AlfalfaGEDB | MS.gene78608

M. sativa cultivar XinJiangDaYe / MS.gene78608

KEGG: K13648
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016757
PFAM: PF01501.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78608.t1	XP_024632083.1	97.8	535	12	0	1	535	1	535	1.60E-306	1061.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78608.t1	Q949Q1	72.5	534	145	1	1	532	1	534	1.6e-230	800.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78608.t1	A0A396J7Q2	97.8	535	12	0	1	535	1	535	1.1e-306	1061.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052611	MS.gene78608	0.823421	1.40E-53	-1.69E-46

Showing 1 to 1 of 1 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78608.t1	MTR_2g461670	93.580	514	25	1	22	535	85	590	0.0	987
MS.gene78608.t1	MTR_4g109890	79.065	535	112	0	1	535	1	535	0.0	909
MS.gene78608.t1	MTR_2g015550	53.933	534	240	5	1	532	1	530	0.0	615
MS.gene78608.t1	MTR_2g006790	48.224	535	245	7	1	532	1	506	0.0	523
MS.gene78608.t1	MTR_2g027740	45.161	496	259	5	46	534	176	665	7.28e-155	457
MS.gene78608.t1	MTR_7g075840	47.527	465	236	5	73	534	203	662	3.32e-148	441
MS.gene78608.t1	MTR_3g107930	47.059	459	233	4	81	534	133	586	9.23e-147	434
MS.gene78608.t1	MTR_8g092000	45.690	464	243	5	73	535	124	579	5.81e-146	432
MS.gene78608.t1	MTR_3g107930	47.059	459	233	4	81	534	210	663	9.17e-146	434
MS.gene78608.t1	MTR_8g033360	45.958	433	224	4	73	500	170	597	1.48e-133	404

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78608.t1	AT1G18580	72.989	522	139	1	16	535	16	537	0.0	808
MS.gene78608.t1	AT2G20810	51.769	537	250	7	1	532	1	533	0.0	570
MS.gene78608.t1	AT5G47780	46.695	469	244	4	68	535	152	615	5.25e-157	461
MS.gene78608.t1	AT3G61130	47.712	459	231	5	79	534	219	671	4.16e-154	456
MS.gene78608.t1	AT4G38270	45.032	473	248	7	70	534	206	674	2.66e-142	426
MS.gene78608.t1	AT4G38270	45.032	473	248	7	70	534	210	678	2.71e-142	426
MS.gene78608.t1	AT2G46480	44.397	464	240	4	79	534	85	538	6.10e-134	400
MS.gene78608.t1	AT2G46480	44.397	464	240	4	79	534	98	551	9.85e-134	400
MS.gene78608.t1	AT3G25140	47.330	412	207	5	130	535	151	558	3.17e-133	399
MS.gene78608.t1	AT2G46480	41.164	464	230	5	79	534	85	513	1.68e-118	359

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

Find 0 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTACTTGGTCCAAATT+TGG	-	16936:8018-8037	MS.gene78608:CDS	30.0%
ACATAATTACCATCAAGATC+GGG	-	16936:7805-7824	MS.gene78608:CDS	30.0%
AGTTGTAACACAATCTAGAA+AGG	+	16936:8771-8790	MS.gene78608:intergenic	30.0%
ATGTGAAACTTACTTCTGAT+TGG	-	16936:9715-9734	MS.gene78608:intron	30.0%
CAATAACAATTTGATGTGAG+AGG	-	16936:8125-8144	MS.gene78608:CDS	30.0%
CAGAAGAAAATCAGAAACTA+TGG	+	16936:8653-8672	MS.gene78608:intergenic	30.0%
CCTTGAAGATTAAAGTTGAA+AGG	+	16936:9542-9561	MS.gene78608:intergenic	30.0%
CCTTTCAACTTTAATCTTCA+AGG	-	16936:9539-9558	MS.gene78608:intron	30.0%
CTCCTTCATATTAAAGCAAA+AGG	-	16936:7993-8012	MS.gene78608:CDS	30.0%
CTTATAGATAATCTCAACCA+TGG	+	16936:10638-10657	MS.gene78608:intergenic	30.0%

Showing 1 to 10 of 181 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
16936	gene	7692	10730	7692	ID=MS.gene78608
16936	mRNA	7692	10730	7692	ID=MS.gene78608.t1;Parent=MS.gene78608
16936	exon	10578	10730	10578	ID=MS.gene78608.t1.exon1;Parent=MS.gene78608.t1
16936	CDS	10578	10730	10578	ID=cds.MS.gene78608.t1;Parent=MS.gene78608.t1
16936	exon	7692	9146	7692	ID=MS.gene78608.t1.exon2;Parent=MS.gene78608.t1
16936	CDS	7692	9146	7692	ID=cds.MS.gene78608.t1;Parent=MS.gene78608.t1

Gene Sequence

>MS.gene78608

ATGGGGCGTCGGGCTGCTGAGTTTCGGCGCCCGATTCGACGGAAGTTGTCTTATGGGATCTGTTTTCTTCTTGGAGCATTTTCTGTTGTCGGTTTGGTTATGGTTTTTGTTCAACATAATTACCATCAAGATCGGGTCCAACATACCCTTCTGGTAATATTACATTCTCCCTTTATCAGATGCGACCAATCAAGATTTAAATTAATGTTATTCATCTTATGTATAATTTTGTTTTAAATTTCAATTCATTTATCAGGATGGTTTTGTTTTATAATTGTATTTGCTGTTTTTATCTGTGCTACTCCTTCATATTAAAGCAAAAGGTCAAATGTACTTGGTCCAAATTTGGAGTAAATACATTTGACATTTTGTCTGTATTTAAGACTGGATGGAGTAACTTCTAACTGTTGTTTCCTCTCTTTTTTACTCTTTTCAATAACAATTTGATGTGAGAGGGATGCATGTTTAAAACAACACAGTTTTGATCATAATAATTACATTGTTTTTATCATAGTCCTGCAGTTAGACTTGTCTTGGTCATAAGTAATTGATTTTGTAATTTTCAGATTTCAACTTATAATTTTTGTTATAAGTGGCTTTTGTAATTTTGTTTCATGTTTAAAATGATGTTTTTTCTTTCTCACTTGTTAACACAAATTTCCATTTAAATTCATGATTTTGCGTACATGTTAGTTATAATTCCTTTTTTATTATGAATCTGAACCAGTTTCAATCATGTTCTTTAACATTAGGGGTTTGAATTCATACAGAGAGGAAGTTGAGAAAGATTTCTTGTTGTAAAAATGGTTTTAACATTTAGTGATTTGTTACTACTTTGTGAAACAGGAACTAAGTGTTACCTTTTGCAGCTATTAGGTGTTCACTAACACACATCATTACACTTGCACATCCCATTCTGCGAAATGGTTATACCGTTCACAATTCCTTGTAGGATCTGCCATAGTTTCTGATTTTCTTCTGTCTTCTGATTTTAAATATCAACTTATCCCCCATTTAGTTCATTTGACAAGTTTCTAGATATATGATATATCTAGTTATGTAGCATAGAAAATATACCTTTCTAGATTGTGTTACAACTGTAACGATTTAGTGTTTATTATTACATTACATCATTGCCCTCATTATTACAGCACTTCTATAGTTTTTTCCCTTTTCAGTCTTGCAACAACAATGGAAATATTTGAAGTATATTCTTGAAATCTTCATGAATATGGTGTGATTTGCTTTTATACATGATAGAAGATGCAATAATAGTATATAATTTGTGTTTCTGGATCAAAAATTGAAGTTGAGTAATTGTCATTCGAGGCTTAAATAGTGACGTAGGAAACATGGTCAAGTGTGTGACTTCATAGCGATACATGAGAAAATAATCAAGATATCTCAAAGCAATGTAACTGTAACTGTAAATTCTACAACAATTTTAGGATTAGGTGACATTGCTTATATAAAATAATGACTGTTGTTACTTGTTACACTTTTGGTCATATTGCTTTTTCCTGTTAAAACTATTTTTGTCTCATATGCCTCGTGTGTACTTACCGAGTAAGTGACATATTGCAGGACAGGAATACAAAGGATGAAAATTTTCCTAAGGATAGGCTGAATTTTACTGAAGAAATTTTAAGTGCGACATCTTTTTCAAGGCAATTAACAGAGGAAATGGTTCTTGCCAAGGCTTATGTGGTTATTGCAAAAGAACACAATAATCTTCACCTAGCATGGGAGCTTAGCTCAAAGATTAGAAGTTGTCAACTTTTGCTTTCAAAAGCCGCCATGACTGGAAAGCCTGTTAACAAGGAAGAAGCCGAACCGATTATAAGAAGCCTTTCAACTTTAATCTTCAAGGCGCAAGATATCCATTATGACATTGCAACAACTATAGTTACAATGAAATCACATATTCAAGCACTTGAAGAGAGAGCAATTGCAGCTACAGTTCAAAGTAACGTGTTTGCTCAAATATCGGCTGAAGCACTACCGAAGAGTCTTCATTGCTTACATGTGAAACTTACTTCTGATTGGCTAAAGAAACCTTCCCTGCAAAAACTCTCGGATGAGACGAGAAACTCCCTCCGGCTAACGGATCAGCATCTATATCATTTCTGCATCTTTTCGGATAATGTACTGGCAACATTGGTCGTTGTTAACTCAACAGTTCTCAATGCTGAATATCCAATAAAATTAGTTTTTCATATTGTAACCGACGGTGTCAACTATGGAACGATGCAAGCATGGTTTCTCAGTAATGACTTTAAAGGAGCAACGATAGAGGTCCAGAATGTTGAAGAATTTCATTGGCTGAATGAATCTTATTCTCCGATTGTCAAACAGCTGCTCGATTCAGAATCTCGAGCCTTTTATTTTGGGGCATATCCGGATGTAAATGCTGAACCGAAACTGCGGAACTCCAAATTTTTGTTATTACTAAACCATCTTCGGTTTTACATCCCTGAGATTTATCCACAACTTGAGAAGATTGTTTTCCTTGATGACGATGTTGTTGTCCAAAAAGACCTAACACCACTTTTCTCACTTGAATTGCATGGAAACGTAATCGGTGCAGTCGAAACCTGTCTTGAAGCATTTCACAGGTACTACAAATATTTCAACTTCTCAAATTCAATTATAAGCTCAAAGTTTGATCCACAGGCATGCGCGTGGTCATTAGGCATGAATGTTTTTGACTTGATTCAATGGAAGAAAGCAAACGTGACCGCAATATATCACTATTGGCAAGAGAAGAATGCCGATGGATCACTCTGGAAGCTCGGCACACTTCCTCCTGCACTTCTTAGTTTTTATGGTTTGGCCGAACCGCTTGACCGGAGATGGCATGTTTTAGGATTAGGTTATGACCTCAATATCGATAATCGACTCATTGAAAGTGCGGCTGTTATTCACTTCAATGGGAACATGAAACCATGGTTGAGATTATCTATAAGCAGGTATAGGCCACTATGGAACAAGTACATAAATCAAAGTCACCCTTATATTCAAGAATGTGCTATAGGCTAA

Protein sequence

>MS.gene78608.t1

MGRRAAEFRRPIRRKLSYGICFLLGAFSVVGLVMVFVQHNYHQDRVQHTLLDRNTKDENFPKDRLNFTEEILSATSFSRQLTEEMVLAKAYVVIAKEHNNLHLAWELSSKIRSCQLLLSKAAMTGKPVNKEEAEPIIRSLSTLIFKAQDIHYDIATTIVTMKSHIQALEERAIAATVQSNVFAQISAEALPKSLHCLHVKLTSDWLKKPSLQKLSDETRNSLRLTDQHLYHFCIFSDNVLATLVVVNSTVLNAEYPIKLVFHIVTDGVNYGTMQAWFLSNDFKGATIEVQNVEEFHWLNESYSPIVKQLLDSESRAFYFGAYPDVNAEPKLRNSKFLLLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLELHGNVIGAVETCLEAFHRYYKYFNFSNSIISSKFDPQACAWSLGMNVFDLIQWKKANVTAIYHYWQEKNADGSLWKLGTLPPALLSFYGLAEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLRLSISRYRPLWNKYINQSHPYIQECAIG