Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77085.t1 | XP_024632083.1 | 97.8 | 535 | 12 | 0 | 3 | 537 | 1 | 535 | 2.10E-306 | 1060.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77085.t1 | Q949Q1 | 72.5 | 534 | 145 | 1 | 3 | 534 | 1 | 534 | 1.6e-230 | 800.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77085.t1 | A0A396J7Q2 | 97.8 | 535 | 12 | 0 | 3 | 537 | 1 | 535 | 1.5e-306 | 1060.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052611 | MS.gene77085 | 0.819606 | 1.06E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77085.t1 | MTR_2g461670 | 93.580 | 514 | 25 | 1 | 24 | 537 | 85 | 590 | 0.0 | 988 |
| MS.gene77085.t1 | MTR_4g109890 | 79.065 | 535 | 112 | 0 | 3 | 537 | 1 | 535 | 0.0 | 909 |
| MS.gene77085.t1 | MTR_2g015550 | 53.933 | 534 | 240 | 5 | 3 | 534 | 1 | 530 | 0.0 | 615 |
| MS.gene77085.t1 | MTR_2g006790 | 48.224 | 535 | 245 | 7 | 3 | 534 | 1 | 506 | 0.0 | 523 |
| MS.gene77085.t1 | MTR_2g027740 | 45.161 | 496 | 259 | 5 | 48 | 536 | 176 | 665 | 5.95e-155 | 458 |
| MS.gene77085.t1 | MTR_7g075840 | 47.527 | 465 | 236 | 5 | 75 | 536 | 203 | 662 | 2.33e-148 | 441 |
| MS.gene77085.t1 | MTR_3g107930 | 47.059 | 459 | 233 | 4 | 83 | 536 | 133 | 586 | 8.04e-147 | 434 |
| MS.gene77085.t1 | MTR_8g092000 | 45.690 | 464 | 243 | 5 | 75 | 537 | 124 | 579 | 7.31e-146 | 432 |
| MS.gene77085.t1 | MTR_3g107930 | 47.059 | 459 | 233 | 4 | 83 | 536 | 210 | 663 | 9.30e-146 | 434 |
| MS.gene77085.t1 | MTR_8g033360 | 45.958 | 433 | 224 | 4 | 75 | 502 | 170 | 597 | 1.61e-133 | 404 |
| MS.gene77085.t1 | MTR_7g055600 | 46.117 | 412 | 212 | 5 | 132 | 537 | 26 | 433 | 2.86e-125 | 374 |
| MS.gene77085.t1 | MTR_7g057530 | 46.117 | 412 | 212 | 5 | 132 | 537 | 26 | 433 | 2.86e-125 | 374 |
| MS.gene77085.t1 | MTR_6g016380 | 44.039 | 411 | 221 | 5 | 132 | 537 | 148 | 554 | 4.37e-117 | 357 |
| MS.gene77085.t1 | MTR_7g096160 | 37.093 | 461 | 254 | 7 | 82 | 536 | 222 | 652 | 3.03e-99 | 314 |
| MS.gene77085.t1 | MTR_2g082650 | 37.805 | 410 | 236 | 5 | 146 | 536 | 1 | 410 | 1.26e-97 | 302 |
| MS.gene77085.t1 | MTR_2g082650 | 37.560 | 418 | 242 | 5 | 138 | 536 | 122 | 539 | 1.95e-97 | 306 |
| MS.gene77085.t1 | MTR_7g012370 | 36.543 | 405 | 238 | 6 | 141 | 526 | 121 | 525 | 1.40e-94 | 299 |
| MS.gene77085.t1 | MTR_4g133570 | 37.073 | 410 | 237 | 5 | 148 | 536 | 53 | 462 | 3.45e-92 | 290 |
| MS.gene77085.t1 | MTR_6g013840 | 36.867 | 415 | 243 | 6 | 141 | 536 | 116 | 530 | 4.73e-88 | 281 |
| MS.gene77085.t1 | MTR_3g452360 | 37.011 | 435 | 248 | 11 | 120 | 536 | 102 | 528 | 7.79e-87 | 278 |
| MS.gene77085.t1 | MTR_3g452360 | 39.221 | 385 | 210 | 9 | 170 | 536 | 1 | 379 | 1.97e-86 | 272 |
| MS.gene77085.t1 | MTR_1g070490 | 33.399 | 509 | 283 | 14 | 48 | 537 | 127 | 598 | 7.30e-81 | 265 |
| MS.gene77085.t1 | MTR_7g012370 | 33.956 | 321 | 195 | 5 | 141 | 444 | 121 | 441 | 7.24e-64 | 216 |
| MS.gene77085.t1 | MTR_7g074680 | 30.968 | 465 | 289 | 10 | 81 | 536 | 122 | 563 | 1.87e-57 | 201 |
| MS.gene77085.t1 | MTR_7g074680 | 30.968 | 465 | 289 | 10 | 81 | 536 | 162 | 603 | 2.27e-57 | 202 |
| MS.gene77085.t1 | MTR_7g074680 | 30.968 | 465 | 289 | 10 | 81 | 536 | 182 | 623 | 3.38e-57 | 202 |
| MS.gene77085.t1 | MTR_7g074680 | 30.968 | 465 | 289 | 10 | 81 | 536 | 182 | 623 | 4.45e-57 | 201 |
| MS.gene77085.t1 | MTR_7g074680 | 30.968 | 465 | 289 | 10 | 81 | 536 | 202 | 643 | 4.61e-57 | 202 |
| MS.gene77085.t1 | MTR_7g074680 | 34.409 | 372 | 219 | 7 | 171 | 536 | 308 | 660 | 2.13e-55 | 197 |
| MS.gene77085.t1 | MTR_4g133942 | 49.749 | 199 | 70 | 3 | 341 | 536 | 161 | 332 | 9.78e-51 | 177 |
| MS.gene77085.t1 | MTR_3g092310 | 31.937 | 191 | 120 | 5 | 342 | 523 | 140 | 329 | 8.87e-25 | 105 |
| MS.gene77085.t1 | MTR_7g109210 | 32.065 | 184 | 118 | 4 | 342 | 519 | 159 | 341 | 9.03e-25 | 106 |
| MS.gene77085.t1 | MTR_5g036580 | 34.031 | 191 | 117 | 6 | 342 | 523 | 166 | 356 | 1.41e-24 | 106 |
| MS.gene77085.t1 | MTR_6g008900 | 34.239 | 184 | 109 | 6 | 342 | 515 | 165 | 346 | 4.70e-24 | 104 |
| MS.gene77085.t1 | MTR_4g071620 | 34.239 | 184 | 109 | 6 | 342 | 515 | 165 | 346 | 4.70e-24 | 104 |
| MS.gene77085.t1 | MTR_8g078240 | 34.021 | 194 | 115 | 6 | 342 | 523 | 142 | 334 | 7.41e-24 | 103 |
| MS.gene77085.t1 | MTR_3g111600 | 34.031 | 191 | 117 | 5 | 342 | 523 | 80 | 270 | 1.34e-23 | 101 |
| MS.gene77085.t1 | MTR_4g118030 | 31.073 | 177 | 114 | 5 | 342 | 511 | 145 | 320 | 1.38e-22 | 99.8 |
| MS.gene77085.t1 | MTR_1g021855 | 33.679 | 193 | 116 | 6 | 342 | 523 | 165 | 356 | 7.53e-22 | 97.8 |
| MS.gene77085.t1 | MTR_7g094230 | 28.634 | 227 | 150 | 5 | 296 | 511 | 100 | 325 | 9.58e-22 | 97.1 |
| MS.gene77085.t1 | MTR_5g019220 | 32.673 | 202 | 125 | 6 | 342 | 533 | 166 | 366 | 4.00e-21 | 95.5 |
| MS.gene77085.t1 | MTR_1g089820 | 30.000 | 180 | 119 | 4 | 342 | 515 | 154 | 332 | 5.29e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77085.t1 | AT1G18580 | 72.989 | 522 | 139 | 1 | 18 | 537 | 16 | 537 | 0.0 | 807 |
| MS.gene77085.t1 | AT2G20810 | 51.769 | 537 | 250 | 7 | 3 | 534 | 1 | 533 | 0.0 | 571 |
| MS.gene77085.t1 | AT5G47780 | 46.695 | 469 | 244 | 4 | 70 | 537 | 152 | 615 | 6.20e-157 | 461 |
| MS.gene77085.t1 | AT3G61130 | 47.712 | 459 | 231 | 5 | 81 | 536 | 219 | 671 | 3.96e-154 | 456 |
| MS.gene77085.t1 | AT4G38270 | 45.032 | 473 | 248 | 7 | 72 | 536 | 206 | 674 | 1.71e-142 | 426 |
| MS.gene77085.t1 | AT4G38270 | 45.032 | 473 | 248 | 7 | 72 | 536 | 210 | 678 | 3.13e-142 | 426 |
| MS.gene77085.t1 | AT2G46480 | 44.397 | 464 | 240 | 4 | 81 | 536 | 85 | 538 | 6.44e-134 | 400 |
| MS.gene77085.t1 | AT2G46480 | 44.397 | 464 | 240 | 4 | 81 | 536 | 98 | 551 | 7.77e-134 | 400 |
| MS.gene77085.t1 | AT3G25140 | 47.330 | 412 | 207 | 5 | 132 | 537 | 151 | 558 | 2.88e-133 | 399 |
| MS.gene77085.t1 | AT2G46480 | 41.164 | 464 | 230 | 5 | 81 | 536 | 85 | 513 | 1.59e-118 | 359 |
| MS.gene77085.t1 | AT2G46480 | 41.164 | 464 | 230 | 5 | 81 | 536 | 98 | 526 | 4.44e-118 | 358 |
| MS.gene77085.t1 | AT3G02350 | 41.841 | 478 | 252 | 9 | 81 | 537 | 88 | 560 | 5.00e-115 | 352 |
| MS.gene77085.t1 | AT2G30575 | 36.009 | 461 | 262 | 5 | 81 | 536 | 176 | 608 | 4.16e-101 | 317 |
| MS.gene77085.t1 | AT5G54690 | 38.931 | 393 | 221 | 5 | 163 | 536 | 140 | 532 | 1.66e-97 | 306 |
| MS.gene77085.t1 | AT3G01040 | 38.072 | 415 | 238 | 5 | 141 | 536 | 116 | 530 | 3.55e-97 | 305 |
| MS.gene77085.t1 | AT3G01040 | 38.072 | 415 | 238 | 5 | 141 | 536 | 116 | 530 | 3.55e-97 | 305 |
| MS.gene77085.t1 | AT5G15470 | 38.313 | 415 | 237 | 5 | 141 | 536 | 116 | 530 | 1.64e-95 | 300 |
| MS.gene77085.t1 | AT1G06780 | 34.716 | 458 | 271 | 6 | 80 | 534 | 153 | 585 | 1.55e-93 | 297 |
| MS.gene77085.t1 | AT1G06780 | 34.565 | 460 | 273 | 6 | 80 | 536 | 166 | 600 | 3.28e-93 | 296 |
| MS.gene77085.t1 | AT3G01040 | 36.364 | 407 | 223 | 5 | 141 | 536 | 116 | 497 | 1.03e-85 | 274 |
| MS.gene77085.t1 | AT3G58790 | 38.350 | 412 | 228 | 10 | 145 | 536 | 1 | 406 | 5.78e-84 | 266 |
| MS.gene77085.t1 | AT3G58790 | 36.768 | 427 | 248 | 8 | 130 | 536 | 114 | 538 | 3.63e-83 | 269 |
| MS.gene77085.t1 | AT2G38650 | 32.096 | 458 | 288 | 9 | 81 | 536 | 181 | 617 | 5.11e-67 | 228 |
| MS.gene77085.t1 | AT2G38650 | 32.096 | 458 | 288 | 9 | 81 | 536 | 181 | 617 | 5.11e-67 | 228 |
| MS.gene77085.t1 | AT2G38650 | 31.978 | 369 | 226 | 10 | 81 | 446 | 181 | 527 | 2.26e-43 | 162 |
| MS.gene77085.t1 | AT3G28340 | 28.869 | 336 | 195 | 13 | 204 | 523 | 39 | 346 | 2.05e-27 | 114 |
| MS.gene77085.t1 | AT1G70090 | 32.984 | 191 | 119 | 6 | 342 | 523 | 169 | 359 | 1.27e-24 | 106 |
| MS.gene77085.t1 | AT1G70090 | 32.984 | 191 | 119 | 6 | 342 | 523 | 169 | 359 | 1.27e-24 | 106 |
| MS.gene77085.t1 | AT3G62660 | 31.122 | 196 | 125 | 5 | 342 | 528 | 164 | 358 | 3.02e-24 | 104 |
| MS.gene77085.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 342 | 523 | 150 | 339 | 5.00e-24 | 103 |
| MS.gene77085.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 342 | 523 | 150 | 339 | 5.00e-24 | 103 |
| MS.gene77085.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 342 | 523 | 150 | 339 | 5.00e-24 | 103 |
| MS.gene77085.t1 | AT1G24170 | 33.508 | 191 | 118 | 6 | 342 | 523 | 172 | 362 | 2.41e-23 | 102 |
| MS.gene77085.t1 | AT1G19300 | 32.292 | 192 | 119 | 6 | 342 | 523 | 150 | 340 | 1.17e-22 | 99.8 |
| MS.gene77085.t1 | AT3G06260 | 31.818 | 176 | 113 | 4 | 342 | 511 | 150 | 324 | 1.82e-22 | 99.4 |
| MS.gene77085.t1 | AT1G02720 | 32.632 | 190 | 120 | 5 | 342 | 523 | 165 | 354 | 8.99e-22 | 97.4 |
| MS.gene77085.t1 | AT1G02720 | 32.632 | 190 | 120 | 5 | 342 | 523 | 165 | 354 | 8.99e-22 | 97.4 |
| MS.gene77085.t1 | AT3G50760 | 31.915 | 188 | 117 | 5 | 342 | 519 | 136 | 322 | 3.10e-20 | 92.4 |
| MS.gene77085.t1 | AT1G13250 | 33.508 | 191 | 117 | 5 | 342 | 523 | 144 | 333 | 5.41e-20 | 92.0 |
| MS.gene77085.t1 | AT1G74088 | 51.899 | 79 | 31 | 1 | 153 | 231 | 26 | 97 | 4.90e-18 | 80.1 |
| MS.gene77085.t1 | AT1G74088 | 50.000 | 72 | 29 | 1 | 160 | 231 | 1 | 65 | 2.25e-14 | 68.6 |
Find 0 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGAAAAACTAATTTTAT+TGG | + | 16930:78111-78130 | None:intergenic | 10.0% |
| !! | ACATTAATTTAAATCTTGAT+TGG | + | 16930:76100-76119 | None:intergenic | 15.0% |
| !! | GTTTAGTAATAACAAAAATT+TGG | + | 16930:78346-78365 | None:intergenic | 15.0% |
| !! | TAAATTTCAATTCATTTATC+AGG | - | 16930:76146-76165 | MS.gene77085:CDS | 15.0% |
| !!! | CTTATAATTTTTGTTATAAG+TGG | - | 16930:76485-76504 | MS.gene77085:CDS | 15.0% |
| !! | AAATGTATTTACTCCAAATT+TGG | + | 16930:76254-76273 | None:intergenic | 20.0% |
| !! | AATCATGTTCTTTAACATTA+GGG | - | 16930:76643-76662 | MS.gene77085:CDS | 20.0% |
| !! | GTTCAGATTCATAATAAAAA+AGG | + | 16930:76616-76635 | None:intergenic | 20.0% |
| !!! | AAGATTTCTTGTTGTAAAAA+TGG | - | 16930:76696-76715 | MS.gene77085:CDS | 20.0% |
| !!! | GTAAATTCTACAACAATTTT+AGG | - | 16930:77338-77357 | MS.gene77085:CDS | 20.0% |
| !!! | TAGTATATAATTTGTGTTTC+TGG | - | 16930:77184-77203 | MS.gene77085:CDS | 20.0% |
| ! | AACATAATTACCATCAAGAT+CGG | - | 16930:76024-76043 | MS.gene77085:CDS | 25.0% |
| ! | AACTTGTCAAATGAACTAAA+TGG | + | 16930:76925-76944 | None:intergenic | 25.0% |
| ! | AATAACAATTTGATGTGAGA+GGG | - | 16930:76346-76365 | MS.gene77085:CDS | 25.0% |
| ! | AATGAAATTCTTCAACATTC+TGG | + | 16930:78212-78231 | None:intergenic | 25.0% |
| ! | ACTTGTCAAATGAACTAAAT+GGG | + | 16930:76924-76943 | None:intergenic | 25.0% |
| ! | AGAATGTAATATTACCAGAA+GGG | + | 16930:76060-76079 | None:intergenic | 25.0% |
| ! | AGAATGTTGAAGAATTTCAT+TGG | - | 16930:78211-78230 | MS.gene77085:intron | 25.0% |
| ! | ATAGCACATTCTTGAATATA+AGG | + | 16930:78924-78943 | None:intergenic | 25.0% |
| ! | ATCATGTTCTTTAACATTAG+GGG | - | 16930:76644-76663 | MS.gene77085:CDS | 25.0% |
| ! | CAATCATGTTCTTTAACATT+AGG | - | 16930:76642-76661 | MS.gene77085:CDS | 25.0% |
| ! | CGCAAAATCATGAATTTAAA+TGG | + | 16930:76575-76594 | None:intergenic | 25.0% |
| ! | TAGCACATTCTTGAATATAA+GGG | + | 16930:78923-78942 | None:intergenic | 25.0% |
| ! | TATATTCAAGAATGTGCTAT+AGG | - | 16930:78924-78943 | MS.gene77085:CDS | 25.0% |
| ! | TCTTGAAATCTTCATGAATA+TGG | - | 16930:77124-77143 | MS.gene77085:CDS | 25.0% |
| ! | TGTTATTACTAAACCATCTT+CGG | - | 16930:78352-78371 | MS.gene77085:intron | 25.0% |
| ! | TTAAAGAACATGATTGAAAC+TGG | + | 16930:76638-76657 | None:intergenic | 25.0% |
| ! | TTGAAAAGAGTAAAAAAGAG+AGG | + | 16930:76328-76347 | None:intergenic | 25.0% |
| ! | TTTCAATTCATTTATCAGGA+TGG | - | 16930:76150-76169 | MS.gene77085:CDS | 25.0% |
| ! | TTTCTCAGTAATGACTTTAA+AGG | - | 16930:78171-78190 | MS.gene77085:intron | 25.0% |
| !! | AAAGGATGAAAATTTTCCTA+AGG | - | 16930:77507-77526 | MS.gene77085:intron | 25.0% |
| !! | ATATCATTTCTGCATCTTTT+CGG | - | 16930:78029-78048 | MS.gene77085:intron | 25.0% |
| !! | ATGAAAATTTTCCTAAGGAT+AGG | - | 16930:77512-77531 | MS.gene77085:intron | 25.0% |
| !!! | ACTTCTTAGTTTTTATGGTT+TGG | - | 16930:78722-78741 | MS.gene77085:intron | 25.0% |
| !!! | ATGTTTTTGACTTGATTCAA+TGG | - | 16930:78610-78629 | MS.gene77085:intron | 25.0% |
| !!! | ATTTTGTCTGTATTTAAGAC+TGG | - | 16930:76277-76296 | MS.gene77085:CDS | 25.0% |
| !!! | GAGACAAAAATAGTTTTAAC+AGG | + | 16930:77434-77453 | None:intergenic | 25.0% |
| !!! | TCTACAACAATTTTAGGATT+AGG | - | 16930:77344-77363 | MS.gene77085:intron | 25.0% |
| AAATGTACTTGGTCCAAATT+TGG | - | 16930:76238-76257 | MS.gene77085:CDS | 30.0% | |
| ACATAATTACCATCAAGATC+GGG | - | 16930:76025-76044 | MS.gene77085:CDS | 30.0% | |
| AGTTGTAACACAATCTAGAA+AGG | + | 16930:76991-77010 | None:intergenic | 30.0% | |
| ATGTGAAACTTACTTCTGAT+TGG | - | 16930:77935-77954 | MS.gene77085:intron | 30.0% | |
| CAATAACAATTTGATGTGAG+AGG | - | 16930:76345-76364 | MS.gene77085:CDS | 30.0% | |
| CAGAAGAAAATCAGAAACTA+TGG | + | 16930:76873-76892 | None:intergenic | 30.0% | |
| CCTTGAAGATTAAAGTTGAA+AGG | + | 16930:77762-77781 | None:intergenic | 30.0% | |
| CCTTTCAACTTTAATCTTCA+AGG | - | 16930:77759-77778 | MS.gene77085:intron | 30.0% | |
| CTCCTTCATATTAAAGCAAA+AGG | - | 16930:76213-76232 | MS.gene77085:CDS | 30.0% | |
| CTTATAGATAATCTCAACCA+TGG | + | 16930:78858-78877 | None:intergenic | 30.0% | |
| CTTGTCAAATGAACTAAATG+GGG | + | 16930:76923-76942 | None:intergenic | 30.0% | |
| GAGAATGTAATATTACCAGA+AGG | + | 16930:76061-76080 | None:intergenic | 30.0% | |
| GATTATCTATAAGCAGGTAT+AGG | - | 16930:78865-78884 | MS.gene77085:CDS | 30.0% | |
| GTTGAAAGGCTTCTTATAAT+CGG | + | 16930:77748-77767 | None:intergenic | 30.0% | |
| TAACGTGTTTGCTCAAATAT+CGG | - | 16930:77879-77898 | MS.gene77085:intron | 30.0% | |
| TAGTTGTTGCAATGTCATAA+TGG | + | 16930:77795-77814 | None:intergenic | 30.0% | |
| TTGCCAATAGTGATATATTG+CGG | + | 16930:78652-78671 | None:intergenic | 30.0% | |
| TTGTCAAATGAACTAAATGG+GGG | + | 16930:76922-76941 | None:intergenic | 30.0% | |
| TTGTTACTACTTTGTGAAAC+AGG | - | 16930:76736-76755 | MS.gene77085:CDS | 30.0% | |
| TTTATGTACTTGTTCCATAG+TGG | + | 16930:78891-78910 | None:intergenic | 30.0% | |
| ! | AAAACAATCTTCTCAAGTTG+TGG | + | 16930:78399-78418 | None:intergenic | 30.0% |
| ! | GACCTTTTGCTTTAATATGA+AGG | + | 16930:76218-76237 | None:intergenic | 30.0% |
| ! | GTTTTTCATATTGTAACCGA+CGG | - | 16930:78120-78139 | MS.gene77085:intron | 30.0% |
| !! | ATAGAAGTGCTGTAATAATG+AGG | + | 16930:77052-77071 | None:intergenic | 30.0% |
| !! | GTTGTTACTTGTTACACTTT+TGG | - | 16930:77394-77413 | MS.gene77085:intron | 30.0% |
| !! | TAGAAGTGCTGTAATAATGA+GGG | + | 16930:77051-77070 | None:intergenic | 30.0% |
| !!! | AATCTCGAGCCTTTTATTTT+GGG | - | 16930:78280-78299 | MS.gene77085:intron | 30.0% |
| !!! | TTTTTCAAGGCAATTAACAG+AGG | - | 16930:77570-77589 | MS.gene77085:intron | 30.0% |
| AAATAGTGACGTAGGAAACA+TGG | - | 16930:77245-77264 | MS.gene77085:CDS | 35.0% | |
| AAGGCAATTAACAGAGGAAA+TGG | - | 16930:77576-77595 | MS.gene77085:intron | 35.0% | |
| AAGGCTTCTTATAATCGGTT+CGG | + | 16930:77743-77762 | None:intergenic | 35.0% | |
| ACAATAATCTTCACCTAGCA+TGG | - | 16930:77635-77654 | MS.gene77085:intron | 35.0% | |
| AGCAAAAGGTCAAATGTACT+TGG | - | 16930:76227-76246 | MS.gene77085:CDS | 35.0% | |
| AGTTGAGTAATTGTCATTCG+AGG | - | 16930:77219-77238 | MS.gene77085:CDS | 35.0% | |
| ATCCTACAAGGAATTGTGAA+CGG | + | 16930:76847-76866 | None:intergenic | 35.0% | |
| CAAGTTGTGGATAAATCTCA+GGG | + | 16930:78386-78405 | None:intergenic | 35.0% | |
| CAATAATCTTCACCTAGCAT+GGG | - | 16930:77636-77655 | MS.gene77085:intron | 35.0% | |
| GAATTGCATGGAAACGTAAT+CGG | - | 16930:78471-78490 | MS.gene77085:intron | 35.0% | |
| GGTTGAGATTATCTATAAGC+AGG | - | 16930:78859-78878 | MS.gene77085:CDS | 35.0% | |
| GTAAAATTCAGCCTATCCTT+AGG | + | 16930:77526-77545 | None:intergenic | 35.0% | |
| GTATAACCATTTCGCAGAAT+GGG | + | 16930:76825-76844 | None:intergenic | 35.0% | |
| TGACCGCAATATATCACTAT+TGG | - | 16930:78646-78665 | MS.gene77085:intron | 35.0% | |
| TGAGTCGATTATCGATATTG+AGG | + | 16930:78794-78813 | None:intergenic | 35.0% | |
| TGCAATTCAAGTGAGAAAAG+TGG | + | 16930:78459-78478 | None:intergenic | 35.0% | |
| TGTAAGCAATGAAGACTCTT+CGG | + | 16930:77916-77935 | None:intergenic | 35.0% | |
| TGTTGTTGCAAGACTGAAAA+GGG | + | 16930:77083-77102 | None:intergenic | 35.0% | |
| TTTCAGTCTTGCAACAACAA+TGG | - | 16930:77084-77103 | MS.gene77085:CDS | 35.0% | |
| ! | ATATTACCAGAAGGGTATGT+TGG | + | 16930:76052-76071 | None:intergenic | 35.0% |
| ! | CATCTTTTCGGATAATGTAC+TGG | - | 16930:78041-78060 | MS.gene77085:intron | 35.0% |
| ! | CCATAAAAACTAAGAAGTGC+AGG | + | 16930:78720-78739 | None:intergenic | 35.0% |
| ! | CTTTTCTCACTTGAATTGCA+TGG | - | 16930:78459-78478 | MS.gene77085:intron | 35.0% |
| ! | TAAAAACTAAGAAGTGCAGG+AGG | + | 16930:78717-78736 | None:intergenic | 35.0% |
| ! | TAATCGACTCATTGAAAGTG+CGG | - | 16930:78803-78822 | MS.gene77085:CDS | 35.0% |
| ! | TATGGGATCTGTTTTCTTCT+TGG | - | 16930:75963-75982 | MS.gene77085:CDS | 35.0% |
| ! | TCAAGTTGTGGATAAATCTC+AGG | + | 16930:78387-78406 | None:intergenic | 35.0% |
| ! | TGTCTGTATTTAAGACTGGA+TGG | - | 16930:76281-76300 | MS.gene77085:CDS | 35.0% |
| ! | TGTTACCTTTTGCAGCTATT+AGG | - | 16930:76766-76785 | MS.gene77085:CDS | 35.0% |
| ! | TTGTTGTTGCAAGACTGAAA+AGG | + | 16930:77084-77103 | None:intergenic | 35.0% |
| !! | AAAGTGGTGTTAGGTCTTTT+TGG | + | 16930:78443-78462 | None:intergenic | 35.0% |
| !! | CCTGCACTTCTTAGTTTTTA+TGG | - | 16930:78717-78736 | MS.gene77085:intron | 35.0% |
| !! | GAATCTCGAGCCTTTTATTT+TGG | - | 16930:78279-78298 | MS.gene77085:intron | 35.0% |
| !! | TAAGTGCGACATCTTTTTCA+AGG | - | 16930:77557-77576 | MS.gene77085:intron | 35.0% |
| !!! | AGATGGCATGTTTTAGGATT+AGG | - | 16930:78762-78781 | MS.gene77085:intron | 35.0% |
| !!! | ATCTCGAGCCTTTTATTTTG+GGG | - | 16930:78281-78300 | MS.gene77085:intron | 35.0% |
| !!! | CTTTTATTTTGGGGCATATC+CGG | - | 16930:78290-78309 | MS.gene77085:intron | 35.0% |
| AAACTATGGCAGATCCTACA+AGG | + | 16930:76859-76878 | None:intergenic | 40.0% | |
| AAGCTCAAAGTTTGATCCAC+AGG | - | 16930:78563-78582 | MS.gene77085:intron | 40.0% | |
| ATCCTAAAACATGCCATCTC+CGG | + | 16930:78761-78780 | None:intergenic | 40.0% | |
| ATTCGACGGAAGTTGTCTTA+TGG | - | 16930:75945-75964 | MS.gene77085:CDS | 40.0% | |
| ATTGCAGGACAGGAATACAA+AGG | - | 16930:77489-77508 | MS.gene77085:intron | 40.0% | |
| CAAGTGAGAAAAGTGGTGTT+AGG | + | 16930:78452-78471 | None:intergenic | 40.0% | |
| CGGATATGCCCCAAAATAAA+AGG | + | 16930:78292-78311 | None:intergenic | 40.0% | |
| CGGCTGTTATTCACTTCAAT+GGG | - | 16930:78823-78842 | MS.gene77085:CDS | 40.0% | |
| GAACACCTAATAGCTGCAAA+AGG | + | 16930:76774-76793 | None:intergenic | 40.0% | |
| GGGTTTGAATTCATACAGAG+AGG | - | 16930:76664-76683 | MS.gene77085:CDS | 40.0% | |
| GGTATAACCATTTCGCAGAA+TGG | + | 16930:76826-76845 | None:intergenic | 40.0% | |
| TAAATGCTGAACCGAAACTG+CGG | - | 16930:78316-78335 | MS.gene77085:intron | 40.0% | |
| TAAGACAACTTCCGTCGAAT+CGG | + | 16930:75945-75964 | None:intergenic | 40.0% | |
| TAAGTGACATATTGCAGGAC+AGG | - | 16930:77479-77498 | MS.gene77085:intron | 40.0% | |
| TACCGTTCACAATTCCTTGT+AGG | - | 16930:76842-76861 | MS.gene77085:CDS | 40.0% | |
| TCAATGGGAACATGAAACCA+TGG | - | 16930:78838-78857 | MS.gene77085:CDS | 40.0% | |
| TGCAATAACCACATAAGCCT+TGG | + | 16930:77608-77627 | None:intergenic | 40.0% | |
| TTCGACGGAAGTTGTCTTAT+GGG | - | 16930:75946-75965 | MS.gene77085:CDS | 40.0% | |
| TTCGGTTCAGCATTTACATC+CGG | + | 16930:78312-78331 | None:intergenic | 40.0% | |
| ! | AATTTGGAGTTCCGCAGTTT+CGG | + | 16930:78330-78349 | None:intergenic | 40.0% |
| ! | CCTGCAATATGTCACTTACT+CGG | + | 16930:77477-77496 | None:intergenic | 40.0% |
| ! | CTTTAAAGGAGCAACGATAG+AGG | - | 16930:78185-78204 | MS.gene77085:intron | 40.0% |
| ! | GATTGGTCGCATCTGATAAA+GGG | + | 16930:76083-76102 | None:intergenic | 40.0% |
| ! | GGATAATGTACTGGCAACAT+TGG | - | 16930:78050-78069 | MS.gene77085:intron | 40.0% |
| ! | TGATTGGTCGCATCTGATAA+AGG | + | 16930:76084-76103 | None:intergenic | 40.0% |
| !! | AGCATTTTCTGTTGTCGGTT+TGG | - | 16930:75986-76005 | MS.gene77085:CDS | 40.0% |
| !! | CTTGGAGCATTTTCTGTTGT+CGG | - | 16930:75981-76000 | MS.gene77085:CDS | 40.0% |
| !! | TTCTGTTGTCGGTTTGGTTA+TGG | - | 16930:75992-76011 | MS.gene77085:CDS | 40.0% |
| AAGACAACTTCCGTCGAATC+GGG | + | 16930:75944-75963 | None:intergenic | 45.0% | |
| ACCAAGACAAGTCTAACTGC+AGG | + | 16930:76430-76449 | None:intergenic | 45.0% | |
| ACCTTCCCTGCAAAAACTCT+CGG | - | 16930:77966-77985 | MS.gene77085:intron | 45.0% | |
| ACTATGGAACGATGCAAGCA+TGG | - | 16930:78148-78167 | MS.gene77085:intron | 45.0% | |
| AGAGGAAATGGTTCTTGCCA+AGG | - | 16930:77588-77607 | MS.gene77085:intron | 45.0% | |
| ATAGATGCTGATCCGTTAGC+CGG | + | 16930:78011-78030 | None:intergenic | 45.0% | |
| CAGGGATGTAAAACCGAAGA+TGG | + | 16930:78368-78387 | None:intergenic | 45.0% | |
| CCGAGTAAGTGACATATTGC+AGG | - | 16930:77474-77493 | MS.gene77085:intron | 45.0% | |
| CCTGTGAAATGCTTCAAGAC+AGG | + | 16930:78508-78527 | None:intergenic | 45.0% | |
| CGAGGCTTAAATAGTGACGT+AGG | - | 16930:77237-77256 | MS.gene77085:CDS | 45.0% | |
| GACTGGAAAGCCTGTTAACA+AGG | - | 16930:77711-77730 | MS.gene77085:intron | 45.0% | |
| GCGGCTGTTATTCACTTCAA+TGG | - | 16930:78822-78841 | MS.gene77085:CDS | 45.0% | |
| GGACAACAACATCGTCATCA+AGG | + | 16930:78422-78441 | None:intergenic | 45.0% | |
| GTTAACAGGCTTTCCAGTCA+TGG | + | 16930:77710-77729 | None:intergenic | 45.0% | |
| TAAGCAGGTATAGGCCACTA+TGG | - | 16930:78874-78893 | MS.gene77085:CDS | 45.0% | |
| TATGTTGGACCCGATCTTGA+TGG | + | 16930:76037-76056 | None:intergenic | 45.0% | |
| TCCTGCAGTTAGACTTGTCT+TGG | - | 16930:76426-76445 | MS.gene77085:CDS | 45.0% | |
| TCGAGCAGCTGTTTGACAAT+CGG | + | 16930:78255-78274 | None:intergenic | 45.0% | |
| TCGGCTTCTTCCTTGTTAAC+AGG | + | 16930:77724-77743 | None:intergenic | 45.0% | |
| TTACTCGGTAAGTACACACG+AGG | + | 16930:77462-77481 | None:intergenic | 45.0% | |
| ! | CCTGTCTTGAAGCATTTCAC+AGG | - | 16930:78505-78524 | MS.gene77085:intron | 45.0% |
| ! | CTCATCCGAGAGTTTTTGCA+GGG | + | 16930:77974-77993 | None:intergenic | 45.0% |
| ! | TCTCATCCGAGAGTTTTTGC+AGG | + | 16930:77975-77994 | None:intergenic | 45.0% |
| AACAGGCTTTCCAGTCATGG+CGG | + | 16930:77707-77726 | None:intergenic | 50.0% | |
| AGAATGCCGATGGATCACTC+TGG | - | 16930:78676-78695 | MS.gene77085:intron | 50.0% | |
| ATGAGACGAGAAACTCCCTC+CGG | - | 16930:77989-78008 | MS.gene77085:intron | 50.0% | |
| CGTTCCATAGTTGACACCGT+CGG | + | 16930:78139-78158 | None:intergenic | 50.0% | |
| CTTTCAAAAGCCGCCATGAC+TGG | - | 16930:77694-77713 | MS.gene77085:intron | 50.0% | |
| GAGCTTCCAGAGTGATCCAT+CGG | + | 16930:78685-78704 | None:intergenic | 50.0% | |
| GCACATCCCATTCTGCGAAA+TGG | - | 16930:76816-76835 | MS.gene77085:CDS | 50.0% | |
| GGTTCTTGCCAAGGCTTATG+TGG | - | 16930:77597-77616 | MS.gene77085:intron | 50.0% | |
| TGGCAAGAGAAGAATGCCGA+TGG | - | 16930:78666-78685 | MS.gene77085:intron | 50.0% | |
| TTGAGCTAAGCTCCCATGCT+AGG | + | 16930:77651-77670 | None:intergenic | 50.0% | |
| ! | GACCGGAGATGGCATGTTTT+AGG | - | 16930:78756-78775 | MS.gene77085:intron | 50.0% |
| ! | GATGGATCACTCTGGAAGCT+CGG | - | 16930:78684-78703 | MS.gene77085:intron | 50.0% |
| ! | GTAACCGACGGTGTCAACTA+TGG | - | 16930:78132-78151 | MS.gene77085:intron | 50.0% |
| ! | TCCGAGAGTTTTTGCAGGGA+AGG | + | 16930:77970-77989 | None:intergenic | 50.0% |
| ACATGCCATCTCCGGTCAAG+CGG | + | 16930:78753-78772 | None:intergenic | 55.0% | |
| ATGCTGATCCGTTAGCCGGA+GGG | + | 16930:78007-78026 | None:intergenic | 55.0% | |
| GAGAAACTCCCTCCGGCTAA+CGG | - | 16930:77996-78015 | MS.gene77085:intron | 55.0% | |
| TCGGGTCCAACATACCCTTC+TGG | - | 16930:76043-76062 | MS.gene77085:CDS | 55.0% | |
| AATGACCACGCGCATGCCTG+TGG | + | 16930:78582-78601 | None:intergenic | 60.0% | |
| CAGGCATGCGCGTGGTCATT+AGG | - | 16930:78582-78601 | MS.gene77085:intron | 60.0% | |
| CCATCTCCGGTCAAGCGGTT+CGG | + | 16930:78748-78767 | None:intergenic | 60.0% | |
| GATGCTGATCCGTTAGCCGG+AGG | + | 16930:78008-78027 | None:intergenic | 60.0% | |
| GTTTGGCCGAACCGCTTGAC+CGG | - | 16930:78739-78758 | MS.gene77085:intron | 60.0% | |
| TTGATCCACAGGCATGCGCG+TGG | - | 16930:78574-78593 | MS.gene77085:intron | 60.0% | |
| ! | AGTTTCGGCGCCCGATTCGA+CGG | - | 16930:75931-75950 | MS.gene77085:CDS | 60.0% |
| CCGAACCGCTTGACCGGAGA+TGG | - | 16930:78745-78764 | MS.gene77085:intron | 65.0% | |
| ! | GGCGTCGGGCTGCTGAGTTT+CGG | - | 16930:75916-75935 | MS.gene77085:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 16930 | gene | 75906 | 78950 | 75906 | ID=MS.gene77085 |
| 16930 | mRNA | 75906 | 78950 | 75906 | ID=MS.gene77085.t1;Parent=MS.gene77085 |
| 16930 | exon | 78792 | 78950 | 78792 | ID=MS.gene77085.t1.exon1;Parent=MS.gene77085.t1 |
| 16930 | CDS | 78792 | 78950 | 78792 | ID=cds.MS.gene77085.t1;Parent=MS.gene77085.t1 |
| 16930 | exon | 75906 | 77360 | 75906 | ID=MS.gene77085.t1.exon2;Parent=MS.gene77085.t1 |
| 16930 | CDS | 75906 | 77360 | 75906 | ID=cds.MS.gene77085.t1;Parent=MS.gene77085.t1 |
| Gene Sequence |
| Protein sequence |
