Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78476.t1 | GAU11163.1 | 98.3 | 178 | 3 | 0 | 1 | 178 | 356 | 533 | 2.60E-96 | 361.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78476.t1 | A3KPF2 | 77.8 | 171 | 30 | 2 | 1 | 171 | 366 | 528 | 8.4e-72 | 271.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78476.t1 | A0A2Z6LGD2 | 98.3 | 178 | 3 | 0 | 1 | 178 | 356 | 533 | 1.9e-96 | 361.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049983 | MS.gene78476 | -0.800152 | 1.65E-48 | -1.69E-46 |
| MS.gene058279 | MS.gene78476 | -0.803071 | 4.15E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78476.t1 | MTR_4g119900 | 97.191 | 178 | 5 | 0 | 1 | 178 | 357 | 534 | 1.74e-127 | 369 |
| MS.gene78476.t1 | MTR_4g119900 | 93.258 | 178 | 5 | 1 | 1 | 178 | 357 | 527 | 3.27e-119 | 347 |
| MS.gene78476.t1 | MTR_2g436780 | 84.270 | 178 | 27 | 1 | 1 | 177 | 359 | 536 | 3.97e-109 | 322 |
| MS.gene78476.t1 | MTR_2g436780 | 83.708 | 178 | 25 | 2 | 1 | 177 | 359 | 533 | 1.29e-105 | 313 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78476.t1 | AT5G49020 | 77.778 | 171 | 30 | 2 | 1 | 171 | 364 | 526 | 5.56e-94 | 283 |
| MS.gene78476.t1 | AT5G49020 | 77.778 | 171 | 30 | 2 | 1 | 171 | 366 | 528 | 6.67e-94 | 282 |
| MS.gene78476.t1 | AT3G06930 | 82.550 | 149 | 24 | 1 | 1 | 147 | 363 | 511 | 7.79e-88 | 267 |
| MS.gene78476.t1 | AT3G06930 | 81.333 | 150 | 25 | 1 | 1 | 147 | 363 | 512 | 2.65e-86 | 263 |
Find 52 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGTTGTTGCATTATTTC+TGG | 0.193341 | 8.4:+12057437 | None:intergenic |
| TGCCCTGCCATGACATAAAT+TGG | 0.284559 | 8.4:+12058461 | None:intergenic |
| GTGGTTGAGTTTGCTGATCT+TGG | 0.287380 | 8.4:+12058161 | None:intergenic |
| GTTTGCTGATCTTGGGCTAA+TGG | 0.295309 | 8.4:+12058169 | None:intergenic |
| TCAATCTGAGCACATGAATT+AGG | 0.321663 | 8.4:+12057413 | None:intergenic |
| GTTCTTCTAATTCCTGAGAT+TGG | 0.325220 | 8.4:+12057459 | None:intergenic |
| ACAATATATTTAACATTGTC+TGG | 0.358148 | 8.4:-12058389 | MS.gene78476:intron |
| TGGTTGAGACATTCTATAGT+AGG | 0.366120 | 8.4:+12058201 | None:intergenic |
| GAGAGAGAACACAGCGTAAC+TGG | 0.376141 | 8.4:+12058486 | None:intergenic |
| TGGTTGAGTTTGCTGATCTT+GGG | 0.412074 | 8.4:+12058162 | None:intergenic |
| ATGGCAGGGCAGGAAATTAC+CGG | 0.442895 | 8.4:-12058449 | MS.gene78476:CDS |
| TCTGTGGGCACCAGAGTACA+TGG | 0.444669 | 8.4:-12058705 | MS.gene78476:CDS |
| CAATGGGTTGTGGGTGAACC+AGG | 0.458912 | 8.4:+12058512 | None:intergenic |
| CAGCCAATTTATGTCATGGC+AGG | 0.478417 | 8.4:-12058464 | MS.gene78476:CDS |
| CTGAGATTCGTTGCCTCTGT+GGG | 0.478950 | 8.4:-12058720 | MS.gene78476:CDS |
| AACTGGTACCAATGGGTTGT+GGG | 0.487071 | 8.4:+12058503 | None:intergenic |
| TAACTGGTACCAATGGGTTG+TGG | 0.500539 | 8.4:+12058502 | None:intergenic |
| AGGTGGCTTACCACTGCTCC+TGG | 0.500792 | 8.4:-12058530 | MS.gene78476:CDS |
| TGGTTTGATGTATTATTCAA+TGG | 0.507455 | 8.4:-12058672 | MS.gene78476:CDS |
| AATTTGCATTAGCTAAAATG+TGG | 0.507483 | 8.4:-12058288 | MS.gene78476:intron |
| GGATATACATATCCAATCTC+AGG | 0.507787 | 8.4:-12057471 | MS.gene78476:CDS |
| ATTTGCATTAGCTAAAATGT+GGG | 0.508569 | 8.4:-12058287 | MS.gene78476:intron |
| GGTTGAGACATTCTATAGTA+GGG | 0.509591 | 8.4:+12058202 | None:intergenic |
| CTCTCAGCCAATTTATGTCA+TGG | 0.512314 | 8.4:-12058468 | MS.gene78476:CDS |
| CACAGCGTAACTGGTACCAA+TGG | 0.512966 | 8.4:+12058495 | None:intergenic |
| TTAGCTAAAATGTGGGGTCC+TGG | 0.515230 | 8.4:-12058280 | MS.gene78476:intron |
| TTGATGTATTATTCAATGGA+AGG | 0.517055 | 8.4:-12058668 | MS.gene78476:intron |
| TGTATAACTCTGTGCATTGT+GGG | 0.532737 | 8.4:+12058409 | None:intergenic |
| AATACCTGTGTTTGTACAAG+TGG | 0.541212 | 8.4:+12058142 | None:intergenic |
| AATTTATGTCATGGCAGGGC+AGG | 0.545671 | 8.4:-12058459 | MS.gene78476:CDS |
| GGCAATCAAATGAAGCCTGC+CGG | 0.552822 | 8.4:+12058430 | None:intergenic |
| ACAGCGTAACTGGTACCAAT+GGG | 0.557115 | 8.4:+12058496 | None:intergenic |
| ACATGCTAACCCATGTACTC+TGG | 0.557433 | 8.4:+12058695 | None:intergenic |
| ATCCCTCCTTGTTCAGCACC+AGG | 0.558755 | 8.4:+12058262 | None:intergenic |
| CAGGGCAGGAAATTACCGGC+AGG | 0.563347 | 8.4:-12058445 | MS.gene78476:CDS |
| CTGGTTCACCCACAACCCAT+TGG | 0.575343 | 8.4:-12058511 | MS.gene78476:CDS |
| TGGGGTCCTGGTGCTGAACA+AGG | 0.580583 | 8.4:-12058268 | MS.gene78476:CDS |
| GTCCTGGTGCTGAACAAGGA+GGG | 0.581683 | 8.4:-12058264 | MS.gene78476:CDS |
| GAGTACATGGGTTAGCATGT+TGG | 0.589662 | 8.4:-12058692 | MS.gene78476:CDS |
| TGGGCTAATGGATAAACTTG+TGG | 0.598432 | 8.4:+12058181 | None:intergenic |
| TTTACAGTACTGTGCAAAGG+TGG | 0.605128 | 8.4:-12058547 | MS.gene78476:intron |
| TCTGAGATTCGTTGCCTCTG+TGG | 0.608370 | 8.4:-12058721 | MS.gene78476:CDS |
| TTGTATAACTCTGTGCATTG+TGG | 0.608638 | 8.4:+12058408 | None:intergenic |
| AGCCAATTTATGTCATGGCA+GGG | 0.612618 | 8.4:-12058463 | MS.gene78476:CDS |
| TGTGGGTGAACCAGGAGCAG+TGG | 0.614255 | 8.4:+12058520 | None:intergenic |
| TCAACCACTTGTACAAACAC+AGG | 0.634432 | 8.4:-12058146 | MS.gene78476:intron |
| AAATTTACAGTACTGTGCAA+AGG | 0.643039 | 8.4:-12058550 | MS.gene78476:intron |
| GGTCCTGGTGCTGAACAAGG+AGG | 0.649183 | 8.4:-12058265 | MS.gene78476:CDS |
| TTTGCATTAGCTAAAATGTG+GGG | 0.656381 | 8.4:-12058286 | MS.gene78476:intron |
| CTGTGGGCACCAGAGTACAT+GGG | 0.665289 | 8.4:-12058704 | MS.gene78476:CDS |
| ACAGAGGCAACGAATCTCAG+AGG | 0.711441 | 8.4:+12058723 | None:intergenic |
| ATGTACTCTGGTGCCCACAG+AGG | 0.744859 | 8.4:+12058707 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAAAATAAATCTAATGA+TGG | + | chr8.4:12057506-12057525 | None:intergenic | 10.0% |
| !!! | TCATTTAACATTTTTTAAAA+AGG | + | chr8.4:12058807-12058826 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTCTTTTCATTAT+TGG | - | chr8.4:12058871-12058890 | MS.gene78476:intron | 10.0% |
| !!! | ACTTATTGTATTTTTTTTTG+TGG | - | chr8.4:12057532-12057551 | MS.gene78476:intron | 15.0% |
| !! | ACAATATATTTAACATTGTC+TGG | - | chr8.4:12058167-12058186 | MS.gene78476:CDS | 20.0% |
| !!! | TAACAAGTTTTTATTCAACT+AGG | - | chr8.4:12057941-12057960 | MS.gene78476:intron | 20.0% |
| !!! | TGATGATCATTGTATTTTTT+TGG | - | chr8.4:12057565-12057584 | MS.gene78476:intron | 20.0% |
| ! | AAAGTAGAACTTGAAACTAA+GGG | - | chr8.4:12058489-12058508 | MS.gene78476:CDS | 25.0% |
| ! | AATTTGCATTAGCTAAAATG+TGG | - | chr8.4:12058268-12058287 | MS.gene78476:CDS | 25.0% |
| ! | AGACTTTATTACTAATGAAG+AGG | + | chr8.4:12057922-12057941 | None:intergenic | 25.0% |
| ! | ATTTGCATTAGCTAAAATGT+GGG | - | chr8.4:12058269-12058288 | MS.gene78476:CDS | 25.0% |
| ! | GTATATCCTGTAAAAGTTAA+GGG | + | chr8.4:12059073-12059092 | None:intergenic | 25.0% |
| ! | TATATTTAACATTGTCTGGT+TGG | - | chr8.4:12058171-12058190 | MS.gene78476:CDS | 25.0% |
| ! | TGGTTTGATGTATTATTCAA+TGG | - | chr8.4:12057884-12057903 | MS.gene78476:intron | 25.0% |
| ! | TGTATATCCTGTAAAAGTTA+AGG | + | chr8.4:12059074-12059093 | None:intergenic | 25.0% |
| ! | TTGATGTATTATTCAATGGA+AGG | - | chr8.4:12057888-12057907 | MS.gene78476:intron | 25.0% |
| !! | ATCATTATTGAGTTGTTCTT+TGG | - | chr8.4:12057599-12057618 | MS.gene78476:intron | 25.0% |
| !! | TTCTTTTCATTATTGGACAA+TGG | - | chr8.4:12058878-12058897 | MS.gene78476:intron | 25.0% |
| !! | TTTATTCCTGTATTTTACGT+AGG | - | chr8.4:12057430-12057449 | MS.gene78476:CDS | 25.0% |
| !!! | AAAAAGCCATCTTTTATTTC+TGG | - | chr8.4:12057649-12057668 | MS.gene78476:intron | 25.0% |
| !!! | ATCATTGTATTTTTTTGGAC+TGG | - | chr8.4:12057570-12057589 | MS.gene78476:intron | 25.0% |
| !!! | TTCTTAACGAACGTATTTTT+TGG | - | chr8.4:12058567-12058586 | MS.gene78476:intron | 25.0% |
| AAATGACCTACGTAAAATAC+AGG | + | chr8.4:12057439-12057458 | None:intergenic | 30.0% | |
| AAATTTACAGTACTGTGCAA+AGG | - | chr8.4:12058006-12058025 | MS.gene78476:intron | 30.0% | |
| AAGTGATCAAAATTGGGAAT+AGG | - | chr8.4:12058774-12058793 | MS.gene78476:intron | 30.0% | |
| ACAATAGACCATTTGTACAA+AGG | + | chr8.4:12057687-12057706 | None:intergenic | 30.0% | |
| ATATCGTTCCTTTGTACAAA+TGG | - | chr8.4:12057676-12057695 | MS.gene78476:intron | 30.0% | |
| ATTTGGAAGATGAAATTCAG+TGG | - | chr8.4:12058515-12058534 | MS.gene78476:CDS | 30.0% | |
| CAAAGTAGAACTTGAAACTA+AGG | - | chr8.4:12058488-12058507 | MS.gene78476:CDS | 30.0% | |
| CTGACTAAGTGATCAAAATT+GGG | - | chr8.4:12058768-12058787 | MS.gene78476:intron | 30.0% | |
| CTTGAAACTAAGGGAAAATT+TGG | - | chr8.4:12058498-12058517 | MS.gene78476:CDS | 30.0% | |
| GAAAGTTGTTGCATTATTTC+TGG | + | chr8.4:12059122-12059141 | None:intergenic | 30.0% | |
| TACAGGAATAAAACACTCTT+AGG | + | chr8.4:12057422-12057441 | None:intergenic | 30.0% | |
| TCTGACTAAGTGATCAAAAT+TGG | - | chr8.4:12058767-12058786 | MS.gene78476:intron | 30.0% | |
| TGAAAAACTAGACAAAGTCT+TGG | - | chr8.4:12058920-12058939 | MS.gene78476:intron | 30.0% | |
| TTGTACAAATGGTCTATTGT+TGG | - | chr8.4:12057687-12057706 | MS.gene78476:intron | 30.0% | |
| TTTATTGCTATACTAGCATG+AGG | - | chr8.4:12058216-12058235 | MS.gene78476:CDS | 30.0% | |
| TTTGCATTAGCTAAAATGTG+GGG | - | chr8.4:12058270-12058289 | MS.gene78476:CDS | 30.0% | |
| TTTGGAAGATGAAATTCAGT+GGG | - | chr8.4:12058516-12058535 | MS.gene78476:CDS | 30.0% | |
| ! | GTATTTTACGTAGGTCATTT+TGG | - | chr8.4:12057439-12057458 | MS.gene78476:CDS | 30.0% |
| AATACCTGTGTTTGTACAAG+TGG | + | chr8.4:12058417-12058436 | None:intergenic | 35.0% | |
| AATCCACTTTACGAAGTACA+GGG | - | chr8.4:12058996-12059015 | MS.gene78476:intron | 35.0% | |
| ATCCAGCCAGAAATAAAAGA+TGG | + | chr8.4:12057658-12057677 | None:intergenic | 35.0% | |
| CAGAGATCACAGTATGAATT+CGG | + | chr8.4:12058751-12058770 | None:intergenic | 35.0% | |
| GGATATACATATCCAATCTC+AGG | - | chr8.4:12059085-12059104 | MS.gene78476:intron | 35.0% | |
| GGTTGAGACATTCTATAGTA+GGG | + | chr8.4:12058357-12058376 | None:intergenic | 35.0% | |
| GTGATCTGGTCAAAATTCAT+TGG | + | chr8.4:12057772-12057791 | None:intergenic | 35.0% | |
| GTTCTTCTAATTCCTGAGAT+TGG | + | chr8.4:12059100-12059119 | None:intergenic | 35.0% | |
| TCAATCTGAGCACATGAATT+AGG | + | chr8.4:12059146-12059165 | None:intergenic | 35.0% | |
| TGAATTCGGTAAAAAGAAGC+TGG | + | chr8.4:12058737-12058756 | None:intergenic | 35.0% | |
| TGGTTGAGACATTCTATAGT+AGG | + | chr8.4:12058358-12058377 | None:intergenic | 35.0% | |
| TGTATAACTCTGTGCATTGT+GGG | + | chr8.4:12058150-12058169 | None:intergenic | 35.0% | |
| TTGGAAGATGAAATTCAGTG+GGG | - | chr8.4:12058517-12058536 | MS.gene78476:CDS | 35.0% | |
| TTGTATAACTCTGTGCATTG+TGG | + | chr8.4:12058151-12058170 | None:intergenic | 35.0% | |
| ! | ACAGGGGTTTAATTGTTTTC+AGG | - | chr8.4:12059013-12059032 | MS.gene78476:intron | 35.0% |
| ! | AGCATTGAAAGAACAGCATA+AGG | + | chr8.4:12057736-12057755 | None:intergenic | 35.0% |
| AACCAATCACAGCAATGTGT+GGG | + | chr8.4:12058638-12058657 | None:intergenic | 40.0% | |
| AGCCAATTTATGTCATGGCA+GGG | - | chr8.4:12058093-12058112 | MS.gene78476:intron | 40.0% | |
| ATCCACTTTACGAAGTACAG+GGG | - | chr8.4:12058997-12059016 | MS.gene78476:intron | 40.0% | |
| ATGAAATTCAGTGGGGAAGA+TGG | - | chr8.4:12058524-12058543 | MS.gene78476:CDS | 40.0% | |
| CAACAGACTAGAGATGAAAG+CGG | + | chr8.4:12058946-12058965 | None:intergenic | 40.0% | |
| CAATCCACTTTACGAAGTAC+AGG | - | chr8.4:12058995-12059014 | MS.gene78476:intron | 40.0% | |
| CAGATCACTCTTTGTTCTGT+AGG | - | chr8.4:12057784-12057803 | MS.gene78476:intron | 40.0% | |
| CTACAGAACAAAGAGTGATC+TGG | + | chr8.4:12057786-12057805 | None:intergenic | 40.0% | |
| CTCTCAGCCAATTTATGTCA+TGG | - | chr8.4:12058088-12058107 | MS.gene78476:intron | 40.0% | |
| TCAACCACTTGTACAAACAC+AGG | - | chr8.4:12058410-12058429 | MS.gene78476:CDS | 40.0% | |
| TTTACAGTACTGTGCAAAGG+TGG | - | chr8.4:12058009-12058028 | MS.gene78476:intron | 40.0% | |
| ! | CAGTGACCCTTAACTTTTAC+AGG | - | chr8.4:12059064-12059083 | MS.gene78476:intron | 40.0% |
| ! | TGGGCTAATGGATAAACTTG+TGG | + | chr8.4:12058378-12058397 | None:intergenic | 40.0% |
| !! | TGGTTGAGTTTGCTGATCTT+GGG | + | chr8.4:12058397-12058416 | None:intergenic | 40.0% |
| !! | TTTGACTTGTGTATCCCTTC+TGG | - | chr8.4:12058592-12058611 | MS.gene78476:intron | 40.0% |
| !!! | AGCCATCTTTTATTTCTGGC+TGG | - | chr8.4:12057653-12057672 | MS.gene78476:intron | 40.0% |
| AAATTCAGTGGGGAAGATGG+AGG | - | chr8.4:12058527-12058546 | MS.gene78476:CDS | 45.0% | |
| AACCCCTGTACTTCGTAAAG+TGG | + | chr8.4:12059002-12059021 | None:intergenic | 45.0% | |
| AATCTCATGGCAAAGCCAGA+AGG | + | chr8.4:12058610-12058629 | None:intergenic | 45.0% | |
| AATTTATGTCATGGCAGGGC+AGG | - | chr8.4:12058097-12058116 | MS.gene78476:intron | 45.0% | |
| ACAGCGTAACTGGTACCAAT+GGG | + | chr8.4:12058063-12058082 | None:intergenic | 45.0% | |
| ACATGCTAACCCATGTACTC+TGG | + | chr8.4:12057864-12057883 | None:intergenic | 45.0% | |
| ACCAATCACAGCAATGTGTG+GGG | + | chr8.4:12058637-12058656 | None:intergenic | 45.0% | |
| ATCTCATGGCAAAGCCAGAA+GGG | + | chr8.4:12058609-12058628 | None:intergenic | 45.0% | |
| CAACCAATCACAGCAATGTG+TGG | + | chr8.4:12058639-12058658 | None:intergenic | 45.0% | |
| CACACATTGCTGTGATTGGT+TGG | - | chr8.4:12058637-12058656 | MS.gene78476:intron | 45.0% | |
| CAGCCAATTTATGTCATGGC+AGG | - | chr8.4:12058092-12058111 | MS.gene78476:intron | 45.0% | |
| CGCTTTCATCTCTAGTCTGT+TGG | - | chr8.4:12058944-12058963 | MS.gene78476:intron | 45.0% | |
| GATGGAGGAAGAAGTGATGT+AGG | - | chr8.4:12058542-12058561 | MS.gene78476:CDS | 45.0% | |
| TGCCCTGCCATGACATAAAT+TGG | + | chr8.4:12058098-12058117 | None:intergenic | 45.0% | |
| TGTGTGGGGAAGTAATCTCA+TGG | + | chr8.4:12058623-12058642 | None:intergenic | 45.0% | |
| TTAGCTAAAATGTGGGGTCC+TGG | - | chr8.4:12058276-12058295 | MS.gene78476:CDS | 45.0% | |
| ! | ACATTGCTGTGATTGGTTGG+TGG | - | chr8.4:12058640-12058659 | MS.gene78476:intron | 45.0% |
| ! | GTTTGCTGATCTTGGGCTAA+TGG | + | chr8.4:12058390-12058409 | None:intergenic | 45.0% |
| !! | AACTGGTACCAATGGGTTGT+GGG | + | chr8.4:12058056-12058075 | None:intergenic | 45.0% |
| !! | GAGTACATGGGTTAGCATGT+TGG | - | chr8.4:12057864-12057883 | MS.gene78476:intron | 45.0% |
| !! | GTGGTTGAGTTTGCTGATCT+TGG | + | chr8.4:12058398-12058417 | None:intergenic | 45.0% |
| !! | TAACTGGTACCAATGGGTTG+TGG | + | chr8.4:12058057-12058076 | None:intergenic | 45.0% |
| ACAGAGGCAACGAATCTCAG+AGG | + | chr8.4:12057836-12057855 | None:intergenic | 50.0% | |
| ATGGCAGGGCAGGAAATTAC+CGG | - | chr8.4:12058107-12058126 | MS.gene78476:intron | 50.0% | |
| CACAGCGTAACTGGTACCAA+TGG | + | chr8.4:12058064-12058083 | None:intergenic | 50.0% | |
| CCATCCATCCACCAAGTGTA+TGG | + | chr8.4:12058680-12058699 | None:intergenic | 50.0% | |
| CTGAGATTCGTTGCCTCTGT+GGG | - | chr8.4:12057836-12057855 | MS.gene78476:intron | 50.0% | |
| GAGAGAGAACACAGCGTAAC+TGG | + | chr8.4:12058073-12058092 | None:intergenic | 50.0% | |
| GGCAATCAAATGAAGCCTGC+CGG | + | chr8.4:12058129-12058148 | None:intergenic | 50.0% | |
| GTTCCCATCCACCATACACT+TGG | - | chr8.4:12058666-12058685 | MS.gene78476:intron | 50.0% | |
| TCCATCCACCAAGTGTATGG+TGG | + | chr8.4:12058677-12058696 | None:intergenic | 50.0% | |
| TCCCCACACATTGCTGTGAT+TGG | - | chr8.4:12058633-12058652 | MS.gene78476:intron | 50.0% | |
| ! | CCATACACTTGGTGGATGGA+TGG | - | chr8.4:12058677-12058696 | MS.gene78476:CDS | 50.0% |
| ! | TCCACCAAGTGTATGGTGGA+TGG | + | chr8.4:12058673-12058692 | None:intergenic | 50.0% |
| ! | TCCACCATACACTTGGTGGA+TGG | - | chr8.4:12058673-12058692 | MS.gene78476:CDS | 50.0% |
| ! | TCTGAGATTCGTTGCCTCTG+TGG | - | chr8.4:12057835-12057854 | MS.gene78476:intron | 50.0% |
| !! | CCACCAAGTGTATGGTGGAT+GGG | + | chr8.4:12058672-12058691 | None:intergenic | 50.0% |
| ATCCCTCCTTGTTCAGCACC+AGG | + | chr8.4:12058297-12058316 | None:intergenic | 55.0% | |
| ATGTACTCTGGTGCCCACAG+AGG | + | chr8.4:12057852-12057871 | None:intergenic | 55.0% | |
| CCCATCCACCATACACTTGG+TGG | - | chr8.4:12058669-12058688 | MS.gene78476:CDS | 55.0% | |
| CTGGTTCACCCACAACCCAT+TGG | - | chr8.4:12058045-12058064 | MS.gene78476:intron | 55.0% | |
| CTGTGGGCACCAGAGTACAT+GGG | - | chr8.4:12057852-12057871 | MS.gene78476:intron | 55.0% | |
| TCTGTGGGCACCAGAGTACA+TGG | - | chr8.4:12057851-12057870 | MS.gene78476:intron | 55.0% | |
| ! | GTCCTGGTGCTGAACAAGGA+GGG | - | chr8.4:12058292-12058311 | MS.gene78476:intron | 55.0% |
| !! | CAATGGGTTGTGGGTGAACC+AGG | + | chr8.4:12058047-12058066 | None:intergenic | 55.0% |
| AGGTGGCTTACCACTGCTCC+TGG | - | chr8.4:12058026-12058045 | MS.gene78476:intron | 60.0% | |
| CAGGGCAGGAAATTACCGGC+AGG | - | chr8.4:12058111-12058130 | MS.gene78476:intron | 60.0% | |
| TGTGGGTGAACCAGGAGCAG+TGG | + | chr8.4:12058039-12058058 | None:intergenic | 60.0% | |
| ! | GGTCCTGGTGCTGAACAAGG+AGG | - | chr8.4:12058291-12058310 | MS.gene78476:intron | 60.0% |
| ! | TGGGGTCCTGGTGCTGAACA+AGG | - | chr8.4:12058288-12058307 | MS.gene78476:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 12057391 | 12059187 | 12057391 | ID=MS.gene78476 |
| chr8.4 | mRNA | 12057391 | 12059187 | 12057391 | ID=MS.gene78476.t1;Parent=MS.gene78476 |
| chr8.4 | exon | 12059182 | 12059187 | 12059182 | ID=MS.gene78476.t1.exon1;Parent=MS.gene78476.t1 |
| chr8.4 | CDS | 12059182 | 12059187 | 12059182 | ID=cds.MS.gene78476.t1;Parent=MS.gene78476.t1 |
| chr8.4 | exon | 12058669 | 12058772 | 12058669 | ID=MS.gene78476.t1.exon2;Parent=MS.gene78476.t1 |
| chr8.4 | CDS | 12058669 | 12058772 | 12058669 | ID=cds.MS.gene78476.t1;Parent=MS.gene78476.t1 |
| chr8.4 | exon | 12058390 | 12058562 | 12058390 | ID=MS.gene78476.t1.exon3;Parent=MS.gene78476.t1 |
| chr8.4 | CDS | 12058390 | 12058562 | 12058390 | ID=cds.MS.gene78476.t1;Parent=MS.gene78476.t1 |
| chr8.4 | exon | 12058147 | 12058298 | 12058147 | ID=MS.gene78476.t1.exon4;Parent=MS.gene78476.t1 |
| chr8.4 | CDS | 12058147 | 12058298 | 12058147 | ID=cds.MS.gene78476.t1;Parent=MS.gene78476.t1 |
| chr8.4 | exon | 12057391 | 12057492 | 12057391 | ID=MS.gene78476.t1.exon5;Parent=MS.gene78476.t1 |
| chr8.4 | CDS | 12057391 | 12057492 | 12057391 | ID=cds.MS.gene78476.t1;Parent=MS.gene78476.t1 |
| Gene Sequence |
| Protein sequence |
