Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78608.t1 | XP_024632083.1 | 97.8 | 535 | 12 | 0 | 1 | 535 | 1 | 535 | 1.60E-306 | 1061.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78608.t1 | Q949Q1 | 72.5 | 534 | 145 | 1 | 1 | 532 | 1 | 534 | 1.6e-230 | 800.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78608.t1 | A0A396J7Q2 | 97.8 | 535 | 12 | 0 | 1 | 535 | 1 | 535 | 1.1e-306 | 1061.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052611 | MS.gene78608 | 0.823421 | 1.40E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78608.t1 | MTR_2g461670 | 93.580 | 514 | 25 | 1 | 22 | 535 | 85 | 590 | 0.0 | 987 |
| MS.gene78608.t1 | MTR_4g109890 | 79.065 | 535 | 112 | 0 | 1 | 535 | 1 | 535 | 0.0 | 909 |
| MS.gene78608.t1 | MTR_2g015550 | 53.933 | 534 | 240 | 5 | 1 | 532 | 1 | 530 | 0.0 | 615 |
| MS.gene78608.t1 | MTR_2g006790 | 48.224 | 535 | 245 | 7 | 1 | 532 | 1 | 506 | 0.0 | 523 |
| MS.gene78608.t1 | MTR_2g027740 | 45.161 | 496 | 259 | 5 | 46 | 534 | 176 | 665 | 7.28e-155 | 457 |
| MS.gene78608.t1 | MTR_7g075840 | 47.527 | 465 | 236 | 5 | 73 | 534 | 203 | 662 | 3.32e-148 | 441 |
| MS.gene78608.t1 | MTR_3g107930 | 47.059 | 459 | 233 | 4 | 81 | 534 | 133 | 586 | 9.23e-147 | 434 |
| MS.gene78608.t1 | MTR_8g092000 | 45.690 | 464 | 243 | 5 | 73 | 535 | 124 | 579 | 5.81e-146 | 432 |
| MS.gene78608.t1 | MTR_3g107930 | 47.059 | 459 | 233 | 4 | 81 | 534 | 210 | 663 | 9.17e-146 | 434 |
| MS.gene78608.t1 | MTR_8g033360 | 45.958 | 433 | 224 | 4 | 73 | 500 | 170 | 597 | 1.48e-133 | 404 |
| MS.gene78608.t1 | MTR_7g055600 | 46.117 | 412 | 212 | 5 | 130 | 535 | 26 | 433 | 2.83e-125 | 374 |
| MS.gene78608.t1 | MTR_7g057530 | 46.117 | 412 | 212 | 5 | 130 | 535 | 26 | 433 | 2.83e-125 | 374 |
| MS.gene78608.t1 | MTR_6g016380 | 44.039 | 411 | 221 | 5 | 130 | 535 | 148 | 554 | 4.38e-117 | 357 |
| MS.gene78608.t1 | MTR_7g096160 | 37.093 | 461 | 254 | 7 | 80 | 534 | 222 | 652 | 3.08e-99 | 314 |
| MS.gene78608.t1 | MTR_2g082650 | 37.805 | 410 | 236 | 5 | 144 | 534 | 1 | 410 | 9.91e-98 | 302 |
| MS.gene78608.t1 | MTR_2g082650 | 38.333 | 420 | 236 | 7 | 136 | 534 | 122 | 539 | 2.53e-97 | 305 |
| MS.gene78608.t1 | MTR_7g012370 | 36.543 | 405 | 238 | 6 | 139 | 524 | 121 | 525 | 1.78e-94 | 298 |
| MS.gene78608.t1 | MTR_4g133570 | 37.073 | 410 | 237 | 5 | 146 | 534 | 53 | 462 | 3.26e-92 | 290 |
| MS.gene78608.t1 | MTR_6g013840 | 36.867 | 415 | 243 | 6 | 139 | 534 | 116 | 530 | 3.93e-88 | 281 |
| MS.gene78608.t1 | MTR_3g452360 | 37.011 | 435 | 248 | 11 | 118 | 534 | 102 | 528 | 4.77e-87 | 278 |
| MS.gene78608.t1 | MTR_3g452360 | 39.221 | 385 | 210 | 9 | 168 | 534 | 1 | 379 | 2.00e-86 | 272 |
| MS.gene78608.t1 | MTR_1g070490 | 33.399 | 509 | 283 | 14 | 46 | 535 | 127 | 598 | 7.52e-81 | 265 |
| MS.gene78608.t1 | MTR_7g012370 | 33.956 | 321 | 195 | 5 | 139 | 442 | 121 | 441 | 7.84e-64 | 215 |
| MS.gene78608.t1 | MTR_7g074680 | 30.968 | 465 | 289 | 10 | 79 | 534 | 122 | 563 | 2.41e-57 | 201 |
| MS.gene78608.t1 | MTR_7g074680 | 30.968 | 465 | 289 | 10 | 79 | 534 | 162 | 603 | 2.64e-57 | 201 |
| MS.gene78608.t1 | MTR_7g074680 | 30.968 | 465 | 289 | 10 | 79 | 534 | 182 | 623 | 3.05e-57 | 202 |
| MS.gene78608.t1 | MTR_7g074680 | 30.968 | 465 | 289 | 10 | 79 | 534 | 182 | 623 | 3.41e-57 | 201 |
| MS.gene78608.t1 | MTR_7g074680 | 30.968 | 465 | 289 | 10 | 79 | 534 | 202 | 643 | 4.41e-57 | 202 |
| MS.gene78608.t1 | MTR_7g074680 | 34.409 | 372 | 219 | 7 | 169 | 534 | 308 | 660 | 2.31e-55 | 197 |
| MS.gene78608.t1 | MTR_4g133942 | 49.749 | 199 | 70 | 3 | 339 | 534 | 161 | 332 | 9.03e-51 | 177 |
| MS.gene78608.t1 | MTR_3g092310 | 31.937 | 191 | 120 | 5 | 340 | 521 | 140 | 329 | 7.60e-25 | 105 |
| MS.gene78608.t1 | MTR_7g109210 | 32.065 | 184 | 118 | 4 | 340 | 517 | 159 | 341 | 8.42e-25 | 106 |
| MS.gene78608.t1 | MTR_5g036580 | 34.031 | 191 | 117 | 6 | 340 | 521 | 166 | 356 | 1.49e-24 | 106 |
| MS.gene78608.t1 | MTR_6g008900 | 34.239 | 184 | 109 | 6 | 340 | 513 | 165 | 346 | 4.43e-24 | 104 |
| MS.gene78608.t1 | MTR_4g071620 | 34.239 | 184 | 109 | 6 | 340 | 513 | 165 | 346 | 4.43e-24 | 104 |
| MS.gene78608.t1 | MTR_8g078240 | 34.021 | 194 | 115 | 6 | 340 | 521 | 142 | 334 | 7.33e-24 | 103 |
| MS.gene78608.t1 | MTR_3g111600 | 34.031 | 191 | 117 | 5 | 340 | 521 | 80 | 270 | 1.24e-23 | 101 |
| MS.gene78608.t1 | MTR_4g118030 | 31.073 | 177 | 114 | 5 | 340 | 509 | 145 | 320 | 1.35e-22 | 99.8 |
| MS.gene78608.t1 | MTR_1g021855 | 33.679 | 193 | 116 | 6 | 340 | 521 | 165 | 356 | 7.12e-22 | 97.8 |
| MS.gene78608.t1 | MTR_7g094230 | 28.634 | 227 | 150 | 5 | 294 | 509 | 100 | 325 | 1.10e-21 | 97.1 |
| MS.gene78608.t1 | MTR_5g019220 | 32.673 | 202 | 125 | 6 | 340 | 531 | 166 | 366 | 3.93e-21 | 95.5 |
| MS.gene78608.t1 | MTR_1g089820 | 30.000 | 180 | 119 | 4 | 340 | 513 | 154 | 332 | 4.87e-18 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78608.t1 | AT1G18580 | 72.989 | 522 | 139 | 1 | 16 | 535 | 16 | 537 | 0.0 | 808 |
| MS.gene78608.t1 | AT2G20810 | 51.769 | 537 | 250 | 7 | 1 | 532 | 1 | 533 | 0.0 | 570 |
| MS.gene78608.t1 | AT5G47780 | 46.695 | 469 | 244 | 4 | 68 | 535 | 152 | 615 | 5.25e-157 | 461 |
| MS.gene78608.t1 | AT3G61130 | 47.712 | 459 | 231 | 5 | 79 | 534 | 219 | 671 | 4.16e-154 | 456 |
| MS.gene78608.t1 | AT4G38270 | 45.032 | 473 | 248 | 7 | 70 | 534 | 206 | 674 | 2.66e-142 | 426 |
| MS.gene78608.t1 | AT4G38270 | 45.032 | 473 | 248 | 7 | 70 | 534 | 210 | 678 | 2.71e-142 | 426 |
| MS.gene78608.t1 | AT2G46480 | 44.397 | 464 | 240 | 4 | 79 | 534 | 85 | 538 | 6.10e-134 | 400 |
| MS.gene78608.t1 | AT2G46480 | 44.397 | 464 | 240 | 4 | 79 | 534 | 98 | 551 | 9.85e-134 | 400 |
| MS.gene78608.t1 | AT3G25140 | 47.330 | 412 | 207 | 5 | 130 | 535 | 151 | 558 | 3.17e-133 | 399 |
| MS.gene78608.t1 | AT2G46480 | 41.164 | 464 | 230 | 5 | 79 | 534 | 85 | 513 | 1.68e-118 | 359 |
| MS.gene78608.t1 | AT2G46480 | 41.164 | 464 | 230 | 5 | 79 | 534 | 98 | 526 | 4.21e-118 | 358 |
| MS.gene78608.t1 | AT3G02350 | 41.509 | 477 | 255 | 8 | 79 | 535 | 88 | 560 | 3.71e-115 | 352 |
| MS.gene78608.t1 | AT2G30575 | 36.009 | 461 | 262 | 5 | 79 | 534 | 176 | 608 | 5.23e-101 | 317 |
| MS.gene78608.t1 | AT5G54690 | 38.931 | 393 | 221 | 5 | 161 | 534 | 140 | 532 | 1.51e-97 | 306 |
| MS.gene78608.t1 | AT3G01040 | 38.072 | 415 | 238 | 5 | 139 | 534 | 116 | 530 | 4.23e-97 | 305 |
| MS.gene78608.t1 | AT3G01040 | 38.072 | 415 | 238 | 5 | 139 | 534 | 116 | 530 | 4.23e-97 | 305 |
| MS.gene78608.t1 | AT5G15470 | 38.313 | 415 | 237 | 5 | 139 | 534 | 116 | 530 | 1.98e-95 | 300 |
| MS.gene78608.t1 | AT1G06780 | 34.716 | 458 | 271 | 6 | 78 | 532 | 153 | 585 | 1.58e-93 | 297 |
| MS.gene78608.t1 | AT1G06780 | 34.565 | 460 | 273 | 6 | 78 | 534 | 166 | 600 | 3.23e-93 | 296 |
| MS.gene78608.t1 | AT3G01040 | 36.364 | 407 | 223 | 5 | 139 | 534 | 116 | 497 | 9.94e-86 | 274 |
| MS.gene78608.t1 | AT3G58790 | 38.350 | 412 | 228 | 10 | 143 | 534 | 1 | 406 | 5.71e-84 | 266 |
| MS.gene78608.t1 | AT3G58790 | 36.768 | 427 | 248 | 8 | 128 | 534 | 114 | 538 | 3.94e-83 | 268 |
| MS.gene78608.t1 | AT2G38650 | 32.096 | 458 | 288 | 9 | 79 | 534 | 181 | 617 | 4.72e-67 | 228 |
| MS.gene78608.t1 | AT2G38650 | 32.096 | 458 | 288 | 9 | 79 | 534 | 181 | 617 | 4.72e-67 | 228 |
| MS.gene78608.t1 | AT2G38650 | 31.978 | 369 | 226 | 10 | 79 | 444 | 181 | 527 | 3.03e-43 | 162 |
| MS.gene78608.t1 | AT3G28340 | 29.464 | 336 | 193 | 13 | 202 | 521 | 39 | 346 | 2.06e-27 | 114 |
| MS.gene78608.t1 | AT1G70090 | 32.984 | 191 | 119 | 6 | 340 | 521 | 169 | 359 | 1.26e-24 | 106 |
| MS.gene78608.t1 | AT1G70090 | 32.984 | 191 | 119 | 6 | 340 | 521 | 169 | 359 | 1.26e-24 | 106 |
| MS.gene78608.t1 | AT3G62660 | 31.122 | 196 | 125 | 5 | 340 | 526 | 164 | 358 | 3.10e-24 | 104 |
| MS.gene78608.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 340 | 521 | 150 | 339 | 4.85e-24 | 103 |
| MS.gene78608.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 340 | 521 | 150 | 339 | 4.85e-24 | 103 |
| MS.gene78608.t1 | AT4G02130 | 31.937 | 191 | 120 | 5 | 340 | 521 | 150 | 339 | 4.85e-24 | 103 |
| MS.gene78608.t1 | AT1G24170 | 33.508 | 191 | 118 | 6 | 340 | 521 | 172 | 362 | 2.32e-23 | 102 |
| MS.gene78608.t1 | AT1G19300 | 32.292 | 192 | 119 | 6 | 340 | 521 | 150 | 340 | 1.16e-22 | 99.8 |
| MS.gene78608.t1 | AT3G06260 | 31.818 | 176 | 113 | 4 | 340 | 509 | 150 | 324 | 1.81e-22 | 99.4 |
| MS.gene78608.t1 | AT1G02720 | 32.632 | 190 | 120 | 5 | 340 | 521 | 165 | 354 | 8.83e-22 | 97.4 |
| MS.gene78608.t1 | AT1G02720 | 32.632 | 190 | 120 | 5 | 340 | 521 | 165 | 354 | 8.83e-22 | 97.4 |
| MS.gene78608.t1 | AT3G50760 | 31.915 | 188 | 117 | 5 | 340 | 517 | 136 | 322 | 2.99e-20 | 92.4 |
| MS.gene78608.t1 | AT1G13250 | 33.508 | 191 | 117 | 5 | 340 | 521 | 144 | 333 | 5.07e-20 | 92.0 |
| MS.gene78608.t1 | AT1G74088 | 51.899 | 79 | 31 | 1 | 151 | 229 | 26 | 97 | 5.07e-18 | 79.7 |
| MS.gene78608.t1 | AT1G74088 | 50.000 | 72 | 29 | 1 | 158 | 229 | 1 | 65 | 2.15e-14 | 68.6 |
Find 0 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGAAAAACTAATTTTAT+TGG | + | 16936:9891-9910 | MS.gene78608:intergenic | 10.0% |
| !! | ACATTAATTTAAATCTTGAT+TGG | + | 16936:7880-7899 | MS.gene78608:intergenic | 15.0% |
| !! | GTTTAGTAATAACAAAAATT+TGG | + | 16936:10126-10145 | MS.gene78608:intergenic | 15.0% |
| !! | TAAATTTCAATTCATTTATC+AGG | - | 16936:7926-7945 | MS.gene78608:CDS | 15.0% |
| !!! | CTTATAATTTTTGTTATAAG+TGG | - | 16936:8265-8284 | MS.gene78608:CDS | 15.0% |
| !! | AAATGTATTTACTCCAAATT+TGG | + | 16936:8034-8053 | MS.gene78608:intergenic | 20.0% |
| !! | AATCATGTTCTTTAACATTA+GGG | - | 16936:8423-8442 | MS.gene78608:CDS | 20.0% |
| !! | GTTCAGATTCATAATAAAAA+AGG | + | 16936:8396-8415 | MS.gene78608:intergenic | 20.0% |
| !!! | AAGATTTCTTGTTGTAAAAA+TGG | - | 16936:8476-8495 | MS.gene78608:CDS | 20.0% |
| !!! | GTAAATTCTACAACAATTTT+AGG | - | 16936:9118-9137 | MS.gene78608:CDS | 20.0% |
| !!! | TAGTATATAATTTGTGTTTC+TGG | - | 16936:8964-8983 | MS.gene78608:CDS | 20.0% |
| ! | AACATAATTACCATCAAGAT+CGG | - | 16936:7804-7823 | MS.gene78608:CDS | 25.0% |
| ! | AACTTGTCAAATGAACTAAA+TGG | + | 16936:8705-8724 | MS.gene78608:intergenic | 25.0% |
| ! | AATAACAATTTGATGTGAGA+GGG | - | 16936:8126-8145 | MS.gene78608:CDS | 25.0% |
| ! | AATGAAATTCTTCAACATTC+TGG | + | 16936:9992-10011 | MS.gene78608:intergenic | 25.0% |
| ! | ACTTGTCAAATGAACTAAAT+GGG | + | 16936:8704-8723 | MS.gene78608:intergenic | 25.0% |
| ! | AGAATGTAATATTACCAGAA+GGG | + | 16936:7840-7859 | MS.gene78608:intergenic | 25.0% |
| ! | AGAATGTTGAAGAATTTCAT+TGG | - | 16936:9991-10010 | MS.gene78608:intron | 25.0% |
| ! | ATAGCACATTCTTGAATATA+AGG | + | 16936:10704-10723 | MS.gene78608:intergenic | 25.0% |
| ! | ATCATGTTCTTTAACATTAG+GGG | - | 16936:8424-8443 | MS.gene78608:CDS | 25.0% |
| ! | CAATCATGTTCTTTAACATT+AGG | - | 16936:8422-8441 | MS.gene78608:CDS | 25.0% |
| ! | CGCAAAATCATGAATTTAAA+TGG | + | 16936:8355-8374 | MS.gene78608:intergenic | 25.0% |
| ! | TAGCACATTCTTGAATATAA+GGG | + | 16936:10703-10722 | MS.gene78608:intergenic | 25.0% |
| ! | TATATTCAAGAATGTGCTAT+AGG | - | 16936:10704-10723 | MS.gene78608:CDS | 25.0% |
| ! | TCTTGAAATCTTCATGAATA+TGG | - | 16936:8904-8923 | MS.gene78608:CDS | 25.0% |
| ! | TGTTATTACTAAACCATCTT+CGG | - | 16936:10132-10151 | MS.gene78608:intron | 25.0% |
| ! | TTAAAGAACATGATTGAAAC+TGG | + | 16936:8418-8437 | MS.gene78608:intergenic | 25.0% |
| ! | TTGAAAAGAGTAAAAAAGAG+AGG | + | 16936:8108-8127 | MS.gene78608:intergenic | 25.0% |
| ! | TTTCAATTCATTTATCAGGA+TGG | - | 16936:7930-7949 | MS.gene78608:CDS | 25.0% |
| ! | TTTCTCAGTAATGACTTTAA+AGG | - | 16936:9951-9970 | MS.gene78608:intron | 25.0% |
| !! | AAAGGATGAAAATTTTCCTA+AGG | - | 16936:9287-9306 | MS.gene78608:intron | 25.0% |
| !! | ATATCATTTCTGCATCTTTT+CGG | - | 16936:9809-9828 | MS.gene78608:intron | 25.0% |
| !! | ATGAAAATTTTCCTAAGGAT+AGG | - | 16936:9292-9311 | MS.gene78608:intron | 25.0% |
| !!! | ACTTCTTAGTTTTTATGGTT+TGG | - | 16936:10502-10521 | MS.gene78608:intron | 25.0% |
| !!! | ATGTTTTTGACTTGATTCAA+TGG | - | 16936:10390-10409 | MS.gene78608:intron | 25.0% |
| !!! | ATTTTGTCTGTATTTAAGAC+TGG | - | 16936:8057-8076 | MS.gene78608:CDS | 25.0% |
| !!! | GAGACAAAAATAGTTTTAAC+AGG | + | 16936:9214-9233 | MS.gene78608:intergenic | 25.0% |
| !!! | TCTACAACAATTTTAGGATT+AGG | - | 16936:9124-9143 | MS.gene78608:CDS | 25.0% |
| AAATGTACTTGGTCCAAATT+TGG | - | 16936:8018-8037 | MS.gene78608:CDS | 30.0% | |
| ACATAATTACCATCAAGATC+GGG | - | 16936:7805-7824 | MS.gene78608:CDS | 30.0% | |
| AGTTGTAACACAATCTAGAA+AGG | + | 16936:8771-8790 | MS.gene78608:intergenic | 30.0% | |
| ATGTGAAACTTACTTCTGAT+TGG | - | 16936:9715-9734 | MS.gene78608:intron | 30.0% | |
| CAATAACAATTTGATGTGAG+AGG | - | 16936:8125-8144 | MS.gene78608:CDS | 30.0% | |
| CAGAAGAAAATCAGAAACTA+TGG | + | 16936:8653-8672 | MS.gene78608:intergenic | 30.0% | |
| CCTTGAAGATTAAAGTTGAA+AGG | + | 16936:9542-9561 | MS.gene78608:intergenic | 30.0% | |
| CCTTTCAACTTTAATCTTCA+AGG | - | 16936:9539-9558 | MS.gene78608:intron | 30.0% | |
| CTCCTTCATATTAAAGCAAA+AGG | - | 16936:7993-8012 | MS.gene78608:CDS | 30.0% | |
| CTTATAGATAATCTCAACCA+TGG | + | 16936:10638-10657 | MS.gene78608:intergenic | 30.0% | |
| CTTGTCAAATGAACTAAATG+GGG | + | 16936:8703-8722 | MS.gene78608:intergenic | 30.0% | |
| GAGAATGTAATATTACCAGA+AGG | + | 16936:7841-7860 | MS.gene78608:intergenic | 30.0% | |
| GATTATCTATAAGCAGGTAT+AGG | - | 16936:10645-10664 | MS.gene78608:CDS | 30.0% | |
| GTTGAAAGGCTTCTTATAAT+CGG | + | 16936:9528-9547 | MS.gene78608:intergenic | 30.0% | |
| TAACGTGTTTGCTCAAATAT+CGG | - | 16936:9659-9678 | MS.gene78608:intron | 30.0% | |
| TAGTTGTTGCAATGTCATAA+TGG | + | 16936:9575-9594 | MS.gene78608:intergenic | 30.0% | |
| TTGCCAATAGTGATATATTG+CGG | + | 16936:10432-10451 | MS.gene78608:intergenic | 30.0% | |
| TTGTCAAATGAACTAAATGG+GGG | + | 16936:8702-8721 | MS.gene78608:intergenic | 30.0% | |
| TTGTTACTACTTTGTGAAAC+AGG | - | 16936:8516-8535 | MS.gene78608:CDS | 30.0% | |
| TTTATGTACTTGTTCCATAG+TGG | + | 16936:10671-10690 | MS.gene78608:intergenic | 30.0% | |
| ! | AAAACAATCTTCTCAAGTTG+TGG | + | 16936:10179-10198 | MS.gene78608:intergenic | 30.0% |
| ! | GACCTTTTGCTTTAATATGA+AGG | + | 16936:7998-8017 | MS.gene78608:intergenic | 30.0% |
| ! | GTTTTTCATATTGTAACCGA+CGG | - | 16936:9900-9919 | MS.gene78608:intron | 30.0% |
| !! | ATAGAAGTGCTGTAATAATG+AGG | + | 16936:8832-8851 | MS.gene78608:intergenic | 30.0% |
| !! | GTTGTTACTTGTTACACTTT+TGG | - | 16936:9174-9193 | MS.gene78608:intron | 30.0% |
| !! | TAGAAGTGCTGTAATAATGA+GGG | + | 16936:8831-8850 | MS.gene78608:intergenic | 30.0% |
| !!! | AATCTCGAGCCTTTTATTTT+GGG | - | 16936:10060-10079 | MS.gene78608:intron | 30.0% |
| !!! | TTTTTCAAGGCAATTAACAG+AGG | - | 16936:9350-9369 | MS.gene78608:intron | 30.0% |
| AAATAGTGACGTAGGAAACA+TGG | - | 16936:9025-9044 | MS.gene78608:CDS | 35.0% | |
| AAGGCAATTAACAGAGGAAA+TGG | - | 16936:9356-9375 | MS.gene78608:intron | 35.0% | |
| AAGGCTTCTTATAATCGGTT+CGG | + | 16936:9523-9542 | MS.gene78608:intergenic | 35.0% | |
| ACAATAATCTTCACCTAGCA+TGG | - | 16936:9415-9434 | MS.gene78608:intron | 35.0% | |
| AGCAAAAGGTCAAATGTACT+TGG | - | 16936:8007-8026 | MS.gene78608:CDS | 35.0% | |
| AGTTGAGTAATTGTCATTCG+AGG | - | 16936:8999-9018 | MS.gene78608:CDS | 35.0% | |
| ATCCTACAAGGAATTGTGAA+CGG | + | 16936:8627-8646 | MS.gene78608:intergenic | 35.0% | |
| CAAGTTGTGGATAAATCTCA+GGG | + | 16936:10166-10185 | MS.gene78608:intergenic | 35.0% | |
| CAATAATCTTCACCTAGCAT+GGG | - | 16936:9416-9435 | MS.gene78608:intron | 35.0% | |
| GAATTGCATGGAAACGTAAT+CGG | - | 16936:10251-10270 | MS.gene78608:intron | 35.0% | |
| GGTTGAGATTATCTATAAGC+AGG | - | 16936:10639-10658 | MS.gene78608:CDS | 35.0% | |
| GTAAAATTCAGCCTATCCTT+AGG | + | 16936:9306-9325 | MS.gene78608:intergenic | 35.0% | |
| GTATAACCATTTCGCAGAAT+GGG | + | 16936:8605-8624 | MS.gene78608:intergenic | 35.0% | |
| TGACCGCAATATATCACTAT+TGG | - | 16936:10426-10445 | MS.gene78608:intron | 35.0% | |
| TGAGTCGATTATCGATATTG+AGG | + | 16936:10574-10593 | MS.gene78608:intergenic | 35.0% | |
| TGCAATTCAAGTGAGAAAAG+TGG | + | 16936:10239-10258 | MS.gene78608:intergenic | 35.0% | |
| TGTAAGCAATGAAGACTCTT+CGG | + | 16936:9696-9715 | MS.gene78608:intergenic | 35.0% | |
| TGTTGTTGCAAGACTGAAAA+GGG | + | 16936:8863-8882 | MS.gene78608:intergenic | 35.0% | |
| TTTCAGTCTTGCAACAACAA+TGG | - | 16936:8864-8883 | MS.gene78608:CDS | 35.0% | |
| ! | ATATTACCAGAAGGGTATGT+TGG | + | 16936:7832-7851 | MS.gene78608:intergenic | 35.0% |
| ! | CATCTTTTCGGATAATGTAC+TGG | - | 16936:9821-9840 | MS.gene78608:intron | 35.0% |
| ! | CCATAAAAACTAAGAAGTGC+AGG | + | 16936:10500-10519 | MS.gene78608:intergenic | 35.0% |
| ! | CTTTTCTCACTTGAATTGCA+TGG | - | 16936:10239-10258 | MS.gene78608:intron | 35.0% |
| ! | TAAAAACTAAGAAGTGCAGG+AGG | + | 16936:10497-10516 | MS.gene78608:intergenic | 35.0% |
| ! | TAATCGACTCATTGAAAGTG+CGG | - | 16936:10583-10602 | MS.gene78608:CDS | 35.0% |
| ! | TATGGGATCTGTTTTCTTCT+TGG | - | 16936:7743-7762 | MS.gene78608:CDS | 35.0% |
| ! | TCAAGTTGTGGATAAATCTC+AGG | + | 16936:10167-10186 | MS.gene78608:intergenic | 35.0% |
| ! | TGTCTGTATTTAAGACTGGA+TGG | - | 16936:8061-8080 | MS.gene78608:CDS | 35.0% |
| ! | TGTTACCTTTTGCAGCTATT+AGG | - | 16936:8546-8565 | MS.gene78608:CDS | 35.0% |
| ! | TTGTTGTTGCAAGACTGAAA+AGG | + | 16936:8864-8883 | MS.gene78608:intergenic | 35.0% |
| !! | AAAGTGGTGTTAGGTCTTTT+TGG | + | 16936:10223-10242 | MS.gene78608:intergenic | 35.0% |
| !! | CCTGCACTTCTTAGTTTTTA+TGG | - | 16936:10497-10516 | MS.gene78608:intron | 35.0% |
| !! | GAATCTCGAGCCTTTTATTT+TGG | - | 16936:10059-10078 | MS.gene78608:intron | 35.0% |
| !! | TAAGTGCGACATCTTTTTCA+AGG | - | 16936:9337-9356 | MS.gene78608:intron | 35.0% |
| !!! | AGATGGCATGTTTTAGGATT+AGG | - | 16936:10542-10561 | MS.gene78608:intron | 35.0% |
| !!! | ATCTCGAGCCTTTTATTTTG+GGG | - | 16936:10061-10080 | MS.gene78608:intron | 35.0% |
| !!! | CTTTTATTTTGGGGCATATC+CGG | - | 16936:10070-10089 | MS.gene78608:intron | 35.0% |
| AAACTATGGCAGATCCTACA+AGG | + | 16936:8639-8658 | MS.gene78607:intergenic | 40.0% | |
| AAGCTCAAAGTTTGATCCAC+AGG | - | 16936:10343-10362 | MS.gene78608:intron | 40.0% | |
| ATCCTAAAACATGCCATCTC+CGG | + | 16936:10541-10560 | MS.gene78608:intergenic | 40.0% | |
| ATTCGACGGAAGTTGTCTTA+TGG | - | 16936:7725-7744 | MS.gene78608:CDS | 40.0% | |
| ATTGCAGGACAGGAATACAA+AGG | - | 16936:9269-9288 | MS.gene78608:intron | 40.0% | |
| CAAGTGAGAAAAGTGGTGTT+AGG | + | 16936:10232-10251 | MS.gene78608:intergenic | 40.0% | |
| CGGATATGCCCCAAAATAAA+AGG | + | 16936:10072-10091 | MS.gene78608:intergenic | 40.0% | |
| CGGCTGTTATTCACTTCAAT+GGG | - | 16936:10603-10622 | MS.gene78608:CDS | 40.0% | |
| GAACACCTAATAGCTGCAAA+AGG | + | 16936:8554-8573 | MS.gene78608:intergenic | 40.0% | |
| GGGTTTGAATTCATACAGAG+AGG | - | 16936:8444-8463 | MS.gene78608:CDS | 40.0% | |
| GGTATAACCATTTCGCAGAA+TGG | + | 16936:8606-8625 | MS.gene78608:intergenic | 40.0% | |
| TAAATGCTGAACCGAAACTG+CGG | - | 16936:10096-10115 | MS.gene78608:intron | 40.0% | |
| TAAGACAACTTCCGTCGAAT+CGG | + | 16936:7725-7744 | MS.gene78608:intergenic | 40.0% | |
| TAAGTGACATATTGCAGGAC+AGG | - | 16936:9259-9278 | MS.gene78608:intron | 40.0% | |
| TACCGTTCACAATTCCTTGT+AGG | - | 16936:8622-8641 | MS.gene78608:CDS | 40.0% | |
| TCAATGGGAACATGAAACCA+TGG | - | 16936:10618-10637 | MS.gene78608:CDS | 40.0% | |
| TGCAATAACCACATAAGCCT+TGG | + | 16936:9388-9407 | MS.gene78608:intergenic | 40.0% | |
| TTCGACGGAAGTTGTCTTAT+GGG | - | 16936:7726-7745 | MS.gene78608:CDS | 40.0% | |
| TTCGGTTCAGCATTTACATC+CGG | + | 16936:10092-10111 | MS.gene78608:intergenic | 40.0% | |
| ! | AATTTGGAGTTCCGCAGTTT+CGG | + | 16936:10110-10129 | MS.gene78608:intergenic | 40.0% |
| ! | CCTGCAATATGTCACTTACT+CGG | + | 16936:9257-9276 | MS.gene78608:intergenic | 40.0% |
| ! | CTTTAAAGGAGCAACGATAG+AGG | - | 16936:9965-9984 | MS.gene78608:intron | 40.0% |
| ! | GATTGGTCGCATCTGATAAA+GGG | + | 16936:7863-7882 | MS.gene78608:intergenic | 40.0% |
| ! | GGATAATGTACTGGCAACAT+TGG | - | 16936:9830-9849 | MS.gene78608:intron | 40.0% |
| ! | TGATTGGTCGCATCTGATAA+AGG | + | 16936:7864-7883 | MS.gene78608:intergenic | 40.0% |
| !! | AGCATTTTCTGTTGTCGGTT+TGG | - | 16936:7766-7785 | MS.gene78608:CDS | 40.0% |
| !! | CTTGGAGCATTTTCTGTTGT+CGG | - | 16936:7761-7780 | MS.gene78608:CDS | 40.0% |
| !! | TTCTGTTGTCGGTTTGGTTA+TGG | - | 16936:7772-7791 | MS.gene78608:CDS | 40.0% |
| AAGACAACTTCCGTCGAATC+GGG | + | 16936:7724-7743 | MS.gene78608:intergenic | 45.0% | |
| ACCAAGACAAGTCTAACTGC+AGG | + | 16936:8210-8229 | MS.gene78608:intergenic | 45.0% | |
| ACCTTCCCTGCAAAAACTCT+CGG | - | 16936:9746-9765 | MS.gene78608:intron | 45.0% | |
| ACTATGGAACGATGCAAGCA+TGG | - | 16936:9928-9947 | MS.gene78608:intron | 45.0% | |
| AGAGGAAATGGTTCTTGCCA+AGG | - | 16936:9368-9387 | MS.gene78608:intron | 45.0% | |
| ATAGATGCTGATCCGTTAGC+CGG | + | 16936:9791-9810 | MS.gene78608:intergenic | 45.0% | |
| CAGGGATGTAAAACCGAAGA+TGG | + | 16936:10148-10167 | MS.gene78608:intergenic | 45.0% | |
| CCGAGTAAGTGACATATTGC+AGG | - | 16936:9254-9273 | MS.gene78608:intron | 45.0% | |
| CCTGTGAAATGCTTCAAGAC+AGG | + | 16936:10288-10307 | MS.gene78608:intergenic | 45.0% | |
| CGAGGCTTAAATAGTGACGT+AGG | - | 16936:9017-9036 | MS.gene78608:CDS | 45.0% | |
| GACTGGAAAGCCTGTTAACA+AGG | - | 16936:9491-9510 | MS.gene78608:intron | 45.0% | |
| GCGGCTGTTATTCACTTCAA+TGG | - | 16936:10602-10621 | MS.gene78608:CDS | 45.0% | |
| GGACAACAACATCGTCATCA+AGG | + | 16936:10202-10221 | MS.gene78608:intergenic | 45.0% | |
| GTTAACAGGCTTTCCAGTCA+TGG | + | 16936:9490-9509 | MS.gene78608:intergenic | 45.0% | |
| TAAGCAGGTATAGGCCACTA+TGG | - | 16936:10654-10673 | MS.gene78608:CDS | 45.0% | |
| TATGTTGGACCCGATCTTGA+TGG | + | 16936:7817-7836 | MS.gene78608:intergenic | 45.0% | |
| TCCTGCAGTTAGACTTGTCT+TGG | - | 16936:8206-8225 | MS.gene78608:CDS | 45.0% | |
| TCGAGCAGCTGTTTGACAAT+CGG | + | 16936:10035-10054 | MS.gene78608:intergenic | 45.0% | |
| TCGGCTTCTTCCTTGTTAAC+AGG | + | 16936:9504-9523 | MS.gene78608:intergenic | 45.0% | |
| TTACTCGGTAAGTACACACG+AGG | + | 16936:9242-9261 | MS.gene78608:intergenic | 45.0% | |
| ! | CCTGTCTTGAAGCATTTCAC+AGG | - | 16936:10285-10304 | MS.gene78608:intron | 45.0% |
| ! | CTCATCCGAGAGTTTTTGCA+GGG | + | 16936:9754-9773 | MS.gene78608:intergenic | 45.0% |
| ! | TCTCATCCGAGAGTTTTTGC+AGG | + | 16936:9755-9774 | MS.gene78608:intergenic | 45.0% |
| AACAGGCTTTCCAGTCATGG+CGG | + | 16936:9487-9506 | MS.gene78608:intergenic | 50.0% | |
| AGAATGCCGATGGATCACTC+TGG | - | 16936:10456-10475 | MS.gene78608:intron | 50.0% | |
| ATGAGACGAGAAACTCCCTC+CGG | - | 16936:9769-9788 | MS.gene78608:intron | 50.0% | |
| CGTTCCATAGTTGACACCGT+CGG | + | 16936:9919-9938 | MS.gene78608:intergenic | 50.0% | |
| CTTTCAAAAGCCGCCATGAC+TGG | - | 16936:9474-9493 | MS.gene78608:intron | 50.0% | |
| GAGCTTCCAGAGTGATCCAT+CGG | + | 16936:10465-10484 | MS.gene78608:intergenic | 50.0% | |
| GCACATCCCATTCTGCGAAA+TGG | - | 16936:8596-8615 | MS.gene78608:CDS | 50.0% | |
| GGTTCTTGCCAAGGCTTATG+TGG | - | 16936:9377-9396 | MS.gene78608:intron | 50.0% | |
| TGGCAAGAGAAGAATGCCGA+TGG | - | 16936:10446-10465 | MS.gene78608:intron | 50.0% | |
| TTGAGCTAAGCTCCCATGCT+AGG | + | 16936:9431-9450 | MS.gene78608:intergenic | 50.0% | |
| ! | GACCGGAGATGGCATGTTTT+AGG | - | 16936:10536-10555 | MS.gene78608:intron | 50.0% |
| ! | GATGGATCACTCTGGAAGCT+CGG | - | 16936:10464-10483 | MS.gene78608:intron | 50.0% |
| ! | GTAACCGACGGTGTCAACTA+TGG | - | 16936:9912-9931 | MS.gene78608:intron | 50.0% |
| ! | TCCGAGAGTTTTTGCAGGGA+AGG | + | 16936:9750-9769 | MS.gene78608:intergenic | 50.0% |
| ACATGCCATCTCCGGTCAAG+CGG | + | 16936:10533-10552 | MS.gene78608:intergenic | 55.0% | |
| ATGCTGATCCGTTAGCCGGA+GGG | + | 16936:9787-9806 | MS.gene78608:intergenic | 55.0% | |
| GAGAAACTCCCTCCGGCTAA+CGG | - | 16936:9776-9795 | MS.gene78608:intron | 55.0% | |
| TCGGGTCCAACATACCCTTC+TGG | - | 16936:7823-7842 | MS.gene78608:CDS | 55.0% | |
| AATGACCACGCGCATGCCTG+TGG | + | 16936:10362-10381 | MS.gene78608:intergenic | 60.0% | |
| CAGGCATGCGCGTGGTCATT+AGG | - | 16936:10362-10381 | MS.gene78608:intron | 60.0% | |
| CCATCTCCGGTCAAGCGGTT+CGG | + | 16936:10528-10547 | MS.gene78608:intergenic | 60.0% | |
| GATGCTGATCCGTTAGCCGG+AGG | + | 16936:9788-9807 | MS.gene78608:intergenic | 60.0% | |
| GTTTGGCCGAACCGCTTGAC+CGG | - | 16936:10519-10538 | MS.gene78608:intron | 60.0% | |
| TTGATCCACAGGCATGCGCG+TGG | - | 16936:10354-10373 | MS.gene78608:intron | 60.0% | |
| ! | AGTTTCGGCGCCCGATTCGA+CGG | - | 16936:7711-7730 | MS.gene78608:CDS | 60.0% |
| CCGAACCGCTTGACCGGAGA+TGG | - | 16936:10525-10544 | MS.gene78608:intron | 65.0% | |
| ! | GGCGTCGGGCTGCTGAGTTT+CGG | - | 16936:7696-7715 | MS.gene78608:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 16936 | gene | 7692 | 10730 | 7692 | ID=MS.gene78608 |
| 16936 | mRNA | 7692 | 10730 | 7692 | ID=MS.gene78608.t1;Parent=MS.gene78608 |
| 16936 | exon | 10578 | 10730 | 10578 | ID=MS.gene78608.t1.exon1;Parent=MS.gene78608.t1 |
| 16936 | CDS | 10578 | 10730 | 10578 | ID=cds.MS.gene78608.t1;Parent=MS.gene78608.t1 |
| 16936 | exon | 7692 | 9146 | 7692 | ID=MS.gene78608.t1.exon2;Parent=MS.gene78608.t1 |
| 16936 | CDS | 7692 | 9146 | 7692 | ID=cds.MS.gene78608.t1;Parent=MS.gene78608.t1 |
| Gene Sequence |
| Protein sequence |
