AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78689

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78689.t1 MTR_4g045707 89.433 388 39 1 1 388 1 386 0.0 698
MS.gene78689.t1 MTR_3g101010 72.165 388 107 1 1 388 1 387 0.0 540
MS.gene78689.t1 MTR_8g027395 69.010 384 115 1 6 389 17 396 0.0 526
MS.gene78689.t1 MTR_3g018740 67.792 385 121 2 5 388 4 386 0.0 516
MS.gene78689.t1 MTR_3g048000 66.146 384 109 3 7 389 28 391 4.37e-180 506
MS.gene78689.t1 MTR_3g101030 65.491 397 115 6 11 388 34 427 5.90e-174 492
MS.gene78689.t1 MTR_8g461160 62.469 397 135 4 1 388 1 392 4.61e-168 476
MS.gene78689.t1 MTR_2g046030 63.753 389 130 4 5 388 4 386 4.69e-168 476
MS.gene78689.t1 MTR_4g088525 65.395 367 117 2 25 388 8 367 8.23e-168 474
MS.gene78689.t1 MTR_3g101180 60.401 399 148 3 1 389 1 399 3.00e-166 471
MS.gene78689.t1 MTR_7g451890 62.016 387 143 2 6 388 14 400 3.12e-166 471
MS.gene78689.t1 MTR_8g027420 63.281 384 126 3 6 389 6 374 3.26e-166 471
MS.gene78689.t1 MTR_2g045980 63.496 389 131 4 5 388 4 386 6.35e-166 470
MS.gene78689.t1 MTR_7g050750 61.856 388 144 2 5 388 7 394 4.77e-165 468
MS.gene78689.t1 MTR_7g047780 62.791 387 140 2 6 388 14 400 1.06e-164 468
MS.gene78689.t1 MTR_4g088535 60.914 394 134 4 4 397 5 378 2.83e-161 458
MS.gene78689.t1 MTR_3g101130 59.288 393 151 4 1 389 1 388 2.99e-160 456
MS.gene78689.t1 MTR_7g050810 61.125 391 140 4 6 388 16 402 9.14e-160 455
MS.gene78689.t1 MTR_3g101050 61.818 385 120 5 10 388 33 396 2.38e-151 434
MS.gene78689.t1 MTR_3g102920 59.487 390 118 5 4 389 56 409 2.31e-147 424
MS.gene78689.t1 MTR_3g015620 58.290 386 135 3 6 388 16 378 3.11e-139 402
MS.gene78689.t1 MTR_3g101200 54.082 392 151 6 1 389 26 391 4.52e-129 377
MS.gene78689.t1 MTR_3g100995 67.059 255 81 2 134 388 11 262 7.38e-120 348
MS.gene78689.t1 MTR_3g101190 50.959 365 116 3 25 389 10 311 1.12e-117 345
MS.gene78689.t1 MTR_3g018747 66.923 260 70 3 130 388 9 253 1.07e-113 332
MS.gene78689.t1 MTR_3g100010 55.949 311 89 2 31 308 42 337 2.91e-107 319
MS.gene78689.t1 MTR_7g050830 52.381 315 117 3 6 298 16 319 3.69e-103 308
MS.gene78689.t1 MTR_3g015760 60.967 269 99 4 122 388 15 279 1.73e-99 297
MS.gene78689.t1 MTR_3g111160 70.192 208 59 3 182 388 13 218 6.12e-90 271
MS.gene78689.t1 MTR_3g100520 61.991 221 69 3 171 389 1 208 2.25e-89 269
MS.gene78689.t1 MTR_3g114310 40.816 392 209 11 11 387 24 407 6.64e-86 267
MS.gene78689.t1 MTR_2g046410 65.217 207 64 3 187 388 144 347 1.71e-85 264
MS.gene78689.t1 MTR_3g099970 67.347 196 47 3 130 325 20 198 2.01e-85 258
MS.gene78689.t1 MTR_3g101110 53.975 239 80 3 130 364 68 280 3.87e-78 243
MS.gene78689.t1 MTR_3g101020 57.838 185 51 2 204 388 1 158 1.17e-64 204
MS.gene78689.t1 MTR_3g101150 65.823 158 50 3 236 389 1 158 1.01e-62 199
MS.gene78689.t1 MTR_3g111150 57.062 177 52 1 8 184 1 153 2.18e-59 191
MS.gene78689.t1 MTR_3g102870 58.442 154 64 0 193 346 1 154 1.72e-56 183
MS.gene78689.t1 MTR_3g100990 57.419 155 64 1 4 158 3 155 1.16e-47 170
MS.gene78689.t1 MTR_4g093550 64.286 84 30 0 6 89 6 89 1.79e-28 107
MS.gene78689.t1 MTR_6g046890 57.143 84 33 1 14 97 7 87 3.77e-20 86.3
MS.gene78689.t1 MTR_3g101140 54.545 88 34 3 306 388 28 114 6.51e-19 82.0
MS.gene78689.t1 MTR_3g101080 81.250 32 6 0 349 380 8 39 9.16e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78689.t1 AT1G47710 54.005 387 175 3 5 388 4 390 5.17e-148 425
MS.gene78689.t1 AT1G47710 54.005 387 175 3 5 388 31 417 2.42e-147 424
MS.gene78689.t1 AT2G25240 48.320 387 186 7 6 387 5 382 6.72e-118 348
MS.gene78689.t1 AT3G45220 45.663 392 197 5 6 387 5 390 6.47e-115 341
MS.gene78689.t1 AT2G26390 46.329 395 186 8 6 387 5 386 1.86e-110 329
MS.gene78689.t1 AT1G64030 43.590 390 191 6 5 387 4 371 5.56e-99 300
MS.gene78689.t1 AT2G14540 44.845 388 187 6 5 387 32 397 6.32e-99 300
MS.gene78689.t1 AT1G62170 42.159 389 195 5 6 387 66 431 6.83e-98 298
MS.gene78689.t1 AT1G62170 38.863 422 195 6 6 387 66 464 7.97e-91 281
MS.gene78689.t1 AT2G35580 43.360 369 177 9 29 387 25 371 3.54e-88 272
MS.gene78689.t1 AT1G64010 49.550 222 88 5 171 391 1 199 6.58e-62 198
MS.gene78689.t1 AT1G64010 49.275 207 81 5 186 391 2 185 2.67e-55 181
MS.gene78689.t1 AT1G62160 45.055 182 75 3 208 387 60 218 6.54e-34 126
MS.gene78689.t1 AT1G63280 53.913 115 49 2 130 242 8 120 5.84e-33 120
MS.gene78689.t1 AT1G51330 50.450 111 52 2 129 236 30 140 4.81e-25 101
MS.gene78689.t1 AT1G64020 38.983 118 65 4 7 120 6 120 3.21e-18 80.5

Find 100 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATGCACTGTACTTTAA+AGG 0.110889 3.2:-84183258 MS.gene78689:CDS
CCAAGGTTCAATGTCTCATT+TGG 0.239058 3.2:-84182928 MS.gene78689:CDS
CAGTGCCTTCTTCGTTTACT+TGG 0.246075 3.2:+84182773 None:intergenic
CTTGAGAAAGATTAAACTTA+TGG 0.265790 3.2:+84182974 None:intergenic
TCATCTTGGCCCTGTTTATA+AGG 0.290119 3.2:+84183090 None:intergenic
TTACTTGGATGAAAGACTTT+TGG 0.294262 3.2:+84182788 None:intergenic
AAAATCATAGTCTTTAGTTT+TGG 0.306750 3.2:+84183209 None:intergenic
GAGACAAATGGACTTATTAA+AGG 0.310786 3.2:-84183327 MS.gene78689:CDS
AATCAGAAGAAAGAATCTTT+TGG 0.322237 3.2:+84183712 None:intergenic
ACACATTACATACCTTGTTC+TGG 0.335608 3.2:+84183661 None:intergenic
CACTGTACTTTAAAGGACTA+TGG 0.351189 3.2:-84183251 MS.gene78689:CDS
ACTTTGTCTTCCTTATAAAC+AGG 0.354807 3.2:-84183100 MS.gene78689:CDS
TCCCGGAGGTTTGACAAATA+TGG 0.372940 3.2:-84182854 MS.gene78689:CDS
CAAGGTTCAATGTCTCATTT+GGG 0.379500 3.2:-84182927 MS.gene78689:CDS
TCTGAGTAATCATACTAGAT+TGG 0.383520 3.2:-84182596 MS.gene78689:CDS
AGCAAAGAGGATCAATATAT+TGG 0.387919 3.2:-84183144 MS.gene78689:CDS
AACCCATGAATTGACTTCAT+TGG 0.393781 3.2:+84183356 None:intergenic
CACAATCCTCTTTGTTGGAC+AGG 0.397313 3.2:-84182632 MS.gene78689:CDS
ACCGGCACAATCCTCTTTGT+TGG 0.412739 3.2:-84182637 MS.gene78689:CDS
GTCGAGAAGTTGTTGCTTTG+TGG 0.421022 3.2:+84183887 None:intergenic
CTCAGCTTTGGTTGAAAAGG+TGG 0.438522 3.2:-84183019 MS.gene78689:CDS
AATCTTTCTCAAGTCAAAGT+AGG 0.444523 3.2:-84182964 MS.gene78689:CDS
CTCTGTCGCCAATGGTGTGT+GGG 0.444711 3.2:-84183766 MS.gene78689:CDS
GAAATCAACGGAAGCCAACT+TGG 0.444733 3.2:+84183683 None:intergenic
CACCATATTTGTCAAACCTC+CGG 0.448925 3.2:+84182852 None:intergenic
CGAAAACACGATGTTGTTGT+TGG 0.450424 3.2:+84183962 None:intergenic
TAGAGAATCGGCGGTCATCT+TGG 0.453950 3.2:+84183076 None:intergenic
TGACCAATGAAGTCAATTCA+TGG 0.453988 3.2:-84183359 MS.gene78689:CDS
CGAAGGGAGCAGAGTCTTTG+AGG 0.457996 3.2:+84183802 None:intergenic
CAACGGAAGCCAACTTGGCT+TGG 0.461840 3.2:+84183688 None:intergenic
ACTCTCAGCTTTGGTTGAAA+AGG 0.467571 3.2:-84183022 MS.gene78689:CDS
AAAACATGGACTCTCAGCTT+TGG 0.469650 3.2:-84183031 MS.gene78689:CDS
CTCAAAGACTCTGCTCCCTT+CGG 0.476884 3.2:-84183801 MS.gene78689:CDS
TGCATTTGCAAAGATGAGTC+TGG 0.477055 3.2:+84183272 None:intergenic
AAAGACTCTGCTCCCTTCGG+CGG 0.478699 3.2:-84183798 MS.gene78689:CDS
AAGACTCTGCTCCCTTCGGC+GGG 0.479210 3.2:-84183797 MS.gene78689:CDS
TCTCTTATTAGAAATAAGAA+TGG 0.482752 3.2:+84182667 None:intergenic
GATACTGAGAATAACTTGAA+TGG 0.484768 3.2:+84183932 None:intergenic
GTCAAACCTCCGGGAGAGAA+AGG 0.487910 3.2:+84182862 None:intergenic
CCTCGCCTCTCTGTCGCCAA+TGG 0.491467 3.2:-84183774 MS.gene78689:CDS
CTCTTATTAGAAATAAGAAT+GGG 0.494945 3.2:+84182668 None:intergenic
TTGTGAGTGAAACGTTGGTT+TGG 0.497834 3.2:+84184012 None:intergenic
AATATGGTGGACTCTCTTGA+AGG 0.499593 3.2:-84182838 MS.gene78689:CDS
GAATAAAGTACATAGAGAAT+CGG 0.509178 3.2:+84183064 None:intergenic
GGAAACAAGGCGAGAGGCGA+CGG 0.514177 3.2:+84183830 None:intergenic
TCCTCTTTGCTGCTCATGAA+CGG 0.518225 3.2:+84183156 None:intergenic
GTTGATCGATGGATTTGAAA+CGG 0.521172 3.2:+84183859 None:intergenic
AGGAGTTATTCAACCAGGGT+TGG 0.525626 3.2:-84183307 MS.gene78689:CDS
TTCTGATTTCCAAGCCAAGT+TGG 0.531191 3.2:-84183697 MS.gene78689:CDS
ACCATATTTGTCAAACCTCC+GGG 0.531907 3.2:+84182853 None:intergenic
ATCATCGCTGCTGGCTCTGA+GGG 0.534728 3.2:-84183912 MS.gene78689:CDS
TCTCTGTCGCCAATGGTGTG+TGG 0.539480 3.2:-84183767 MS.gene78689:CDS
TTCATCCAAGTAAACGAAGA+AGG 0.540994 3.2:-84182778 MS.gene78689:CDS
TTGTTCAACCCACACACCAT+TGG 0.548194 3.2:+84183758 None:intergenic
TATCATCGCTGCTGGCTCTG+AGG 0.548469 3.2:-84183913 MS.gene78689:CDS
TTCCGTTGATTTCCAGAACA+AGG 0.549589 3.2:-84183673 MS.gene78689:intron
AGAGAGGCGAGGCCCGCCGA+AGG 0.551697 3.2:+84183785 None:intergenic
CTAGTATGATTACTCAGAAG+AGG 0.555128 3.2:+84182601 None:intergenic
CTTTGAGGATGACGGAAACA+AGG 0.557585 3.2:+84183817 None:intergenic
CTTTGTCTTCCTTATAAACA+GGG 0.557682 3.2:-84183099 MS.gene78689:CDS
ACAAAGTCTAGTCGAGGACG+AGG 0.560984 3.2:+84182700 None:intergenic
ATTCTTCCAGATGCAAAACA+TGG 0.562696 3.2:-84183045 MS.gene78689:CDS
GACCAATGAAGTCAATTCAT+GGG 0.562924 3.2:-84183358 MS.gene78689:CDS
TATGCTATTGTGAGAGGCAA+GGG 0.564855 3.2:-84182733 MS.gene78689:CDS
TGAAACTTCTGATATGCTGA+AGG 0.568879 3.2:-84182902 MS.gene78689:CDS
GTTAAGTTGTTGACCAACCC+TGG 0.572779 3.2:+84183294 None:intergenic
AGAAAGGTAAAACCACTCCT+AGG 0.573426 3.2:+84182878 None:intergenic
ATTCTCAGTATCATCGCTGC+TGG 0.573481 3.2:-84183921 MS.gene78689:CDS
AGCAGAGTCTTTGAGGATGA+CGG 0.575024 3.2:+84183809 None:intergenic
CCAAATGAGACATTGAACCT+TGG 0.576402 3.2:+84182928 None:intergenic
CTATGCTATTGTGAGAGGCA+AGG 0.580929 3.2:-84182734 MS.gene78689:CDS
ATTAAAGGAGTTATTCAACC+AGG 0.584761 3.2:-84183312 MS.gene78689:CDS
AGCGATTGTGAGTGAAACGT+TGG 0.585010 3.2:+84184007 None:intergenic
TCTGATATGCTGAAGGACCT+AGG 0.594866 3.2:-84182895 MS.gene78689:CDS
GAGAGGCGAGGCCCGCCGAA+GGG 0.597472 3.2:+84183786 None:intergenic
CGGAGGTTTGACAAATATGG+TGG 0.603716 3.2:-84182851 MS.gene78689:CDS
TCCAACAAAGAGGATTGTGC+CGG 0.609638 3.2:+84182636 None:intergenic
GACGGAGTTGAGTTGATCGA+TGG 0.611829 3.2:+84183848 None:intergenic
CTTGCCTCTCACAATAGCAT+AGG 0.612056 3.2:+84182735 None:intergenic
AATAGCATAGGTTGCAGCAG+CGG 0.614189 3.2:+84182747 None:intergenic
TTAAAGGAGTTATTCAACCA+GGG 0.622511 3.2:-84183311 MS.gene78689:CDS
TACCTTGTTCTGGAAATCAA+CGG 0.624465 3.2:+84183671 None:intergenic
TCTCAATCGTAGCTCACTCA+AGG 0.625100 3.2:-84183181 MS.gene78689:CDS
AGTCTAGTCGAGGACGAGGA+GGG 0.627803 3.2:+84182704 None:intergenic
AAGTCTAGTCGAGGACGAGG+AGG 0.638727 3.2:+84182703 None:intergenic
GCAACCTATGCTATTGTGAG+AGG 0.638794 3.2:-84182739 MS.gene78689:CDS
TGAGCACCTGTCCAACAAAG+AGG 0.641694 3.2:+84182626 None:intergenic
GGTTGATCATCGATTTACGA+CGG 0.648349 3.2:+84184033 None:intergenic
TCCGTTCATGAGCAGCAAAG+AGG 0.648841 3.2:-84183157 MS.gene78689:CDS
TAAAGTACATAGAGAATCGG+CGG 0.649019 3.2:+84183067 None:intergenic
AGAATAACTTGAATGGAGAG+AGG 0.658718 3.2:+84183939 None:intergenic
TAGGTGACTTCAGAATTCCA+AGG 0.662092 3.2:-84182945 MS.gene78689:CDS
TTATTAGAAATAAGAATGGG+TGG 0.662615 3.2:+84182671 None:intergenic
TGAGTGAGCTACGATTGAGA+AGG 0.665831 3.2:+84183184 None:intergenic
GATGACGGAAACAAGGCGAG+AGG 0.683563 3.2:+84183824 None:intergenic
ACACACCATTGGCGACAGAG+AGG 0.687034 3.2:+84183769 None:intergenic
TCAGCTACAAAGTCTAGTCG+AGG 0.689387 3.2:+84182694 None:intergenic
TATGCTGAAGGACCTAGGAG+TGG 0.695951 3.2:-84182890 MS.gene78689:CDS
GATCGATGGATTTGAAACGG+AGG 0.718521 3.2:+84183862 None:intergenic
CCATTGGCGACAGAGAGGCG+AGG 0.720718 3.2:+84183774 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAATAATTAGAAACAATT+CGG + chr3.2:84183072-84183091 None:intergenic 15.0%
!!! GAAATTTGATATGAATTTTT+AGG - chr3.2:84183235-84183254 MS.gene78689:CDS 15.0%
!! ATGTTGCTAATTAAATTAGT+TGG + chr3.2:84183158-84183177 None:intergenic 20.0%
!! CTCTTATTAGAAATAAGAAT+GGG + chr3.2:84183961-84183980 None:intergenic 20.0%
!! TCAATAATTAGAAACAATTC+GGG + chr3.2:84183071-84183090 None:intergenic 20.0%
!! TCTCTTATTAGAAATAAGAA+TGG + chr3.2:84183962-84183981 None:intergenic 20.0%
!! TTGGATGTTAAAAAACAATA+AGG + chr3.2:84183139-84183158 None:intergenic 20.0%
!!! AAAATCATAGTCTTTAGTTT+TGG + chr3.2:84183420-84183439 None:intergenic 20.0%
! ACGAAACAATAAGAATAAGA+AGG + chr3.2:84183014-84183033 None:intergenic 25.0%
! CTTGAGAAAGATTAAACTTA+TGG + chr3.2:84183655-84183674 None:intergenic 25.0%
! GAATAAAGTACATAGAGAAT+CGG + chr3.2:84183565-84183584 None:intergenic 25.0%
! TTATTAGAAATAAGAATGGG+TGG + chr3.2:84183958-84183977 None:intergenic 25.0%
! TTTCGTTTCGTATCAAATTA+GGG - chr3.2:84183028-84183047 MS.gene78689:CDS 25.0%
!! AAGGTATGTAATGTGTTTTA+GGG - chr3.2:84182972-84182991 MS.gene78689:CDS 25.0%
!! AATCAGAAGAAAGAATCTTT+TGG + chr3.2:84182917-84182936 None:intergenic 25.0%
!! CTAATAAGAGAAGATTTTAC+CGG - chr3.2:84183971-84183990 MS.gene78689:CDS 25.0%
AAACAATTCGGGAATGTTAT+TGG + chr3.2:84183060-84183079 None:intergenic 30.0%
AATAAGAAGGTAAGCAATTG+AGG + chr3.2:84183001-84183020 None:intergenic 30.0%
AATCTTTCTCAAGTCAAAGT+AGG - chr3.2:84183662-84183681 MS.gene78689:intron 30.0%
ACTTTGTCTTCCTTATAAAC+AGG - chr3.2:84183526-84183545 MS.gene78689:intron 30.0%
AGCAAAGAGGATCAATATAT+TGG - chr3.2:84183482-84183501 MS.gene78689:intron 30.0%
ATTAAAGGAGTTATTCAACC+AGG - chr3.2:84183314-84183333 MS.gene78689:CDS 30.0%
CTTTGTCTTCCTTATAAACA+GGG - chr3.2:84183527-84183546 MS.gene78689:intron 30.0%
GATACTGAGAATAACTTGAA+TGG + chr3.2:84182697-84182716 None:intergenic 30.0%
GTTTCGTTTCGTATCAAATT+AGG - chr3.2:84183027-84183046 MS.gene78689:CDS 30.0%
TCTGAGTAATCATACTAGAT+TGG - chr3.2:84184030-84184049 MS.gene78689:CDS 30.0%
TTAAAGGAGTTATTCAACCA+GGG - chr3.2:84183315-84183334 MS.gene78689:CDS 30.0%
! AGAAGAAAGAATCTTTTGGA+AGG + chr3.2:84182913-84182932 None:intergenic 30.0%
! CAAGGTATGTAATGTGTTTT+AGG - chr3.2:84182971-84182990 MS.gene78689:CDS 30.0%
! GAGACAAATGGACTTATTAA+AGG - chr3.2:84183299-84183318 MS.gene78689:CDS 30.0%
! TTACTTGGATGAAAGACTTT+TGG + chr3.2:84183841-84183860 None:intergenic 30.0%
!! CAATATATTGGTGCTTTTGA+TGG - chr3.2:84183494-84183513 MS.gene78689:intron 30.0%
!!! GAAAGACTTTTGGAATATCT+TGG + chr3.2:84183831-84183850 None:intergenic 30.0%
AATTCGGGAATGTTATTGGT+AGG + chr3.2:84183056-84183075 None:intergenic 35.0%
ACACATTACATACCTTGTTC+TGG + chr3.2:84182968-84182987 None:intergenic 35.0%
AGAATAACTTGAATGGAGAG+AGG + chr3.2:84182690-84182709 None:intergenic 35.0%
ATTCTTCCAGATGCAAAACA+TGG - chr3.2:84183581-84183600 MS.gene78689:intron 35.0%
CAAGGTTCAATGTCTCATTT+GGG - chr3.2:84183699-84183718 MS.gene78689:CDS 35.0%
CTAGTATGATTACTCAGAAG+AGG + chr3.2:84184028-84184047 None:intergenic 35.0%
GACCAATGAAGTCAATTCAT+GGG - chr3.2:84183268-84183287 MS.gene78689:CDS 35.0%
GCAAATGCACTGTACTTTAA+AGG - chr3.2:84183368-84183387 MS.gene78689:CDS 35.0%
TAAAGTACATAGAGAATCGG+CGG + chr3.2:84183562-84183581 None:intergenic 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr3.2:84183724-84183743 MS.gene78689:CDS 35.0%
TGACCAATGAAGTCAATTCA+TGG - chr3.2:84183267-84183286 MS.gene78689:CDS 35.0%
TTCATCCAAGTAAACGAAGA+AGG - chr3.2:84183848-84183867 MS.gene78689:CDS 35.0%
! AACCCATGAATTGACTTCAT+TGG + chr3.2:84183273-84183292 None:intergenic 35.0%
! CACTGTACTTTAAAGGACTA+TGG - chr3.2:84183375-84183394 MS.gene78689:intron 35.0%
! GTTGATCGATGGATTTGAAA+CGG + chr3.2:84182770-84182789 None:intergenic 35.0%
! TGGGTTGAAAAAGAGACAAA+TGG - chr3.2:84183287-84183306 MS.gene78689:CDS 35.0%
!! TACCTTGTTCTGGAAATCAA+CGG + chr3.2:84182958-84182977 None:intergenic 35.0%
AAAACATGGACTCTCAGCTT+TGG - chr3.2:84183595-84183614 MS.gene78689:intron 40.0%
ACCATATTTGTCAAACCTCC+GGG + chr3.2:84183776-84183795 None:intergenic 40.0%
AGAAAGGTAAAACCACTCCT+AGG + chr3.2:84183751-84183770 None:intergenic 40.0%
CACCATATTTGTCAAACCTC+CGG + chr3.2:84183777-84183796 None:intergenic 40.0%
CCAAATGAGACATTGAACCT+TGG + chr3.2:84183701-84183720 None:intergenic 40.0%
CCAAGGTTCAATGTCTCATT+TGG - chr3.2:84183698-84183717 MS.gene78689:CDS 40.0%
CGAAAACACGATGTTGTTGT+TGG + chr3.2:84182667-84182686 None:intergenic 40.0%
TAGGTGACTTCAGAATTCCA+AGG - chr3.2:84183681-84183700 MS.gene78689:CDS 40.0%
TATGCTATTGTGAGAGGCAA+GGG - chr3.2:84183893-84183912 MS.gene78689:CDS 40.0%
TCATCTTGGCCCTGTTTATA+AGG + chr3.2:84183539-84183558 None:intergenic 40.0%
TGCATTTGCAAAGATGAGTC+TGG + chr3.2:84183357-84183376 None:intergenic 40.0%
TTCTGATTTCCAAGCCAAGT+TGG - chr3.2:84182929-84182948 MS.gene78689:CDS 40.0%
! ACTCTCAGCTTTGGTTGAAA+AGG - chr3.2:84183604-84183623 MS.gene78689:intron 40.0%
! TTGTGAGTGAAACGTTGGTT+TGG + chr3.2:84182617-84182636 None:intergenic 40.0%
!! AATATGGTGGACTCTCTTGA+AGG - chr3.2:84183788-84183807 MS.gene78689:CDS 40.0%
!! GGTTGATCATCGATTTACGA+CGG + chr3.2:84182596-84182615 None:intergenic 40.0%
!! TTCCGTTGATTTCCAGAACA+AGG - chr3.2:84182953-84182972 MS.gene78689:CDS 40.0%
AATAGCATAGGTTGCAGCAG+CGG + chr3.2:84183882-84183901 None:intergenic 45.0%
AGCGATTGTGAGTGAAACGT+TGG + chr3.2:84182622-84182641 None:intergenic 45.0%
AGGAGTTATTCAACCAGGGT+TGG - chr3.2:84183319-84183338 MS.gene78689:CDS 45.0%
ATTCTCAGTATCATCGCTGC+TGG - chr3.2:84182705-84182724 MS.gene78689:CDS 45.0%
CACAATCCTCTTTGTTGGAC+AGG - chr3.2:84183994-84184013 MS.gene78689:CDS 45.0%
CAGTGCCTTCTTCGTTTACT+TGG + chr3.2:84183856-84183875 None:intergenic 45.0%
CGGAGGTTTGACAAATATGG+TGG - chr3.2:84183775-84183794 MS.gene78689:CDS 45.0%
CTATGCTATTGTGAGAGGCA+AGG - chr3.2:84183892-84183911 MS.gene78689:CDS 45.0%
CTTGCCTCTCACAATAGCAT+AGG + chr3.2:84183894-84183913 None:intergenic 45.0%
GAAATCAACGGAAGCCAACT+TGG + chr3.2:84182946-84182965 None:intergenic 45.0%
GCAACCTATGCTATTGTGAG+AGG - chr3.2:84183887-84183906 MS.gene78689:CDS 45.0%
TCAGCTACAAAGTCTAGTCG+AGG + chr3.2:84183935-84183954 None:intergenic 45.0%
TCCAACAAAGAGGATTGTGC+CGG + chr3.2:84183993-84184012 None:intergenic 45.0%
TCCCGGAGGTTTGACAAATA+TGG - chr3.2:84183772-84183791 MS.gene78689:CDS 45.0%
TCCTCTTTGCTGCTCATGAA+CGG + chr3.2:84183473-84183492 None:intergenic 45.0%
TCTCAATCGTAGCTCACTCA+AGG - chr3.2:84183445-84183464 MS.gene78689:intron 45.0%
TCTGATATGCTGAAGGACCT+AGG - chr3.2:84183731-84183750 MS.gene78689:CDS 45.0%
TGAGTGAGCTACGATTGAGA+AGG + chr3.2:84183445-84183464 None:intergenic 45.0%
TTGTTCAACCCACACACCAT+TGG + chr3.2:84182871-84182890 None:intergenic 45.0%
! AGCAGAGTCTTTGAGGATGA+CGG + chr3.2:84182820-84182839 None:intergenic 45.0%
! CTCAGCTTTGGTTGAAAAGG+TGG - chr3.2:84183607-84183626 MS.gene78689:intron 45.0%
! GAGAGTCCATGTTTTGCATC+TGG + chr3.2:84183590-84183609 None:intergenic 45.0%
! GATCGATGGATTTGAAACGG+AGG + chr3.2:84182767-84182786 None:intergenic 45.0%
! GTTAAGTTGTTGACCAACCC+TGG + chr3.2:84183335-84183354 None:intergenic 45.0%
!! CTTTGAGGATGACGGAAACA+AGG + chr3.2:84182812-84182831 None:intergenic 45.0%
!! GTCGAGAAGTTGTTGCTTTG+TGG + chr3.2:84182742-84182761 None:intergenic 45.0%
!! GTGGTTTTACCTTTCTCTCC+CGG - chr3.2:84183755-84183774 MS.gene78689:CDS 45.0%
ACAAAGTCTAGTCGAGGACG+AGG + chr3.2:84183929-84183948 None:intergenic 50.0%
ACCGGCACAATCCTCTTTGT+TGG - chr3.2:84183989-84184008 MS.gene78689:CDS 50.0%
CTCAAAGACTCTGCTCCCTT+CGG - chr3.2:84182825-84182844 MS.gene78689:CDS 50.0%
TAGAGAATCGGCGGTCATCT+TGG + chr3.2:84183553-84183572 None:intergenic 50.0%
TATGCTGAAGGACCTAGGAG+TGG - chr3.2:84183736-84183755 MS.gene78689:CDS 50.0%
TCCGTTCATGAGCAGCAAAG+AGG - chr3.2:84183469-84183488 MS.gene78689:intron 50.0%
TGAGCACCTGTCCAACAAAG+AGG + chr3.2:84184003-84184022 None:intergenic 50.0%
! GTTTTACCTTTCTCTCCCGG+AGG - chr3.2:84183758-84183777 MS.gene78689:CDS 50.0%
!! GACGGAGTTGAGTTGATCGA+TGG + chr3.2:84182781-84182800 None:intergenic 50.0%
AAAGACTCTGCTCCCTTCGG+CGG - chr3.2:84182828-84182847 MS.gene78689:CDS 55.0%
AAGTCTAGTCGAGGACGAGG+AGG + chr3.2:84183926-84183945 None:intergenic 55.0%
ACACACCATTGGCGACAGAG+AGG + chr3.2:84182860-84182879 None:intergenic 55.0%
AGTCTAGTCGAGGACGAGGA+GGG + chr3.2:84183925-84183944 None:intergenic 55.0%
CAACGGAAGCCAACTTGGCT+TGG + chr3.2:84182941-84182960 None:intergenic 55.0%
CGAAGGGAGCAGAGTCTTTG+AGG + chr3.2:84182827-84182846 None:intergenic 55.0%
CTCTGTCGCCAATGGTGTGT+GGG - chr3.2:84182860-84182879 MS.gene78689:CDS 55.0%
GTCAAACCTCCGGGAGAGAA+AGG + chr3.2:84183767-84183786 None:intergenic 55.0%
TCTCTGTCGCCAATGGTGTG+TGG - chr3.2:84182859-84182878 MS.gene78689:CDS 55.0%
!! ATCATCGCTGCTGGCTCTGA+GGG - chr3.2:84182714-84182733 MS.gene78689:CDS 55.0%
!! GATGACGGAAACAAGGCGAG+AGG + chr3.2:84182805-84182824 None:intergenic 55.0%
!! TATCATCGCTGCTGGCTCTG+AGG - chr3.2:84182713-84182732 MS.gene78689:CDS 55.0%
AAGACTCTGCTCCCTTCGGC+GGG - chr3.2:84182829-84182848 MS.gene78689:CDS 60.0%
GGAAACAAGGCGAGAGGCGA+CGG + chr3.2:84182799-84182818 None:intergenic 60.0%
CCATTGGCGACAGAGAGGCG+AGG + chr3.2:84182855-84182874 None:intergenic 65.0%
CCTCGCCTCTCTGTCGCCAA+TGG - chr3.2:84182852-84182871 MS.gene78689:CDS 65.0%
AGAGAGGCGAGGCCCGCCGA+AGG + chr3.2:84182844-84182863 None:intergenic 75.0%
GAGAGGCGAGGCCCGCCGAA+GGG + chr3.2:84182843-84182862 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 84182585 84184063 84182585 ID=MS.gene78689
chr3.2 mRNA 84182585 84184063 84182585 ID=MS.gene78689.t1;Parent=MS.gene78689
chr3.2 exon 84183674 84184063 84183674 ID=MS.gene78689.t1.exon1;Parent=MS.gene78689.t1
chr3.2 CDS 84183674 84184063 84183674 ID=cds.MS.gene78689.t1;Parent=MS.gene78689.t1
chr3.2 exon 84182585 84183391 84182585 ID=MS.gene78689.t1.exon2;Parent=MS.gene78689.t1
chr3.2 CDS 84182585 84183391 84182585 ID=cds.MS.gene78689.t1;Parent=MS.gene78689.t1
Gene Sequence

>MS.gene78689

ATGGATTTCCGTCGTAAATCGATGATCAACCAAACCAACGTTTCACTCACAATCGCTAAACATCTCTTCTCTAAACAGTCCAACAACAACATCGTGTTTTCGCCTCTCTCCATTCAAGTTATTCTCAGTATCATCGCTGCTGGCTCTGAGGGTACCACAAAGCAACAACTTCTCGACTTCCTCCGTTTCAAATCCATCGATCAACTCAACTCCGTCGCCTCTCGCCTTGTTTCCGTCATCCTCAAAGACTCTGCTCCCTTCGGCGGGCCTCGCCTCTCTGTCGCCAATGGTGTGTGGGTTGAACAAACACTCTCTCTTCAATCTTCCTTCCAAAAGATTCTTTCTTCTGATTTCCAAGCCAAGTTGGCTTCCGTTGATTTCCAGAACAAGGTATGTAATGTGTTTTAGGGTTTCCTCAATTGCTTACCTTCTTATTCTTATTGTTTCGTTTCGTATCAAATTAGGGTTCCTACCAATAACATTCCCGAATTGTTTCTAATTATTGATTCAATTCAAATTGACTTTAACTTGATTAAAATCAATCTTCATGTCCTTATTGTTTTTTAACATCCAACTAATTTAATTAGCAACATAATGAGTGATAGTTAGACTAACAAAAAGTTAAATTCTTTTACTGCATAATTTATTTTGAAATTTGATATGAATTTTTAGGCTATTGAAGTGACCAATGAAGTCAATTCATGGGTTGAAAAAGAGACAAATGGACTTATTAAAGGAGTTATTCAACCAGGGTTGGTCAACAACTTAACCAGACTCATCTTTGCAAATGCACTGTACTTTAAAGGACTATGGTATGACAAGTTTGATGCTTCCAAAACTAAAGACTATGATTTTCACCTTCTCAATCGTAGCTCACTCAAGGTTCCGTTCATGAGCAGCAAAGAGGATCAATATATTGGTGCTTTTGATGGTTTCAAAGTACTTTGTCTTCCTTATAAACAGGGCCAAGATGACCGCCGATTCTCTATGTACTTTATTCTTCCAGATGCAAAACATGGACTCTCAGCTTTGGTTGAAAAGGTGGCTTCTGAATCTGAGTTACTACACCATAAGTTTAATCTTTCTCAAGTCAAAGTAGGTGACTTCAGAATTCCAAGGTTCAATGTCTCATTTGGGTTTGAAACTTCTGATATGCTGAAGGACCTAGGAGTGGTTTTACCTTTCTCTCCCGGAGGTTTGACAAATATGGTGGACTCTCTTGAAGGTAAAGATCTTTATGTTTCCAAGATATTCCAAAAGTCTTTCATCCAAGTAAACGAAGAAGGCACTGAAGCCGCTGCTGCAACCTATGCTATTGTGAGAGGCAAGGGTATAAGCCCTCCTCGTCCTCGACTAGACTTTGTAGCTGACCACCCATTCTTATTTCTAATAAGAGAAGATTTTACCGGCACAATCCTCTTTGTTGGACAGGTGCTCAATCCTCTTCTGAGTAATCATACTAGATTGGATTGCCAATAG
Protein sequence

>MS.gene78689.t1

MDFRRKSMINQTNVSLTIAKHLFSKQSNNNIVFSPLSIQVILSIIAAGSEGTTKQQLLDFLRFKSIDQLNSVASRLVSVILKDSAPFGGPRLSVANGVWVEQTLSLQSSFQKILSSDFQAKLASVDFQNKAIEVTNEVNSWVEKETNGLIKGVIQPGLVNNLTRLIFANALYFKGLWYDKFDASKTKDYDFHLLNRSSLKVPFMSSKEDQYIGAFDGFKVLCLPYKQGQDDRRFSMYFILPDAKHGLSALVEKVASESELLHHKFNLSQVKVGDFRIPRFNVSFGFETSDMLKDLGVVLPFSPGGLTNMVDSLEGKDLYVSKIFQKSFIQVNEEGTEAAAATYAIVRGKGISPPRPRLDFVADHPFLFLIREDFTGTILFVGQVLNPLLSNHTRLDCQ