Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77802.t1 | XP_003628140.2 | 98.3 | 288 | 5 | 0 | 1 | 288 | 8 | 295 | 3.60E-164 | 587.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77802.t1 | Q9ZNT1 | 65.3 | 277 | 94 | 2 | 14 | 288 | 5 | 281 | 8.5e-106 | 384.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77802.t1 | B7FJK4 | 98.3 | 288 | 5 | 0 | 1 | 288 | 8 | 295 | 2.6e-164 | 587.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049239 | MS.gene77802 | 0.850328 | 1.82E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77802.t1 | MTR_8g044160 | 98.264 | 288 | 5 | 0 | 1 | 288 | 8 | 295 | 0.0 | 588 |
| MS.gene77802.t1 | MTR_3g079510 | 67.266 | 278 | 90 | 1 | 12 | 288 | 1 | 278 | 1.35e-141 | 400 |
| MS.gene77802.t1 | MTR_3g479590 | 67.266 | 278 | 90 | 1 | 12 | 288 | 1 | 278 | 1.35e-141 | 400 |
| MS.gene77802.t1 | MTR_7g087090 | 66.534 | 251 | 84 | 0 | 38 | 288 | 28 | 278 | 2.46e-130 | 371 |
| MS.gene77802.t1 | MTR_4g114030 | 40.678 | 295 | 139 | 7 | 28 | 288 | 33 | 325 | 5.90e-66 | 209 |
| MS.gene77802.t1 | MTR_5g059820 | 39.526 | 253 | 132 | 5 | 48 | 280 | 624 | 875 | 1.28e-51 | 181 |
| MS.gene77802.t1 | MTR_3g073180 | 38.846 | 260 | 134 | 8 | 48 | 284 | 642 | 899 | 8.31e-49 | 173 |
| MS.gene77802.t1 | MTR_3g073150 | 36.680 | 259 | 140 | 6 | 43 | 280 | 612 | 867 | 3.09e-47 | 169 |
| MS.gene77802.t1 | MTR_4g113900 | 37.234 | 94 | 51 | 2 | 105 | 196 | 91 | 178 | 5.05e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77802.t1 | AT5G17770 | 67.331 | 251 | 82 | 0 | 38 | 288 | 31 | 281 | 1.19e-131 | 375 |
| MS.gene77802.t1 | AT5G20080 | 40.506 | 316 | 156 | 6 | 3 | 288 | 15 | 328 | 3.39e-69 | 218 |
| MS.gene77802.t1 | AT1G37130 | 38.224 | 259 | 138 | 6 | 49 | 286 | 657 | 914 | 8.21e-49 | 174 |
| MS.gene77802.t1 | AT1G77760 | 35.968 | 253 | 140 | 6 | 49 | 280 | 657 | 908 | 3.92e-46 | 166 |
Find 75 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTTCATTTGTCTAAAA+TGG | 0.154232 | 8.1:-60618522 | None:intergenic |
| TGTCTTTCACGTTCTTAATA+AGG | 0.198260 | 8.1:+60619517 | MS.gene77802:CDS |
| GGCAATTAAACCTGGATATC+AGG | 0.207511 | 8.1:-60619867 | None:intergenic |
| ATTGCACCATTTAGAATTTC+AGG | 0.220278 | 8.1:-60617131 | None:intergenic |
| TCCTACTCCTAATTCGATAT+TGG | 0.222016 | 8.1:+60617806 | MS.gene77802:CDS |
| ATCACATTGGATTCAGATAT+TGG | 0.246714 | 8.1:+60618319 | MS.gene77802:CDS |
| ACACCACCATTCCATTTATT+AGG | 0.270818 | 8.1:-60619795 | None:intergenic |
| AATTTGAATCTTGCAGTATT+GGG | 0.275757 | 8.1:-60617777 | None:intergenic |
| GTTACAAACCTGGTCAAGTT+AGG | 0.279037 | 8.1:+60618754 | MS.gene77802:CDS |
| TTTGACAGCCTCCTAATAAA+TGG | 0.283114 | 8.1:+60619784 | MS.gene77802:intron |
| AGGCATTACCCCAATGTTTC+AGG | 0.287455 | 8.1:+60618803 | MS.gene77802:CDS |
| GGAAGTCCCAATATCGAATT+AGG | 0.287589 | 8.1:-60617813 | None:intergenic |
| CCTGGTCAAGTTAGGGCATT+TGG | 0.298742 | 8.1:+60618762 | MS.gene77802:CDS |
| CTGTCACATTGGCGTAAATA+AGG | 0.315077 | 8.1:-60619158 | None:intergenic |
| GGAATGATTGCTGGAGGTTC+AGG | 0.322357 | 8.1:+60618783 | MS.gene77802:CDS |
| CCTACTCCTAATTCGATATT+GGG | 0.343680 | 8.1:+60617807 | MS.gene77802:CDS |
| TTGGAGCCTGAAATTCTAAA+TGG | 0.359265 | 8.1:+60617125 | MS.gene77802:CDS |
| AGTTGCTATGGCTTTATTCA+TGG | 0.365210 | 8.1:-60620021 | None:intergenic |
| TTCATTTGTACCTGAAACAT+TGG | 0.379448 | 8.1:-60618813 | None:intergenic |
| AAATTTGAATCTTGCAGTAT+TGG | 0.382351 | 8.1:-60617778 | None:intergenic |
| TCATTTGTACCTGAAACATT+GGG | 0.390761 | 8.1:-60618812 | None:intergenic |
| AGGGCATTTGGAATGATTGC+TGG | 0.412351 | 8.1:+60618774 | MS.gene77802:CDS |
| AGCACCTGCCCCTGATATCC+AGG | 0.426304 | 8.1:+60619857 | MS.gene77802:CDS |
| TGGATATCAGGGGCAGGTGC+TGG | 0.440181 | 8.1:-60619855 | None:intergenic |
| TGCAGTATTGGGGCTGATCA+TGG | 0.440697 | 8.1:-60617766 | None:intergenic |
| ATATCTGAATCCAATGTGAT+TGG | 0.441409 | 8.1:-60618316 | None:intergenic |
| TTATGTAGGTTACCTTTAGT+AGG | 0.448970 | 8.1:-60619191 | None:intergenic |
| GGCTCCAAGTTCTGAGCAAA+AGG | 0.457665 | 8.1:-60617110 | None:intergenic |
| CCTTCATTTGTCTAAAATGG+TGG | 0.459897 | 8.1:-60618519 | None:intergenic |
| CCAAATGCCCTAACTTGACC+AGG | 0.467529 | 8.1:-60618762 | None:intergenic |
| TCGATATTGGGACTTCCTGT+TGG | 0.490436 | 8.1:+60617819 | MS.gene77802:CDS |
| TCTTGTAGCCGTTGGCCTAA+CGG | 0.492080 | 8.1:+60617157 | MS.gene77802:CDS |
| GCAACTCATCTTGCAGCACT+TGG | 0.495897 | 8.1:+60620038 | MS.gene77802:CDS |
| GCAATTAAACCTGGATATCA+GGG | 0.505823 | 8.1:-60619866 | None:intergenic |
| TTACAAACCTGGTCAAGTTA+GGG | 0.508630 | 8.1:+60618755 | MS.gene77802:CDS |
| CTTCATTTGTCTAAAATGGT+GGG | 0.509453 | 8.1:-60618518 | None:intergenic |
| AGTAAATATAAGCAACCGTT+AGG | 0.512828 | 8.1:-60617172 | None:intergenic |
| TGCAAGCAGATGTACCCAAA+TGG | 0.517984 | 8.1:+60618487 | MS.gene77802:intron |
| AGGTGACAACTTGGCCGTGA+AGG | 0.522801 | 8.1:+60618543 | MS.gene77802:CDS |
| CCACCATTCCATTTATTAGG+AGG | 0.525573 | 8.1:-60619792 | None:intergenic |
| GGTGACAACTTGGCCGTGAA+GGG | 0.526514 | 8.1:+60618544 | MS.gene77802:CDS |
| ATGGCTTTATTCATGGGTGG+TGG | 0.526824 | 8.1:-60620014 | None:intergenic |
| GCAATTGCTCTTGTAGCCGT+TGG | 0.529054 | 8.1:+60617149 | MS.gene77802:CDS |
| AATAAATGGAATGGTGGTGT+TGG | 0.539466 | 8.1:+60619798 | MS.gene77802:CDS |
| GATATCGTCCACTGTCACAT+TGG | 0.541108 | 8.1:-60619169 | None:intergenic |
| CTTGGCCGTGAAGGGCCCTA+AGG | 0.541711 | 8.1:+60618552 | MS.gene77802:CDS |
| AAGTACCTTAGGGCCCTTCA+CGG | 0.543318 | 8.1:-60618557 | None:intergenic |
| GTTGCTATGGCTTTATTCAT+GGG | 0.544781 | 8.1:-60620020 | None:intergenic |
| AATGAAGGAAGGTGACAACT+TGG | 0.552525 | 8.1:+60618534 | MS.gene77802:CDS |
| ATAAATGGAATGGTGGTGTT+GGG | 0.556556 | 8.1:+60619799 | MS.gene77802:CDS |
| ATTTGAATCTTGCAGTATTG+GGG | 0.558063 | 8.1:-60617776 | None:intergenic |
| AGTGGACGATATCCTACTAA+AGG | 0.561823 | 8.1:+60619179 | MS.gene77802:CDS |
| TAATAATAACTACACCTTTG+GGG | 0.566489 | 8.1:-60617205 | None:intergenic |
| ATCATATACTCCAATCACAT+TGG | 0.569714 | 8.1:+60618306 | MS.gene77802:CDS |
| TGCTGCAAGATGAGTTGCTA+TGG | 0.575868 | 8.1:-60620033 | None:intergenic |
| CAGCCTCCTAATAAATGGAA+TGG | 0.578707 | 8.1:+60619789 | MS.gene77802:intron |
| TAAACCTGGATATCAGGGGC+AGG | 0.589659 | 8.1:-60619861 | None:intergenic |
| CAAGTTCTGAGCAAAAGGTA+AGG | 0.593264 | 8.1:-60617105 | None:intergenic |
| ATATCGAATTAGGAGTAGGA+AGG | 0.599298 | 8.1:-60617803 | None:intergenic |
| CCCAATATCGAATTAGGAGT+AGG | 0.601609 | 8.1:-60617807 | None:intergenic |
| ATAAGCAACCGTTAGGCCAA+CGG | 0.603303 | 8.1:-60617165 | None:intergenic |
| GCATTTGGAATGATTGCTGG+AGG | 0.605362 | 8.1:+60618777 | MS.gene77802:CDS |
| TATCGAATTAGGAGTAGGAA+GGG | 0.606000 | 8.1:-60617802 | None:intergenic |
| GCTATGGCTTTATTCATGGG+TGG | 0.610095 | 8.1:-60620017 | None:intergenic |
| CATTTGTACCTGAAACATTG+GGG | 0.612740 | 8.1:-60618811 | None:intergenic |
| TGGTGTTGGGTACATATCAA+AGG | 0.615193 | 8.1:+60619812 | MS.gene77802:CDS |
| GGACGTTTCAGTTACAAACC+TGG | 0.618497 | 8.1:+60618744 | MS.gene77802:CDS |
| TATTAAGAACGTGAAAGACA+TGG | 0.621704 | 8.1:-60619514 | None:intergenic |
| AGCAGAGGAAGAGATAGTCA+AGG | 0.623400 | 8.1:+60618268 | MS.gene77802:intron |
| CCTCCTAATAAATGGAATGG+TGG | 0.626581 | 8.1:+60619792 | MS.gene77802:CDS |
| TATTTACGCCAATGTGACAG+TGG | 0.658716 | 8.1:+60619161 | MS.gene77802:CDS |
| AAACCCAAAGGACAAAACAA+AGG | 0.684135 | 8.1:+60619131 | MS.gene77802:CDS |
| CAATTAAACCTGGATATCAG+GGG | 0.687288 | 8.1:-60619865 | None:intergenic |
| AGCCATACTAGAAAACCCAA+AGG | 0.689734 | 8.1:+60619119 | MS.gene77802:CDS |
| TGAAAGACATGGAATCTGTG+AGG | 0.721466 | 8.1:-60619503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTCTTTGAAATTTTT+GGG | - | chr8.1:60617732-60617751 | None:intergenic | 10.0% |
| !!! | TTTAAATTCTTTGAAATTTT+TGG | - | chr8.1:60617733-60617752 | None:intergenic | 10.0% |
| !!! | TTTGTTTTTAAATTATTACT+AGG | - | chr8.1:60619961-60619980 | None:intergenic | 10.0% |
| !! | ATTTATTTGTATAGATTAGA+TGG | - | chr8.1:60619552-60619571 | None:intergenic | 15.0% |
| !! | GAAAATTGATTATTGTTAAT+TGG | - | chr8.1:60619891-60619910 | None:intergenic | 15.0% |
| !! | TTTGCACTTATTTAATAAAA+TGG | - | chr8.1:60619673-60619692 | None:intergenic | 15.0% |
| !!! | ACATTTAATTTTAACTCAAA+TGG | + | chr8.1:60618890-60618909 | MS.gene77802:intron | 15.0% |
| !!! | GTAATTCATTTTAAAAACAT+TGG | - | chr8.1:60617352-60617371 | None:intergenic | 15.0% |
| !!! | TATTTAATAAAATGGATTAG+CGG | - | chr8.1:60619665-60619684 | None:intergenic | 15.0% |
| !! | AATAATAATAACTACACCTT+TGG | - | chr8.1:60617210-60617229 | None:intergenic | 20.0% |
| !! | ACATGATTTCTTAATTATGT+AGG | - | chr8.1:60619208-60619227 | None:intergenic | 20.0% |
| !! | ACTTTCAAACAATTATAACA+TGG | - | chr8.1:60619044-60619063 | None:intergenic | 20.0% |
| !! | ATAATAATAACTACACCTTT+GGG | - | chr8.1:60617209-60617228 | None:intergenic | 20.0% |
| !! | CAAATCTAAATTTGTCAATA+AGG | + | chr8.1:60617921-60617940 | MS.gene77802:intron | 20.0% |
| !! | GTGTTTGCTTAAAAATAAAA+GGG | - | chr8.1:60617994-60618013 | None:intergenic | 20.0% |
| !! | TGAAAATGTAAGTATAACAA+TGG | + | chr8.1:60618704-60618723 | MS.gene77802:intron | 20.0% |
| !! | TTGTATATGTCAATATGAAA+AGG | - | chr8.1:60619917-60619936 | None:intergenic | 20.0% |
| !! | TTGTTACATCTATATATGTT+TGG | + | chr8.1:60619442-60619461 | MS.gene77802:intron | 20.0% |
| !!! | AAAAATTTGTGGACAAATTT+TGG | + | chr8.1:60618369-60618388 | MS.gene77802:intron | 20.0% |
| !!! | AATTTTTATTTTGCCTAAGA+TGG | - | chr8.1:60618587-60618606 | None:intergenic | 20.0% |
| !!! | ATCAAACTTTATTTAACTCT+CGG | + | chr8.1:60618984-60619003 | MS.gene77802:intron | 20.0% |
| !!! | ATTTTTTCAACCAATAATTG+TGG | - | chr8.1:60618024-60618043 | None:intergenic | 20.0% |
| !!! | GTAATCTTTAAAAAATCAAG+CGG | - | chr8.1:60617515-60617534 | None:intergenic | 20.0% |
| !!! | GTATGAATCAAATATTTTCA+TGG | - | chr8.1:60617632-60617651 | None:intergenic | 20.0% |
| !!! | GTTTTTAAATTATTACTAGG+TGG | - | chr8.1:60619958-60619977 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTACATTCGTATT+TGG | - | chr8.1:60619614-60619633 | None:intergenic | 20.0% |
| ! | AAATTTGAATCTTGCAGTAT+TGG | - | chr8.1:60617781-60617800 | None:intergenic | 25.0% |
| ! | AATTTGAATCTTGCAGTATT+GGG | - | chr8.1:60617780-60617799 | None:intergenic | 25.0% |
| ! | ATGTCAATTCTATGTTCAAA+CGG | + | chr8.1:60617474-60617493 | MS.gene77802:intron | 25.0% |
| ! | CTTGAAAAATTAGTCCTTAA+AGG | + | chr8.1:60617602-60617621 | MS.gene77802:intron | 25.0% |
| ! | GATATAATGTATTTGTCAAG+TGG | + | chr8.1:60618150-60618169 | MS.gene77802:intron | 25.0% |
| ! | GGTGTTTGCTTAAAAATAAA+AGG | - | chr8.1:60617995-60618014 | None:intergenic | 25.0% |
| ! | TAAGTATAGCTTAGAATAGT+TGG | - | chr8.1:60617958-60617977 | None:intergenic | 25.0% |
| ! | TAATAATAACTACACCTTTG+GGG | - | chr8.1:60617208-60617227 | None:intergenic | 25.0% |
| ! | TATTACCATAGGAATATAGT+TGG | + | chr8.1:60619271-60619290 | MS.gene77802:intron | 25.0% |
| ! | TTTAAATTATTACTAGGTGG+TGG | - | chr8.1:60619955-60619974 | None:intergenic | 25.0% |
| !! | ATCTAAACGACAAAATTTTC+AGG | + | chr8.1:60617696-60617715 | MS.gene77802:intron | 25.0% |
| !! | GTGCAAAACTAATTTTATCT+TGG | + | chr8.1:60619686-60619705 | MS.gene77802:intron | 25.0% |
| !!! | CTATTTTGAATTAGTTGTGA+AGG | + | chr8.1:60618342-60618361 | MS.gene77802:CDS | 25.0% |
| !!! | TGAAAATTTTGTCGTTTAGA+TGG | - | chr8.1:60617697-60617716 | None:intergenic | 25.0% |
| AACATATAAACCATGATACG+TGG | - | chr8.1:60617392-60617411 | None:intergenic | 30.0% | |
| AGTAAATATAAGCAACCGTT+AGG | - | chr8.1:60617175-60617194 | None:intergenic | 30.0% | |
| ATACAACTAGAGCAATACAT+GGG | - | chr8.1:60617878-60617897 | None:intergenic | 30.0% | |
| ATATCTGAATCCAATGTGAT+TGG | - | chr8.1:60618319-60618338 | None:intergenic | 30.0% | |
| ATCACATTGGATTCAGATAT+TGG | + | chr8.1:60618319-60618338 | MS.gene77802:CDS | 30.0% | |
| ATCATATACTCCAATCACAT+TGG | + | chr8.1:60618306-60618325 | MS.gene77802:CDS | 30.0% | |
| ATTTAACTCTCTTCTACATG+AGG | - | chr8.1:60619347-60619366 | None:intergenic | 30.0% | |
| ATTTGAATCTTGCAGTATTG+GGG | - | chr8.1:60617779-60617798 | None:intergenic | 30.0% | |
| CATAGAATTGACATTGTCTA+CGG | - | chr8.1:60617468-60617487 | None:intergenic | 30.0% | |
| CTGCAACAAAAGATAATAAC+AGG | - | chr8.1:60619091-60619110 | None:intergenic | 30.0% | |
| CTTCCTTCATTTGTCTAAAA+TGG | - | chr8.1:60618525-60618544 | None:intergenic | 30.0% | |
| GTCATTCAAATAGACCTTAT+GGG | - | chr8.1:60618058-60618077 | None:intergenic | 30.0% | |
| TATAGAACTGCTATTACCAT+AGG | + | chr8.1:60619260-60619279 | MS.gene77802:intron | 30.0% | |
| TATTAAGAACGTGAAAGACA+TGG | - | chr8.1:60619517-60619536 | None:intergenic | 30.0% | |
| TCATTTGTACCTGAAACATT+GGG | - | chr8.1:60618815-60618834 | None:intergenic | 30.0% | |
| TCTTACCAACTATATTCCTA+TGG | - | chr8.1:60619279-60619298 | None:intergenic | 30.0% | |
| TGTCATTCAAATAGACCTTA+TGG | - | chr8.1:60618059-60618078 | None:intergenic | 30.0% | |
| TGTCTTTCACGTTCTTAATA+AGG | + | chr8.1:60619517-60619536 | MS.gene77802:CDS | 30.0% | |
| TGTTAATTGGCAATTAAACC+TGG | - | chr8.1:60619878-60619897 | None:intergenic | 30.0% | |
| TTATGTAGGTTACCTTTAGT+AGG | - | chr8.1:60619194-60619213 | None:intergenic | 30.0% | |
| TTCATTTGTACCTGAAACAT+TGG | - | chr8.1:60618816-60618835 | None:intergenic | 30.0% | |
| TTGGAAAAAACATACTTGTC+AGG | + | chr8.1:60617838-60617857 | MS.gene77802:CDS | 30.0% | |
| TTTCAACCAATAATTGTGGT+GGG | - | chr8.1:60618020-60618039 | None:intergenic | 30.0% | |
| TTTGTATAAATGTTGAGCAG+AGG | + | chr8.1:60618253-60618272 | MS.gene77802:intron | 30.0% | |
| ! | AAAGCACTTAAAAGATGAGA+TGG | + | chr8.1:60617310-60617329 | MS.gene77802:intron | 30.0% |
| ! | ATTACATTCGACTTAACTTG+TGG | + | chr8.1:60617530-60617549 | MS.gene77802:intron | 30.0% |
| ! | ATTGCACCATTTAGAATTTC+AGG | - | chr8.1:60617134-60617153 | None:intergenic | 30.0% |
| ! | ATTTTCATGGTCAACCTTTA+AGG | - | chr8.1:60617619-60617638 | None:intergenic | 30.0% |
| ! | ATTTTGCAGATACTTAGATG+TGG | + | chr8.1:60619990-60620009 | MS.gene77802:intron | 30.0% |
| ! | CAGTTTTACCTTGATTCAAA+CGG | - | chr8.1:60617420-60617439 | None:intergenic | 30.0% |
| ! | CATTTTAGACAAATGAAGGA+AGG | + | chr8.1:60618523-60618542 | MS.gene77802:CDS | 30.0% |
| ! | CTTCATTTGTCTAAAATGGT+GGG | - | chr8.1:60618521-60618540 | None:intergenic | 30.0% |
| ! | CTTTTTACATTCGTATTTGG+AGG | - | chr8.1:60619611-60619630 | None:intergenic | 30.0% |
| ! | GTGAAGGTACAAAAAATTTG+TGG | + | chr8.1:60618358-60618377 | MS.gene77802:intron | 30.0% |
| ! | GTTTAGAGCTTCAATTTCTT+GGG | - | chr8.1:60618630-60618649 | None:intergenic | 30.0% |
| ! | TACAAATGAATCTGCCATTT+AGG | + | chr8.1:60618826-60618845 | MS.gene77802:intron | 30.0% |
| ! | TGTTTAGAGCTTCAATTTCT+TGG | - | chr8.1:60618631-60618650 | None:intergenic | 30.0% |
| ! | TTTTCAACCAATAATTGTGG+TGG | - | chr8.1:60618021-60618040 | None:intergenic | 30.0% |
| !! | TAAGTATAACAATGGATTGC+TGG | + | chr8.1:60618712-60618731 | MS.gene77802:intron | 30.0% |
| !! | TTACATTCGACTTAACTTGT+GGG | + | chr8.1:60617531-60617550 | MS.gene77802:intron | 30.0% |
| !!! | ACAAGTATGTTTTTTCCAAC+AGG | - | chr8.1:60617837-60617856 | None:intergenic | 30.0% |
| AAAAATCAAGCGGAACTAGA+TGG | - | chr8.1:60617505-60617524 | None:intergenic | 35.0% | |
| AAACCCAAAGGACAAAACAA+AGG | + | chr8.1:60619131-60619150 | MS.gene77802:CDS | 35.0% | |
| AATTGCACTCAAATCCCATA+AGG | + | chr8.1:60618041-60618060 | MS.gene77802:intron | 35.0% | |
| ACACCACCATTCCATTTATT+AGG | - | chr8.1:60619798-60619817 | None:intergenic | 35.0% | |
| AGAATCGTTCAAGATAACCT+AGG | + | chr8.1:60618934-60618953 | MS.gene77802:intron | 35.0% | |
| ATATCGAATTAGGAGTAGGA+AGG | - | chr8.1:60617806-60617825 | None:intergenic | 35.0% | |
| CAATTAAACCTGGATATCAG+GGG | - | chr8.1:60619868-60619887 | None:intergenic | 35.0% | |
| CATTTGTACCTGAAACATTG+GGG | - | chr8.1:60618814-60618833 | None:intergenic | 35.0% | |
| CCTACTCCTAATTCGATATT+GGG | + | chr8.1:60617807-60617826 | MS.gene77802:CDS | 35.0% | |
| GATAACCTAGGTTTGATTCT+TGG | + | chr8.1:60618946-60618965 | MS.gene77802:intron | 35.0% | |
| GATACAACTAGAGCAATACA+TGG | - | chr8.1:60617879-60617898 | None:intergenic | 35.0% | |
| GCAATTAAACCTGGATATCA+GGG | - | chr8.1:60619869-60619888 | None:intergenic | 35.0% | |
| GTAAGGACTTGAAAAATGCA+GGG | - | chr8.1:60617091-60617110 | None:intergenic | 35.0% | |
| TACAACTAGAGCAATACATG+GGG | - | chr8.1:60617877-60617896 | None:intergenic | 35.0% | |
| TATCGAATTAGGAGTAGGAA+GGG | - | chr8.1:60617805-60617824 | None:intergenic | 35.0% | |
| TCCTACTCCTAATTCGATAT+TGG | + | chr8.1:60617806-60617825 | MS.gene77802:CDS | 35.0% | |
| TTACAAACCTGGTCAAGTTA+GGG | + | chr8.1:60618755-60618774 | MS.gene77802:CDS | 35.0% | |
| TTCATCCAAGAATCAAACCT+AGG | - | chr8.1:60618954-60618973 | None:intergenic | 35.0% | |
| TTGGAGCCTGAAATTCTAAA+TGG | + | chr8.1:60617125-60617144 | MS.gene77802:CDS | 35.0% | |
| TTTGACAGCCTCCTAATAAA+TGG | + | chr8.1:60619784-60619803 | MS.gene77802:intron | 35.0% | |
| ! | AAGGTACTTTCTACCATCTT+AGG | + | chr8.1:60618571-60618590 | MS.gene77802:intron | 35.0% |
| ! | AATAAATGGAATGGTGGTGT+TGG | + | chr8.1:60619798-60619817 | MS.gene77802:CDS | 35.0% |
| ! | ACATCTCTCTACTTCTAGAA+AGG | + | chr8.1:60618078-60618097 | MS.gene77802:intron | 35.0% |
| ! | ATAAATGGAATGGTGGTGTT+GGG | + | chr8.1:60619799-60619818 | MS.gene77802:CDS | 35.0% |
| ! | ATCTTGGACACACATTTTCT+GGG | + | chr8.1:60619702-60619721 | MS.gene77802:intron | 35.0% |
| ! | CCACCATTTTAGACAAATGA+AGG | + | chr8.1:60618519-60618538 | MS.gene77802:CDS | 35.0% |
| ! | CCTTCATTTGTCTAAAATGG+TGG | - | chr8.1:60618522-60618541 | None:intergenic | 35.0% |
| ! | GTTTTACACCGTTTGAATCA+AGG | + | chr8.1:60617409-60617428 | MS.gene77802:intron | 35.0% |
| ! | TATCTTGGACACACATTTTC+TGG | + | chr8.1:60619701-60619720 | MS.gene77802:intron | 35.0% |
| ! | TCTACTTCTAGAAAGGATCT+TGG | + | chr8.1:60618085-60618104 | MS.gene77802:intron | 35.0% |
| !! | AAGATGGTAGAAAGTACCTT+AGG | - | chr8.1:60618571-60618590 | None:intergenic | 35.0% |
| !! | AGATGGTAGAAAGTACCTTA+GGG | - | chr8.1:60618570-60618589 | None:intergenic | 35.0% |
| !! | AGCAAGAAAGTACTACTCTA+AGG | - | chr8.1:60619231-60619250 | None:intergenic | 35.0% |
| !! | AGTTGCTATGGCTTTATTCA+TGG | - | chr8.1:60620024-60620043 | None:intergenic | 35.0% |
| !! | CTATATATGTTTGGTGATGC+AGG | + | chr8.1:60619451-60619470 | MS.gene77802:intron | 35.0% |
| !! | GTTGCTATGGCTTTATTCAT+GGG | - | chr8.1:60620023-60620042 | None:intergenic | 35.0% |
| !!! | ACACCTTTGTTTTGTCCTTT+GGG | - | chr8.1:60619137-60619156 | None:intergenic | 35.0% |
| !!! | GACAAAATTTTCAGGTAGCT+TGG | + | chr8.1:60617704-60617723 | MS.gene77802:intron | 35.0% |
| !!! | TACACCTTTGTTTTGTCCTT+TGG | - | chr8.1:60619138-60619157 | None:intergenic | 35.0% |
| AATGAAGGAAGGTGACAACT+TGG | + | chr8.1:60618534-60618553 | MS.gene77802:CDS | 40.0% | |
| AGCCATACTAGAAAACCCAA+AGG | + | chr8.1:60619119-60619138 | MS.gene77802:CDS | 40.0% | |
| AGTGGACGATATCCTACTAA+AGG | + | chr8.1:60619179-60619198 | MS.gene77802:CDS | 40.0% | |
| ATCATCAAGTCCACGTATCA+TGG | + | chr8.1:60617379-60617398 | MS.gene77802:intron | 40.0% | |
| CAGCCTCCTAATAAATGGAA+TGG | + | chr8.1:60619789-60619808 | MS.gene77802:intron | 40.0% | |
| CCACCATTCCATTTATTAGG+AGG | - | chr8.1:60619795-60619814 | None:intergenic | 40.0% | |
| CCCAATATCGAATTAGGAGT+AGG | - | chr8.1:60617810-60617829 | None:intergenic | 40.0% | |
| CCTCCTAATAAATGGAATGG+TGG | + | chr8.1:60619792-60619811 | MS.gene77802:CDS | 40.0% | |
| CTGTCACATTGGCGTAAATA+AGG | - | chr8.1:60619161-60619180 | None:intergenic | 40.0% | |
| GGAAGTCCCAATATCGAATT+AGG | - | chr8.1:60617816-60617835 | None:intergenic | 40.0% | |
| GGCAATTAAACCTGGATATC+AGG | - | chr8.1:60619870-60619889 | None:intergenic | 40.0% | |
| GGTAAGGACTTGAAAAATGC+AGG | - | chr8.1:60617092-60617111 | None:intergenic | 40.0% | |
| GTAGTACTTTCTTGCTTGTG+AGG | + | chr8.1:60619235-60619254 | MS.gene77802:intron | 40.0% | |
| GTTACAAACCTGGTCAAGTT+AGG | + | chr8.1:60618754-60618773 | MS.gene77802:CDS | 40.0% | |
| TACTATCGCAAAAACCCCAA+AGG | + | chr8.1:60617191-60617210 | MS.gene77802:CDS | 40.0% | |
| TATTTACGCCAATGTGACAG+TGG | + | chr8.1:60619161-60619180 | MS.gene77802:CDS | 40.0% | |
| TGAAAGACATGGAATCTGTG+AGG | - | chr8.1:60619506-60619525 | None:intergenic | 40.0% | |
| ! | ACTTCTAGAAAGGATCTTGG+AGG | + | chr8.1:60618088-60618107 | MS.gene77802:intron | 40.0% |
| ! | CTTACCTTTTGCTCAGAACT+TGG | + | chr8.1:60617106-60617125 | MS.gene77802:CDS | 40.0% |
| ! | GGTGGGACATTTTTCCATTT+GGG | - | chr8.1:60618504-60618523 | None:intergenic | 40.0% |
| ! | TGCCATTTAGGCACTTGAAA+AGG | + | chr8.1:60618838-60618857 | MS.gene77802:intron | 40.0% |
| ! | TGGTGGGACATTTTTCCATT+TGG | - | chr8.1:60618505-60618524 | None:intergenic | 40.0% |
| ! | TGGTGTTGGGTACATATCAA+AGG | + | chr8.1:60619812-60619831 | MS.gene77802:CDS | 40.0% |
| !! | AACCAATAATTGTGGTGGGT+GGG | - | chr8.1:60618016-60618035 | None:intergenic | 40.0% |
| !! | CAAGTTCTGAGCAAAAGGTA+AGG | - | chr8.1:60617108-60617127 | None:intergenic | 40.0% |
| !! | GTCCTTTGGGTTTTCTAGTA+TGG | - | chr8.1:60619124-60619143 | None:intergenic | 40.0% |
| !! | TAGGTGGTGGTGATTTTTCT+TGG | - | chr8.1:60619942-60619961 | None:intergenic | 40.0% |
| !!! | CACCTTTTCAAGTGCCTAAA+TGG | - | chr8.1:60618843-60618862 | None:intergenic | 40.0% |
| AGCAGAGGAAGAGATAGTCA+AGG | + | chr8.1:60618268-60618287 | MS.gene77802:intron | 45.0% | |
| AGGCATTACCCCAATGTTTC+AGG | + | chr8.1:60618803-60618822 | MS.gene77802:CDS | 45.0% | |
| ATAAGCAACCGTTAGGCCAA+CGG | - | chr8.1:60617168-60617187 | None:intergenic | 45.0% | |
| GATATCGTCCACTGTCACAT+TGG | - | chr8.1:60619172-60619191 | None:intergenic | 45.0% | |
| GGACGTTTCAGTTACAAACC+TGG | + | chr8.1:60618744-60618763 | MS.gene77802:CDS | 45.0% | |
| TCGATATTGGGACTTCCTGT+TGG | + | chr8.1:60617819-60617838 | MS.gene77802:CDS | 45.0% | |
| TGCAAGCAGATGTACCCAAA+TGG | + | chr8.1:60618487-60618506 | MS.gene77802:intron | 45.0% | |
| TGCTGCAAGATGAGTTGCTA+TGG | - | chr8.1:60620036-60620055 | None:intergenic | 45.0% | |
| ! | AGGGCATTTGGAATGATTGC+TGG | + | chr8.1:60618774-60618793 | MS.gene77802:CDS | 45.0% |
| ! | ATGGATTGCTGGAGCTTGTA+GGG | + | chr8.1:60618723-60618742 | MS.gene77802:intron | 45.0% |
| ! | CAACCAATAATTGTGGTGGG+TGG | - | chr8.1:60618017-60618036 | None:intergenic | 45.0% |
| ! | GCATTTGGAATGATTGCTGG+AGG | + | chr8.1:60618777-60618796 | MS.gene77802:CDS | 45.0% |
| !! | AATGGATTGCTGGAGCTTGT+AGG | + | chr8.1:60618722-60618741 | MS.gene77802:intron | 45.0% |
| !! | ATGGCTTTATTCATGGGTGG+TGG | - | chr8.1:60620017-60620036 | None:intergenic | 45.0% |
| !! | GCTATGGCTTTATTCATGGG+TGG | - | chr8.1:60620020-60620039 | None:intergenic | 45.0% |
| !! | AAATAATTATAATATGAATT+CGG | - | chr8.1:60619010-60619029 | None:intergenic | 5.0% |
| !! | AATAAATATTTGAAAAAAAA+AGG | + | chr8.1:60618206-60618225 | MS.gene77802:intron | 5.0% |
| !! | TAATAATTTAAAAACAAAAA+TGG | + | chr8.1:60619963-60619982 | MS.gene77802:intron | 5.0% |
| !!! | TTTTTTTCAAATATTTATTA+AGG | - | chr8.1:60618205-60618224 | None:intergenic | 5.0% |
| AAGTACCTTAGGGCCCTTCA+CGG | - | chr8.1:60618560-60618579 | None:intergenic | 50.0% | |
| CACCCACCCACCACAATTAT+TGG | + | chr8.1:60618011-60618030 | MS.gene77802:intron | 50.0% | |
| CCAAATGCCCTAACTTGACC+AGG | - | chr8.1:60618765-60618784 | None:intergenic | 50.0% | |
| GCAACTCATCTTGCAGCACT+TGG | + | chr8.1:60620038-60620057 | MS.gene77802:CDS | 50.0% | |
| GCAATTGCTCTTGTAGCCGT+TGG | + | chr8.1:60617149-60617168 | MS.gene77802:CDS | 50.0% | |
| GGAATGATTGCTGGAGGTTC+AGG | + | chr8.1:60618783-60618802 | MS.gene77802:CDS | 50.0% | |
| TAAACCTGGATATCAGGGGC+AGG | - | chr8.1:60619864-60619883 | None:intergenic | 50.0% | |
| ! | CCTGGTCAAGTTAGGGCATT+TGG | + | chr8.1:60618762-60618781 | MS.gene77802:CDS | 50.0% |
| ! | TCTTGTAGCCGTTGGCCTAA+CGG | + | chr8.1:60617157-60617176 | MS.gene77802:CDS | 50.0% |
| ! | TGCAGTATTGGGGCTGATCA+TGG | - | chr8.1:60617769-60617788 | None:intergenic | 50.0% |
| !! | GGCTCCAAGTTCTGAGCAAA+AGG | - | chr8.1:60617113-60617132 | None:intergenic | 50.0% |
| AGGTGACAACTTGGCCGTGA+AGG | + | chr8.1:60618543-60618562 | MS.gene77802:CDS | 55.0% | |
| GGTGACAACTTGGCCGTGAA+GGG | + | chr8.1:60618544-60618563 | MS.gene77802:CDS | 55.0% | |
| AGCACCTGCCCCTGATATCC+AGG | + | chr8.1:60619857-60619876 | MS.gene77802:CDS | 60.0% | |
| TGGATATCAGGGGCAGGTGC+TGG | - | chr8.1:60619858-60619877 | None:intergenic | 60.0% | |
| CTTGGCCGTGAAGGGCCCTA+AGG | + | chr8.1:60618552-60618571 | MS.gene77802:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 60617074 | 60620091 | 60617074 | ID=MS.gene77802 |
| chr8.1 | mRNA | 60617074 | 60620091 | 60617074 | ID=MS.gene77802.t1;Parent=MS.gene77802 |
| chr8.1 | exon | 60617074 | 60617212 | 60617074 | ID=MS.gene77802.t1.exon1;Parent=MS.gene77802.t1 |
| chr8.1 | CDS | 60617074 | 60617212 | 60617074 | ID=cds.MS.gene77802.t1;Parent=MS.gene77802.t1 |
| chr8.1 | exon | 60617718 | 60617859 | 60617718 | ID=MS.gene77802.t1.exon2;Parent=MS.gene77802.t1 |
| chr8.1 | CDS | 60617718 | 60617859 | 60617718 | ID=cds.MS.gene77802.t1;Parent=MS.gene77802.t1 |
| chr8.1 | exon | 60618273 | 60618363 | 60618273 | ID=MS.gene77802.t1.exon3;Parent=MS.gene77802.t1 |
| chr8.1 | CDS | 60618273 | 60618363 | 60618273 | ID=cds.MS.gene77802.t1;Parent=MS.gene77802.t1 |
| chr8.1 | exon | 60618496 | 60618573 | 60618496 | ID=MS.gene77802.t1.exon4;Parent=MS.gene77802.t1 |
| chr8.1 | CDS | 60618496 | 60618573 | 60618496 | ID=cds.MS.gene77802.t1;Parent=MS.gene77802.t1 |
| chr8.1 | exon | 60618744 | 60618824 | 60618744 | ID=MS.gene77802.t1.exon5;Parent=MS.gene77802.t1 |
| chr8.1 | CDS | 60618744 | 60618824 | 60618744 | ID=cds.MS.gene77802.t1;Parent=MS.gene77802.t1 |
| chr8.1 | exon | 60619111 | 60619200 | 60619111 | ID=MS.gene77802.t1.exon6;Parent=MS.gene77802.t1 |
| chr8.1 | CDS | 60619111 | 60619200 | 60619111 | ID=cds.MS.gene77802.t1;Parent=MS.gene77802.t1 |
| chr8.1 | exon | 60619473 | 60619538 | 60619473 | ID=MS.gene77802.t1.exon7;Parent=MS.gene77802.t1 |
| chr8.1 | CDS | 60619473 | 60619538 | 60619473 | ID=cds.MS.gene77802.t1;Parent=MS.gene77802.t1 |
| chr8.1 | exon | 60619792 | 60619878 | 60619792 | ID=MS.gene77802.t1.exon8;Parent=MS.gene77802.t1 |
| chr8.1 | CDS | 60619792 | 60619878 | 60619792 | ID=cds.MS.gene77802.t1;Parent=MS.gene77802.t1 |
| chr8.1 | exon | 60619999 | 60620091 | 60619999 | ID=MS.gene77802.t1.exon9;Parent=MS.gene77802.t1 |
| chr8.1 | CDS | 60619999 | 60620091 | 60619999 | ID=cds.MS.gene77802.t1;Parent=MS.gene77802.t1 |
| Gene Sequence |
| Protein sequence |
