AlfalfaGEDB | MS.gene78374

M. sativa cultivar XinJiangDaYe / MS.gene78374

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78374.t1	XP_003597453.1	95	383	16	3	1	381	1	382	2.10E-204	721.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78374.t1	Q9SYB9	56.9	399	146	8	3	378	9	404	1.5e-118	427.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78374.t1	G7IUD9	95.0	383	16	3	1	381	1	382	1.5e-204	721.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene005801	MS.gene78374	PPI
MS.gene044075	MS.gene78374	PPI
MS.gene20332	MS.gene78374	PPI
MS.gene24439	MS.gene78374	PPI
MS.gene78374	MS.gene00459	PPI
MS.gene78374	MS.gene02711	PPI
MS.gene78374	MS.gene002921	PPI
MS.gene78374	MS.gene09999	PPI
MS.gene78374	MS.gene00848	PPI
MS.gene78374	MS.gene67184	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78374.t1	MTR_2g098240	94.778	383	17	3	1	381	1	382	0.0	713
MS.gene78374.t1	MTR_4g065080	64.232	397	96	9	6	357	4	399	3.18e-174	492
MS.gene78374.t1	MTR_8g011780	44.789	355	161	6	9	333	12	361	4.14e-98	298
MS.gene78374.t1	MTR_7g053200	41.408	355	175	6	10	336	6	355	9.84e-89	274
MS.gene78374.t1	MTR_3g010260	37.887	388	195	9	11	355	411	795	1.08e-76	253
MS.gene78374.t1	MTR_4g113790	39.037	374	174	7	12	334	88	458	1.09e-76	245
MS.gene78374.t1	MTR_1g060790	39.944	358	176	7	12	333	467	821	2.88e-76	252
MS.gene78374.t1	MTR_2g027240	38.736	364	178	8	12	333	201	561	7.70e-76	246
MS.gene78374.t1	MTR_8g446990	39.011	364	179	8	8	333	125	483	2.77e-75	243
MS.gene78374.t1	MTR_2g062850	38.933	375	182	9	1	337	159	524	9.60e-75	242

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78374.t1	AT1G51170	56.709	395	145	8	7	378	13	404	1.94e-147	423
MS.gene78374.t1	AT3G20830	56.927	397	140	7	12	381	16	408	1.16e-146	421
MS.gene78374.t1	AT3G25250	47.839	347	155	5	12	338	12	352	8.48e-103	310
MS.gene78374.t1	AT4G13000	45.507	345	170	5	4	337	7	344	8.53e-99	298
MS.gene78374.t1	AT1G79250	38.220	382	188	8	12	347	141	520	1.22e-78	252
MS.gene78374.t1	AT1G79250	38.220	382	188	8	12	347	141	520	1.22e-78	252
MS.gene78374.t1	AT1G79250	38.220	382	188	8	12	347	141	520	1.22e-78	252
MS.gene78374.t1	AT1G79250	38.220	382	188	8	12	347	141	520	1.22e-78	252
MS.gene78374.t1	AT5G55910	39.617	366	179	7	12	337	104	467	2.61e-77	247
MS.gene78374.t1	AT5G55910	39.617	366	179	7	12	337	104	467	2.61e-77	247

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Find 95 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGAAATGTTGACGG+AGG	0.693491	2.3:-5119214	MS.gene78374:CDS
AAACGGCTCAGTTAATTGGC+TGG	0.467130	2.3:-5119917	MS.gene78374:CDS
AAATAACCGTCATCTCTCGA+CGG	0.670876	2.3:+5119171	None:intergenic
AAATGTTGACGGAGGTTGTA+CGG	0.525214	2.3:-5119206	MS.gene78374:CDS
AACGGCTCAGTTAATTGGCT+GGG	0.516902	2.3:-5119916	MS.gene78374:CDS
AACGTTCTTATTCAACAATC+TGG	0.349756	2.3:-5119732	MS.gene78374:CDS
AACTACTTTGAGTGCCATGG+TGG	0.680601	2.3:+5120043	None:intergenic
AAGAGATTAGGTTACGTTGG+AGG	0.527362	2.3:-5119276	MS.gene78374:CDS
AAGGATCCATTGAAGAGATT+AGG	0.425634	2.3:-5119288	MS.gene78374:CDS
AATATTAGGCAAAGGAGCAA+TGG	0.515425	2.3:-5120105	MS.gene78374:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACGTTCTTATTCAACAATC+TGG	-	chr2.3:5119479-5119498	MS.gene78374:CDS	30.0%
ACGTAAACTTTCACACAAAA+CGG	-	chr2.3:5119532-5119551	MS.gene78374:CDS	30.0%
CTCAAACCACTCAAAATATT+AGG	-	chr2.3:5119092-5119111	MS.gene78374:CDS	30.0%
TTCAAGAAGCTTGAATTTGT+TGG	-	chr2.3:5119857-5119876	MS.gene78374:CDS	30.0%
TTCTTATTCTTCCCCTTAAA+CGG	+	chr2.3:5119815-5119834	None:intergenic	30.0%
AAGGATCCATTGAAGAGATT+AGG	-	chr2.3:5119923-5119942	MS.gene78374:CDS	35.0%
AATATTAGGCAAAGGAGCAA+TGG	-	chr2.3:5119106-5119125	MS.gene78374:CDS	35.0%
ACGAATCTCAACGTAAAACT+CGG	-	chr2.3:5119588-5119607	MS.gene78374:CDS	35.0%
ACGTAACCTAATCTCTTCAA+TGG	+	chr2.3:5119932-5119951	None:intergenic	35.0%
ATATTAGGCAAAGGAGCAAT+GGG	-	chr2.3:5119107-5119126	MS.gene78374:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	5119044	5120189	5119044	ID=MS.gene78374
chr2.3	mRNA	5119044	5120189	5119044	ID=MS.gene78374.t1;Parent=MS.gene78374
chr2.3	exon	5119044	5120189	5119044	ID=MS.gene78374.t1.exon1;Parent=MS.gene78374.t1
chr2.3	CDS	5119044	5120189	5119044	ID=cds.MS.gene78374.t1;Parent=MS.gene78374.t1

Gene Sequence

>MS.gene78374

ATGGATTCACCAACATCACCTAGTACACAAGACCTTAACCTCAACAACCTCAAACCACTCAAAATATTAGGCAAAGGAGCAATGGGAACCGTTTTCCTCATCCAACAAAACAACAACGTTAACACCACCATGGCACTCAAAGTAGTTGACAAATCCTCCACACACGACGCCGAACGTCGAGCACGTTGGGAGATCGACGTCTTATCCACTTTATCACATCCATTCCTCCCATCCATCCTGGGCAACTTTGAAACGGCTCAGTTAATTGGCTGGGCCGTTCCATATTGCTCAGGAGGTGATCTGAATGCGCTCCGTTACCAACAAACGGACCGTGTCTTCTCAACAACAGCAATCCGTTTCTACATAGCAGAGATTCTCTGCGCTCTTGAACATCTTCATACCATGGGCATAGCTTATCGTGACCTTAAACCAGAAAACGTTCTTATTCAACAATCTGGCCACGTCACGTTAACTGATTTCGATCTCTCACGTAAACTTTCACACAAAACGGTTAGAACTTTAACCGTCGAAGATAGCAGAATCCACGAATCTCAACGTAAAACTCGGCGATGGAGAATTCCACTCAATCGGCGAATTAGTCCGGTGAGTCGTCGTGGATTGAGTTTCTCCGACGGTGAAAAGTCTAACTCGTTTGTTGGCACAGCAGAGTACGTCGCCCCGGAAGTAATCCGCGGCGACGGACATGAATTCGCAGTTGATTTTTGGGCTCTTGGAATTTTAAGCTACGAGATGTTGTATGGGAAAACACCGTTTAAGGGGAAGAATAAGAAAGAAACTTTTTCAAACGTGCTTTTCAAGAAGCTTGAATTTGTTGGAAGGAAAACAGCGTTAACGGATTTGATCGAACGGTTGTTAGAGAAGGATCCATTGAAGAGATTAGGTTACGTTGGAGGAGCTAATGAAATTAAGGAGCATGAGTTTTTTAGAGGGGTAAAATGGGAAATGTTGACGGAGGTTGTACGGCCACCGTTTATTCCGTCGAGAGATGACGGTTATTTGACGGCGGAGGAATTCGGTGGAGTGGATATAAGTGATTATTTCGATAAGCTGAAATTGCCGTCGTCGTCGCCGTTACGGTCACCGTCGTCTGAGTTTGAGGATAGCGTTTCATTTGATGAGTTCTGA

Protein sequence

>MS.gene78374.t1

MDSPTSPSTQDLNLNNLKPLKILGKGAMGTVFLIQQNNNVNTTMALKVVDKSSTHDAERRARWEIDVLSTLSHPFLPSILGNFETAQLIGWAVPYCSGGDLNALRYQQTDRVFSTTAIRFYIAEILCALEHLHTMGIAYRDLKPENVLIQQSGHVTLTDFDLSRKLSHKTVRTLTVEDSRIHESQRKTRRWRIPLNRRISPVSRRGLSFSDGEKSNSFVGTAEYVAPEVIRGDGHEFAVDFWALGILSYEMLYGKTPFKGKNKKETFSNVLFKKLEFVGRKTALTDLIERLLEKDPLKRLGYVGGANEIKEHEFFRGVKWEMLTEVVRPPFIPSRDDGYLTAEEFGGVDISDYFDKLKLPSSSPLRSPSSEFEDSVSFDEF