Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78116.t1 | KYP44122.1 | 42.5 | 379 | 114 | 2 | 47 | 321 | 1 | 379 | 1.90E-73 | 286.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78116.t1 | A0A151RNK0 | 42.5 | 379 | 114 | 2 | 47 | 321 | 1 | 379 | 1.4e-73 | 286.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056173 | MS.gene78116 | 0.848492 | 5.92E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78116.t1 | MTR_7g029555 | 53.333 | 120 | 56 | 0 | 200 | 319 | 50 | 169 | 2.25e-27 | 107 |
| MS.gene78116.t1 | MTR_6g045307 | 34.862 | 109 | 66 | 3 | 213 | 320 | 514 | 618 | 2.84e-15 | 77.0 |
| MS.gene78116.t1 | MTR_4g044373 | 50.000 | 64 | 32 | 0 | 258 | 321 | 47 | 110 | 3.32e-15 | 72.4 |
| MS.gene78116.t1 | MTR_0011s0100 | 35.484 | 93 | 58 | 2 | 229 | 320 | 2 | 93 | 1.33e-14 | 72.4 |
| MS.gene78116.t1 | MTR_1478s0010 | 34.454 | 119 | 41 | 1 | 200 | 318 | 39 | 120 | 1.14e-12 | 66.6 |
| MS.gene78116.t1 | MTR_0037s0030 | 41.333 | 75 | 42 | 2 | 247 | 320 | 1 | 74 | 1.13e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78116.t1 | AT3G29750 | 30.534 | 131 | 89 | 1 | 47 | 175 | 124 | 254 | 6.15e-12 | 66.6 |
Find 71 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTCTGCTTTCATATTT+TGG | 0.105491 | 4.4:+47945551 | None:intergenic |
| AGCAATATTGAGACATTAAT+TGG | 0.144010 | 4.4:+47945676 | None:intergenic |
| ATTCGATATGTTCCTAATTC+TGG | 0.156046 | 4.4:-47942965 | MS.gene78116:CDS |
| ATTCGGTTCAAAGGATTTAT+TGG | 0.240797 | 4.4:-47945700 | MS.gene78116:CDS |
| GGATGTATACGTGCAGTTTC+CGG | 0.274133 | 4.4:+47942665 | None:intergenic |
| AATGCTTTGAAGGGCGTTAC+TGG | 0.295348 | 4.4:-47945733 | MS.gene78116:CDS |
| TCAAGAGTATCTCCAGAATT+AGG | 0.304921 | 4.4:+47942953 | None:intergenic |
| ACCACGAATTGTCCATTGTT+TGG | 0.314569 | 4.4:-47945623 | MS.gene78116:CDS |
| GGATTGGACAGGTGGCTTAC+AGG | 0.314852 | 4.4:-47942697 | MS.gene78116:CDS |
| CCACGAATTGTCCATTGTTT+GGG | 0.325860 | 4.4:-47945622 | MS.gene78116:CDS |
| GGCTTACAGGTTACAATTGC+CGG | 0.335672 | 4.4:-47942684 | MS.gene78116:CDS |
| TGGCAAGTTTATTACTTTGC+AGG | 0.338362 | 4.4:-47945365 | MS.gene78116:CDS |
| TTGAAGGGCGTTACTGGATA+TGG | 0.340511 | 4.4:-47945727 | MS.gene78116:CDS |
| GCTTACTTGTTACCAGTTGC+TGG | 0.344593 | 4.4:-47945478 | MS.gene78116:CDS |
| TATACAGCGCAATAATGTTT+TGG | 0.352810 | 4.4:-47945584 | MS.gene78116:CDS |
| AGTTGAGAAATGTGGAAAAC+AGG | 0.354804 | 4.4:+47942644 | None:intergenic |
| TTTAAAATCATTGAAAGGAT+TGG | 0.357507 | 4.4:-47942713 | MS.gene78116:CDS |
| AAAACATTATTGCGCTGTAT+AGG | 0.364819 | 4.4:+47945586 | None:intergenic |
| TCACCATGTTGTTGTGAATC+AGG | 0.367990 | 4.4:+47945790 | None:intergenic |
| TGGTGCAGTTGAGCTACTTC+AGG | 0.392533 | 4.4:+47945325 | None:intergenic |
| TAGTTGAGAAGATGCATAAT+CGG | 0.392865 | 4.4:+47945402 | None:intergenic |
| TTTATCACTGAATGCTTTGA+AGG | 0.407013 | 4.4:-47945743 | MS.gene78116:CDS |
| AAGCTGGGGATGCGTTATTT+CGG | 0.415255 | 4.4:-47942740 | MS.gene78116:CDS |
| ATCAAGTCAGCTCCAGCAAC+TGG | 0.437954 | 4.4:+47945466 | None:intergenic |
| ACAGATGTGTCACTTGAGAT+AGG | 0.449229 | 4.4:-47942827 | MS.gene78116:CDS |
| TGAAAGCAGAAGGGGTGGTA+AGG | 0.460080 | 4.4:-47945543 | MS.gene78116:CDS |
| GTTATAGGCACACCTTTGAA+TGG | 0.472620 | 4.4:+47942617 | None:intergenic |
| CAGATCTTAATAGTTTGTAA+TGG | 0.475558 | 4.4:-47942114 | None:intergenic |
| GATGTTTGCACTACAACATA+TGG | 0.484520 | 4.4:-47945266 | MS.gene78116:CDS |
| CTTGAGAAAGAATCAAAAGC+TGG | 0.485408 | 4.4:-47942756 | MS.gene78116:CDS |
| CCCAAACAATGGACAATTCG+TGG | 0.488894 | 4.4:+47945622 | None:intergenic |
| GGCAAGTTTATTACTTTGCA+GGG | 0.494204 | 4.4:-47945364 | MS.gene78116:CDS |
| TATGGTGTCATTCGGTTCAA+AGG | 0.499350 | 4.4:-47945709 | MS.gene78116:CDS |
| GCAATATTGAGACATTAATT+GGG | 0.504250 | 4.4:+47945677 | None:intergenic |
| GTCCATTTAAAATCATTGAA+AGG | 0.504599 | 4.4:-47942718 | MS.gene78116:CDS |
| TTACTGGATATGGTGTCATT+CGG | 0.507046 | 4.4:-47945717 | MS.gene78116:CDS |
| CCATTGTTTGGGTTTACCAG+TGG | 0.511350 | 4.4:-47945611 | MS.gene78116:CDS |
| GATGATGTTGGAATTAGAAG+AGG | 0.519884 | 4.4:-47945842 | None:intergenic |
| TCTCAACTTAAACCATTCAA+AGG | 0.520962 | 4.4:-47942629 | MS.gene78116:intron |
| AATCATTGAAAGGATTGGAC+AGG | 0.521831 | 4.4:-47942708 | MS.gene78116:CDS |
| ATGGTTTAAGTTGAGAAATG+TGG | 0.522680 | 4.4:+47942636 | None:intergenic |
| AAGCATTCAGTGATAAATGA+TGG | 0.527072 | 4.4:+47945749 | None:intergenic |
| TTGAGAAAGAATCAAAAGCT+GGG | 0.535669 | 4.4:-47942755 | MS.gene78116:CDS |
| TTGCGCTGTATAGGTTCCAC+TGG | 0.539480 | 4.4:+47945595 | None:intergenic |
| AATGTCTCAATATTGCTAGA+TGG | 0.546071 | 4.4:-47945670 | MS.gene78116:CDS |
| TAGCTCAACTGCACCACTTG+AGG | 0.546093 | 4.4:-47945318 | MS.gene78116:CDS |
| GCACCATGGCTAGCTTCACT+TGG | 0.549556 | 4.4:-47945436 | MS.gene78116:CDS |
| GATGTTGGAATTAGAAGAGG+AGG | 0.554264 | 4.4:-47945839 | MS.gene78116:CDS |
| ATAAATGATGGTCTGTAGCC+TGG | 0.554512 | 4.4:+47945761 | None:intergenic |
| GGCCAAAATATGAAAGCAGA+AGG | 0.555141 | 4.4:-47945553 | MS.gene78116:CDS |
| AAGTTATCTGTTAAAGTACA+AGG | 0.556538 | 4.4:-47945520 | MS.gene78116:CDS |
| AACAATGGACAATTCGTGGT+TGG | 0.557450 | 4.4:+47945626 | None:intergenic |
| TTATCACTGAATGCTTTGAA+GGG | 0.559038 | 4.4:-47945742 | MS.gene78116:CDS |
| CATTGAAAGGATTGGACAGG+TGG | 0.561403 | 4.4:-47942705 | MS.gene78116:CDS |
| ACAACATGGTGACGAAGACC+AGG | 0.586335 | 4.4:-47945779 | MS.gene78116:CDS |
| GCCAAAATATGAAAGCAGAA+GGG | 0.591437 | 4.4:-47945552 | MS.gene78116:CDS |
| GCAACTGGTAACAAGTAAGC+TGG | 0.595245 | 4.4:+47945481 | None:intergenic |
| TGAGATAGGCGACCAAGTGT+TGG | 0.600338 | 4.4:-47942813 | MS.gene78116:CDS |
| GTTGCAATTTAACCAACACT+TGG | 0.600821 | 4.4:+47942801 | None:intergenic |
| GATGCATAATCGGCTACATG+AGG | 0.608400 | 4.4:+47945412 | None:intergenic |
| CCAAAATATGAAAGCAGAAG+GGG | 0.609882 | 4.4:-47945551 | MS.gene78116:CDS |
| TGTGTTGCAATCTCCTCAAG+TGG | 0.610818 | 4.4:+47945305 | None:intergenic |
| GTCTCAATATTGCTAGATGG+AGG | 0.631441 | 4.4:-47945667 | MS.gene78116:CDS |
| ATTGAAAGCTAATCTGCAGA+AGG | 0.631622 | 4.4:-47942888 | MS.gene78116:CDS |
| CAACCTGATTCACAACAACA+TGG | 0.636136 | 4.4:-47945793 | MS.gene78116:CDS |
| AAATATGAAAGCAGAAGGGG+TGG | 0.642209 | 4.4:-47945548 | MS.gene78116:CDS |
| ATGCATAATCGGCTACATGA+GGG | 0.653870 | 4.4:+47945413 | None:intergenic |
| TGAGAAAGAATCAAAAGCTG+GGG | 0.657214 | 4.4:-47942754 | MS.gene78116:CDS |
| GGGCCAAGTGAAGCTAGCCA+TGG | 0.667960 | 4.4:+47945433 | None:intergenic |
| ACCATATAGACAAAATTCAG+TGG | 0.668238 | 4.4:-47942780 | MS.gene78116:CDS |
| CCACTGGTAAACCCAAACAA+TGG | 0.688004 | 4.4:+47945611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTATTCATCAATCTC+TGG | + | chr4.4:47943277-47943296 | None:intergenic | 20.0% |
| !!! | AAGTGTTTACAAGTAAATTT+TGG | - | chr4.4:47944721-47944740 | MS.gene78116:intron | 20.0% |
| !!! | ATCCTTTCAATGATTTTAAA+TGG | + | chr4.4:47945242-47945261 | None:intergenic | 20.0% |
| !!! | TTCTCAACTAAAATTTTATC+TGG | - | chr4.4:47942566-47942585 | MS.gene78116:intron | 20.0% |
| !!! | TTTAAAATCATTGAAAGGAT+TGG | - | chr4.4:47945242-47945261 | MS.gene78116:intron | 20.0% |
| !!! | TTTTAATATATAGTCCTACT+TGG | - | chr4.4:47943342-47943361 | MS.gene78116:intron | 20.0% |
| !!! | TTTTAGAAAAGAATGCTATA+GGG | + | chr4.4:47943823-47943842 | None:intergenic | 20.0% |
| !!! | TTTTTAGAAAAGAATGCTAT+AGG | + | chr4.4:47943824-47943843 | None:intergenic | 20.0% |
| ! | AAGTTATCTGTTAAAGTACA+AGG | - | chr4.4:47942435-47942454 | MS.gene78116:intron | 25.0% |
| ! | ACTAATATCGTCAAATTACA+TGG | - | chr4.4:47944666-47944685 | MS.gene78116:intron | 25.0% |
| ! | AGCAATATTGAGACATTAAT+TGG | + | chr4.4:47942282-47942301 | None:intergenic | 25.0% |
| ! | ATATTACAGAAGGTTTATCA+AGG | - | chr4.4:47943589-47943608 | MS.gene78116:intron | 25.0% |
| ! | CTGTTCTTATTATAAATCTG+TGG | + | chr4.4:47943940-47943959 | None:intergenic | 25.0% |
| ! | GAAAGAAGAAATTGAGAAAA+TGG | - | chr4.4:47942911-47942930 | MS.gene78116:CDS | 25.0% |
| ! | GCAATATTGAGACATTAATT+GGG | + | chr4.4:47942281-47942300 | None:intergenic | 25.0% |
| ! | TAATGTAATGAATAATGACG+TGG | - | chr4.4:47945589-47945608 | MS.gene78116:CDS | 25.0% |
| ! | TGAAAGAAGGTTTATTATAC+TGG | - | chr4.4:47944238-47944257 | MS.gene78116:intron | 25.0% |
| !! | AAGTTATCTAAATGCTCTTT+TGG | - | chr4.4:47943428-47943447 | MS.gene78116:intron | 25.0% |
| !! | AGACTTTAGAAATGTATTTG+AGG | - | chr4.4:47944832-47944851 | MS.gene78116:intron | 25.0% |
| !! | CAACTAAAATTTTATCTGGA+TGG | - | chr4.4:47942570-47942589 | MS.gene78116:intron | 25.0% |
| !! | GTCCATTTAAAATCATTGAA+AGG | - | chr4.4:47945237-47945256 | MS.gene78116:intron | 25.0% |
| !! | GTTACTATGGATTTTATTAC+TGG | - | chr4.4:47944522-47944541 | MS.gene78116:intron | 25.0% |
| !! | TATTAAGATCTGAAATGAAG+AGG | + | chr4.4:47945833-47945852 | None:intergenic | 25.0% |
| !! | TTCTTCAATAGATTAGTCAA+GGG | + | chr4.4:47943635-47943654 | None:intergenic | 25.0% |
| !! | TTTCTTCAATAGATTAGTCA+AGG | + | chr4.4:47943636-47943655 | None:intergenic | 25.0% |
| !! | TTTTCTCAATTTCTTCTTTC+TGG | + | chr4.4:47942911-47942930 | None:intergenic | 25.0% |
| !!! | AATAATGTTTTGGTAGGAAA+TGG | - | chr4.4:47942381-47942400 | MS.gene78116:intron | 25.0% |
| !!! | AGCATTCTTTTCTAAAAAGA+TGG | - | chr4.4:47943826-47943845 | MS.gene78116:intron | 25.0% |
| !!! | GAATAAGTGCTGAATTTTAT+TGG | - | chr4.4:47944370-47944389 | MS.gene78116:intron | 25.0% |
| !!! | TAGTATTTTGGTACGAAAAA+AGG | - | chr4.4:47942992-47943011 | MS.gene78116:intron | 25.0% |
| !!! | TTTTTTCGTACCAAAATACT+AGG | + | chr4.4:47942993-47943012 | None:intergenic | 25.0% |
| AAAACATTATTGCGCTGTAT+AGG | + | chr4.4:47942372-47942391 | None:intergenic | 30.0% | |
| AAAATACTAGGAGAGGAAAA+TGG | + | chr4.4:47942981-47943000 | None:intergenic | 30.0% | |
| AAATCAGGAAGATTAAGTAC+AGG | + | chr4.4:47943728-47943747 | None:intergenic | 30.0% | |
| AAGACACATCTTCTCAATAA+TGG | + | chr4.4:47943305-47943324 | None:intergenic | 30.0% | |
| AAGCATTCAGTGATAAATGA+TGG | + | chr4.4:47942209-47942228 | None:intergenic | 30.0% | |
| AAGTAAAAGCTGTTGTAGAA+TGG | - | chr4.4:47943516-47943535 | MS.gene78116:intron | 30.0% | |
| AATCAGGAAGATTAAGTACA+GGG | + | chr4.4:47943727-47943746 | None:intergenic | 30.0% | |
| AATGTCTCAATATTGCTAGA+TGG | - | chr4.4:47942285-47942304 | MS.gene78116:intron | 30.0% | |
| ACAGATTTACTAGAATAGTC+AGG | + | chr4.4:47944630-47944649 | None:intergenic | 30.0% | |
| ACCATATAGACAAAATTCAG+TGG | - | chr4.4:47945175-47945194 | MS.gene78116:intron | 30.0% | |
| ATACATTCAGGAGCTAATAT+TGG | + | chr4.4:47945404-47945423 | None:intergenic | 30.0% | |
| ATTATTGAGAAGATGTGTCT+TGG | - | chr4.4:47943304-47943323 | MS.gene78116:intron | 30.0% | |
| ATTCGATATGTTCCTAATTC+TGG | - | chr4.4:47944990-47945009 | MS.gene78116:intron | 30.0% | |
| ATTCGGTTCAAAGGATTTAT+TGG | - | chr4.4:47942255-47942274 | MS.gene78116:intron | 30.0% | |
| GACTAATCTATTGAAGAAAG+AGG | - | chr4.4:47943637-47943656 | MS.gene78116:intron | 30.0% | |
| TAGTTGAGAAGATGCATAAT+CGG | + | chr4.4:47942556-47942575 | None:intergenic | 30.0% | |
| TCTATAAGTAGACAACAAAG+TGG | + | chr4.4:47942775-47942794 | None:intergenic | 30.0% | |
| TCTCAACTTAAACCATTCAA+AGG | - | chr4.4:47945326-47945345 | MS.gene78116:CDS | 30.0% | |
| TGTAGTACCTTTGGATATTT+GGG | - | chr4.4:47942716-47942735 | MS.gene78116:CDS | 30.0% | |
| TTAGCTGAAGTAGAATACTT+GGG | - | chr4.4:47943452-47943471 | MS.gene78116:intron | 30.0% | |
| TTATTGGCCAAATATGAAGT+CGG | - | chr4.4:47944386-47944405 | MS.gene78116:intron | 30.0% | |
| TTGAGAAAGAATCAAAAGCT+GGG | - | chr4.4:47945200-47945219 | MS.gene78116:intron | 30.0% | |
| TTTATCACTGAATGCTTTGA+AGG | - | chr4.4:47942212-47942231 | MS.gene78116:intron | 30.0% | |
| TTTATCTCTATCTGACACAA+TGG | + | chr4.4:47944703-47944722 | None:intergenic | 30.0% | |
| TTTCATATTGAGTACAAGCA+GGG | - | chr4.4:47944046-47944065 | MS.gene78116:intron | 30.0% | |
| ! | AAATTTTGCCACTATTTGCT+AGG | - | chr4.4:47943914-47943933 | MS.gene78116:intron | 30.0% |
| ! | AGCTTTTGATAAATTGAAGC+AGG | - | chr4.4:47943688-47943707 | MS.gene78116:intron | 30.0% |
| ! | ATAGTGGCAAAATTTTGCTA+AGG | + | chr4.4:47943909-47943928 | None:intergenic | 30.0% |
| ! | ATTTTCCTCTCCTAGTATTT+TGG | - | chr4.4:47942980-47942999 | MS.gene78116:intron | 30.0% |
| ! | TATACAGCGCAATAATGTTT+TGG | - | chr4.4:47942371-47942390 | MS.gene78116:intron | 30.0% |
| ! | TTATCACTGAATGCTTTGAA+GGG | - | chr4.4:47942213-47942232 | MS.gene78116:intron | 30.0% |
| ! | TTCTACAACAGCTTTTACTT+TGG | + | chr4.4:47943516-47943535 | None:intergenic | 30.0% |
| ! | TTGGGTGAATTTTCTTCAAA+CGG | + | chr4.4:47945673-47945692 | None:intergenic | 30.0% |
| ! | TTTTCATATTGAGTACAAGC+AGG | - | chr4.4:47944045-47944064 | MS.gene78116:intron | 30.0% |
| !! | ATGGTTTAAGTTGAGAAATG+TGG | + | chr4.4:47945322-47945341 | None:intergenic | 30.0% |
| !! | ATTTTGGTACGAAAAAAGGA+TGG | - | chr4.4:47942996-47943015 | MS.gene78116:intron | 30.0% |
| !!! | CAAACAATGCATTTTGACTA+AGG | + | chr4.4:47943406-47943425 | None:intergenic | 30.0% |
| AAGAATGTGAAGCAGTTAAG+GGG | - | chr4.4:47943548-47943567 | MS.gene78116:intron | 35.0% | |
| AATCATTGAAAGGATTGGAC+AGG | - | chr4.4:47945247-47945266 | MS.gene78116:intron | 35.0% | |
| ACATATCGAATCAACTTTGG+AGG | + | chr4.4:47944981-47945000 | None:intergenic | 35.0% | |
| ACCACTTTGTGAGAAAGTAA+GGG | - | chr4.4:47945699-47945718 | MS.gene78116:CDS | 35.0% | |
| ACTCTCTAATATAAGCAGAC+TGG | + | chr4.4:47943868-47943887 | None:intergenic | 35.0% | |
| ACTGTAAAGCCACAAGATAA+TGG | + | chr4.4:47944552-47944571 | None:intergenic | 35.0% | |
| AGTAACTACACAGTGAAAGA+AGG | - | chr4.4:47944225-47944244 | MS.gene78116:intron | 35.0% | |
| AGTTGAGAAATGTGGAAAAC+AGG | + | chr4.4:47945314-47945333 | None:intergenic | 35.0% | |
| ATCAGGAAGATTAAGTACAG+GGG | + | chr4.4:47943726-47943745 | None:intergenic | 35.0% | |
| ATTGAAAGCTAATCTGCAGA+AGG | - | chr4.4:47945067-47945086 | MS.gene78116:intron | 35.0% | |
| CAACAATGCCTCAATAATAC+AGG | - | chr4.4:47944195-47944214 | MS.gene78116:intron | 35.0% | |
| CAAGAATGTGAAGCAGTTAA+GGG | - | chr4.4:47943547-47943566 | MS.gene78116:intron | 35.0% | |
| CCAAAATATGAAAGCAGAAG+GGG | - | chr4.4:47942404-47942423 | MS.gene78116:intron | 35.0% | |
| CGCTTGTTCAATATACATTC+AGG | + | chr4.4:47945416-47945435 | None:intergenic | 35.0% | |
| CTGTAGTACCTTTGGATATT+TGG | - | chr4.4:47942715-47942734 | MS.gene78116:CDS | 35.0% | |
| CTTAACTGCTTCACATTCTT+GGG | + | chr4.4:47943548-47943567 | None:intergenic | 35.0% | |
| CTTAGCTGAAGTAGAATACT+TGG | - | chr4.4:47943451-47943470 | MS.gene78116:intron | 35.0% | |
| CTTGAGAAAGAATCAAAAGC+TGG | - | chr4.4:47945199-47945218 | MS.gene78116:intron | 35.0% | |
| GAAAGAGAAGAATCAGATTG+TGG | - | chr4.4:47945731-47945750 | MS.gene78116:CDS | 35.0% | |
| GAAGAGTTTAAAAAGCCTGT+TGG | - | chr4.4:47943964-47943983 | MS.gene78116:intron | 35.0% | |
| GACATCTTTCAAATTCCCAA+AGG | - | chr4.4:47942795-47942814 | MS.gene78116:CDS | 35.0% | |
| GATGTTTGCACTACAACATA+TGG | - | chr4.4:47942689-47942708 | MS.gene78116:CDS | 35.0% | |
| GCCAAAATATGAAAGCAGAA+GGG | - | chr4.4:47942403-47942422 | MS.gene78116:intron | 35.0% | |
| GGAACATATCGAATCAACTT+TGG | + | chr4.4:47944984-47945003 | None:intergenic | 35.0% | |
| GGCAAGTTTATTACTTTGCA+GGG | - | chr4.4:47942591-47942610 | MS.gene78116:intron | 35.0% | |
| GTTGCAATTTAACCAACACT+TGG | + | chr4.4:47945157-47945176 | None:intergenic | 35.0% | |
| GTTTGAAGAAAATTCACCCA+AGG | - | chr4.4:47945672-47945691 | MS.gene78116:CDS | 35.0% | |
| TACGAAAAAAGGATGGTACA+TGG | - | chr4.4:47943003-47943022 | MS.gene78116:intron | 35.0% | |
| TGAGAAAGAATCAAAAGCTG+GGG | - | chr4.4:47945201-47945220 | MS.gene78116:intron | 35.0% | |
| TGATTGCATTCTCTGTTAGT+AGG | + | chr4.4:47942825-47942844 | None:intergenic | 35.0% | |
| TGGATTAATGAACTATCCAC+CGG | + | chr4.4:47944282-47944301 | None:intergenic | 35.0% | |
| TGGCAAGTTTATTACTTTGC+AGG | - | chr4.4:47942590-47942609 | MS.gene78116:intron | 35.0% | |
| TTATCCAAACCTCAATCTTG+AGG | - | chr4.4:47945541-47945560 | MS.gene78116:CDS | 35.0% | |
| ! | ACGAATGGTAGTGAAAAATC+AGG | + | chr4.4:47943743-47943762 | None:intergenic | 35.0% |
| ! | CTAGAATAGTCAGGCTTTAA+TGG | + | chr4.4:47944621-47944640 | None:intergenic | 35.0% |
| ! | GCCACTGAATTTTGTCTATA+TGG | + | chr4.4:47945179-47945198 | None:intergenic | 35.0% |
| ! | TTTTACTTTGGCCTGATCTA+CGG | + | chr4.4:47943504-47943523 | None:intergenic | 35.0% |
| !! | AGGACAAGATTGCTTTTGAA+GGG | - | chr4.4:47945561-47945580 | MS.gene78116:CDS | 35.0% |
| !! | ATTTCTTCTTTCTGGCTATG+AGG | + | chr4.4:47942903-47942922 | None:intergenic | 35.0% |
| !! | CAAATATCCAAAGGTACTAC+AGG | + | chr4.4:47942717-47942736 | None:intergenic | 35.0% |
| !! | CAGCTTTTGATTCTTTCTCA+AGG | + | chr4.4:47945201-47945220 | None:intergenic | 35.0% |
| !! | TCAAGAGTATCTCCAGAATT+AGG | + | chr4.4:47945005-47945024 | None:intergenic | 35.0% |
| !! | TTACTGGATATGGTGTCATT+CGG | - | chr4.4:47942238-47942257 | MS.gene78116:intron | 35.0% |
| !! | TTTTCTAAAAAGATGGCACC+TGG | - | chr4.4:47943833-47943852 | MS.gene78116:intron | 35.0% |
| !!! | GAAGAACAAACTAGTTTTGC+CGG | - | chr4.4:47944260-47944279 | MS.gene78116:intron | 35.0% |
| AAATATGAAAGCAGAAGGGG+TGG | - | chr4.4:47942407-47942426 | MS.gene78116:intron | 40.0% | |
| AACAATGGACAATTCGTGGT+TGG | + | chr4.4:47942332-47942351 | None:intergenic | 40.0% | |
| ACACCATTCAAAGCAGTGTA+TGG | - | chr4.4:47944948-47944967 | MS.gene78116:intron | 40.0% | |
| ACATCGTTTCACACTAGCAT+TGG | - | chr4.4:47944921-47944940 | MS.gene78116:intron | 40.0% | |
| ACCACGAATTGTCCATTGTT+TGG | - | chr4.4:47942332-47942351 | MS.gene78116:intron | 40.0% | |
| AGTACCTTTGGATATTTGGG+AGG | - | chr4.4:47942719-47942738 | MS.gene78116:CDS | 40.0% | |
| ATAAATGATGGTCTGTAGCC+TGG | + | chr4.4:47942197-47942216 | None:intergenic | 40.0% | |
| ATATTGAGTACAAGCAGGGA+AGG | - | chr4.4:47944050-47944069 | MS.gene78116:intron | 40.0% | |
| ATGCATAATCGGCTACATGA+GGG | + | chr4.4:47942545-47942564 | None:intergenic | 40.0% | |
| ATGTCCTCCCAAATATCCAA+AGG | + | chr4.4:47942726-47942745 | None:intergenic | 40.0% | |
| CAACCTGATTCACAACAACA+TGG | - | chr4.4:47942162-47942181 | MS.gene78116:intron | 40.0% | |
| CAATCTTGTCCTCAAGATTG+AGG | + | chr4.4:47945553-47945572 | None:intergenic | 40.0% | |
| CACATCTTCTCAATAATGGC+TGG | + | chr4.4:47943301-47943320 | None:intergenic | 40.0% | |
| CCAAGAATGTGAAGCAGTTA+AGG | - | chr4.4:47943546-47943565 | MS.gene78116:intron | 40.0% | |
| CCACGAATTGTCCATTGTTT+GGG | - | chr4.4:47942333-47942352 | MS.gene78116:intron | 40.0% | |
| CCACTTTGTGAGAAAGTAAG+GGG | - | chr4.4:47945700-47945719 | MS.gene78116:CDS | 40.0% | |
| CCTTAACTGCTTCACATTCT+TGG | + | chr4.4:47943549-47943568 | None:intergenic | 40.0% | |
| CTGTTAGTAGGAAGTCCTTT+GGG | + | chr4.4:47942813-47942832 | None:intergenic | 40.0% | |
| GAAAAAAGGATGGTACATGG+AGG | - | chr4.4:47943006-47943025 | MS.gene78116:intron | 40.0% | |
| GAACTTCTAGACGAGTTACA+TGG | - | chr4.4:47943098-47943117 | MS.gene78116:intron | 40.0% | |
| GAAGAAAATTCACCCAAGGT+GGG | - | chr4.4:47945676-47945695 | MS.gene78116:CDS | 40.0% | |
| GAATAATGACGTGGACATAG+TGG | - | chr4.4:47945598-47945617 | MS.gene78116:CDS | 40.0% | |
| GACCACTTTGTGAGAAAGTA+AGG | - | chr4.4:47945698-47945717 | MS.gene78116:CDS | 40.0% | |
| GATACTCTTGCAACACTTGT+TGG | + | chr4.4:47944302-47944321 | None:intergenic | 40.0% | |
| GCTTGGTTGCATAAGTTCAT+TGG | - | chr4.4:47944016-47944035 | MS.gene78116:intron | 40.0% | |
| GGCCAAAATATGAAAGCAGA+AGG | - | chr4.4:47942402-47942421 | MS.gene78116:intron | 40.0% | |
| GGCTTACAGGATATTACAGA+AGG | - | chr4.4:47943579-47943598 | MS.gene78116:intron | 40.0% | |
| GGTATGGGAAGATGTTACTA+TGG | - | chr4.4:47944509-47944528 | MS.gene78116:intron | 40.0% | |
| GTCTCAATATTGCTAGATGG+AGG | - | chr4.4:47942288-47942307 | MS.gene78116:intron | 40.0% | |
| GTTATAGGCACACCTTTGAA+TGG | + | chr4.4:47945341-47945360 | None:intergenic | 40.0% | |
| TACAGTCATTCTAGTGGTTG+TGG | - | chr4.4:47944566-47944585 | MS.gene78116:intron | 40.0% | |
| TAGCTTTCATATGCCAACTG+TGG | - | chr4.4:47943073-47943092 | MS.gene78116:intron | 40.0% | |
| TCACCATGTTGTTGTGAATC+AGG | + | chr4.4:47942168-47942187 | None:intergenic | 40.0% | |
| TCGTACCAAAATACTAGGAG+AGG | + | chr4.4:47942988-47943007 | None:intergenic | 40.0% | |
| TCTAGAAGTTCATCCACAGT+TGG | + | chr4.4:47943089-47943108 | None:intergenic | 40.0% | |
| TCTGTTAGTAGGAAGTCCTT+TGG | + | chr4.4:47942814-47942833 | None:intergenic | 40.0% | |
| TCTTGTTAACTGCTTCCGAT+TGG | + | chr4.4:47944815-47944834 | None:intergenic | 40.0% | |
| TGAACCAAGTGCTAGTGAAA+TGG | - | chr4.4:47945462-47945481 | MS.gene78116:CDS | 40.0% | |
| TGAAGAAAATTCACCCAAGG+TGG | - | chr4.4:47945675-47945694 | MS.gene78116:CDS | 40.0% | |
| TGCTGAGAAACCAAAGACTT+GGG | - | chr4.4:47944863-47944882 | MS.gene78116:intron | 40.0% | |
| TGGCTATGAGGATATCAGTA+AGG | + | chr4.4:47942891-47942910 | None:intergenic | 40.0% | |
| TGTCAGTGCCTGTATTATTG+AGG | + | chr4.4:47944206-47944225 | None:intergenic | 40.0% | |
| TGTGGTGTGCAATGTTTATG+TGG | - | chr4.4:47945749-47945768 | MS.gene78116:CDS | 40.0% | |
| TTGTCCTCAAGATTGAGGTT+TGG | + | chr4.4:47945548-47945567 | None:intergenic | 40.0% | |
| TTTGTAAGGACTGATCCAAC+AGG | + | chr4.4:47943982-47944001 | None:intergenic | 40.0% | |
| ! | AAGCAGTTAAGGGGTTTTCT+AGG | - | chr4.4:47943557-47943576 | MS.gene78116:intron | 40.0% |
| ! | AGCAGTTAAGGGGTTTTCTA+GGG | - | chr4.4:47943558-47943577 | MS.gene78116:intron | 40.0% |
| ! | ATCAATCTCTGGAAAGTTGC+TGG | + | chr4.4:47943266-47943285 | None:intergenic | 40.0% |
| ! | CCCCTTCTGCTTTCATATTT+TGG | + | chr4.4:47942407-47942426 | None:intergenic | 40.0% |
| ! | CTATCTGACACAATGGACTT+AGG | + | chr4.4:47944696-47944715 | None:intergenic | 40.0% |
| ! | GAGAAAGTAAGGGGTATATG+AGG | - | chr4.4:47945709-47945728 | MS.gene78116:CDS | 40.0% |
| ! | TGGCTTTACAGTCATTCTAG+TGG | - | chr4.4:47944560-47944579 | MS.gene78116:intron | 40.0% |
| !! | AAGATTGCTTTTGAAGGGGA+GGG | - | chr4.4:47945566-47945585 | MS.gene78116:CDS | 40.0% |
| !! | ACAGATGTGTCACTTGAGAT+AGG | - | chr4.4:47945128-47945147 | MS.gene78116:intron | 40.0% |
| !! | ATTAGTCAAGGGACTTGCTA+TGG | + | chr4.4:47943624-47943643 | None:intergenic | 40.0% |
| !! | GAGGACAAGATTGCTTTTGA+AGG | - | chr4.4:47945560-47945579 | MS.gene78116:CDS | 40.0% |
| !! | GGACAAGATTGCTTTTGAAG+GGG | - | chr4.4:47945562-47945581 | MS.gene78116:CDS | 40.0% |
| !! | TATGGTGTCATTCGGTTCAA+AGG | - | chr4.4:47942246-47942265 | MS.gene78116:intron | 40.0% |
| !! | TGAAGAAAGAGGCATTTGCA+TGG | - | chr4.4:47943648-47943667 | MS.gene78116:intron | 40.0% |
| !!! | ACTTGATTTTAGGAGCACCA+TGG | - | chr4.4:47942505-47942524 | MS.gene78116:intron | 40.0% |
| !!! | CAGCGCAATAATGTTTTGGT+AGG | - | chr4.4:47942375-47942394 | MS.gene78116:intron | 40.0% |
| AACAAGCGTACAGTGTTGCA+GGG | - | chr4.4:47945428-47945447 | MS.gene78116:CDS | 45.0% | |
| AACATCTTCCCATACCTGAG+TGG | + | chr4.4:47944505-47944524 | None:intergenic | 45.0% | |
| AAGCTGGGGATGCGTTATTT+CGG | - | chr4.4:47945215-47945234 | MS.gene78116:intron | 45.0% | |
| ACAACAAAGTGGCCATAGCT+GGG | + | chr4.4:47942764-47942783 | None:intergenic | 45.0% | |
| ACATCTTCCCATACCTGAGT+GGG | + | chr4.4:47944504-47944523 | None:intergenic | 45.0% | |
| ACATGAGCACGTTGAGAGAA+GGG | - | chr4.4:47945640-47945659 | MS.gene78116:CDS | 45.0% | |
| ACCAGATTCACAACCTGTGA+AGG | - | chr4.4:47942860-47942879 | MS.gene78116:CDS | 45.0% | |
| ACCTTCACAGGTTGTGAATC+TGG | + | chr4.4:47942864-47942883 | None:intergenic | 45.0% | |
| ACTGCTTTCAGAACCCATCA+AGG | - | chr4.4:47943197-47943216 | MS.gene78116:intron | 45.0% | |
| AGCTGCTGTAGTTAATGGCA+GGG | + | chr4.4:47945375-47945394 | None:intergenic | 45.0% | |
| AGGGGAACATAGGCTGTTAT+AGG | + | chr4.4:47945356-47945375 | None:intergenic | 45.0% | |
| AGTAGAATACTTGGGACACG+TGG | - | chr4.4:47943460-47943479 | MS.gene78116:intron | 45.0% | |
| AGTTAATGGCAGGGGAACAT+AGG | + | chr4.4:47945366-47945385 | None:intergenic | 45.0% | |
| ATCTGTGGCCTAGCAAATAG+TGG | + | chr4.4:47943925-47943944 | None:intergenic | 45.0% | |
| CATTGAAAGGATTGGACAGG+TGG | - | chr4.4:47945250-47945269 | MS.gene78116:intron | 45.0% | |
| CCACTCATAATGCCCTTGAT+GGG | + | chr4.4:47943213-47943232 | None:intergenic | 45.0% | |
| CCACTGGTAAACCCAAACAA+TGG | + | chr4.4:47942347-47942366 | None:intergenic | 45.0% | |
| CCAGAGTCATGGCATTATCA+TGG | - | chr4.4:47944097-47944116 | MS.gene78116:intron | 45.0% | |
| CCATTAACTACAGCAGCTGA+AGG | - | chr4.4:47945377-47945396 | MS.gene78116:CDS | 45.0% | |
| CCCAAACAATGGACAATTCG+TGG | + | chr4.4:47942336-47942355 | None:intergenic | 45.0% | |
| CCCCTTACTTTCTCACAAAG+TGG | + | chr4.4:47945703-47945722 | None:intergenic | 45.0% | |
| CCTTCAGCTGCTGTAGTTAA+TGG | + | chr4.4:47945380-47945399 | None:intergenic | 45.0% | |
| CTGCTGAGAAACCAAAGACT+TGG | - | chr4.4:47944862-47944881 | MS.gene78116:intron | 45.0% | |
| CTGCTTTCAGAACCCATCAA+GGG | - | chr4.4:47943198-47943217 | MS.gene78116:intron | 45.0% | |
| GAAAATGGTGCAACAGATGC+TGG | - | chr4.4:47942926-47942945 | MS.gene78116:CDS | 45.0% | |
| GAGTATCATGCTTCACCGAT+TGG | - | chr4.4:47944315-47944334 | MS.gene78116:intron | 45.0% | |
| GATGCATAATCGGCTACATG+AGG | + | chr4.4:47942546-47942565 | None:intergenic | 45.0% | |
| GCAACTGGTAACAAGTAAGC+TGG | + | chr4.4:47942477-47942496 | None:intergenic | 45.0% | |
| GCAGTCTTCTGTCTATCATC+TGG | + | chr4.4:47943182-47943201 | None:intergenic | 45.0% | |
| GGATGTATACGTGCAGTTTC+CGG | + | chr4.4:47945293-47945312 | None:intergenic | 45.0% | |
| GGCTTACAGGTTACAATTGC+CGG | - | chr4.4:47945271-47945290 | MS.gene78116:CDS | 45.0% | |
| TAGTCATGTGTTTAGCCTGC+TGG | + | chr4.4:47944446-47944465 | None:intergenic | 45.0% | |
| TATGGAGCCTGTAGTACCTT+TGG | - | chr4.4:47942707-47942726 | MS.gene78116:CDS | 45.0% | |
| TGATGCTCTTTCCAGAGTCA+TGG | - | chr4.4:47944086-47944105 | MS.gene78116:intron | 45.0% | |
| TGCAAATGAGTCTGCCAAGT+AGG | + | chr4.4:47943359-47943378 | None:intergenic | 45.0% | |
| TGCAGGCATTACTAGGACTA+TGG | - | chr4.4:47944344-47944363 | MS.gene78116:intron | 45.0% | |
| TGCTTCACATTCTTGGGAAC+AGG | + | chr4.4:47943542-47943561 | None:intergenic | 45.0% | |
| TGTGTTGCAATCTCCTCAAG+TGG | + | chr4.4:47942653-47942672 | None:intergenic | 45.0% | |
| TTGGCCAAATATGAAGTCGG+CGG | - | chr4.4:47944389-47944408 | MS.gene78116:intron | 45.0% | |
| TTGTTGCTCTGGCGTTTGTA+AGG | + | chr4.4:47943996-47944015 | None:intergenic | 45.0% | |
| ! | AAAGCTTTGGCCCAAGTCTT+TGG | + | chr4.4:47944876-47944895 | None:intergenic | 45.0% |
| ! | ATCATGCTTCACCGATTGGA+GGG | - | chr4.4:47944319-47944338 | MS.gene78116:intron | 45.0% |
| ! | CCATGATAATGCCATGACTC+TGG | + | chr4.4:47944100-47944119 | None:intergenic | 45.0% |
| ! | CCATTGTTTGGGTTTACCAG+TGG | - | chr4.4:47942344-47942363 | MS.gene78116:intron | 45.0% |
| ! | CTGCCATACACTGCTTTGAA+TGG | + | chr4.4:47944954-47944973 | None:intergenic | 45.0% |
| ! | GAGGAAAATGGACTCACACT+AGG | + | chr4.4:47942969-47942988 | None:intergenic | 45.0% |
| ! | GCTTACTTGTTACCAGTTGC+TGG | - | chr4.4:47942477-47942496 | MS.gene78116:intron | 45.0% |
| ! | GTTGCCATTTCACTAGCACT+TGG | + | chr4.4:47945469-47945488 | None:intergenic | 45.0% |
| ! | TATCATGCTTCACCGATTGG+AGG | - | chr4.4:47944318-47944337 | MS.gene78116:intron | 45.0% |
| !! | AATGCTTTGAAGGGCGTTAC+TGG | - | chr4.4:47942222-47942241 | MS.gene78116:intron | 45.0% |
| !! | ACTGGCTTGCCATTATCTTG+TGG | - | chr4.4:47944540-47944559 | MS.gene78116:intron | 45.0% |
| !! | CAAGATTGCTTTTGAAGGGG+AGG | - | chr4.4:47945565-47945584 | MS.gene78116:CDS | 45.0% |
| !! | GCATCTGTTTCTAGCACGAA+TGG | + | chr4.4:47943758-47943777 | None:intergenic | 45.0% |
| !! | TGAACCGCCGACTTCATATT+TGG | + | chr4.4:47944396-47944415 | None:intergenic | 45.0% |
| !! | TTGAAGGGCGTTACTGGATA+TGG | - | chr4.4:47942228-47942247 | MS.gene78116:intron | 45.0% |
| !! | TTGGGCCAAAGCTTTGAGTT+GGG | - | chr4.4:47944881-47944900 | MS.gene78116:intron | 45.0% |
| !!! | CTTTGAGTTGGGCAGAGTTT+TGG | - | chr4.4:47944892-47944911 | MS.gene78116:intron | 45.0% |
| !!! | GAACAAACTAGTTTTGCCGG+TGG | - | chr4.4:47944263-47944282 | MS.gene78116:intron | 45.0% |
| !!! | GCTGGAGCTGACTTGATTTT+AGG | - | chr4.4:47942495-47942514 | MS.gene78116:intron | 45.0% |
| AAACGCCAGAGCAACAAGCT+TGG | - | chr4.4:47943999-47944018 | MS.gene78116:intron | 50.0% | |
| AAGTTGCTGGCGCATTAGTG+AGG | + | chr4.4:47943253-47943272 | None:intergenic | 50.0% | |
| AATGGTGCAACAGATGCTGG+AGG | - | chr4.4:47942929-47942948 | MS.gene78116:CDS | 50.0% | |
| ACAAGCAGGGAAGGAGAATG+TGG | - | chr4.4:47944059-47944078 | MS.gene78116:intron | 50.0% | |
| ACATGACTACACTGCCAGCA+GGG | - | chr4.4:47944457-47944476 | MS.gene78116:intron | 50.0% | |
| ACCAGAACGTAAGTCGAGCT+TGG | + | chr4.4:47943138-47943157 | None:intergenic | 50.0% | |
| ACCTACTGCAGAGGCAACAT+GGG | - | chr4.4:47945493-47945512 | MS.gene78116:CDS | 50.0% | |
| AGAATGTCTGATCTGCCAGC+AGG | - | chr4.4:47944428-47944447 | MS.gene78116:intron | 50.0% | |
| AGTCAACATCCACCCAGCTA+TGG | - | chr4.4:47942749-47942768 | MS.gene78116:CDS | 50.0% | |
| ATAGCTGGGTGGATGTTGAC+TGG | + | chr4.4:47942750-47942769 | None:intergenic | 50.0% | |
| ATCAAGTCAGCTCCAGCAAC+TGG | + | chr4.4:47942492-47942511 | None:intergenic | 50.0% | |
| CACATGAGCACGTTGAGAGA+AGG | - | chr4.4:47945639-47945658 | MS.gene78116:CDS | 50.0% | |
| CAGCAGTTGTTTGAGCTGCA+GGG | - | chr4.4:47944744-47944763 | MS.gene78116:intron | 50.0% | |
| CAGCTGCTGTAGTTAATGGC+AGG | + | chr4.4:47945376-47945395 | None:intergenic | 50.0% | |
| CAGTAAGGCTTCACCTTCAC+AGG | + | chr4.4:47942876-47942895 | None:intergenic | 50.0% | |
| CGTGCTAGAAACAGATGCCT+CGG | - | chr4.4:47943760-47943779 | MS.gene78116:intron | 50.0% | |
| CTCTGCCCAACTCAAAGCTT+TGG | + | chr4.4:47944889-47944908 | None:intergenic | 50.0% | |
| GAACAAGCGTACAGTGTTGC+AGG | - | chr4.4:47945427-47945446 | MS.gene78116:CDS | 50.0% | |
| GACAACAAAGTGGCCATAGC+TGG | + | chr4.4:47942765-47942784 | None:intergenic | 50.0% | |
| GACGTGGACATAGTGGCAAA+TGG | - | chr4.4:47945605-47945624 | MS.gene78116:CDS | 50.0% | |
| GCAACAGATACCTACTGCAG+AGG | - | chr4.4:47945484-47945503 | MS.gene78116:CDS | 50.0% | |
| GCCAATACCCACTCAGGTAT+GGG | - | chr4.4:47944494-47944513 | MS.gene78116:intron | 50.0% | |
| GCCACTCATAATGCCCTTGA+TGG | + | chr4.4:47943214-47943233 | None:intergenic | 50.0% | |
| GCTGCTGTAGTTAATGGCAG+GGG | + | chr4.4:47945374-47945393 | None:intergenic | 50.0% | |
| GTGCTAGAAACAGATGCCTC+GGG | - | chr4.4:47943761-47943780 | MS.gene78116:intron | 50.0% | |
| GTGGACATAGTGGCAAATGG+TGG | - | chr4.4:47945608-47945627 | MS.gene78116:CDS | 50.0% | |
| TACCTACTGCAGAGGCAACA+TGG | - | chr4.4:47945492-47945511 | MS.gene78116:CDS | 50.0% | |
| TAGCTCAACTGCACCACTTG+AGG | - | chr4.4:47942637-47942656 | MS.gene78116:CDS | 50.0% | |
| TCACAAAGTGGTCCCACCTT+GGG | + | chr4.4:47945691-47945710 | None:intergenic | 50.0% | |
| TCCAAGCTCGACTTACGTTC+TGG | - | chr4.4:47943134-47943153 | MS.gene78116:intron | 50.0% | |
| TCCCATACCTGAGTGGGTAT+TGG | + | chr4.4:47944498-47944517 | None:intergenic | 50.0% | |
| TGAAAGCAGAAGGGGTGGTA+AGG | - | chr4.4:47942412-47942431 | MS.gene78116:intron | 50.0% | |
| TGAGATAGGCGACCAAGTGT+TGG | - | chr4.4:47945142-47945161 | MS.gene78116:intron | 50.0% | |
| TGCCAATACCCACTCAGGTA+TGG | - | chr4.4:47944493-47944512 | MS.gene78116:intron | 50.0% | |
| TGCTAGAAACAGATGCCTCG+GGG | - | chr4.4:47943762-47943781 | MS.gene78116:intron | 50.0% | |
| TGGTGCAGTTGAGCTACTTC+AGG | + | chr4.4:47942633-47942652 | None:intergenic | 50.0% | |
| TTGCGCTGTATAGGTTCCAC+TGG | + | chr4.4:47942363-47942382 | None:intergenic | 50.0% | |
| ! | AACTGCTTCCGATTGGCCAT+CGG | + | chr4.4:47944808-47944827 | None:intergenic | 50.0% |
| ! | ACAACATGGTGACGAAGACC+AGG | - | chr4.4:47942176-47942195 | MS.gene78116:intron | 50.0% |
| ! | GAGTGGCTTGTGATGCCATT+TGG | - | chr4.4:47943227-47943246 | MS.gene78116:intron | 50.0% |
| ! | TCAGGGTGTTTCCGTAGATC+AGG | - | chr4.4:47943490-47943509 | MS.gene78116:intron | 50.0% |
| !! | ACCTGAGTGGGTATTGGCAA+AGG | + | chr4.4:47944492-47944511 | None:intergenic | 50.0% |
| !! | CCCATCAAGGGCATTATGAG+TGG | - | chr4.4:47943210-47943229 | MS.gene78116:intron | 50.0% |
| !! | CTTGGGCCAAAGCTTTGAGT+TGG | - | chr4.4:47944880-47944899 | MS.gene78116:intron | 50.0% |
| !! | TGCAACCAAGCTTGTTGCTC+TGG | + | chr4.4:47944007-47944026 | None:intergenic | 50.0% |
| !!! | AGGGGTTTTCTAGGGCTTAC+AGG | - | chr4.4:47943566-47943585 | MS.gene78116:intron | 50.0% |
| AAAGGCTGCAACAACCCTGC+TGG | + | chr4.4:47944474-47944493 | None:intergenic | 55.0% | |
| ACAAAGTGGCCATAGCTGGG+TGG | + | chr4.4:47942761-47942780 | None:intergenic | 55.0% | |
| ATGCCTGCATGCCCTCCAAT+CGG | + | chr4.4:47944333-47944352 | None:intergenic | 55.0% | |
| ATTGGCCATCGGATTGAGGG+TGG | + | chr4.4:47944797-47944816 | None:intergenic | 55.0% | |
| CACATGACTACACTGCCAGC+AGG | - | chr4.4:47944456-47944475 | MS.gene78116:intron | 55.0% | |
| CCCTCAATCCGATGGCCAAT+CGG | - | chr4.4:47944797-47944816 | MS.gene78116:intron | 55.0% | |
| CTCACAAAGTGGTCCCACCT+TGG | + | chr4.4:47945692-47945711 | None:intergenic | 55.0% | |
| GCAGACTGGAGTTGCATTCC+AGG | + | chr4.4:47943854-47943873 | None:intergenic | 55.0% | |
| GCAGCAGTTGTTTGAGCTGC+AGG | - | chr4.4:47944743-47944762 | MS.gene78116:intron | 55.0% | |
| GCATACCACCCTCAATCCGA+TGG | - | chr4.4:47944789-47944808 | MS.gene78116:intron | 55.0% | |
| GCCTTTGCCAATACCCACTC+AGG | - | chr4.4:47944488-47944507 | MS.gene78116:intron | 55.0% | |
| GGATTGGACAGGTGGCTTAC+AGG | - | chr4.4:47945258-47945277 | MS.gene78116:CDS | 55.0% | |
| GGCGCATTAGTGAGGCCAAA+TGG | + | chr4.4:47943245-47943264 | None:intergenic | 55.0% | |
| GTGCAACAGATGCTGGAGGA+AGG | - | chr4.4:47942933-47942952 | MS.gene78116:CDS | 55.0% | |
| TACTTGGGACACGTGGTGTC+TGG | - | chr4.4:47943467-47943486 | MS.gene78116:intron | 55.0% | |
| TCCCATGTTGCCTCTGCAGT+AGG | + | chr4.4:47945497-47945516 | None:intergenic | 55.0% | |
| ! | CCGATTGGCCATCGGATTGA+GGG | + | chr4.4:47944800-47944819 | None:intergenic | 55.0% |
| ! | GAGGGCATGCAGGCATTACT+AGG | - | chr4.4:47944337-47944356 | MS.gene78116:intron | 55.0% |
| ! | TCCGATTGGCCATCGGATTG+AGG | + | chr4.4:47944801-47944820 | None:intergenic | 55.0% |
| !! | GCACCATGGCTAGCTTCACT+TGG | - | chr4.4:47942519-47942538 | MS.gene78116:intron | 55.0% |
| GAAACAGATGCCTCGGGGAC+TGG | - | chr4.4:47943767-47943786 | MS.gene78116:intron | 60.0% | |
| GGACACGTGGTGTCTGGTCA+GGG | - | chr4.4:47943473-47943492 | MS.gene78116:intron | 60.0% | |
| GGGCCAAGTGAAGCTAGCCA+TGG | + | chr4.4:47942525-47942544 | None:intergenic | 60.0% | |
| ! | TCACCGATTGGAGGGCATGC+AGG | - | chr4.4:47944327-47944346 | MS.gene78116:intron | 60.0% |
| ! | TGGGGGCGGTGTTGAGTCAA+GGG | - | chr4.4:47943792-47943811 | MS.gene78116:intron | 60.0% |
| AGATGCCTCGGGGACTGGAG+TGG | - | chr4.4:47943772-47943791 | MS.gene78116:intron | 65.0% | |
| ATGCCTCGGGGACTGGAGTG+GGG | - | chr4.4:47943774-47943793 | MS.gene78116:intron | 65.0% | |
| GATGCCTCGGGGACTGGAGT+GGG | - | chr4.4:47943773-47943792 | MS.gene78116:intron | 65.0% | |
| GGGACACGTGGTGTCTGGTC+AGG | - | chr4.4:47943472-47943491 | MS.gene78116:intron | 65.0% | |
| ! | GGGGCGGTGTTGAGTCAAGG+GGG | - | chr4.4:47943794-47943813 | MS.gene78116:intron | 65.0% |
| ! | GGGGGCGGTGTTGAGTCAAG+GGG | - | chr4.4:47943793-47943812 | MS.gene78116:intron | 65.0% |
| ! | GTGGGGGCGGTGTTGAGTCA+AGG | - | chr4.4:47943791-47943810 | MS.gene78116:intron | 65.0% |
| TGCCTCGGGGACTGGAGTGG+GGG | - | chr4.4:47943775-47943794 | MS.gene78116:intron | 70.0% | |
| CTCGGGGACTGGAGTGGGGG+CGG | - | chr4.4:47943778-47943797 | MS.gene78116:intron | 75.0% | |
| ! | CGCCCCCACTCCAGTCCCCG+AGG | + | chr4.4:47943780-47943799 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 47942117 | 47945860 | 47942117 | ID=MS.gene78116 |
| chr4.4 | mRNA | 47942117 | 47945860 | 47942117 | ID=MS.gene78116.t1;Parent=MS.gene78116 |
| chr4.4 | exon | 47945258 | 47945860 | 47945258 | ID=MS.gene78116.t1.exon1;Parent=MS.gene78116.t1 |
| chr4.4 | CDS | 47945258 | 47945860 | 47945258 | ID=cds.MS.gene78116.t1;Parent=MS.gene78116.t1 |
| chr4.4 | exon | 47942630 | 47942990 | 47942630 | ID=MS.gene78116.t1.exon2;Parent=MS.gene78116.t1 |
| chr4.4 | CDS | 47942630 | 47942990 | 47942630 | ID=cds.MS.gene78116.t1;Parent=MS.gene78116.t1 |
| chr4.4 | exon | 47942117 | 47942133 | 47942117 | ID=MS.gene78116.t1.exon3;Parent=MS.gene78116.t1 |
| chr4.4 | CDS | 47942117 | 47942133 | 47942117 | ID=cds.MS.gene78116.t1;Parent=MS.gene78116.t1 |
| Gene Sequence |
| Protein sequence |
