | 1.87E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene77039 | 0.80024 | 1.58E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77039.t1 | MTR_4g029090 | 95.520 | 558 | 21 | 2 | 1 | 558 | 1 | 554 | 0.0 | 1069 |
| MS.gene77039.t1 | MTR_7g072550 | 64.000 | 575 | 164 | 13 | 11 | 558 | 12 | 570 | 0.0 | 637 |
| MS.gene77039.t1 | MTR_3g072350 | 36.500 | 600 | 287 | 13 | 12 | 551 | 13 | 578 | 6.09e-79 | 259 |
| MS.gene77039.t1 | MTR_5g083980 | 36.804 | 557 | 287 | 14 | 18 | 551 | 20 | 534 | 2.11e-67 | 228 |
| MS.gene77039.t1 | MTR_3g072350 | 37.525 | 501 | 237 | 11 | 12 | 449 | 13 | 500 | 3.52e-65 | 221 |
| MS.gene77039.t1 | MTR_3g101660 | 31.173 | 324 | 212 | 3 | 114 | 427 | 534 | 856 | 3.27e-33 | 135 |
| MS.gene77039.t1 | MTR_1g019490 | 31.677 | 322 | 204 | 4 | 111 | 427 | 528 | 838 | 1.56e-26 | 115 |
| MS.gene77039.t1 | MTR_8g070840 | 29.975 | 397 | 214 | 9 | 73 | 437 | 210 | 574 | 2.75e-18 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77039.t1 | AT2G38370 | 46.000 | 550 | 225 | 14 | 12 | 544 | 10 | 504 | 1.22e-115 | 353 |
| MS.gene77039.t1 | AT2G38370 | 46.000 | 550 | 225 | 14 | 12 | 544 | 27 | 521 | 2.09e-115 | 353 |
| MS.gene77039.t1 | AT2G40480 | 38.129 | 556 | 255 | 18 | 5 | 551 | 40 | 515 | 1.02e-71 | 239 |
| MS.gene77039.t1 | AT3G51720 | 36.654 | 532 | 183 | 13 | 18 | 544 | 6 | 388 | 2.04e-67 | 224 |
| MS.gene77039.t1 | AT3G56270 | 34.698 | 464 | 221 | 13 | 16 | 476 | 36 | 420 | 8.63e-43 | 159 |
| MS.gene77039.t1 | AT2G26570 | 33.133 | 332 | 208 | 5 | 100 | 427 | 408 | 729 | 1.23e-33 | 136 |
| MS.gene77039.t1 | AT2G26570 | 33.133 | 332 | 208 | 5 | 100 | 427 | 408 | 729 | 1.23e-33 | 136 |
| MS.gene77039.t1 | AT4G33390 | 35.897 | 273 | 170 | 2 | 168 | 436 | 459 | 730 | 2.23e-27 | 117 |
| MS.gene77039.t1 | AT5G42880 | 31.203 | 266 | 158 | 4 | 168 | 428 | 423 | 668 | 1.75e-21 | 99.4 |
| MS.gene77039.t1 | AT1G45545 | 29.572 | 257 | 173 | 4 | 176 | 426 | 424 | 678 | 7.82e-17 | 84.7 |
| MS.gene77039.t1 | AT1G45545 | 29.572 | 257 | 173 | 4 | 176 | 426 | 425 | 679 | 8.17e-17 | 84.3 |
Find 99 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCGGTTATTTGACATAAA+TGG | 0.131409 | 4.3:+70552664 | MS.gene77039:CDS |
| GGCAGAACATTTCAAGAAAA+TGG | 0.171368 | 4.3:+70552117 | MS.gene77039:CDS |
| GGTTCGGTGGTGTTGGTTAT+TGG | 0.246121 | 4.3:+70550153 | MS.gene77039:CDS |
| CGAAGCAAATGTATCGAAAA+TGG | 0.273101 | 4.3:+70552438 | MS.gene77039:CDS |
| TCTCTGGCATCATCAGTTTC+CGG | 0.279858 | 4.3:-70552756 | None:intergenic |
| TTGAAGAGGCTTTAAGAAAA+TGG | 0.291438 | 4.3:+70552569 | MS.gene77039:CDS |
| TCTGCTAAGAGAAAGAAATT+TGG | 0.309514 | 4.3:+70552919 | MS.gene77039:CDS |
| GGTGGTGAACCGGGTTGAAC+CGG | 0.321331 | 4.3:+70550055 | MS.gene77039:CDS |
| AGAGCTTGATGCTGGAAAAT+TGG | 0.325183 | 4.3:+70551553 | MS.gene77039:CDS |
| AAGAGAAAGAAATTTGGTTT+TGG | 0.353841 | 4.3:+70552925 | MS.gene77039:CDS |
| CCTGCAGTTTAAGTCTTGTT+TGG | 0.360526 | 4.3:-70552015 | None:intergenic |
| CGGTTCACCACCACCATATC+AGG | 0.360784 | 4.3:-70550044 | None:intergenic |
| TTCAATGGAAACTCCTGATA+TGG | 0.361446 | 4.3:+70550031 | None:intergenic |
| GAAGGCTCTTGAAGAAGCTT+TGG | 0.361979 | 4.3:+70552510 | MS.gene77039:CDS |
| CTCGGTTATTTGACATAAAT+GGG | 0.367655 | 4.3:+70552665 | MS.gene77039:CDS |
| TAAACCTGGATTCGCCGAAT+TGG | 0.369316 | 4.3:-70551807 | None:intergenic |
| CTCGGCAAGTGCAGCTGCTT+CGG | 0.385931 | 4.3:-70552263 | None:intergenic |
| CTGATATGGTGGTGGTGAAC+CGG | 0.395036 | 4.3:+70550045 | MS.gene77039:CDS |
| TGCCTATCAAATTCAAAAGA+TGG | 0.395264 | 4.3:-70552865 | None:intergenic |
| GGAGGAACAAGCAGTGGAAT+TGG | 0.401433 | 4.3:+70551574 | MS.gene77039:CDS |
| GTTGAATTTATGTGAAGATA+AGG | 0.409398 | 4.3:+70551730 | MS.gene77039:CDS |
| CTGAAGCTCTTTCGTAATAT+CGG | 0.411796 | 4.3:-70552080 | None:intergenic |
| AGTCGGCTTTAGAACTGGTT+TGG | 0.412171 | 4.3:-70552710 | None:intergenic |
| AGCAGCAACTAATCTAAATT+CGG | 0.419679 | 4.3:-70552212 | None:intergenic |
| CCTTCCAATTCGGCGAATCC+AGG | 0.426962 | 4.3:+70551803 | MS.gene77039:CDS |
| ATTCTGAGTTAAACTCTCTC+TGG | 0.432246 | 4.3:-70551957 | None:intergenic |
| CAGCGATATCGTTTGTAGTT+CGG | 0.432690 | 4.3:-70551868 | None:intergenic |
| AAAGAAGCTGTTACTCGGTT+CGG | 0.446194 | 4.3:+70550137 | MS.gene77039:CDS |
| GATAGAGTCGGCTTTAGAAC+TGG | 0.446529 | 4.3:-70552715 | None:intergenic |
| GCAGAACATTTCAAGAAAAT+GGG | 0.446538 | 4.3:+70552118 | MS.gene77039:CDS |
| ACGAAAGAATCTCGATGAAA+AGG | 0.462368 | 4.3:+70552800 | MS.gene77039:CDS |
| CATCACCTCAAGTTCAAAGT+TGG | 0.465116 | 4.3:-70552991 | None:intergenic |
| ATCCCACCTTCAAACTTCTC+TGG | 0.472004 | 4.3:-70552772 | None:intergenic |
| GTTACTCGGTTCGGTGGTGT+TGG | 0.473117 | 4.3:+70550146 | MS.gene77039:CDS |
| TGATGATTATGATTAAGAAC+AGG | 0.473381 | 4.3:-70550179 | None:intergenic |
| ACGAGCTTATCGTTAAAGAA+AGG | 0.478183 | 4.3:+70551600 | MS.gene77039:CDS |
| AGAGTAGAGGCTGCAAATAG+AGG | 0.481776 | 4.3:+70552535 | MS.gene77039:CDS |
| AAACCGTTCTCCTTCGAACC+CGG | 0.483931 | 4.3:-70550074 | None:intergenic |
| AGGGAAGTTAGTAGTTGAAG+AGG | 0.491762 | 4.3:+70552555 | MS.gene77039:CDS |
| GAGTCGTGTTCCTTCCAATT+CGG | 0.497047 | 4.3:+70551793 | MS.gene77039:CDS |
| CGAGCTTATCGTTAAAGAAA+GGG | 0.500439 | 4.3:+70551601 | MS.gene77039:CDS |
| TATTAACCTCATTATTCCTC+AGG | 0.502714 | 4.3:+70550217 | MS.gene77039:CDS |
| GTGGTGAACCGGGTTGAACC+GGG | 0.503220 | 4.3:+70550056 | MS.gene77039:CDS |
| AGTTCCCTTAAAATTAAACC+TGG | 0.508559 | 4.3:-70551821 | None:intergenic |
| AACACAGAAGAGCTTGATGC+TGG | 0.508566 | 4.3:+70551545 | MS.gene77039:CDS |
| GATGAAAAGGAAAGTGTCGT+TGG | 0.508711 | 4.3:+70552813 | MS.gene77039:CDS |
| CCGGGTTGAACCGGGTTCGA+AGG | 0.523792 | 4.3:+70550064 | MS.gene77039:CDS |
| GTAAAATGAAGGAAGCTGCT+AGG | 0.524760 | 4.3:+70552236 | MS.gene77039:CDS |
| CGCTGATGTTCGAGTTTCTG+TGG | 0.525095 | 4.3:+70551886 | MS.gene77039:CDS |
| TAAAATGAAGGAAGCTGCTA+GGG | 0.527463 | 4.3:+70552237 | MS.gene77039:CDS |
| TGCTGAAATTGAATGTGGTT+CGG | 0.527945 | 4.3:+70552048 | MS.gene77039:CDS |
| CCTTCGAACCCGGTTCAACC+CGG | 0.529555 | 4.3:-70550064 | None:intergenic |
| CTGTTAAAGAAGCTGTTACT+CGG | 0.535629 | 4.3:+70550132 | MS.gene77039:CDS |
| GGCAAGTGCAGCTGCTTCGG+CGG | 0.535980 | 4.3:-70552260 | None:intergenic |
| ATGAAAAGGAAAGTGTCGTT+GGG | 0.538173 | 4.3:+70552814 | MS.gene77039:CDS |
| AGCTTCTTCGATAGTGAGAA+GGG | 0.538244 | 4.3:-70552642 | None:intergenic |
| TTTCTTGAAATGTTCTGCCT+CGG | 0.538325 | 4.3:-70552113 | None:intergenic |
| GCTTCTTTAACAGACTCAAA+CGG | 0.540992 | 4.3:-70550122 | None:intergenic |
| CGATAGGTCAAATATTGAGC+CGG | 0.541111 | 4.3:+70552737 | MS.gene77039:CDS |
| AGTTGCTGCTCGTAAAATGA+AGG | 0.543977 | 4.3:+70552225 | MS.gene77039:CDS |
| AAGAGTTGGAAAGTACCAAA+AGG | 0.544666 | 4.3:+70551642 | MS.gene77039:CDS |
| GCTTGATGCTGGAAAATTGG+AGG | 0.546478 | 4.3:+70551556 | MS.gene77039:CDS |
| AGAAGCCAACTTTGAACTTG+AGG | 0.546691 | 4.3:+70552986 | MS.gene77039:CDS |
| GGCGATCCGAGGGTAACAAA+AGG | 0.547667 | 4.3:+70552590 | MS.gene77039:CDS |
| GAGTAGAGGCTGCAAATAGA+GGG | 0.556599 | 4.3:+70552536 | MS.gene77039:CDS |
| AAAGCGTTATCTTATTATGA+CGG | 0.559732 | 4.3:+70552289 | MS.gene77039:CDS |
| GTGTCGTTGGGTCAGATGCT+TGG | 0.562470 | 4.3:+70552826 | MS.gene77039:CDS |
| TAGAGCATTATACTCTTCAA+AGG | 0.563624 | 4.3:-70552347 | None:intergenic |
| GATGAAGAAAAGGAAAACCA+TGG | 0.563731 | 4.3:+70551770 | MS.gene77039:CDS |
| CGAAGTTAAAACAAGCAAGA+AGG | 0.565482 | 4.3:+70552492 | MS.gene77039:CDS |
| GAGCTTCTTCGATAGTGAGA+AGG | 0.567321 | 4.3:-70552643 | None:intergenic |
| TGATATGGTGGTGGTGAACC+GGG | 0.567872 | 4.3:+70550046 | MS.gene77039:CDS |
| CCTGGATTCGCCGAATTGGA+AGG | 0.568328 | 4.3:-70551803 | None:intergenic |
| TAAATACCTGAGGAATAATG+AGG | 0.573109 | 4.3:-70550223 | None:intergenic |
| AGCTCTTTCGTAATATCGGA+AGG | 0.578196 | 4.3:-70552076 | None:intergenic |
| AGAAGCTTTGGAAAGAGTAG+AGG | 0.581826 | 4.3:+70552522 | MS.gene77039:CDS |
| ATGAAGAAAAGGAAAACCAT+GGG | 0.586803 | 4.3:+70551771 | MS.gene77039:CDS |
| GAACCGGGTTCGAAGGAGAA+CGG | 0.591915 | 4.3:+70550071 | MS.gene77039:CDS |
| CTCACTATCGAAGAAGCTCT+CGG | 0.599628 | 4.3:+70552647 | MS.gene77039:CDS |
| ATGCCAGAGAAGTTTGAAGG+TGG | 0.600167 | 4.3:+70552769 | MS.gene77039:CDS |
| TGGAAGGAACACGACTCCCA+TGG | 0.603144 | 4.3:-70551787 | None:intergenic |
| ATTTGACCTATCGATAGAGT+CGG | 0.604595 | 4.3:-70552727 | None:intergenic |
| GACTGTGTGCAAAACTGTGA+TGG | 0.605971 | 4.3:+70552313 | MS.gene77039:CDS |
| CTAAAGCCGACTCTATCGAT+AGG | 0.608619 | 4.3:+70552721 | MS.gene77039:CDS |
| AAAATTGGAGGAACAAGCAG+TGG | 0.610904 | 4.3:+70551568 | MS.gene77039:CDS |
| TTTAAGAAAATGGCGATCCG+AGG | 0.618775 | 4.3:+70552579 | MS.gene77039:CDS |
| ATGATGCCAGAGAAGTTTGA+AGG | 0.619171 | 4.3:+70552766 | MS.gene77039:CDS |
| CCAAACAAGACTTAAACTGC+AGG | 0.619705 | 4.3:+70552015 | MS.gene77039:CDS |
| GAAGCTGTTACTCGGTTCGG+TGG | 0.622084 | 4.3:+70550140 | MS.gene77039:CDS |
| TTAAGAAAATGGCGATCCGA+GGG | 0.633233 | 4.3:+70552580 | MS.gene77039:CDS |
| TCTAACATGCAAAGCTCGAG+AGG | 0.633623 | 4.3:+70552366 | MS.gene77039:CDS |
| GCTTCAGCGATTGAGTTCCG+AGG | 0.640723 | 4.3:+70552096 | MS.gene77039:CDS |
| AACAAGACTTAAACTGCAGG+TGG | 0.640787 | 4.3:+70552018 | MS.gene77039:CDS |
| GGAAACTCCTGATATGGTGG+TGG | 0.647078 | 4.3:+70550037 | MS.gene77039:CDS |
| AAAGATGCTGAAATTGAATG+TGG | 0.651183 | 4.3:+70552043 | MS.gene77039:CDS |
| ACTCAACAAGAAACTTCAGA+AGG | 0.651200 | 4.3:+70551913 | MS.gene77039:CDS |
| GAAGGAGAACGGTTTAAGAG+CGG | 0.672078 | 4.3:+70550082 | MS.gene77039:CDS |
| AATGGAAACTCCTGATATGG+TGG | 0.681888 | 4.3:+70550034 | None:intergenic |
| TGCCAGAGAAGTTTGAAGGT+GGG | 0.696821 | 4.3:+70552770 | MS.gene77039:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAATTTTTTTTTAT+TGG | + | chr4.3:70550315-70550334 | MS.gene77039:intron | 0.0% |
| !! | CATATGAAAAATAATATATT+TGG | + | chr4.3:70550547-70550566 | MS.gene77039:intron | 10.0% |
| !!! | ATTTTTGTATTTTCTAATTA+GGG | + | chr4.3:70550366-70550385 | MS.gene77039:intron | 10.0% |
| !!! | TATTTTTGTATTTTCTAATT+AGG | + | chr4.3:70550365-70550384 | MS.gene77039:intron | 10.0% |
| !! | ATACATTCATTGAAAAAATA+GGG | - | chr4.3:70551256-70551275 | None:intergenic | 15.0% |
| !! | GAAAAATAATATATTTGGAT+AGG | + | chr4.3:70550552-70550571 | MS.gene77039:intron | 15.0% |
| !!! | AAAAACCTTATGTTTTTTTT+TGG | + | chr4.3:70551403-70551422 | MS.gene77039:intron | 15.0% |
| !!! | ATGAACATAGTTTTAAATTA+TGG | - | chr4.3:70551376-70551395 | None:intergenic | 15.0% |
| !!! | TAATTTAAAACTATGTTCAT+AGG | + | chr4.3:70551376-70551395 | MS.gene77039:intron | 15.0% |
| !! | AACATAAAAATAAATACCTG+AGG | - | chr4.3:70550236-70550255 | None:intergenic | 20.0% |
| !! | AATAACAAAAATGCAAACTT+TGG | - | chr4.3:70550297-70550316 | None:intergenic | 20.0% |
| !! | CATACATTCATTGAAAAAAT+AGG | - | chr4.3:70551257-70551276 | None:intergenic | 20.0% |
| !! | GAAATCCAAAAAAAAACATA+AGG | - | chr4.3:70551411-70551430 | None:intergenic | 20.0% |
| !!! | AGAATTGATTTTATGATGTT+TGG | + | chr4.3:70550637-70550656 | MS.gene77039:intron | 20.0% |
| !!! | GAAAATGGATGTTTTAAAAA+GGG | + | chr4.3:70552453-70552472 | MS.gene77039:CDS | 20.0% |
| !!! | TTTTTTATTGGTAGTTGTTT+GGG | + | chr4.3:70550327-70550346 | MS.gene77039:intron | 20.0% |
| !!! | TTTTTTTATTGGTAGTTGTT+TGG | + | chr4.3:70550326-70550345 | MS.gene77039:intron | 20.0% |
| ! | AGATAAAAGTGAGTTATGTT+TGG | - | chr4.3:70550792-70550811 | None:intergenic | 25.0% |
| ! | CAACAATATAAACATCTTAG+AGG | - | chr4.3:70551349-70551368 | None:intergenic | 25.0% |
| ! | CTTCCAAATTATTTGTCATT+AGG | + | chr4.3:70551011-70551030 | MS.gene77039:intron | 25.0% |
| ! | GAAAAAAGAAGATGAAGAAA+AGG | + | chr4.3:70551760-70551779 | MS.gene77039:CDS | 25.0% |
| ! | GTTGAATTTATGTGAAGATA+AGG | + | chr4.3:70551730-70551749 | MS.gene77039:CDS | 25.0% |
| ! | TATGAATTATGAATGCTCTT+TGG | + | chr4.3:70551070-70551089 | MS.gene77039:intron | 25.0% |
| ! | TATGATGTTTGGATGATTTA+AGG | + | chr4.3:70550648-70550667 | MS.gene77039:intron | 25.0% |
| ! | TGATGATTATGATTAAGAAC+AGG | - | chr4.3:70550182-70550201 | None:intergenic | 25.0% |
| ! | TGGATGCATTTATGTAAAAT+TGG | - | chr4.3:70550772-70550791 | None:intergenic | 25.0% |
| ! | TGGATTTAGCAATGAAATTA+AGG | - | chr4.3:70550752-70550771 | None:intergenic | 25.0% |
| ! | TTCAAAAATAACTTCACTAG+AGG | + | chr4.3:70551982-70552001 | MS.gene77039:CDS | 25.0% |
| ! | TTCAACCTAGAAATCAAAAT+CGG | + | chr4.3:70550985-70551004 | MS.gene77039:intron | 25.0% |
| !! | AAAGCGTTATCTTATTATGA+CGG | + | chr4.3:70552289-70552308 | MS.gene77039:CDS | 25.0% |
| !! | ATAAGATAACGCTTTTATCT+CGG | - | chr4.3:70552284-70552303 | None:intergenic | 25.0% |
| !! | ATCCATCTTTTGAATTTGAT+AGG | + | chr4.3:70552863-70552882 | MS.gene77039:CDS | 25.0% |
| !! | TGTTTGATTTCAATTCTAGA+GGG | + | chr4.3:70550590-70550609 | MS.gene77039:intron | 25.0% |
| !! | TTTGGATTTCATACGTTTTT+GGG | + | chr4.3:70551421-70551440 | MS.gene77039:intron | 25.0% |
| !! | TTTTACCATGATTATTACAG+TGG | + | chr4.3:70551228-70551247 | MS.gene77039:intron | 25.0% |
| !! | TTTTGGATTTCATACGTTTT+TGG | + | chr4.3:70551420-70551439 | MS.gene77039:intron | 25.0% |
| !!! | AAGAGAAAGAAATTTGGTTT+TGG | + | chr4.3:70552925-70552944 | MS.gene77039:CDS | 25.0% |
| !!! | CGAAAATGGATGTTTTAAAA+AGG | + | chr4.3:70552452-70552471 | MS.gene77039:CDS | 25.0% |
| !!! | GAATCCAGGTTTAATTTTAA+GGG | + | chr4.3:70551817-70551836 | MS.gene77039:CDS | 25.0% |
| AAAGATGCTGAAATTGAATG+TGG | + | chr4.3:70552043-70552062 | MS.gene77039:CDS | 30.0% | |
| AAATTGCAGTCAAAATGTGA+TGG | + | chr4.3:70551294-70551313 | MS.gene77039:intron | 30.0% | |
| AATTGCAGTCAAAATGTGAT+GGG | + | chr4.3:70551295-70551314 | MS.gene77039:intron | 30.0% | |
| AGCAGCAACTAATCTAAATT+CGG | - | chr4.3:70552215-70552234 | None:intergenic | 30.0% | |
| AGTTCCCTTAAAATTAAACC+TGG | - | chr4.3:70551824-70551843 | None:intergenic | 30.0% | |
| ATGAAGAAAAGGAAAACCAT+GGG | + | chr4.3:70551771-70551790 | MS.gene77039:CDS | 30.0% | |
| CCAAATTATTTGTCATTAGG+TGG | + | chr4.3:70551014-70551033 | MS.gene77039:intron | 30.0% | |
| CCACCTAATGACAAATAATT+TGG | - | chr4.3:70551017-70551036 | None:intergenic | 30.0% | |
| CTCGGTTATTTGACATAAAT+GGG | + | chr4.3:70552665-70552684 | MS.gene77039:CDS | 30.0% | |
| GCAGAACATTTCAAGAAAAT+GGG | + | chr4.3:70552118-70552137 | MS.gene77039:CDS | 30.0% | |
| TAAATACCTGAGGAATAATG+AGG | - | chr4.3:70550226-70550245 | None:intergenic | 30.0% | |
| TACTTGAAGCTACAATTTGT+AGG | + | chr4.3:70550701-70550720 | MS.gene77039:intron | 30.0% | |
| TATTAACCTCATTATTCCTC+AGG | + | chr4.3:70550217-70550236 | MS.gene77039:CDS | 30.0% | |
| TCAACCTAGAAATCAAAATC+GGG | + | chr4.3:70550986-70551005 | MS.gene77039:intron | 30.0% | |
| TCTCGGTTATTTGACATAAA+TGG | + | chr4.3:70552664-70552683 | MS.gene77039:CDS | 30.0% | |
| TCTGCTAAGAGAAAGAAATT+TGG | + | chr4.3:70552919-70552938 | MS.gene77039:CDS | 30.0% | |
| TGCCTATCAAATTCAAAAGA+TGG | - | chr4.3:70552868-70552887 | None:intergenic | 30.0% | |
| ! | AAGCTACAATTTGTAGGTTT+TGG | + | chr4.3:70550707-70550726 | MS.gene77039:intron | 30.0% |
| ! | ATTTTCTAATTAGGGAGACT+TGG | + | chr4.3:70550374-70550393 | MS.gene77039:intron | 30.0% |
| ! | GTGTTTGATTTCAATTCTAG+AGG | + | chr4.3:70550589-70550608 | MS.gene77039:intron | 30.0% |
| ! | TAGAGCATTATACTCTTCAA+AGG | - | chr4.3:70552350-70552369 | None:intergenic | 30.0% |
| ! | TTGGATTTCATACGTTTTTG+GGG | + | chr4.3:70551422-70551441 | MS.gene77039:intron | 30.0% |
| ! | TTTTCACAAAACCAAAACTG+CGG | - | chr4.3:70551326-70551345 | None:intergenic | 30.0% |
| !! | CGAATCCAGGTTTAATTTTA+AGG | + | chr4.3:70551816-70551835 | MS.gene77039:CDS | 30.0% |
| !! | TTGAAGAGGCTTTAAGAAAA+TGG | + | chr4.3:70552569-70552588 | MS.gene77039:CDS | 30.0% |
| !!! | TCTCGATGTTTTAAAAGAGT+TGG | + | chr4.3:70551628-70551647 | MS.gene77039:CDS | 30.0% |
| !!! | TTTTGGGGGTATTTTCTTTT+TGG | + | chr4.3:70551437-70551456 | MS.gene77039:intron | 30.0% |
| ACGAAAGAATCTCGATGAAA+AGG | + | chr4.3:70552800-70552819 | MS.gene77039:CDS | 35.0% | |
| ACGAGCTTATCGTTAAAGAA+AGG | + | chr4.3:70551600-70551619 | MS.gene77039:CDS | 35.0% | |
| ACTCAACAAGAAACTTCAGA+AGG | + | chr4.3:70551913-70551932 | MS.gene77039:CDS | 35.0% | |
| AGACTTGGATCTGGATATAT+AGG | + | chr4.3:70550389-70550408 | MS.gene77039:intron | 35.0% | |
| ATTCTGAGTTAAACTCTCTC+TGG | - | chr4.3:70551960-70551979 | None:intergenic | 35.0% | |
| ATTTGACCTATCGATAGAGT+CGG | - | chr4.3:70552730-70552749 | None:intergenic | 35.0% | |
| CGAAGCAAATGTATCGAAAA+TGG | + | chr4.3:70552438-70552457 | MS.gene77039:CDS | 35.0% | |
| CGAAGTTAAAACAAGCAAGA+AGG | + | chr4.3:70552492-70552511 | MS.gene77039:CDS | 35.0% | |
| CGAGCTTATCGTTAAAGAAA+GGG | + | chr4.3:70551601-70551620 | MS.gene77039:CDS | 35.0% | |
| CTGAAGCTCTTTCGTAATAT+CGG | - | chr4.3:70552083-70552102 | None:intergenic | 35.0% | |
| CTGTTAAAGAAGCTGTTACT+CGG | + | chr4.3:70550132-70550151 | MS.gene77039:CDS | 35.0% | |
| GATGAAGAAAAGGAAAACCA+TGG | + | chr4.3:70551770-70551789 | MS.gene77039:CDS | 35.0% | |
| GCTTCTTTAACAGACTCAAA+CGG | - | chr4.3:70550125-70550144 | None:intergenic | 35.0% | |
| GGAAGTAGATTCTGGTAATT+TGG | + | chr4.3:70550933-70550952 | MS.gene77039:intron | 35.0% | |
| GGCAGAACATTTCAAGAAAA+TGG | + | chr4.3:70552117-70552136 | MS.gene77039:CDS | 35.0% | |
| TAAAATGAAGGAAGCTGCTA+GGG | + | chr4.3:70552237-70552256 | MS.gene77039:CDS | 35.0% | |
| TGCTGAAATTGAATGTGGTT+CGG | + | chr4.3:70552048-70552067 | MS.gene77039:CDS | 35.0% | |
| TTGACTGCAATTTCGAATCA+CGG | - | chr4.3:70551287-70551306 | None:intergenic | 35.0% | |
| TTTCTTGAAATGTTCTGCCT+CGG | - | chr4.3:70552116-70552135 | None:intergenic | 35.0% | |
| ! | ACATCAAAGGAGTTCTAACT+AGG | - | chr4.3:70551100-70551119 | None:intergenic | 35.0% |
| ! | CAGATTTTCAACAAGCCTTT+TGG | - | chr4.3:70551660-70551679 | None:intergenic | 35.0% |
| ! | GATTCTGGTAATTTGGAGTT+TGG | + | chr4.3:70550940-70550959 | MS.gene77039:intron | 35.0% |
| ! | GGTTCAGCTTTTACAAGAAT+TGG | - | chr4.3:70550848-70550867 | None:intergenic | 35.0% |
| ! | TTTCTAGGTTGAACAACTCT+TGG | - | chr4.3:70550978-70550997 | None:intergenic | 35.0% |
| !! | AAGAGTTGGAAAGTACCAAA+AGG | + | chr4.3:70551642-70551661 | MS.gene77039:CDS | 35.0% |
| !! | ATGAAAAGGAAAGTGTCGTT+GGG | + | chr4.3:70552814-70552833 | MS.gene77039:CDS | 35.0% |
| !! | TGGATTTCATACGTTTTTGG+GGG | + | chr4.3:70551423-70551442 | MS.gene77039:intron | 35.0% |
| !!! | AGAACCCGATTTTGATTTCT+AGG | - | chr4.3:70550993-70551012 | None:intergenic | 35.0% |
| !!! | CAACCTCTAGAATCACTTTT+TGG | - | chr4.3:70550616-70550635 | None:intergenic | 35.0% |
| !!! | GGATGTTTTAAAAAGGGTTG+AGG | + | chr4.3:70552459-70552478 | MS.gene77039:CDS | 35.0% |
| AAAATTGGAGGAACAAGCAG+TGG | + | chr4.3:70551568-70551587 | MS.gene77039:CDS | 40.0% | |
| AAAGAAGCTGTTACTCGGTT+CGG | + | chr4.3:70550137-70550156 | MS.gene77039:CDS | 40.0% | |
| AACAAGACTTAAACTGCAGG+TGG | + | chr4.3:70552018-70552037 | MS.gene77039:CDS | 40.0% | |
| AAGCTGAACCAAACATACAC+TGG | + | chr4.3:70550858-70550877 | MS.gene77039:intron | 40.0% | |
| ACCAACCAAGTTGTCAGTTT+GGG | + | chr4.3:70551130-70551149 | MS.gene77039:intron | 40.0% | |
| AGAAGCCAACTTTGAACTTG+AGG | + | chr4.3:70552986-70553005 | MS.gene77039:CDS | 40.0% | |
| AGAGCTTGATGCTGGAAAAT+TGG | + | chr4.3:70551553-70551572 | MS.gene77039:CDS | 40.0% | |
| AGCTCTTTCGTAATATCGGA+AGG | - | chr4.3:70552079-70552098 | None:intergenic | 40.0% | |
| AGCTTCTTCGATAGTGAGAA+GGG | - | chr4.3:70552645-70552664 | None:intergenic | 40.0% | |
| AGGGAAGTTAGTAGTTGAAG+AGG | + | chr4.3:70552555-70552574 | MS.gene77039:CDS | 40.0% | |
| AGTTGCTGCTCGTAAAATGA+AGG | + | chr4.3:70552225-70552244 | MS.gene77039:CDS | 40.0% | |
| ATGATGCCAGAGAAGTTTGA+AGG | + | chr4.3:70552766-70552785 | MS.gene77039:CDS | 40.0% | |
| CAGCGATATCGTTTGTAGTT+CGG | - | chr4.3:70551871-70551890 | None:intergenic | 40.0% | |
| CCAAACAAGACTTAAACTGC+AGG | + | chr4.3:70552015-70552034 | MS.gene77039:CDS | 40.0% | |
| CGATAGGTCAAATATTGAGC+CGG | + | chr4.3:70552737-70552756 | MS.gene77039:CDS | 40.0% | |
| GTAAAATGAAGGAAGCTGCT+AGG | + | chr4.3:70552236-70552255 | MS.gene77039:CDS | 40.0% | |
| TAATTAGGGAGACTTGGATC+TGG | + | chr4.3:70550380-70550399 | MS.gene77039:intron | 40.0% | |
| TCTTCTAACTAAGACACGAG+CGG | - | chr4.3:70551050-70551069 | None:intergenic | 40.0% | |
| TGAAACCACCAGTGTATGTT+TGG | - | chr4.3:70550869-70550888 | None:intergenic | 40.0% | |
| TTAAGAAAATGGCGATCCGA+GGG | + | chr4.3:70552580-70552599 | MS.gene77039:CDS | 40.0% | |
| TTCATCCCAAACTGACAACT+TGG | - | chr4.3:70551138-70551157 | None:intergenic | 40.0% | |
| TTTAAGAAAATGGCGATCCG+AGG | + | chr4.3:70552579-70552598 | MS.gene77039:CDS | 40.0% | |
| ! | TCAAAGGAGTTCTAACTAGG+AGG | - | chr4.3:70551097-70551116 | None:intergenic | 40.0% |
| !! | AGAAGCTTTGGAAAGAGTAG+AGG | + | chr4.3:70552522-70552541 | MS.gene77039:CDS | 40.0% |
| !! | CCTGCAGTTTAAGTCTTGTT+TGG | - | chr4.3:70552018-70552037 | None:intergenic | 40.0% |
| !! | GATGAAAAGGAAAGTGTCGT+TGG | + | chr4.3:70552813-70552832 | MS.gene77039:CDS | 40.0% |
| AACACAGAAGAGCTTGATGC+TGG | + | chr4.3:70551545-70551564 | MS.gene77039:CDS | 45.0% | |
| AGAGTAGAGGCTGCAAATAG+AGG | + | chr4.3:70552535-70552554 | MS.gene77039:CDS | 45.0% | |
| ATCCCACCTTCAAACTTCTC+TGG | - | chr4.3:70552775-70552794 | None:intergenic | 45.0% | |
| ATGCCAGAGAAGTTTGAAGG+TGG | + | chr4.3:70552769-70552788 | MS.gene77039:CDS | 45.0% | |
| CACAAAACCAAAACTGCGGT+TGG | - | chr4.3:70551322-70551341 | None:intergenic | 45.0% | |
| CACCAACCAAGTTGTCAGTT+TGG | + | chr4.3:70551129-70551148 | MS.gene77039:intron | 45.0% | |
| CTCACTATCGAAGAAGCTCT+CGG | + | chr4.3:70552647-70552666 | MS.gene77039:CDS | 45.0% | |
| CTGAACCAAACATACACTGG+TGG | + | chr4.3:70550861-70550880 | MS.gene77039:intron | 45.0% | |
| GAAGGAGAACGGTTTAAGAG+CGG | + | chr4.3:70550082-70550101 | MS.gene77039:CDS | 45.0% | |
| GAAGGCTCTTGAAGAAGCTT+TGG | + | chr4.3:70552510-70552529 | MS.gene77039:CDS | 45.0% | |
| GACTGTGTGCAAAACTGTGA+TGG | + | chr4.3:70552313-70552332 | MS.gene77039:CDS | 45.0% | |
| GAGCTTCTTCGATAGTGAGA+AGG | - | chr4.3:70552646-70552665 | None:intergenic | 45.0% | |
| GAGTAGAGGCTGCAAATAGA+GGG | + | chr4.3:70552536-70552555 | MS.gene77039:CDS | 45.0% | |
| GAGTCGTGTTCCTTCCAATT+CGG | + | chr4.3:70551793-70551812 | MS.gene77039:CDS | 45.0% | |
| GCTTGATGCTGGAAAATTGG+AGG | + | chr4.3:70551556-70551575 | MS.gene77039:CDS | 45.0% | |
| GGGAGCCACTGTAATAATCA+TGG | - | chr4.3:70551236-70551255 | None:intergenic | 45.0% | |
| GGGCCAAAAAGTGATTCTAG+AGG | + | chr4.3:70550610-70550629 | MS.gene77039:intron | 45.0% | |
| TAAACCTGGATTCGCCGAAT+TGG | - | chr4.3:70551810-70551829 | None:intergenic | 45.0% | |
| TACCAGAATCTACTTCCCCT+AGG | - | chr4.3:70550930-70550949 | None:intergenic | 45.0% | |
| TACTTCCCCTAGGAACTAGA+GGG | - | chr4.3:70550920-70550939 | None:intergenic | 45.0% | |
| TCCCAAACTGACAACTTGGT+TGG | - | chr4.3:70551134-70551153 | None:intergenic | 45.0% | |
| TCTAACATGCAAAGCTCGAG+AGG | + | chr4.3:70552366-70552385 | MS.gene77039:CDS | 45.0% | |
| TCTCTGGCATCATCAGTTTC+CGG | - | chr4.3:70552759-70552778 | None:intergenic | 45.0% | |
| TGCCAGAGAAGTTTGAAGGT+GGG | + | chr4.3:70552770-70552789 | MS.gene77039:CDS | 45.0% | |
| TTCCTAGGGGAAGTAGATTC+TGG | + | chr4.3:70550925-70550944 | MS.gene77039:intron | 45.0% | |
| ! | CTAAAGCCGACTCTATCGAT+AGG | + | chr4.3:70552721-70552740 | MS.gene77039:CDS | 45.0% |
| ! | CTGGTAATTTGGAGTTTGGC+CGG | + | chr4.3:70550944-70550963 | MS.gene77039:intron | 45.0% |
| ! | TGATCGCCTTTTGTTACCCT+CGG | - | chr4.3:70552599-70552618 | None:intergenic | 45.0% |
| ! | TGCTTACCCTCTAGTTCCTA+GGG | + | chr4.3:70550911-70550930 | MS.gene77039:intron | 45.0% |
| !! | AGTCGGCTTTAGAACTGGTT+TGG | - | chr4.3:70552713-70552732 | None:intergenic | 45.0% |
| !! | GATAGAGTCGGCTTTAGAAC+TGG | - | chr4.3:70552718-70552737 | None:intergenic | 45.0% |
| AAACCGTTCTCCTTCGAACC+CGG | - | chr4.3:70550077-70550096 | None:intergenic | 50.0% | |
| ACAACTCTTGGCCAGACTTC+CGG | - | chr4.3:70550966-70550985 | None:intergenic | 50.0% | |
| CTACTTCCCCTAGGAACTAG+AGG | - | chr4.3:70550921-70550940 | None:intergenic | 50.0% | |
| GGAAACTCCTGATATGGTGG+TGG | + | chr4.3:70550037-70550056 | MS.gene77039:CDS | 50.0% | |
| GGAGGAACAAGCAGTGGAAT+TGG | + | chr4.3:70551574-70551593 | MS.gene77039:CDS | 50.0% | |
| GGTGAGCTGAGGAACATCAA+AGG | - | chr4.3:70551113-70551132 | None:intergenic | 50.0% | |
| ! | CGCTGATGTTCGAGTTTCTG+TGG | + | chr4.3:70551886-70551905 | MS.gene77039:CDS | 50.0% |
| ! | GCTTACCCTCTAGTTCCTAG+GGG | + | chr4.3:70550912-70550931 | MS.gene77039:intron | 50.0% |
| ! | GTGCTTACCCTCTAGTTCCT+AGG | + | chr4.3:70550910-70550929 | MS.gene77039:intron | 50.0% |
| !! | ACAACTTGGTTGGTGAGCTG+AGG | - | chr4.3:70551124-70551143 | None:intergenic | 50.0% |
| !! | CTGATATGGTGGTGGTGAAC+CGG | + | chr4.3:70550045-70550064 | MS.gene77039:CDS | 50.0% |
| !! | GGTTCGGTGGTGTTGGTTAT+TGG | + | chr4.3:70550153-70550172 | MS.gene77039:CDS | 50.0% |
| !! | TGATATGGTGGTGGTGAACC+GGG | + | chr4.3:70550046-70550065 | MS.gene77039:CDS | 50.0% |
| CCTGGATTCGCCGAATTGGA+AGG | - | chr4.3:70551806-70551825 | None:intergenic | 55.0% | |
| CCTTCCAATTCGGCGAATCC+AGG | + | chr4.3:70551803-70551822 | MS.gene77039:CDS | 55.0% | |
| CGGTTCACCACCACCATATC+AGG | - | chr4.3:70550047-70550066 | None:intergenic | 55.0% | |
| GAACCGGGTTCGAAGGAGAA+CGG | + | chr4.3:70550071-70550090 | MS.gene77039:CDS | 55.0% | |
| GCTTCAGCGATTGAGTTCCG+AGG | + | chr4.3:70552096-70552115 | MS.gene77039:CDS | 55.0% | |
| GGCGATCCGAGGGTAACAAA+AGG | + | chr4.3:70552590-70552609 | MS.gene77039:CDS | 55.0% | |
| TGGAAGGAACACGACTCCCA+TGG | - | chr4.3:70551790-70551809 | None:intergenic | 55.0% | |
| TTGGAGTTTGGCCGGAAGTC+TGG | + | chr4.3:70550952-70550971 | MS.gene77039:intron | 55.0% | |
| ! | GATGGGTCCAACCGCAGTTT+TGG | + | chr4.3:70551312-70551331 | MS.gene77039:intron | 55.0% |
| ! | GTGTCGTTGGGTCAGATGCT+TGG | + | chr4.3:70552826-70552845 | MS.gene77039:CDS | 55.0% |
| !! | GAAGCTGTTACTCGGTTCGG+TGG | + | chr4.3:70550140-70550159 | MS.gene77039:CDS | 55.0% |
| !! | GTTACTCGGTTCGGTGGTGT+TGG | + | chr4.3:70550146-70550165 | MS.gene77039:CDS | 55.0% |
| CCTTCGAACCCGGTTCAACC+CGG | - | chr4.3:70550067-70550086 | None:intergenic | 60.0% | |
| CTCGGCAAGTGCAGCTGCTT+CGG | - | chr4.3:70552266-70552285 | None:intergenic | 60.0% | |
| ! | GGTGGTGAACCGGGTTGAAC+CGG | + | chr4.3:70550055-70550074 | MS.gene77039:CDS | 60.0% |
| ! | GTGGTGAACCGGGTTGAACC+GGG | + | chr4.3:70550056-70550075 | MS.gene77039:CDS | 60.0% |
| GGCAAGTGCAGCTGCTTCGG+CGG | - | chr4.3:70552263-70552282 | None:intergenic | 65.0% | |
| ! | CCGGGTTGAACCGGGTTCGA+AGG | + | chr4.3:70550064-70550083 | MS.gene77039:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 70550035 | 70553011 | 70550035 | ID=MS.gene77039 |
| chr4.3 | mRNA | 70550035 | 70553011 | 70550035 | ID=MS.gene77039.t1;Parent=MS.gene77039 |
| chr4.3 | exon | 70550035 | 70550238 | 70550035 | ID=MS.gene77039.t1.exon1;Parent=MS.gene77039.t1 |
| chr4.3 | CDS | 70550035 | 70550238 | 70550035 | ID=cds.MS.gene77039.t1;Parent=MS.gene77039.t1 |
| chr4.3 | exon | 70551539 | 70553011 | 70551539 | ID=MS.gene77039.t1.exon2;Parent=MS.gene77039.t1 |
| chr4.3 | CDS | 70551539 | 70553011 | 70551539 | ID=cds.MS.gene77039.t1;Parent=MS.gene77039.t1 |
| Gene Sequence |
| Protein sequence |
