AlfalfaGEDB | MS.gene78137

M. sativa cultivar XinJiangDaYe / MS.gene78137

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78137.t1	XP_003606284.1	75	60	9	1	1	60	1	54	1.30E-13	85.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78137.t1	G7JM48	75.0	60	9	1	1	60	1	54	9.4e-14	85.1

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050953	MS.gene78137	0.802329	5.91E-49	-1.69E-46
MS.gene054405	MS.gene78137	0.80074	1.25E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78137.t1	MTR_4g055610	75.000	60	9	1	1	60	1	54	8.99e-23	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 8 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCTTTGTTCTCAAATCAAA+AGG	0.431632	4.4:-47502554	MS.gene78137:intron
CTGCTGTTGAGCTTGGAAGC+AGG	0.448537	4.4:+47502651	None:intergenic
CTTGAACACCAAGCTCAATT+GGG	0.466252	4.4:-47501978	MS.gene78137:CDS
GACGATTGCCCAATTGAGCT+TGG	0.544122	4.4:+47501970	None:intergenic
TCAACTACGATTTAGAGACA+TGG	0.691481	4.4:-47501949	MS.gene78137:CDS
TCATGTTCTGCTGTTGAGCT+TGG	0.442497	4.4:+47502644	None:intergenic
TCTTGAACACCAAGCTCAAT+TGG	0.331251	4.4:-47501979	MS.gene78137:CDS
TGCTGTTGAGCTTGGAAGCA+GGG	0.464847	4.4:+47502652	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATGAAAATAACCATTGGA+AGG	-	chr4.4:47502174-47502193	MS.gene78137:intron	30.0%
AGCAACATGAAAATAACCAT+TGG	-	chr4.4:47502170-47502189	MS.gene78137:intron	30.0%
ATAAGATAGAGTCATTGTCA+TGG	-	chr4.4:47502310-47502329	MS.gene78137:intron	30.0%
CAATGACTCTATCTTATGTT+TGG	+	chr4.4:47502307-47502326	None:intergenic	30.0%
CTCTTTGTTCTCAAATCAAA+AGG	-	chr4.4:47502039-47502058	MS.gene78137:intron	30.0%
TTTCTTAGTTATTGCAGCTA+TGG	-	chr4.4:47502557-47502576	MS.gene78137:CDS	30.0%
AAAATAACCATTGGAAGGAG+TGG	-	chr4.4:47502179-47502198	MS.gene78137:intron	35.0%
ATGCTTTCACATTACTTGGA+TGG	-	chr4.4:47502520-47502539	MS.gene78137:intron	35.0%
CCACAATTGATGTTGTTAAG+TGG	+	chr4.4:47502476-47502495	None:intergenic	35.0%
CCACTTAACAACATCAATTG+TGG	-	chr4.4:47502473-47502492	MS.gene78137:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	47501934	47502681	47501934	ID=MS.gene78137
chr4.4	mRNA	47501934	47502681	47501934	ID=MS.gene78137.t1;Parent=MS.gene78137
chr4.4	exon	47502555	47502681	47502555	ID=MS.gene78137.t1.exon1;Parent=MS.gene78137.t1
chr4.4	CDS	47502555	47502681	47502555	ID=cds.MS.gene78137.t1;Parent=MS.gene78137.t1
chr4.4	exon	47501934	47502004	47501934	ID=MS.gene78137.t1.exon2;Parent=MS.gene78137.t1
chr4.4	CDS	47501934	47502004	47501934	ID=cds.MS.gene78137.t1;Parent=MS.gene78137.t1

Gene Sequence

>MS.gene78137

ATGGGTACCCTGCTTCCAAGCTCAACAGCAGAACATGAAAAATCAGAGAAACAAAATATATCTTTACAAATAGATGAACACCAAAAAGATGTTGATGCAGGTGCTCTCTTTGTTCTCAAATCAAAAGGTATTACTCCTAATTTATACTTCTCGAGTTCTATGTTTAGTCTTGTATATAGAACATTATACTCCTGTGTTTCTTGTTCTTGTTGCATCTATCACCTTATTAATTCAAAAGCAACATGAAAATAACCATTGGAAGGAGTGGCGAAGCTAGAGTAATTTTTACGTGGGGCCCAAATACAAAGAATTATTTTCAGCCAAAGAAAATTTATCTTTTCTAAAATTTTATATATTAATATTAAATTTTCCAAACATAAGATAGAGTCATTGTCATGGATGATGGATTCTTGTTTTCTTATAGTTAATTGTTATCGACTAATTGGTTTAAGGAAGAGTGAATTTGTTAGCCTAACTCATACATTTGTGTTAATGGTTTTATTTTTATTTGTTTTAGGTTCATGGGTGCACTGTGGTTACCACTTAACAACATCAATTGTGGCCCCACCTCTCCTAAGTCTTCCTTATGCTTTCACATTACTTGGATGGACGGCTGGAATATTTTTCTTAGTTATTGCAGCTATGGTCACTTTCTATTCCTACTATTTATTATCTAGGGTTCTTGAACACCAAGCTCAATTGGGCAATCGTCAACTACGATTTAGAGACATGGCTCGAGACATTTTAG

Protein sequence

>MS.gene78137.t1

MGTLLPSSTAEHEKSEKQNISLQIDEHQKDVDAGALFVLKSKGFLNTKLNWAIVNYDLETWLETF