Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78412.t1 | XP_003597387.1 | 97.3 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 1.50E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78412.t1 | Q94DG6 | 53.6 | 278 | 122 | 1 | 65 | 335 | 75 | 352 | 1.1e-77 | 291.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78412.t1 | Q9AWG7 | 97.3 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 1.1e-150 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052084 | MS.gene78412 | 0.98471 | 2.33E-161 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78412.t1 | MTR_2g097580 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| MS.gene78412.t1 | MTR_3g058630 | 57.980 | 307 | 115 | 5 | 41 | 335 | 45 | 349 | 3.31e-129 | 373 |
| MS.gene78412.t1 | MTR_4g083570 | 21.910 | 356 | 249 | 12 | 1 | 334 | 1 | 349 | 3.56e-13 | 70.1 |
| MS.gene78412.t1 | MTR_3g081580 | 24.351 | 308 | 199 | 10 | 31 | 310 | 31 | 332 | 5.12e-12 | 66.6 |
| MS.gene78412.t1 | MTR_3g081690 | 24.920 | 313 | 194 | 11 | 43 | 320 | 33 | 339 | 6.11e-12 | 66.2 |
| MS.gene78412.t1 | MTR_3g081690 | 24.920 | 313 | 194 | 11 | 43 | 320 | 56 | 362 | 8.02e-12 | 65.9 |
| MS.gene78412.t1 | MTR_3g082050 | 23.913 | 322 | 209 | 11 | 43 | 334 | 33 | 348 | 1.31e-11 | 65.1 |
| MS.gene78412.t1 | MTR_3g082050 | 23.913 | 322 | 209 | 11 | 43 | 334 | 56 | 371 | 1.63e-11 | 65.1 |
| MS.gene78412.t1 | MTR_3g082050 | 23.913 | 322 | 209 | 11 | 43 | 334 | 61 | 376 | 1.79e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78412.t1 | AT5G59520 | 58.974 | 351 | 125 | 5 | 3 | 335 | 4 | 353 | 4.36e-134 | 385 |
| MS.gene78412.t1 | AT1G55910 | 57.729 | 317 | 109 | 4 | 28 | 335 | 25 | 325 | 1.27e-132 | 381 |
| MS.gene78412.t1 | AT2G32270 | 24.633 | 341 | 225 | 12 | 11 | 334 | 13 | 338 | 1.48e-15 | 77.0 |
| MS.gene78412.t1 | AT2G04032 | 26.075 | 372 | 229 | 16 | 1 | 334 | 1 | 364 | 6.95e-15 | 75.1 |
| MS.gene78412.t1 | AT4G19690 | 22.159 | 352 | 250 | 10 | 1 | 334 | 1 | 346 | 2.02e-14 | 73.6 |
| MS.gene78412.t1 | AT4G19680 | 23.269 | 361 | 238 | 11 | 1 | 334 | 1 | 349 | 2.50e-13 | 70.5 |
| MS.gene78412.t1 | AT1G31260 | 21.067 | 356 | 248 | 8 | 9 | 334 | 11 | 363 | 4.56e-13 | 69.7 |
| MS.gene78412.t1 | AT3G12750 | 22.507 | 351 | 229 | 12 | 12 | 334 | 19 | 354 | 5.29e-12 | 66.6 |
Find 71 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCTGCTGTTGTTATTAA+TGG | 0.165665 | 2.3:-5467051 | None:intergenic |
| GGCATCGCCGTTGGAATTTC+AGG | 0.231489 | 2.3:+5466287 | MS.gene78412:CDS |
| GCCTTCATGTTGGCTTGTTC+TGG | 0.231810 | 2.3:+5466041 | MS.gene78412:CDS |
| AATAAGGAACGTTGACTTTA+GGG | 0.232919 | 2.3:-5465709 | None:intergenic |
| GTTTGGTCCTTGTTAAAATA+TGG | 0.282576 | 2.3:+5465829 | MS.gene78412:CDS |
| AAATAAGGAACGTTGACTTT+AGG | 0.295702 | 2.3:-5465710 | None:intergenic |
| TAATTGCAGTTGTCATGATT+TGG | 0.312381 | 2.3:+5467310 | MS.gene78412:CDS |
| CCCTTCTGTTGTTGCGTCGA+TGG | 0.338990 | 2.3:-5467124 | None:intergenic |
| GTTTCGACACTCCATGGTTT+AGG | 0.340853 | 2.3:+5467259 | MS.gene78412:CDS |
| AGCCCAATTGGCGTAGGAAT+TGG | 0.345732 | 2.3:+5467096 | MS.gene78412:CDS |
| ATTCCAATTCCTACGCCAAT+TGG | 0.349639 | 2.3:-5467099 | None:intergenic |
| AAATTTACGTTCGAGGAGTT+TGG | 0.351394 | 2.3:+5465812 | MS.gene78412:CDS |
| TCGTTCCAACGGAAATAATA+AGG | 0.363463 | 2.3:-5465897 | None:intergenic |
| GAACGTTGACTTTAGGGCTT+TGG | 0.365709 | 2.3:-5465703 | None:intergenic |
| AGACTAAGAGACACAAAATA+AGG | 0.372662 | 2.3:-5465725 | None:intergenic |
| CTATTAGGGACACAATTTGC+TGG | 0.389492 | 2.3:+5465930 | MS.gene78412:CDS |
| AATTGCAGTTGTCATGATTT+GGG | 0.398612 | 2.3:+5467311 | MS.gene78412:CDS |
| ATCAATCATTTAATCTCTAA+AGG | 0.405525 | 2.3:+5467213 | MS.gene78412:CDS |
| TTCATGAAGACTACTAATCT+TGG | 0.413670 | 2.3:+5466215 | MS.gene78412:CDS |
| TTCAATTCAATCAAAGCTCA+TGG | 0.442939 | 2.3:+5465753 | MS.gene78412:CDS |
| CAAGCCAACATGAAGGCAAA+AGG | 0.443986 | 2.3:-5466035 | None:intergenic |
| TTGGATGTATGCAATATCAA+TGG | 0.451469 | 2.3:+5467158 | MS.gene78412:CDS |
| CGAACGTAAATTTATGTTGT+CGG | 0.451852 | 2.3:-5465802 | None:intergenic |
| CGTTGACTTTAGGGCTTTGG+AGG | 0.455192 | 2.3:-5465700 | None:intergenic |
| TGTCTCCTTATTATTTCCGT+TGG | 0.456903 | 2.3:+5465892 | MS.gene78412:CDS |
| TTTGCTATCTCAAGCCCAAT+TGG | 0.457379 | 2.3:+5467084 | MS.gene78412:CDS |
| AAGAAGCATGGAGGAATTTG+TGG | 0.466479 | 2.3:+5466956 | MS.gene78412:CDS |
| TTCCAATTCCTACGCCAATT+GGG | 0.466756 | 2.3:-5467098 | None:intergenic |
| AGCTTTGATTGAATTGAAGA+AGG | 0.475831 | 2.3:-5465748 | None:intergenic |
| GAGAACACCTCAAGAAGAAG+AGG | 0.481872 | 2.3:+5466154 | MS.gene78412:CDS |
| ACAACATAAATTTACGTTCG+AGG | 0.488053 | 2.3:+5465805 | MS.gene78412:CDS |
| AATTTATGTTGTCGGAGTCA+TGG | 0.509180 | 2.3:-5465794 | None:intergenic |
| GATATTTGCTGCAATAGCAA+TGG | 0.517861 | 2.3:+5466996 | MS.gene78412:CDS |
| ATATTTGCTGCAATAGCAAT+GGG | 0.519706 | 2.3:+5466997 | MS.gene78412:CDS |
| TGGATGTATGCAATATCAAT+GGG | 0.524253 | 2.3:+5467159 | MS.gene78412:CDS |
| GTCGTTCCCTCTTCTTCTTG+AGG | 0.530005 | 2.3:-5466161 | None:intergenic |
| AAATTAATGATCAGGTACTA+AGG | 0.530087 | 2.3:+5466933 | MS.gene78412:intron |
| CAGAAGGGAGAACAGCGGAT+TGG | 0.535719 | 2.3:+5467139 | MS.gene78412:CDS |
| AACCATGTTTGGTGATTGTG+TGG | 0.549871 | 2.3:+5466073 | MS.gene78412:CDS |
| GCCATCGACGCAACAACAGA+AGG | 0.551024 | 2.3:+5467123 | MS.gene78412:CDS |
| GCTAAAGTTGAGGAACTTGA+AGG | 0.551786 | 2.3:+5466128 | MS.gene78412:CDS |
| GCTCTCATCCATCGCCAACT+CGG | 0.559618 | 2.3:-5466183 | None:intergenic |
| TAAACCATGGAGTGTCGAAA+CGG | 0.560955 | 2.3:-5467257 | None:intergenic |
| AAGCCAACATGAAGGCAAAA+GGG | 0.565308 | 2.3:-5466034 | None:intergenic |
| GGGAACGACCGAGTTGGCGA+TGG | 0.565946 | 2.3:+5466175 | MS.gene78412:CDS |
| CACCACACAATCACCAAACA+TGG | 0.566132 | 2.3:-5466075 | None:intergenic |
| AGACCATTAATAACAACAGC+AGG | 0.566425 | 2.3:+5467048 | MS.gene78412:CDS |
| CATGTTTGGTGATTGTGTGG+TGG | 0.584077 | 2.3:+5466076 | MS.gene78412:CDS |
| AGAGCCGTTTCGACACTCCA+TGG | 0.586693 | 2.3:+5467253 | MS.gene78412:CDS |
| TCCAGAACAAGCCAACATGA+AGG | 0.595290 | 2.3:-5466042 | None:intergenic |
| AAGTTGAGGAACTTGAAGGA+GGG | 0.602436 | 2.3:+5466132 | MS.gene78412:CDS |
| TATGTTGTCGGAGTCATGGT+CGG | 0.603695 | 2.3:-5465790 | None:intergenic |
| TTAGGGACACAATTTGCTGG+TGG | 0.603967 | 2.3:+5465933 | MS.gene78412:CDS |
| TGTAACAAGTAATAATCAGA+GGG | 0.605818 | 2.3:+5466103 | MS.gene78412:CDS |
| AGAAGAGGGAACGACCGAGT+TGG | 0.611188 | 2.3:+5466169 | MS.gene78412:CDS |
| AAAGTTGAGGAACTTGAAGG+AGG | 0.613893 | 2.3:+5466131 | MS.gene78412:CDS |
| ATGTAACAAGTAATAATCAG+AGG | 0.621888 | 2.3:+5466102 | MS.gene78412:CDS |
| AGAACACCTCAAGAAGAAGA+GGG | 0.622606 | 2.3:+5466155 | MS.gene78412:CDS |
| TTATTATTTCCGTTGGAACG+AGG | 0.624370 | 2.3:+5465899 | MS.gene78412:CDS |
| CAGGTACTAAGGAAGAAGCA+TGG | 0.640699 | 2.3:+5466944 | MS.gene78412:intron |
| ATCTCAAGCCCAATTGGCGT+AGG | 0.640719 | 2.3:+5467090 | MS.gene78412:CDS |
| CCATCGACGCAACAACAGAA+GGG | 0.642467 | 2.3:+5467124 | MS.gene78412:CDS |
| TCAGAGGGAAGCTAAAGTTG+AGG | 0.644763 | 2.3:+5466118 | MS.gene78412:CDS |
| TCGAAACGGCTCTTCCTCTG+CGG | 0.648000 | 2.3:-5467243 | None:intergenic |
| ATATCAATGGGTATTGCTTG+TGG | 0.657971 | 2.3:+5467171 | MS.gene78412:CDS |
| GAAATAACCTGAAATTCCAA+CGG | 0.686017 | 2.3:-5466294 | None:intergenic |
| CTAAAGGCTTCAAACCGCAG+AGG | 0.686420 | 2.3:+5467229 | MS.gene78412:CDS |
| ACAGCAAGAAACCTAAACCA+TGG | 0.706576 | 2.3:-5467270 | None:intergenic |
| AATTCAATCAAAGCTCATGG+AGG | 0.725080 | 2.3:+5465756 | MS.gene78412:CDS |
| AACAACAGAAGGGAGAACAG+CGG | 0.747170 | 2.3:+5467134 | MS.gene78412:CDS |
| GTACTAAGGAAGAAGCATGG+AGG | 0.765390 | 2.3:+5466947 | MS.gene78412:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATACAAATTAATGATC+AGG | + | chr2.3:5466925-5466944 | MS.gene78412:intron | 15.0% |
| !!! | ATTTTAACTATTCGTATATA+TGG | - | chr2.3:5466550-5466569 | None:intergenic | 15.0% |
| !!! | TTTTAACTATTCGTATATAT+GGG | - | chr2.3:5466549-5466568 | None:intergenic | 15.0% |
| !! | ATCAATCATTTAATCTCTAA+AGG | + | chr2.3:5467213-5467232 | MS.gene78412:CDS | 20.0% |
| !!! | ATATGCATTTTCATATTGAA+AGG | - | chr2.3:5466848-5466867 | None:intergenic | 20.0% |
| !!! | ATTTTAAATAGCATCAAAGT+GGG | + | chr2.3:5466649-5466668 | MS.gene78412:intron | 20.0% |
| !!! | TATGCATTTTCATATTGAAA+GGG | - | chr2.3:5466847-5466866 | None:intergenic | 20.0% |
| !!! | TATTTTAAATAGCATCAAAG+TGG | + | chr2.3:5466648-5466667 | MS.gene78412:intron | 20.0% |
| !!! | TGATAGTCTTTTTCTTTTTT+CGG | + | chr2.3:5466345-5466364 | MS.gene78412:intron | 20.0% |
| !!! | TGTATATATGATGTGTTTTA+GGG | + | chr2.3:5466676-5466695 | MS.gene78412:intron | 20.0% |
| ! | AAATTAATGATCAGGTACTA+AGG | + | chr2.3:5466933-5466952 | MS.gene78412:intron | 25.0% |
| ! | AAGAAAAAGACTATCAAGAA+AGG | - | chr2.3:5466341-5466360 | None:intergenic | 25.0% |
| ! | ATGTAACAAGTAATAATCAG+AGG | + | chr2.3:5466102-5466121 | MS.gene78412:CDS | 25.0% |
| ! | GAAAATTTGATCTTCAACAT+TGG | - | chr2.3:5466398-5466417 | None:intergenic | 25.0% |
| ! | TGTAACAAGTAATAATCAGA+GGG | + | chr2.3:5466103-5466122 | MS.gene78412:CDS | 25.0% |
| !! | CTGTATATATGATGTGTTTT+AGG | + | chr2.3:5466675-5466694 | MS.gene78412:intron | 25.0% |
| !! | GATAGTCTTTTTCTTTTTTC+GGG | + | chr2.3:5466346-5466365 | MS.gene78412:intron | 25.0% |
| !!! | GTTGTTATTAATGGTCTTTT+TGG | - | chr2.3:5467045-5467064 | None:intergenic | 25.0% |
| !!! | TCAAACACCATATTTTAACA+AGG | - | chr2.3:5465839-5465858 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTCACTTTCTT+AGG | + | chr2.3:5465864-5465883 | MS.gene78412:CDS | 25.0% |
| AATTGCAGTTGTCATGATTT+GGG | + | chr2.3:5467311-5467330 | MS.gene78412:CDS | 30.0% | |
| ACAACATAAATTTACGTTCG+AGG | + | chr2.3:5465805-5465824 | MS.gene78412:CDS | 30.0% | |
| AGAAAGGATGAAATAAACGA+TGG | - | chr2.3:5466325-5466344 | None:intergenic | 30.0% | |
| AGACTAAGAGACACAAAATA+AGG | - | chr2.3:5465728-5465747 | None:intergenic | 30.0% | |
| CGAACGTAAATTTATGTTGT+CGG | - | chr2.3:5465805-5465824 | None:intergenic | 30.0% | |
| GAAATAACCTGAAATTCCAA+CGG | - | chr2.3:5466297-5466316 | None:intergenic | 30.0% | |
| GTTTGGTCCTTGTTAAAATA+TGG | + | chr2.3:5465829-5465848 | MS.gene78412:CDS | 30.0% | |
| TAATTGCAGTTGTCATGATT+TGG | + | chr2.3:5467310-5467329 | MS.gene78412:CDS | 30.0% | |
| TGACTGTTATGTTACTGTAT+TGG | + | chr2.3:5466699-5466718 | MS.gene78412:intron | 30.0% | |
| TGGATGTATGCAATATCAAT+GGG | + | chr2.3:5467159-5467178 | MS.gene78412:CDS | 30.0% | |
| TTATGCATTCTTCTCTTTCT+TGG | + | chr2.3:5466593-5466612 | MS.gene78412:intron | 30.0% | |
| TTCAATTCAATCAAAGCTCA+TGG | + | chr2.3:5465753-5465772 | MS.gene78412:CDS | 30.0% | |
| TTCATGAAGACTACTAATCT+TGG | + | chr2.3:5466215-5466234 | MS.gene78412:CDS | 30.0% | |
| TTGGATGTATGCAATATCAA+TGG | + | chr2.3:5467158-5467177 | MS.gene78412:CDS | 30.0% | |
| ! | AACGAGGTTTTTCTTCTATT+AGG | + | chr2.3:5465915-5465934 | MS.gene78412:CDS | 30.0% |
| ! | AAGTTTGGCATGTGATTTTT+AGG | + | chr2.3:5466799-5466818 | MS.gene78412:intron | 30.0% |
| ! | ACGAGGTTTTTCTTCTATTA+GGG | + | chr2.3:5465916-5465935 | MS.gene78412:CDS | 30.0% |
| ! | AGCTTTGATTGAATTGAAGA+AGG | - | chr2.3:5465751-5465770 | None:intergenic | 30.0% |
| ! | AGTGTTAAAGTATCAAACCT+AGG | + | chr2.3:5466369-5466388 | MS.gene78412:intron | 30.0% |
| ! | ATATTTGCTGCAATAGCAAT+GGG | + | chr2.3:5466997-5467016 | MS.gene78412:CDS | 30.0% |
| ! | CATTTTCATATTGAAAGGGA+TGG | - | chr2.3:5466843-5466862 | None:intergenic | 30.0% |
| ! | GGATATCTTTTAACCATGTT+TGG | + | chr2.3:5466062-5466081 | MS.gene78412:CDS | 30.0% |
| ! | TATCCTGCTGTTGTTATTAA+TGG | - | chr2.3:5467054-5467073 | None:intergenic | 30.0% |
| ! | TGTTTTCATTCGGTTTTTGA+AGG | + | chr2.3:5466266-5466285 | MS.gene78412:CDS | 30.0% |
| !! | AAATAAGGAACGTTGACTTT+AGG | - | chr2.3:5465713-5465732 | None:intergenic | 30.0% |
| !! | AATAAGGAACGTTGACTTTA+GGG | - | chr2.3:5465712-5465731 | None:intergenic | 30.0% |
| !! | TTTGTTTTCACTTTCTTAGG+TGG | + | chr2.3:5465867-5465886 | MS.gene78412:CDS | 30.0% |
| !!! | TCTTGCACTTTGTTTTCATT+CGG | + | chr2.3:5466256-5466275 | MS.gene78412:CDS | 30.0% |
| AAATTTACGTTCGAGGAGTT+TGG | + | chr2.3:5465812-5465831 | MS.gene78412:CDS | 35.0% | |
| AATTCAATCAAAGCTCATGG+AGG | + | chr2.3:5465756-5465775 | MS.gene78412:CDS | 35.0% | |
| AATTTATGTTGTCGGAGTCA+TGG | - | chr2.3:5465797-5465816 | None:intergenic | 35.0% | |
| AGACCATTAATAACAACAGC+AGG | + | chr2.3:5467048-5467067 | MS.gene78412:CDS | 35.0% | |
| AGACTACCAAGAAATGATGT+TGG | - | chr2.3:5466442-5466461 | None:intergenic | 35.0% | |
| TCGTTCCAACGGAAATAATA+AGG | - | chr2.3:5465900-5465919 | None:intergenic | 35.0% | |
| TGAAGACCAACATCATTTCT+TGG | + | chr2.3:5466433-5466452 | MS.gene78412:intron | 35.0% | |
| TGTCTCCTTATTATTTCCGT+TGG | + | chr2.3:5465892-5465911 | MS.gene78412:CDS | 35.0% | |
| TTATTATTTCCGTTGGAACG+AGG | + | chr2.3:5465899-5465918 | MS.gene78412:CDS | 35.0% | |
| ! | ATATCAATGGGTATTGCTTG+TGG | + | chr2.3:5467171-5467190 | MS.gene78412:CDS | 35.0% |
| ! | GATATTTGCTGCAATAGCAA+TGG | + | chr2.3:5466996-5467015 | MS.gene78412:CDS | 35.0% |
| !! | ATTGAAAGGGATGGACTATA+TGG | - | chr2.3:5466834-5466853 | None:intergenic | 35.0% |
| AAAGTTGAGGAACTTGAAGG+AGG | + | chr2.3:5466131-5466150 | MS.gene78412:CDS | 40.0% | |
| AAGCCAACATGAAGGCAAAA+GGG | - | chr2.3:5466037-5466056 | None:intergenic | 40.0% | |
| AAGTTGAGGAACTTGAAGGA+GGG | + | chr2.3:5466132-5466151 | MS.gene78412:CDS | 40.0% | |
| ACAGCAAGAAACCTAAACCA+TGG | - | chr2.3:5467273-5467292 | None:intergenic | 40.0% | |
| AGAACACCTCAAGAAGAAGA+GGG | + | chr2.3:5466155-5466174 | MS.gene78412:CDS | 40.0% | |
| ATTCCAATTCCTACGCCAAT+TGG | - | chr2.3:5467102-5467121 | None:intergenic | 40.0% | |
| CTATTAGGGACACAATTTGC+TGG | + | chr2.3:5465930-5465949 | MS.gene78412:CDS | 40.0% | |
| GAAGAAAAACCTCGTTCCAA+CGG | - | chr2.3:5465911-5465930 | None:intergenic | 40.0% | |
| GCTAAAGTTGAGGAACTTGA+AGG | + | chr2.3:5466128-5466147 | MS.gene78412:CDS | 40.0% | |
| GTGACTTTGCATCTCAAGTT+TGG | + | chr2.3:5466735-5466754 | MS.gene78412:intron | 40.0% | |
| TTCCAATTCCTACGCCAATT+GGG | - | chr2.3:5467101-5467120 | None:intergenic | 40.0% | |
| ! | AACCATGTTTGGTGATTGTG+TGG | + | chr2.3:5466073-5466092 | MS.gene78412:CDS | 40.0% |
| ! | AAGAAGCATGGAGGAATTTG+TGG | + | chr2.3:5466956-5466975 | MS.gene78412:CDS | 40.0% |
| ! | ATCTTCAACATTGGTGACCT+AGG | - | chr2.3:5466389-5466408 | None:intergenic | 40.0% |
| ! | GGCAAAAGGGTAAGTTTTCT+TGG | - | chr2.3:5466024-5466043 | None:intergenic | 40.0% |
| ! | TTACCCTTTTGCCTTCATGT+TGG | + | chr2.3:5466031-5466050 | MS.gene78412:CDS | 40.0% |
| ! | TTTGCTATCTCAAGCCCAAT+TGG | + | chr2.3:5467084-5467103 | MS.gene78412:CDS | 40.0% |
| ! | TTTGCTGGTGGAGTTTTTCT+TGG | + | chr2.3:5465945-5465964 | MS.gene78412:CDS | 40.0% |
| !! | AGGTTTCTTGCTGTGCTTTT+TGG | + | chr2.3:5467279-5467298 | MS.gene78412:CDS | 40.0% |
| !! | TAAACCATGGAGTGTCGAAA+CGG | - | chr2.3:5467260-5467279 | None:intergenic | 40.0% |
| AACAACAGAAGGGAGAACAG+CGG | + | chr2.3:5467134-5467153 | MS.gene78412:CDS | 45.0% | |
| CAAGCCAACATGAAGGCAAA+AGG | - | chr2.3:5466038-5466057 | None:intergenic | 45.0% | |
| CACCACACAATCACCAAACA+TGG | - | chr2.3:5466078-5466097 | None:intergenic | 45.0% | |
| CAGGTACTAAGGAAGAAGCA+TGG | + | chr2.3:5466944-5466963 | MS.gene78412:intron | 45.0% | |
| GAGAACACCTCAAGAAGAAG+AGG | + | chr2.3:5466154-5466173 | MS.gene78412:CDS | 45.0% | |
| GTTTCGACACTCCATGGTTT+AGG | + | chr2.3:5467259-5467278 | MS.gene78412:CDS | 45.0% | |
| TATGTTGTCGGAGTCATGGT+CGG | - | chr2.3:5465793-5465812 | None:intergenic | 45.0% | |
| TCAGAGGGAAGCTAAAGTTG+AGG | + | chr2.3:5466118-5466137 | MS.gene78412:CDS | 45.0% | |
| TCCAGAACAAGCCAACATGA+AGG | - | chr2.3:5466045-5466064 | None:intergenic | 45.0% | |
| ! | CATGTTTGGTGATTGTGTGG+TGG | + | chr2.3:5466076-5466095 | MS.gene78412:CDS | 45.0% |
| ! | GTACTAAGGAAGAAGCATGG+AGG | + | chr2.3:5466947-5466966 | MS.gene78412:CDS | 45.0% |
| !! | GAACGTTGACTTTAGGGCTT+TGG | - | chr2.3:5465706-5465725 | None:intergenic | 45.0% |
| !! | TTAGGGACACAATTTGCTGG+TGG | + | chr2.3:5465933-5465952 | MS.gene78412:CDS | 45.0% |
| AGCCCAATTGGCGTAGGAAT+TGG | + | chr2.3:5467096-5467115 | MS.gene78412:CDS | 50.0% | |
| ATCTCAAGCCCAATTGGCGT+AGG | + | chr2.3:5467090-5467109 | MS.gene78412:CDS | 50.0% | |
| CCATCGACGCAACAACAGAA+GGG | + | chr2.3:5467124-5467143 | MS.gene78412:CDS | 50.0% | |
| CTAAAGGCTTCAAACCGCAG+AGG | + | chr2.3:5467229-5467248 | MS.gene78412:CDS | 50.0% | |
| GTCGTTCCCTCTTCTTCTTG+AGG | - | chr2.3:5466164-5466183 | None:intergenic | 50.0% | |
| !! | CGTTGACTTTAGGGCTTTGG+AGG | - | chr2.3:5465703-5465722 | None:intergenic | 50.0% |
| !! | GCCTTCATGTTGGCTTGTTC+TGG | + | chr2.3:5466041-5466060 | MS.gene78412:CDS | 50.0% |
| !!! | GTTTTTGAAGGCATCGCCGT+TGG | + | chr2.3:5466278-5466297 | MS.gene78412:CDS | 50.0% |
| AGAAGAGGGAACGACCGAGT+TGG | + | chr2.3:5466169-5466188 | MS.gene78412:CDS | 55.0% | |
| AGAGCCGTTTCGACACTCCA+TGG | + | chr2.3:5467253-5467272 | MS.gene78412:CDS | 55.0% | |
| CAGAAGGGAGAACAGCGGAT+TGG | + | chr2.3:5467139-5467158 | MS.gene78412:CDS | 55.0% | |
| CCCTTCTGTTGTTGCGTCGA+TGG | - | chr2.3:5467127-5467146 | None:intergenic | 55.0% | |
| GCCATCGACGCAACAACAGA+AGG | + | chr2.3:5467123-5467142 | MS.gene78412:CDS | 55.0% | |
| GCTCTCATCCATCGCCAACT+CGG | - | chr2.3:5466186-5466205 | None:intergenic | 55.0% | |
| GGCATCGCCGTTGGAATTTC+AGG | + | chr2.3:5466287-5466306 | MS.gene78412:CDS | 55.0% | |
| TCGAAACGGCTCTTCCTCTG+CGG | - | chr2.3:5467246-5467265 | None:intergenic | 55.0% | |
| ! | GGGAACGACCGAGTTGGCGA+TGG | + | chr2.3:5466175-5466194 | MS.gene78412:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 5465693 | 5467338 | 5465693 | ID=MS.gene78412 |
| chr2.3 | mRNA | 5465693 | 5467338 | 5465693 | ID=MS.gene78412.t1;Parent=MS.gene78412 |
| chr2.3 | exon | 5465693 | 5466308 | 5465693 | ID=MS.gene78412.t1.exon1;Parent=MS.gene78412.t1 |
| chr2.3 | CDS | 5465693 | 5466308 | 5465693 | ID=cds.MS.gene78412.t1;Parent=MS.gene78412.t1 |
| chr2.3 | exon | 5466947 | 5467338 | 5466947 | ID=MS.gene78412.t1.exon2;Parent=MS.gene78412.t1 |
| chr2.3 | CDS | 5466947 | 5467338 | 5466947 | ID=cds.MS.gene78412.t1;Parent=MS.gene78412.t1 |
| Gene Sequence |
| Protein sequence |