Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78149.t1 | XP_003595715.2 | 83.7 | 221 | 26 | 2 | 1 | 220 | 1 | 212 | 1.40E-67 | 266.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78149.t1 | Q8LDR0 | 90.6 | 53 | 5 | 0 | 35 | 87 | 50 | 102 | 4.7e-24 | 112.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78149.t1 | A0A396JAA5 | 83.7 | 221 | 26 | 2 | 1 | 220 | 1 | 212 | 1.0e-67 | 266.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene78149.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05625 | MS.gene78149 | 0.846454 | 2.15E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78149.t1 | MTR_2g059540 | 82.791 | 215 | 27 | 2 | 7 | 220 | 1 | 206 | 2.63e-107 | 307 |
MS.gene78149.t1 | MTR_2g096740 | 43.421 | 152 | 74 | 3 | 20 | 171 | 46 | 185 | 1.91e-32 | 119 |
MS.gene78149.t1 | MTR_2g096740 | 43.421 | 152 | 74 | 3 | 20 | 171 | 61 | 200 | 2.37e-32 | 119 |
MS.gene78149.t1 | MTR_4g109980 | 48.387 | 155 | 49 | 3 | 35 | 160 | 39 | 191 | 5.53e-31 | 116 |
MS.gene78149.t1 | MTR_3g091820 | 82.456 | 57 | 10 | 0 | 35 | 91 | 42 | 98 | 4.58e-29 | 110 |
MS.gene78149.t1 | MTR_4g022370 | 42.446 | 139 | 67 | 2 | 8 | 146 | 54 | 179 | 4.90e-29 | 111 |
MS.gene78149.t1 | MTR_4g063780 | 73.846 | 65 | 16 | 1 | 35 | 98 | 74 | 138 | 1.52e-28 | 110 |
MS.gene78149.t1 | MTR_8g015840 | 76.667 | 60 | 14 | 0 | 36 | 95 | 20 | 79 | 1.88e-28 | 107 |
MS.gene78149.t1 | MTR_8g068210 | 61.842 | 76 | 29 | 0 | 31 | 106 | 27 | 102 | 2.14e-28 | 109 |
MS.gene78149.t1 | MTR_4g088580 | 43.590 | 156 | 77 | 3 | 6 | 159 | 32 | 178 | 5.39e-28 | 109 |
MS.gene78149.t1 | MTR_8g079060 | 62.667 | 75 | 28 | 0 | 36 | 110 | 29 | 103 | 6.61e-28 | 105 |
MS.gene78149.t1 | MTR_8g479350 | 63.158 | 76 | 21 | 1 | 36 | 104 | 68 | 143 | 9.02e-28 | 108 |
MS.gene78149.t1 | MTR_7g059400 | 54.348 | 92 | 27 | 1 | 37 | 113 | 77 | 168 | 9.05e-28 | 108 |
MS.gene78149.t1 | MTR_7g024670 | 73.438 | 64 | 17 | 0 | 35 | 98 | 76 | 139 | 1.30e-27 | 108 |
MS.gene78149.t1 | MTR_8g027295 | 80.000 | 55 | 11 | 0 | 36 | 90 | 24 | 78 | 3.03e-27 | 105 |
MS.gene78149.t1 | MTR_3g090430 | 67.164 | 67 | 22 | 0 | 31 | 97 | 46 | 112 | 3.63e-27 | 106 |
MS.gene78149.t1 | MTR_1g077600 | 72.414 | 58 | 16 | 0 | 35 | 92 | 42 | 99 | 5.67e-27 | 104 |
MS.gene78149.t1 | MTR_1g077600 | 72.414 | 58 | 16 | 0 | 35 | 92 | 42 | 99 | 7.01e-27 | 104 |
MS.gene78149.t1 | MTR_2g014060 | 74.138 | 58 | 15 | 0 | 30 | 87 | 19 | 76 | 8.14e-27 | 105 |
MS.gene78149.t1 | MTR_2g093220 | 62.667 | 75 | 21 | 1 | 16 | 90 | 27 | 94 | 8.16e-27 | 104 |
MS.gene78149.t1 | MTR_7g010950 | 65.714 | 70 | 23 | 1 | 36 | 105 | 135 | 203 | 9.78e-27 | 107 |
MS.gene78149.t1 | MTR_8g044220 | 56.164 | 73 | 32 | 0 | 19 | 91 | 101 | 173 | 1.40e-26 | 106 |
MS.gene78149.t1 | MTR_2g013370 | 57.692 | 78 | 32 | 1 | 15 | 92 | 25 | 101 | 1.68e-26 | 103 |
MS.gene78149.t1 | MTR_6g012450 | 58.442 | 77 | 27 | 1 | 20 | 91 | 115 | 191 | 2.02e-26 | 106 |
MS.gene78149.t1 | MTR_4g461080 | 62.921 | 89 | 28 | 2 | 35 | 118 | 28 | 116 | 2.31e-26 | 103 |
MS.gene78149.t1 | MTR_3g077750 | 56.977 | 86 | 34 | 1 | 1 | 86 | 29 | 111 | 9.70e-26 | 102 |
MS.gene78149.t1 | MTR_2g014170 | 85.714 | 49 | 7 | 0 | 35 | 83 | 44 | 92 | 1.15e-25 | 101 |
MS.gene78149.t1 | MTR_7g086780 | 56.164 | 73 | 32 | 0 | 17 | 89 | 80 | 152 | 1.19e-25 | 103 |
MS.gene78149.t1 | MTR_5g031440 | 78.431 | 51 | 11 | 0 | 36 | 86 | 43 | 93 | 1.41e-25 | 102 |
MS.gene78149.t1 | MTR_3g435480 | 62.319 | 69 | 26 | 0 | 36 | 104 | 136 | 204 | 1.96e-25 | 103 |
MS.gene78149.t1 | MTR_2g016030 | 58.108 | 74 | 28 | 1 | 36 | 106 | 47 | 120 | 2.90e-25 | 97.1 |
MS.gene78149.t1 | MTR_4g082060 | 66.102 | 59 | 20 | 0 | 36 | 94 | 122 | 180 | 1.20e-24 | 100 |
MS.gene78149.t1 | MTR_1g056810 | 64.516 | 62 | 22 | 0 | 29 | 90 | 5 | 66 | 2.45e-24 | 97.8 |
MS.gene78149.t1 | MTR_6g027450 | 67.273 | 55 | 18 | 0 | 36 | 90 | 89 | 143 | 5.43e-24 | 97.8 |
MS.gene78149.t1 | MTR_4g089095 | 73.684 | 57 | 14 | 1 | 36 | 92 | 50 | 105 | 6.35e-24 | 97.1 |
MS.gene78149.t1 | MTR_4g089095 | 73.684 | 57 | 14 | 1 | 36 | 92 | 16 | 71 | 7.03e-24 | 96.3 |
MS.gene78149.t1 | MTR_5g041380 | 63.492 | 63 | 23 | 0 | 36 | 98 | 127 | 189 | 1.62e-22 | 94.4 |
MS.gene78149.t1 | MTR_5g041530 | 52.778 | 72 | 34 | 0 | 18 | 89 | 122 | 193 | 1.70e-22 | 94.4 |
MS.gene78149.t1 | MTR_5g041400 | 63.492 | 63 | 23 | 0 | 36 | 98 | 119 | 181 | 1.80e-22 | 94.0 |
MS.gene78149.t1 | MTR_6g027460 | 66.667 | 54 | 18 | 0 | 36 | 89 | 96 | 149 | 2.07e-22 | 94.0 |
MS.gene78149.t1 | MTR_5g041420 | 48.148 | 81 | 42 | 0 | 18 | 98 | 120 | 200 | 2.14e-22 | 93.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78149.t1 | AT5G60850 | 71.429 | 91 | 23 | 2 | 18 | 108 | 34 | 121 | 3.15e-39 | 137 |
MS.gene78149.t1 | AT1G51700 | 68.421 | 76 | 24 | 0 | 23 | 98 | 20 | 95 | 2.43e-32 | 116 |
MS.gene78149.t1 | AT3G45610 | 45.205 | 146 | 69 | 4 | 35 | 178 | 39 | 175 | 1.27e-30 | 113 |
MS.gene78149.t1 | AT5G60200 | 62.338 | 77 | 25 | 1 | 33 | 109 | 52 | 124 | 1.85e-30 | 113 |
MS.gene78149.t1 | AT5G65590 | 75.758 | 66 | 16 | 0 | 36 | 101 | 41 | 106 | 4.97e-30 | 113 |
MS.gene78149.t1 | AT5G66940 | 74.242 | 66 | 16 | 1 | 36 | 100 | 32 | 97 | 7.58e-30 | 110 |
MS.gene78149.t1 | AT3G55370 | 70.149 | 67 | 20 | 0 | 35 | 101 | 75 | 141 | 2.27e-29 | 112 |
MS.gene78149.t1 | AT3G55370 | 70.149 | 67 | 20 | 0 | 35 | 101 | 75 | 141 | 2.27e-29 | 112 |
MS.gene78149.t1 | AT3G55370 | 70.149 | 67 | 20 | 0 | 35 | 101 | 120 | 186 | 4.81e-29 | 112 |
MS.gene78149.t1 | AT3G21270 | 88.462 | 52 | 6 | 0 | 36 | 87 | 29 | 80 | 6.32e-29 | 107 |
MS.gene78149.t1 | AT1G07640 | 81.034 | 58 | 10 | 1 | 36 | 92 | 21 | 78 | 7.60e-29 | 109 |
MS.gene78149.t1 | AT1G07640 | 81.034 | 58 | 10 | 1 | 36 | 92 | 77 | 134 | 1.18e-28 | 110 |
MS.gene78149.t1 | AT1G07640 | 81.034 | 58 | 10 | 1 | 36 | 92 | 85 | 142 | 1.43e-28 | 110 |
MS.gene78149.t1 | AT3G61850 | 74.194 | 62 | 16 | 0 | 36 | 97 | 62 | 123 | 2.42e-28 | 108 |
MS.gene78149.t1 | AT3G61850 | 74.194 | 62 | 16 | 0 | 36 | 97 | 62 | 123 | 2.42e-28 | 108 |
MS.gene78149.t1 | AT3G61850 | 74.194 | 62 | 16 | 0 | 36 | 97 | 74 | 135 | 2.92e-28 | 108 |
MS.gene78149.t1 | AT3G61850 | 74.194 | 62 | 16 | 0 | 36 | 97 | 62 | 123 | 3.94e-28 | 108 |
MS.gene78149.t1 | AT3G61850 | 74.194 | 62 | 16 | 0 | 36 | 97 | 74 | 135 | 4.74e-28 | 108 |
MS.gene78149.t1 | AT4G38000 | 76.786 | 56 | 13 | 0 | 35 | 90 | 40 | 95 | 6.63e-28 | 106 |
MS.gene78149.t1 | AT3G50410 | 62.963 | 81 | 26 | 2 | 17 | 93 | 8 | 88 | 9.32e-28 | 106 |
MS.gene78149.t1 | AT2G37590 | 56.410 | 78 | 34 | 0 | 15 | 92 | 68 | 145 | 1.35e-27 | 107 |
MS.gene78149.t1 | AT2G28810 | 81.132 | 53 | 10 | 0 | 35 | 87 | 76 | 128 | 3.16e-27 | 106 |
MS.gene78149.t1 | AT1G28310 | 78.947 | 57 | 12 | 0 | 36 | 92 | 27 | 83 | 3.32e-27 | 105 |
MS.gene78149.t1 | AT1G28310 | 78.947 | 57 | 12 | 0 | 36 | 92 | 51 | 107 | 4.33e-27 | 106 |
MS.gene78149.t1 | AT2G28810 | 81.132 | 53 | 10 | 0 | 35 | 87 | 93 | 145 | 4.77e-27 | 106 |
MS.gene78149.t1 | AT3G52440 | 60.274 | 73 | 29 | 0 | 33 | 105 | 22 | 94 | 7.85e-27 | 103 |
MS.gene78149.t1 | AT3G52440 | 64.706 | 68 | 24 | 0 | 38 | 105 | 46 | 113 | 1.21e-26 | 103 |
MS.gene78149.t1 | AT4G24060 | 76.786 | 56 | 13 | 0 | 35 | 90 | 52 | 107 | 1.83e-26 | 104 |
MS.gene78149.t1 | AT4G21050 | 66.197 | 71 | 23 | 1 | 38 | 107 | 26 | 96 | 1.87e-26 | 101 |
MS.gene78149.t1 | AT2G28510 | 70.492 | 61 | 18 | 0 | 35 | 95 | 47 | 107 | 4.33e-26 | 102 |
MS.gene78149.t1 | AT5G02460 | 75.000 | 56 | 14 | 0 | 35 | 90 | 94 | 149 | 1.09e-25 | 103 |
MS.gene78149.t1 | AT1G21340 | 70.492 | 61 | 18 | 0 | 35 | 95 | 37 | 97 | 1.21e-25 | 100 |
MS.gene78149.t1 | AT4G00940 | 81.132 | 53 | 10 | 0 | 38 | 90 | 70 | 122 | 1.35e-25 | 101 |
MS.gene78149.t1 | AT4G00940 | 81.132 | 53 | 10 | 0 | 38 | 90 | 70 | 122 | 1.35e-25 | 101 |
MS.gene78149.t1 | AT4G00940 | 81.132 | 53 | 10 | 0 | 38 | 90 | 70 | 122 | 1.35e-25 | 101 |
MS.gene78149.t1 | AT1G64620 | 81.633 | 49 | 9 | 0 | 35 | 83 | 48 | 96 | 1.37e-25 | 102 |
MS.gene78149.t1 | AT3G47500 | 50.943 | 106 | 36 | 3 | 17 | 118 | 91 | 184 | 1.91e-25 | 103 |
MS.gene78149.t1 | AT1G29160 | 58.571 | 70 | 29 | 0 | 36 | 105 | 62 | 131 | 2.42e-25 | 97.8 |
MS.gene78149.t1 | AT5G39660 | 74.074 | 54 | 14 | 0 | 36 | 89 | 138 | 191 | 4.71e-25 | 102 |
MS.gene78149.t1 | AT5G39660 | 74.074 | 54 | 14 | 0 | 36 | 89 | 138 | 191 | 4.71e-25 | 102 |
MS.gene78149.t1 | AT5G39660 | 74.074 | 54 | 14 | 0 | 36 | 89 | 138 | 191 | 4.71e-25 | 102 |
MS.gene78149.t1 | AT2G46590 | 58.586 | 99 | 36 | 2 | 36 | 131 | 80 | 176 | 6.45e-25 | 100 |
MS.gene78149.t1 | AT2G34140 | 72.222 | 54 | 15 | 0 | 36 | 89 | 58 | 111 | 6.52e-25 | 96.7 |
MS.gene78149.t1 | AT2G46590 | 58.586 | 99 | 36 | 2 | 36 | 131 | 68 | 164 | 6.70e-25 | 100 |
MS.gene78149.t1 | AT1G47655 | 71.930 | 57 | 14 | 1 | 29 | 83 | 20 | 76 | 1.97e-24 | 96.3 |
MS.gene78149.t1 | AT5G62430 | 58.904 | 73 | 29 | 1 | 36 | 107 | 54 | 126 | 2.46e-24 | 98.2 |
MS.gene78149.t1 | AT4G21040 | 60.000 | 70 | 28 | 0 | 38 | 107 | 27 | 96 | 1.10e-23 | 95.1 |
MS.gene78149.t1 | AT1G69570 | 70.370 | 54 | 16 | 0 | 36 | 89 | 132 | 185 | 1.96e-23 | 97.1 |
MS.gene78149.t1 | AT1G26790 | 70.370 | 54 | 16 | 0 | 36 | 89 | 111 | 164 | 2.40e-23 | 96.7 |
MS.gene78149.t1 | AT5G62940 | 78.000 | 50 | 11 | 0 | 37 | 86 | 74 | 123 | 4.82e-23 | 95.9 |
MS.gene78149.t1 | AT4G21080 | 58.824 | 68 | 28 | 0 | 38 | 105 | 27 | 94 | 4.10e-22 | 91.3 |
MS.gene78149.t1 | AT4G21030 | 58.333 | 60 | 25 | 0 | 38 | 97 | 23 | 82 | 1.79e-15 | 72.4 |
Find 53 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCAATGATGTTGTTTCTTA+TGG | 0.092194 | 2.4:-33221821 | MS.gene78149:CDS |
CAGCAGTTATCAAATGAATT+TGG | 0.217916 | 2.4:-33221740 | MS.gene78149:CDS |
TCTTTGATTTCTTTGATTTA+CGG | 0.270159 | 2.4:+33222017 | None:intergenic |
CCAATGATGTTGTTTCTTAT+GGG | 0.276734 | 2.4:-33221820 | MS.gene78149:CDS |
CTTTGATTTCTTTGATTTAC+GGG | 0.312389 | 2.4:+33222018 | None:intergenic |
GATGTTGTTTCTTATGGGTT+TGG | 0.359219 | 2.4:-33221815 | MS.gene78149:CDS |
GCACCGTTGATCAGTCTTAC+TGG | 0.368181 | 2.4:-33221691 | MS.gene78149:CDS |
ATGTTGTTTCTTATGGGTTT+GGG | 0.381004 | 2.4:-33221814 | MS.gene78149:CDS |
ATGAATTTGGATCGTTGGAT+TGG | 0.382150 | 2.4:-33221727 | MS.gene78149:CDS |
GTAAGAACTGCCGTCGCTAC+TGG | 0.393302 | 2.4:-33222084 | MS.gene78149:CDS |
ACAGTGAAGGTTCAACCGTT+AGG | 0.410245 | 2.4:-33221907 | MS.gene78149:CDS |
ATCAAATGAATTTGGATCGT+TGG | 0.421631 | 2.4:-33221732 | MS.gene78149:CDS |
TGAATTTGGATCGTTGGATT+GGG | 0.437910 | 2.4:-33221726 | MS.gene78149:CDS |
GATGATGATAATTCTGGTTA+TGG | 0.445814 | 2.4:+33222200 | None:intergenic |
CAGTGAAGGTTCAACCGTTA+GGG | 0.455669 | 2.4:-33221906 | MS.gene78149:CDS |
TGCCGTCGCTACTGGACTAT+AGG | 0.462115 | 2.4:-33222076 | MS.gene78149:CDS |
TGGCGTGCTTGCTGCTGAAA+CGG | 0.467885 | 2.4:+33221973 | None:intergenic |
CCCATAAGAAACAACATCAT+TGG | 0.473053 | 2.4:+33221820 | None:intergenic |
CACGCCAACACCACCTCCAC+TGG | 0.474815 | 2.4:-33221957 | MS.gene78149:CDS |
CTTACTGGACACACTCTCAT+TGG | 0.475567 | 2.4:-33221676 | MS.gene78149:CDS |
TTATCAGCTTCCAGTGGAGG+TGG | 0.483911 | 2.4:+33221947 | None:intergenic |
AATGCAAGAAATTCATTCGA+TGG | 0.486084 | 2.4:-33222272 | MS.gene78149:CDS |
GAAATTCATTCGATGGGAGG+TGG | 0.516720 | 2.4:-33222265 | MS.gene78149:CDS |
ATGATAATTCTGGTTATGGT+GGG | 0.521689 | 2.4:+33222204 | None:intergenic |
GCTTCCAGTGGAGGTGGTGT+TGG | 0.521828 | 2.4:+33221953 | None:intergenic |
GATGATAATTCTGGTTATGG+TGG | 0.523805 | 2.4:+33222203 | None:intergenic |
GGATCGTTGGATTGGGAAGG+TGG | 0.526946 | 2.4:-33221719 | MS.gene78149:CDS |
TACGGGAACAACCGCCGACC+GGG | 0.531411 | 2.4:+33222035 | None:intergenic |
TTTGGATCGTTGGATTGGGA+AGG | 0.535121 | 2.4:-33221722 | MS.gene78149:CDS |
TTACGGGAACAACCGCCGAC+CGG | 0.535490 | 2.4:+33222034 | None:intergenic |
CTTCGTAACGTCCCGGTCGG+CGG | 0.554145 | 2.4:-33222046 | MS.gene78149:CDS |
ATGCAAGAAATTCATTCGAT+GGG | 0.560936 | 2.4:-33222271 | MS.gene78149:CDS |
GCTTGCTGCTGAAACGGTGA+TGG | 0.562137 | 2.4:+33221979 | None:intergenic |
TGGCGTCCTTCGTAACGTCC+CGG | 0.563071 | 2.4:-33222053 | MS.gene78149:CDS |
ATTCATTTGATAACTGCTGA+TGG | 0.567874 | 2.4:+33221744 | None:intergenic |
GACTTATCAGCTTCCAGTGG+AGG | 0.568248 | 2.4:+33221944 | None:intergenic |
GTCCTTCGTAACGTCCCGGT+CGG | 0.573615 | 2.4:-33222049 | MS.gene78149:CDS |
GATTCTCATTCTAACAGTGA+AGG | 0.590117 | 2.4:-33221920 | MS.gene78149:CDS |
TGTGGTACAGCACGGAGACT+CGG | 0.595362 | 2.4:-33221777 | MS.gene78149:CDS |
CGCCGACCGGGACGTTACGA+AGG | 0.605026 | 2.4:+33222047 | None:intergenic |
AGAAATGACGAGGCTGAGAG+AGG | 0.614353 | 2.4:+33222107 | None:intergenic |
CAAGAAATTCATTCGATGGG+AGG | 0.621582 | 2.4:-33222268 | MS.gene78149:CDS |
TAAATCAAAGAAATCAAAGA+CGG | 0.630139 | 2.4:-33222014 | MS.gene78149:CDS |
TGGGAATGATCAAGTACATG+TGG | 0.648978 | 2.4:-33221795 | MS.gene78149:CDS |
TGGTTGAACTTGAAGTTACG+AGG | 0.652946 | 2.4:+33221840 | None:intergenic |
CACCTATAGTCCAGTAGCGA+CGG | 0.655105 | 2.4:+33222074 | None:intergenic |
CAAGTACATGTGGTACAGCA+CGG | 0.660421 | 2.4:-33221785 | MS.gene78149:CDS |
TATAACAGAGTTAACCCTAA+CGG | 0.665595 | 2.4:+33221892 | None:intergenic |
CGTCGCTACTGGACTATAGG+TGG | 0.666718 | 2.4:-33222073 | MS.gene78149:CDS |
TCTGACTTATCAGCTTCCAG+TGG | 0.676214 | 2.4:+33221941 | None:intergenic |
CAGTTCTTACAGAAATGACG+AGG | 0.702494 | 2.4:+33222097 | None:intergenic |
TGTCCAGTAAGACTGATCAA+CGG | 0.726070 | 2.4:+33221688 | None:intergenic |
GTGTTGAAGGAATTACAGCG+AGG | 0.733816 | 2.4:+33222157 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATCAAAGAAATCAAAGA+CGG | - | chr2.4:33221888-33221907 | MS.gene78149:CDS | 20.0% |
!!! | TCTTTGATTTCTTTGATTTA+CGG | + | chr2.4:33221888-33221907 | None:intergenic | 20.0% |
!! | CTTTGATTTCTTTGATTTAC+GGG | + | chr2.4:33221887-33221906 | None:intergenic | 25.0% |
ATCAAATGAATTTGGATCGT+TGG | - | chr2.4:33222170-33222189 | MS.gene78149:CDS | 30.0% | |
ATGCAAGAAATTCATTCGAT+GGG | - | chr2.4:33221631-33221650 | MS.gene78149:CDS | 30.0% | |
CAGCAGTTATCAAATGAATT+TGG | - | chr2.4:33222162-33222181 | MS.gene78149:CDS | 30.0% | |
TATAACAGAGTTAACCCTAA+CGG | + | chr2.4:33222013-33222032 | None:intergenic | 30.0% | |
! | ATGATAATTCTGGTTATGGT+GGG | + | chr2.4:33221701-33221720 | None:intergenic | 30.0% |
! | ATTCATTTGATAACTGCTGA+TGG | + | chr2.4:33222161-33222180 | None:intergenic | 30.0% |
! | GATGATGATAATTCTGGTTA+TGG | + | chr2.4:33221705-33221724 | None:intergenic | 30.0% |
! | GATGATGATGATGATAATTC+TGG | + | chr2.4:33221711-33221730 | None:intergenic | 30.0% |
!! | ACCAATGATGTTGTTTCTTA+TGG | - | chr2.4:33222081-33222100 | MS.gene78149:CDS | 30.0% |
!! | ATGTTGTTTCTTATGGGTTT+GGG | - | chr2.4:33222088-33222107 | MS.gene78149:CDS | 30.0% |
!! | CCAATGATGTTGTTTCTTAT+GGG | - | chr2.4:33222082-33222101 | MS.gene78149:CDS | 30.0% |
!!! | TGGAAATCTTTTTTGTGTTG+AGG | - | chr2.4:33221657-33221676 | MS.gene78149:CDS | 30.0% |
ATGAATTTGGATCGTTGGAT+TGG | - | chr2.4:33222175-33222194 | MS.gene78149:CDS | 35.0% | |
CCCATAAGAAACAACATCAT+TGG | + | chr2.4:33222085-33222104 | None:intergenic | 35.0% | |
GATTCTCATTCTAACAGTGA+AGG | - | chr2.4:33221982-33222001 | MS.gene78149:CDS | 35.0% | |
TCAGGGAAGATGAAAAAGAA+AGG | + | chr2.4:33222274-33222293 | None:intergenic | 35.0% | |
TGAATTTGGATCGTTGGATT+GGG | - | chr2.4:33222176-33222195 | MS.gene78149:CDS | 35.0% | |
! | GATGATAATTCTGGTTATGG+TGG | + | chr2.4:33221702-33221721 | None:intergenic | 35.0% |
! | GTAGCAGAATTTTGTGTTGA+AGG | + | chr2.4:33221761-33221780 | None:intergenic | 35.0% |
!! | GATGTTGTTTCTTATGGGTT+TGG | - | chr2.4:33222087-33222106 | MS.gene78149:CDS | 35.0% |
CAAGAAATTCATTCGATGGG+AGG | - | chr2.4:33221634-33221653 | MS.gene78149:CDS | 40.0% | |
CAGTTCTTACAGAAATGACG+AGG | + | chr2.4:33221808-33221827 | None:intergenic | 40.0% | |
TGGGAATGATCAAGTACATG+TGG | - | chr2.4:33222107-33222126 | MS.gene78149:CDS | 40.0% | |
TGGTTGAACTTGAAGTTACG+AGG | + | chr2.4:33222065-33222084 | None:intergenic | 40.0% | |
TGTCCAGTAAGACTGATCAA+CGG | + | chr2.4:33222217-33222236 | None:intergenic | 40.0% | |
ACAGTGAAGGTTCAACCGTT+AGG | - | chr2.4:33221995-33222014 | MS.gene78149:CDS | 45.0% | |
CAAGTACATGTGGTACAGCA+CGG | - | chr2.4:33222117-33222136 | MS.gene78149:CDS | 45.0% | |
CAGTGAAGGTTCAACCGTTA+GGG | - | chr2.4:33221996-33222015 | MS.gene78149:CDS | 45.0% | |
CTTACTGGACACACTCTCAT+TGG | - | chr2.4:33222226-33222245 | MS.gene78149:CDS | 45.0% | |
GAAATTCATTCGATGGGAGG+TGG | - | chr2.4:33221637-33221656 | MS.gene78149:CDS | 45.0% | |
GTGTTGAAGGAATTACAGCG+AGG | + | chr2.4:33221748-33221767 | None:intergenic | 45.0% | |
TCTGACTTATCAGCTTCCAG+TGG | + | chr2.4:33221964-33221983 | None:intergenic | 45.0% | |
! | TTTGGATCGTTGGATTGGGA+AGG | - | chr2.4:33222180-33222199 | MS.gene78149:CDS | 45.0% |
AGAAATGACGAGGCTGAGAG+AGG | + | chr2.4:33221798-33221817 | None:intergenic | 50.0% | |
CACCTATAGTCCAGTAGCGA+CGG | + | chr2.4:33221831-33221850 | None:intergenic | 50.0% | |
GACTTATCAGCTTCCAGTGG+AGG | + | chr2.4:33221961-33221980 | None:intergenic | 50.0% | |
GCACCGTTGATCAGTCTTAC+TGG | - | chr2.4:33222211-33222230 | MS.gene78149:CDS | 50.0% | |
TTATCAGCTTCCAGTGGAGG+TGG | + | chr2.4:33221958-33221977 | None:intergenic | 50.0% | |
CGTCGCTACTGGACTATAGG+TGG | - | chr2.4:33221829-33221848 | MS.gene78149:CDS | 55.0% | |
GTAAGAACTGCCGTCGCTAC+TGG | - | chr2.4:33221818-33221837 | MS.gene78149:CDS | 55.0% | |
TGCCGTCGCTACTGGACTAT+AGG | - | chr2.4:33221826-33221845 | MS.gene78149:CDS | 55.0% | |
TGTGGTACAGCACGGAGACT+CGG | - | chr2.4:33222125-33222144 | MS.gene78149:CDS | 55.0% | |
! | GCTTGCTGCTGAAACGGTGA+TGG | + | chr2.4:33221926-33221945 | None:intergenic | 55.0% |
! | GGATCGTTGGATTGGGAAGG+TGG | - | chr2.4:33222183-33222202 | MS.gene78149:CDS | 55.0% |
! | TGGCGTGCTTGCTGCTGAAA+CGG | + | chr2.4:33221932-33221951 | None:intergenic | 55.0% |
GCTTCCAGTGGAGGTGGTGT+TGG | + | chr2.4:33221952-33221971 | None:intergenic | 60.0% | |
GTCCTTCGTAACGTCCCGGT+CGG | - | chr2.4:33221853-33221872 | MS.gene78149:CDS | 60.0% | |
TGGCGTCCTTCGTAACGTCC+CGG | - | chr2.4:33221849-33221868 | MS.gene78149:CDS | 60.0% | |
TTACGGGAACAACCGCCGAC+CGG | + | chr2.4:33221871-33221890 | None:intergenic | 60.0% | |
CACGCCAACACCACCTCCAC+TGG | - | chr2.4:33221945-33221964 | MS.gene78149:CDS | 65.0% | |
CTTCGTAACGTCCCGGTCGG+CGG | - | chr2.4:33221856-33221875 | MS.gene78149:CDS | 65.0% | |
TACGGGAACAACCGCCGACC+GGG | + | chr2.4:33221870-33221889 | None:intergenic | 65.0% | |
CGCCGACCGGGACGTTACGA+AGG | + | chr2.4:33221858-33221877 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 33221631 | 33222293 | 33221631 | ID=MS.gene78149 |
chr2.4 | mRNA | 33221631 | 33222293 | 33221631 | ID=MS.gene78149.t1;Parent=MS.gene78149 |
chr2.4 | exon | 33221631 | 33222293 | 33221631 | ID=MS.gene78149.t1.exon1;Parent=MS.gene78149.t1 |
chr2.4 | CDS | 33221631 | 33222293 | 33221631 | ID=cds.MS.gene78149.t1;Parent=MS.gene78149.t1 |
Gene Sequence |
Protein sequence |