Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77399.t1 | RHN46510.1 | 97.6 | 371 | 9 | 0 | 1 | 371 | 219 | 589 | 1.60E-212 | 748.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77399.t1 | P51851 | 95.7 | 371 | 16 | 0 | 1 | 371 | 35 | 405 | 5.6e-211 | 734.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77399.t1 | G7KSB5 | 97.6 | 371 | 9 | 0 | 1 | 371 | 235 | 605 | 1.1e-212 | 748.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050444 | MS.gene77399 | -0.802386 | 5.75E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77399.t1 | MTR_7g069540 | 97.574 | 371 | 9 | 0 | 1 | 371 | 235 | 605 | 0.0 | 759 |
| MS.gene77399.t1 | MTR_4g017200 | 88.949 | 371 | 41 | 0 | 1 | 371 | 237 | 607 | 0.0 | 683 |
| MS.gene77399.t1 | MTR_5g046610 | 88.679 | 371 | 42 | 0 | 1 | 371 | 237 | 607 | 0.0 | 682 |
| MS.gene77399.t1 | MTR_7g069500 | 86.253 | 371 | 23 | 2 | 1 | 371 | 233 | 575 | 0.0 | 640 |
| MS.gene77399.t1 | MTR_2g015560 | 79.730 | 370 | 75 | 0 | 2 | 371 | 213 | 582 | 0.0 | 614 |
| MS.gene77399.t1 | MTR_2g009330 | 68.750 | 368 | 115 | 0 | 1 | 368 | 242 | 609 | 0.0 | 552 |
| MS.gene77399.t1 | MTR_5g046620 | 50.207 | 241 | 43 | 5 | 1 | 240 | 1 | 165 | 5.65e-66 | 206 |
| MS.gene77399.t1 | MTR_1g011530 | 59.649 | 57 | 20 | 1 | 117 | 173 | 31 | 84 | 1.64e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77399.t1 | AT5G54960 | 87.332 | 371 | 47 | 0 | 1 | 371 | 237 | 607 | 0.0 | 693 |
| MS.gene77399.t1 | AT4G33070 | 85.714 | 371 | 53 | 0 | 1 | 371 | 237 | 607 | 0.0 | 679 |
| MS.gene77399.t1 | AT5G01320 | 86.253 | 371 | 51 | 0 | 1 | 371 | 233 | 603 | 0.0 | 677 |
| MS.gene77399.t1 | AT5G01330 | 85.366 | 369 | 54 | 0 | 3 | 371 | 224 | 592 | 0.0 | 668 |
Find 92 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCATTTCATTGGAACTTAT+TGG | 0.122987 | 7.3:-35649956 | MS.gene77399:CDS |
| CTGAAGTATTACTGAGGATT+TGG | 0.201502 | 7.3:+35648769 | None:intergenic |
| CCATTTCATTGGAACTTATT+GGG | 0.218907 | 7.3:-35649955 | MS.gene77399:CDS |
| TTAACTCTCAAAGGTTCTTT+TGG | 0.268831 | 7.3:+35649639 | None:intergenic |
| CCCAATAAGTTCCAATGAAA+TGG | 0.289567 | 7.3:+35649955 | None:intergenic |
| TGAAGTATTACTGAGGATTT+GGG | 0.289917 | 7.3:+35648770 | None:intergenic |
| TGTATCCGCCATTATTTATC+AGG | 0.290602 | 7.3:+35649160 | None:intergenic |
| CCTCAGGCAATTTCAACTTT+TGG | 0.294722 | 7.3:+35649535 | None:intergenic |
| GACTTCAAAGGTTTCCCATT+TGG | 0.322846 | 7.3:+35649666 | None:intergenic |
| GCTGATGCATACTTGTTTGC+TGG | 0.330059 | 7.3:-35649891 | MS.gene77399:CDS |
| CATAGGATATTTGTTCCAAA+TGG | 0.336215 | 7.3:-35649681 | MS.gene77399:CDS |
| CAAATGCAATATGGCTCAAT+TGG | 0.339341 | 7.3:-35649413 | MS.gene77399:CDS |
| ATCATCTTCCTGATAAATAA+TGG | 0.361652 | 7.3:-35649168 | MS.gene77399:CDS |
| ATGAAATGGGGATGGTGCTC+AGG | 0.369145 | 7.3:+35649969 | None:intergenic |
| GATCGGGTTGTGATTCCTAA+TGG | 0.370589 | 7.3:-35649792 | MS.gene77399:CDS |
| ATTCCTAATGGACCTTCATT+TGG | 0.374927 | 7.3:-35649780 | MS.gene77399:CDS |
| ATCTGATGCCTTTGTCGAAC+TGG | 0.388724 | 7.3:-35650045 | MS.gene77399:CDS |
| CAGTTCTTGATAACATTGTA+TGG | 0.391023 | 7.3:+35649111 | None:intergenic |
| CCAATAAGTTCCAATGAAAT+GGG | 0.391316 | 7.3:+35649956 | None:intergenic |
| CATCCAAATGAAGGTCCATT+AGG | 0.391659 | 7.3:+35649777 | None:intergenic |
| GAGCACCATCCCCATTTCAT+TGG | 0.394834 | 7.3:-35649966 | MS.gene77399:CDS |
| TATGAGTTTCAAATGCAATA+TGG | 0.409320 | 7.3:-35649422 | MS.gene77399:CDS |
| GAAGCAATTGCAACAGCAAC+AGG | 0.414187 | 7.3:-35648901 | MS.gene77399:CDS |
| GACGCTTCGCAAGTGCCTTA+AGG | 0.428488 | 7.3:+35649736 | None:intergenic |
| ACAACATTTGTTGTATATGT+TGG | 0.429950 | 7.3:+35649607 | None:intergenic |
| CGATTATTGTTGAGCCCGAT+CGG | 0.432510 | 7.3:-35649809 | MS.gene77399:CDS |
| CATACAATGTTATCAAGAAC+TGG | 0.450936 | 7.3:-35649110 | MS.gene77399:CDS |
| GATTATTGTTGAGCCCGATC+GGG | 0.458460 | 7.3:-35649808 | MS.gene77399:CDS |
| AAACATAAGCTATCTTTCTC+TGG | 0.459117 | 7.3:+35648877 | None:intergenic |
| ATTATTTATCAGGAAGATGA+TGG | 0.461795 | 7.3:+35649170 | None:intergenic |
| CATTGAAGTGATTGTTCACA+AGG | 0.466013 | 7.3:-35648854 | MS.gene77399:CDS |
| GTTGATGAATGATTTCCTTA+AGG | 0.466656 | 7.3:-35649751 | MS.gene77399:CDS |
| ATAGGATATTTGTTCCAAAT+GGG | 0.475146 | 7.3:-35649680 | MS.gene77399:CDS |
| TGGTCTGTTGGTGCAACTCT+TGG | 0.476946 | 7.3:-35649389 | MS.gene77399:CDS |
| CCGTGATGCCATCAGCTAAA+GGG | 0.477384 | 7.3:-35649998 | MS.gene77399:CDS |
| CATTTCATTGGAACTTATTG+GGG | 0.478426 | 7.3:-35649954 | MS.gene77399:CDS |
| TTAACGACTACAGTTCTGTT+GGG | 0.482833 | 7.3:-35649860 | MS.gene77399:CDS |
| TTGAAATTGCCTGAGGGATG+TGG | 0.492977 | 7.3:-35649528 | MS.gene77399:CDS |
| TTAGGAATCACAACCCGATC+GGG | 0.494043 | 7.3:+35649795 | None:intergenic |
| TGCATTCTGTGCTGAGATTG+TGG | 0.494314 | 7.3:-35649919 | MS.gene77399:CDS |
| GCCGTGATGCCATCAGCTAA+AGG | 0.496857 | 7.3:-35649999 | MS.gene77399:CDS |
| GGCTCAATTGGATGGTCTGT+TGG | 0.501951 | 7.3:-35649401 | MS.gene77399:CDS |
| GCTATTGGCAGCAGAGACTC+TGG | 0.502262 | 7.3:+35648798 | None:intergenic |
| ACAAATGTTGTCTAGTGAAA+CGG | 0.504682 | 7.3:-35649595 | MS.gene77399:CDS |
| TGCAATATGGCTCAATTGGA+TGG | 0.506275 | 7.3:-35649409 | MS.gene77399:CDS |
| ATTGAGGTTGAAATTCATGA+TGG | 0.507826 | 7.3:-35649135 | MS.gene77399:CDS |
| TTTAACGACTACAGTTCTGT+TGG | 0.512794 | 7.3:-35649861 | MS.gene77399:CDS |
| TTAGGACCACCTACTAGTAC+AGG | 0.512847 | 7.3:+35650086 | None:intergenic |
| CATTTGGAACAAATATCCTA+TGG | 0.518266 | 7.3:+35649682 | None:intergenic |
| AACATAACATTAACTCTCAA+AGG | 0.524430 | 7.3:+35649630 | None:intergenic |
| AAGCGAATAATTGCTTGCAT+TGG | 0.533361 | 7.3:-35649344 | MS.gene77399:CDS |
| AAGCAAAGAGTTGCTTGAGT+GGG | 0.534030 | 7.3:-35648824 | MS.gene77399:CDS |
| ACGGTTGTGATTGCTGAGAC+GGG | 0.535250 | 7.3:-35649576 | MS.gene77399:CDS |
| AGCGCTTACCCACATCCCTC+AGG | 0.540837 | 7.3:+35649519 | None:intergenic |
| ATCAACACACATCCAAATGA+AGG | 0.547911 | 7.3:+35649768 | None:intergenic |
| GGTTGTGATTGCTGAGACGG+GGG | 0.553648 | 7.3:-35649574 | MS.gene77399:CDS |
| GCAGTGAAGCCTGTACTAGT+AGG | 0.561087 | 7.3:-35650095 | MS.gene77399:CDS |
| ATTAGGAATCACAACCCGAT+CGG | 0.563366 | 7.3:+35649794 | None:intergenic |
| ATAATTGCTTGCATTGGTGA+TGG | 0.566797 | 7.3:-35649338 | MS.gene77399:CDS |
| TGAAATGGGGATGGTGCTCA+GGG | 0.568384 | 7.3:+35649970 | None:intergenic |
| AACGGTTGTGATTGCTGAGA+CGG | 0.568757 | 7.3:-35649577 | MS.gene77399:CDS |
| CAAGCAAAGAGTTGCTTGAG+TGG | 0.571229 | 7.3:-35648825 | MS.gene77399:CDS |
| ATTGACTAACCAGATGGGGT+TGG | 0.572238 | 7.3:-35650156 | None:intergenic |
| GGGACCATCCCTTTAGCTGA+TGG | 0.572399 | 7.3:+35649990 | None:intergenic |
| GATGCAATTCACAACGGTGA+AGG | 0.573496 | 7.3:-35649069 | MS.gene77399:CDS |
| CCCTTTAGCTGATGGCATCA+CGG | 0.575591 | 7.3:+35649998 | None:intergenic |
| ACAACGGTGAAGGAAAATGT+TGG | 0.577339 | 7.3:-35649059 | MS.gene77399:CDS |
| CGCATCTGCCAGTTCGACAA+AGG | 0.582374 | 7.3:+35650037 | None:intergenic |
| ATCAAGAACTGGAATTACAC+TGG | 0.587582 | 7.3:-35649099 | MS.gene77399:CDS |
| TTGCATATGAAAATTACCAT+AGG | 0.592094 | 7.3:-35649698 | MS.gene77399:CDS |
| AGCAAAGAGTTGCTTGAGTG+GGG | 0.601698 | 7.3:-35648823 | MS.gene77399:CDS |
| CGGTTGTGATTGCTGAGACG+GGG | 0.606636 | 7.3:-35649575 | MS.gene77399:CDS |
| GTCGAACTGGCAGATGCGAG+TGG | 0.610851 | 7.3:-35650032 | MS.gene77399:CDS |
| AGGAAAATGTTGGACTACCA+AGG | 0.615414 | 7.3:-35649049 | MS.gene77399:intron |
| GAAGTATTACTGAGGATTTG+GGG | 0.618194 | 7.3:+35648771 | None:intergenic |
| AAGTTCCAATGAAATGGGGA+TGG | 0.619469 | 7.3:+35649961 | None:intergenic |
| TAATGGCGGATACACAATTG+AGG | 0.619516 | 7.3:-35649151 | MS.gene77399:CDS |
| GGGGTTGGAAGCAGCAGTTG+AGG | 0.620039 | 7.3:-35650141 | MS.gene77399:CDS |
| CCAAAAGTTGAAATTGCCTG+AGG | 0.627567 | 7.3:-35649535 | MS.gene77399:CDS |
| AGTAGGTGGTCCTAAACTGA+GGG | 0.628023 | 7.3:-35650078 | MS.gene77399:CDS |
| TTTATTGATGCAATTCACAA+CGG | 0.637365 | 7.3:-35649075 | MS.gene77399:CDS |
| TAGTAGGTGGTCCTAAACTG+AGG | 0.652385 | 7.3:-35650079 | MS.gene77399:CDS |
| TGAAATTGCCTGAGGGATGT+GGG | 0.655016 | 7.3:-35649527 | MS.gene77399:intron |
| AGGTGGTCCTAAACTGAGGG+TGG | 0.656562 | 7.3:-35650075 | MS.gene77399:CDS |
| AAGTATTACTGAGGATTTGG+GGG | 0.657168 | 7.3:+35648772 | None:intergenic |
| GATGCCATCAGCTAAAGGGA+TGG | 0.659243 | 7.3:-35649994 | MS.gene77399:CDS |
| CAATAAGTTCCAATGAAATG+GGG | 0.661557 | 7.3:+35649957 | None:intergenic |
| GTGAAGCCTGTACTAGTAGG+TGG | 0.664654 | 7.3:-35650092 | MS.gene77399:CDS |
| ATCTTCCTGATAAATAATGG+CGG | 0.670648 | 7.3:-35649165 | MS.gene77399:CDS |
| CTGATTCTGAAGTATTACTG+AGG | 0.677069 | 7.3:+35648763 | None:intergenic |
| CAAAAGTTGAAATTGCCTGA+GGG | 0.678314 | 7.3:-35649534 | MS.gene77399:CDS |
| ATATCAACAATGCTGCGATG+TGG | 0.681337 | 7.3:-35649201 | MS.gene77399:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATGAGGAATAAT+TGG | + | chr7.3:35649452-35649471 | None:intergenic | 15.0% |
| !! | ATCAGCATATAAAAAAAATG+AGG | + | chr7.3:35649461-35649480 | None:intergenic | 20.0% |
| !! | ATGTAATTTATTCTTGAACA+TGG | - | chr7.3:35649657-35649676 | MS.gene77399:CDS | 20.0% |
| ! | AACATAACATTAACTCTCAA+AGG | + | chr7.3:35649293-35649312 | None:intergenic | 25.0% |
| ! | ATAGGATATTTGTTCCAAAT+GGG | - | chr7.3:35649240-35649259 | MS.gene77399:intron | 25.0% |
| ! | ATCATCTTCCTGATAAATAA+TGG | - | chr7.3:35649752-35649771 | MS.gene77399:CDS | 25.0% |
| ! | ATTATTTATCAGGAAGATGA+TGG | + | chr7.3:35649753-35649772 | None:intergenic | 25.0% |
| ! | TATGAGTTTCAAATGCAATA+TGG | - | chr7.3:35649498-35649517 | MS.gene77399:intron | 25.0% |
| ! | TTGCATATGAAAATTACCAT+AGG | - | chr7.3:35649222-35649241 | MS.gene77399:intron | 25.0% |
| ! | TTTATTGATGCAATTCACAA+CGG | - | chr7.3:35649845-35649864 | MS.gene77399:CDS | 25.0% |
| !! | TCTTAACTAAAATGTTTTGC+AGG | - | chr7.3:35649682-35649701 | MS.gene77399:CDS | 25.0% |
| !!! | ACAACATTTGTTGTATATGT+TGG | + | chr7.3:35649316-35649335 | None:intergenic | 25.0% |
| AAACATAAGCTATCTTTCTC+TGG | + | chr7.3:35650046-35650065 | None:intergenic | 30.0% | |
| AACTGTAGTCGTTAAAAATG+GGG | + | chr7.3:35649055-35649074 | None:intergenic | 30.0% | |
| ACAAATGTTGTCTAGTGAAA+CGG | - | chr7.3:35649325-35649344 | MS.gene77399:intron | 30.0% | |
| AGAACTGTAGTCGTTAAAAA+TGG | + | chr7.3:35649057-35649076 | None:intergenic | 30.0% | |
| ATCTTCCTGATAAATAATGG+CGG | - | chr7.3:35649755-35649774 | MS.gene77399:CDS | 30.0% | |
| ATTGAGGTTGAAATTCATGA+TGG | - | chr7.3:35649785-35649804 | MS.gene77399:CDS | 30.0% | |
| CAATAAGTTCCAATGAAATG+GGG | + | chr7.3:35648966-35648985 | None:intergenic | 30.0% | |
| CATACAATGTTATCAAGAAC+TGG | - | chr7.3:35649810-35649829 | MS.gene77399:CDS | 30.0% | |
| CATAGGATATTTGTTCCAAA+TGG | - | chr7.3:35649239-35649258 | MS.gene77399:intron | 30.0% | |
| CATTTCATTGGAACTTATTG+GGG | - | chr7.3:35648966-35648985 | MS.gene77399:intron | 30.0% | |
| CCAATAAGTTCCAATGAAAT+GGG | + | chr7.3:35648967-35648986 | None:intergenic | 30.0% | |
| CCATTTCATTGGAACTTATT+GGG | - | chr7.3:35648965-35648984 | MS.gene77399:intron | 30.0% | |
| GAACTGTAGTCGTTAAAAAT+GGG | + | chr7.3:35649056-35649075 | None:intergenic | 30.0% | |
| GCTGATAAAATCTTGTTGAT+AGG | - | chr7.3:35649475-35649494 | MS.gene77399:intron | 30.0% | |
| ! | CAGTTCTTGATAACATTGTA+TGG | + | chr7.3:35649812-35649831 | None:intergenic | 30.0% |
| ! | CATTTGGAACAAATATCCTA+TGG | + | chr7.3:35649241-35649260 | None:intergenic | 30.0% |
| ! | GTTGATGAATGATTTCCTTA+AGG | - | chr7.3:35649169-35649188 | MS.gene77399:CDS | 30.0% |
| ! | TTAACTCTCAAAGGTTCTTT+TGG | + | chr7.3:35649284-35649303 | None:intergenic | 30.0% |
| !!! | TCATGCATGCTTTATTTTTC+AGG | - | chr7.3:35649973-35649992 | MS.gene77399:CDS | 30.0% |
| AAGCGAATAATTGCTTGCAT+TGG | - | chr7.3:35649576-35649595 | MS.gene77399:CDS | 35.0% | |
| ATCAACACACATCCAAATGA+AGG | + | chr7.3:35649155-35649174 | None:intergenic | 35.0% | |
| ATCAAGAACTGGAATTACAC+TGG | - | chr7.3:35649821-35649840 | MS.gene77399:CDS | 35.0% | |
| ATCTATGTGATCGAACAAGT+TGG | + | chr7.3:35649935-35649954 | None:intergenic | 35.0% | |
| CAAAAGTTGAAATTGCCTGA+GGG | - | chr7.3:35649386-35649405 | MS.gene77399:CDS | 35.0% | |
| CAAATGCAATATGGCTCAAT+TGG | - | chr7.3:35649507-35649526 | MS.gene77399:intron | 35.0% | |
| CATTGAAGTGATTGTTCACA+AGG | - | chr7.3:35650066-35650085 | MS.gene77399:CDS | 35.0% | |
| CCCAATAAGTTCCAATGAAA+TGG | + | chr7.3:35648968-35648987 | None:intergenic | 35.0% | |
| CCCATTTCATTGGAACTTAT+TGG | - | chr7.3:35648964-35648983 | MS.gene77399:intron | 35.0% | |
| TGTATCCGCCATTATTTATC+AGG | + | chr7.3:35649763-35649782 | None:intergenic | 35.0% | |
| TTAACGACTACAGTTCTGTT+GGG | - | chr7.3:35649060-35649079 | MS.gene77399:CDS | 35.0% | |
| TTTAACGACTACAGTTCTGT+TGG | - | chr7.3:35649059-35649078 | MS.gene77399:CDS | 35.0% | |
| ! | ATAATTGCTTGCATTGGTGA+TGG | - | chr7.3:35649582-35649601 | MS.gene77399:CDS | 35.0% |
| ! | ATTCCTAATGGACCTTCATT+TGG | - | chr7.3:35649140-35649159 | MS.gene77399:CDS | 35.0% |
| !! | AAGCAATTATTCGCTTTTCG+GGG | + | chr7.3:35649572-35649591 | None:intergenic | 35.0% |
| !! | CAAGCAATTATTCGCTTTTC+GGG | + | chr7.3:35649573-35649592 | None:intergenic | 35.0% |
| !! | GCAAGCAATTATTCGCTTTT+CGG | + | chr7.3:35649574-35649593 | None:intergenic | 35.0% |
| !!! | TTTTCAGGTATTCTGTGAAG+AGG | - | chr7.3:35649988-35650007 | MS.gene77399:CDS | 35.0% |
| AAGCAAAGAGTTGCTTGAGT+GGG | - | chr7.3:35650096-35650115 | MS.gene77399:CDS | 40.0% | |
| AAGTTCCAATGAAATGGGGA+TGG | + | chr7.3:35648962-35648981 | None:intergenic | 40.0% | |
| ACAACGGTGAAGGAAAATGT+TGG | - | chr7.3:35649861-35649880 | MS.gene77399:CDS | 40.0% | |
| AGGAAAATGTTGGACTACCA+AGG | - | chr7.3:35649871-35649890 | MS.gene77399:CDS | 40.0% | |
| ATATCAACAATGCTGCGATG+TGG | - | chr7.3:35649719-35649738 | MS.gene77399:CDS | 40.0% | |
| ATTAGGAATCACAACCCGAT+CGG | + | chr7.3:35649129-35649148 | None:intergenic | 40.0% | |
| CATCCAAATGAAGGTCCATT+AGG | + | chr7.3:35649146-35649165 | None:intergenic | 40.0% | |
| CCAAAAGTTGAAATTGCCTG+AGG | - | chr7.3:35649385-35649404 | MS.gene77399:CDS | 40.0% | |
| GACTTCAAAGGTTTCCCATT+TGG | + | chr7.3:35649257-35649276 | None:intergenic | 40.0% | |
| TGCAATATGGCTCAATTGGA+TGG | - | chr7.3:35649511-35649530 | MS.gene77399:intron | 40.0% | |
| ! | CCTCAGGCAATTTCAACTTT+TGG | + | chr7.3:35649388-35649407 | None:intergenic | 40.0% |
| !! | TAATGGCGGATACACAATTG+AGG | - | chr7.3:35649769-35649788 | MS.gene77399:CDS | 40.0% |
| !!! | CATTGGTGATGGAAGTTTTC+AGG | - | chr7.3:35649593-35649612 | MS.gene77399:CDS | 40.0% |
| !!! | TCTTTTGGCTCAGACTTCAA+AGG | + | chr7.3:35649269-35649288 | None:intergenic | 40.0% |
| AACGGTTGTGATTGCTGAGA+CGG | - | chr7.3:35649343-35649362 | MS.gene77399:CDS | 45.0% | |
| AGCAAAGAGTTGCTTGAGTG+GGG | - | chr7.3:35650097-35650116 | MS.gene77399:CDS | 45.0% | |
| AGTAGGTGGTCCTAAACTGA+GGG | - | chr7.3:35648842-35648861 | MS.gene77399:CDS | 45.0% | |
| ATCTGATGCCTTTGTCGAAC+TGG | - | chr7.3:35648875-35648894 | MS.gene77399:CDS | 45.0% | |
| CAAGCAAAGAGTTGCTTGAG+TGG | - | chr7.3:35650095-35650114 | MS.gene77399:CDS | 45.0% | |
| CGATTATTGTTGAGCCCGAT+CGG | - | chr7.3:35649111-35649130 | MS.gene77399:CDS | 45.0% | |
| GAAGCAATTGCAACAGCAAC+AGG | - | chr7.3:35650019-35650038 | MS.gene77399:CDS | 45.0% | |
| GATGCAATTCACAACGGTGA+AGG | - | chr7.3:35649851-35649870 | MS.gene77399:CDS | 45.0% | |
| GATTATTGTTGAGCCCGATC+GGG | - | chr7.3:35649112-35649131 | MS.gene77399:CDS | 45.0% | |
| GCTGATGCATACTTGTTTGC+TGG | - | chr7.3:35649029-35649048 | MS.gene77399:intron | 45.0% | |
| TAGTAGGTGGTCCTAAACTG+AGG | - | chr7.3:35648841-35648860 | MS.gene77399:CDS | 45.0% | |
| TGAAATTGCCTGAGGGATGT+GGG | - | chr7.3:35649393-35649412 | MS.gene77399:CDS | 45.0% | |
| TGCATTCTGTGCTGAGATTG+TGG | - | chr7.3:35649001-35649020 | MS.gene77399:intron | 45.0% | |
| TTAGGAATCACAACCCGATC+GGG | + | chr7.3:35649128-35649147 | None:intergenic | 45.0% | |
| TTAGGACCACCTACTAGTAC+AGG | + | chr7.3:35648837-35648856 | None:intergenic | 45.0% | |
| TTGAAATTGCCTGAGGGATG+TGG | - | chr7.3:35649392-35649411 | MS.gene77399:CDS | 45.0% | |
| ! | GATCGGGTTGTGATTCCTAA+TGG | - | chr7.3:35649128-35649147 | MS.gene77399:CDS | 45.0% |
| ACGGTTGTGATTGCTGAGAC+GGG | - | chr7.3:35649344-35649363 | MS.gene77399:CDS | 50.0% | |
| ATGAAATGGGGATGGTGCTC+AGG | + | chr7.3:35648954-35648973 | None:intergenic | 50.0% | |
| CACTGTCAAGAGACTCACCT+TGG | + | chr7.3:35649891-35649910 | None:intergenic | 50.0% | |
| CCCTTTAGCTGATGGCATCA+CGG | + | chr7.3:35648925-35648944 | None:intergenic | 50.0% | |
| CCGTGATGCCATCAGCTAAA+GGG | - | chr7.3:35648922-35648941 | MS.gene77399:CDS | 50.0% | |
| GAGCACCATCCCCATTTCAT+TGG | - | chr7.3:35648954-35648973 | MS.gene77399:intron | 50.0% | |
| GATGCCATCAGCTAAAGGGA+TGG | - | chr7.3:35648926-35648945 | MS.gene77399:CDS | 50.0% | |
| GCAGTGAAGCCTGTACTAGT+AGG | - | chr7.3:35648825-35648844 | MS.gene77399:CDS | 50.0% | |
| GGCTCAATTGGATGGTCTGT+TGG | - | chr7.3:35649519-35649538 | MS.gene77399:intron | 50.0% | |
| GTGAAGCCTGTACTAGTAGG+TGG | - | chr7.3:35648828-35648847 | MS.gene77399:CDS | 50.0% | |
| TGAAATGGGGATGGTGCTCA+GGG | + | chr7.3:35648953-35648972 | None:intergenic | 50.0% | |
| TGGTCTGTTGGTGCAACTCT+TGG | - | chr7.3:35649531-35649550 | MS.gene77399:CDS | 50.0% | |
| ! | GCTTTTGCCACCCTCAGTTT+AGG | + | chr7.3:35648855-35648874 | None:intergenic | 50.0% |
| AGGATTTGGGGGACGGCTAT+TGG | + | chr7.3:35650140-35650159 | None:intergenic | 55.0% | |
| AGGTGGTCCTAAACTGAGGG+TGG | - | chr7.3:35648845-35648864 | MS.gene77399:CDS | 55.0% | |
| CGCATCTGCCAGTTCGACAA+AGG | + | chr7.3:35648886-35648905 | None:intergenic | 55.0% | |
| CGGTTGTGATTGCTGAGACG+GGG | - | chr7.3:35649345-35649364 | MS.gene77399:CDS | 55.0% | |
| GACGCTTCGCAAGTGCCTTA+AGG | + | chr7.3:35649187-35649206 | None:intergenic | 55.0% | |
| GCCGTGATGCCATCAGCTAA+AGG | - | chr7.3:35648921-35648940 | MS.gene77399:CDS | 55.0% | |
| GCTATTGGCAGCAGAGACTC+TGG | + | chr7.3:35650125-35650144 | None:intergenic | 55.0% | |
| GGGACCATCCCTTTAGCTGA+TGG | + | chr7.3:35648933-35648952 | None:intergenic | 55.0% | |
| GGTTGTGATTGCTGAGACGG+GGG | - | chr7.3:35649346-35649365 | MS.gene77399:CDS | 55.0% | |
| AGCGCTTACCCACATCCCTC+AGG | + | chr7.3:35649404-35649423 | None:intergenic | 60.0% | |
| GGGGTTGGAAGCAGCAGTTG+AGG | - | chr7.3:35648779-35648798 | MS.gene77399:CDS | 60.0% | |
| GTCGAACTGGCAGATGCGAG+TGG | - | chr7.3:35648888-35648907 | MS.gene77399:CDS | 60.0% | |
| TTGCTGAGACGGGGGACTCA+TGG | - | chr7.3:35649354-35649373 | MS.gene77399:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 35648777 | 35650165 | 35648777 | ID=MS.gene77399 |
| chr7.3 | mRNA | 35648777 | 35650165 | 35648777 | ID=MS.gene77399.t1;Parent=MS.gene77399 |
| chr7.3 | exon | 35649528 | 35650165 | 35649528 | ID=MS.gene77399.t1.exon1;Parent=MS.gene77399.t1 |
| chr7.3 | CDS | 35649528 | 35650165 | 35649528 | ID=cds.MS.gene77399.t1;Parent=MS.gene77399.t1 |
| chr7.3 | exon | 35649328 | 35649445 | 35649328 | ID=MS.gene77399.t1.exon2;Parent=MS.gene77399.t1 |
| chr7.3 | CDS | 35649328 | 35649445 | 35649328 | ID=cds.MS.gene77399.t1;Parent=MS.gene77399.t1 |
| chr7.3 | exon | 35649050 | 35649238 | 35649050 | ID=MS.gene77399.t1.exon3;Parent=MS.gene77399.t1 |
| chr7.3 | CDS | 35649050 | 35649238 | 35649050 | ID=cds.MS.gene77399.t1;Parent=MS.gene77399.t1 |
| chr7.3 | exon | 35648777 | 35648947 | 35648777 | ID=MS.gene77399.t1.exon4;Parent=MS.gene77399.t1 |
| chr7.3 | CDS | 35648777 | 35648947 | 35648777 | ID=cds.MS.gene77399.t1;Parent=MS.gene77399.t1 |
| Gene Sequence |
| Protein sequence |
