AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78691

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78691.t1 MTR_3g101030 70.504 417 102 6 16 412 13 428 0.0 575
MS.gene78691.t1 MTR_3g101010 75.907 386 88 3 30 412 5 388 0.0 571
MS.gene78691.t1 MTR_4g045707 69.588 388 113 3 27 412 3 387 0.0 537
MS.gene78691.t1 MTR_3g018740 71.429 385 104 3 30 411 5 386 0.0 532
MS.gene78691.t1 MTR_8g027395 68.750 384 113 3 30 411 17 395 0.0 523
MS.gene78691.t1 MTR_3g101050 70.277 397 93 8 23 412 19 397 0.0 518
MS.gene78691.t1 MTR_8g027420 68.229 384 104 4 30 411 6 373 0.0 509
MS.gene78691.t1 MTR_3g101130 64.844 384 131 2 30 411 6 387 7.24e-175 494
MS.gene78691.t1 MTR_3g101180 65.909 396 124 4 27 411 3 398 1.23e-173 491
MS.gene78691.t1 MTR_4g088525 67.486 366 110 4 49 411 8 367 3.52e-173 488
MS.gene78691.t1 MTR_7g451890 61.307 398 149 2 19 411 3 400 9.56e-172 486
MS.gene78691.t1 MTR_7g050750 61.675 394 146 2 23 411 1 394 5.80e-170 481
MS.gene78691.t1 MTR_7g050810 61.832 393 139 4 27 411 13 402 1.48e-168 478
MS.gene78691.t1 MTR_7g047780 60.804 398 151 2 19 411 3 400 2.28e-168 478
MS.gene78691.t1 MTR_8g461160 63.496 389 137 3 28 411 4 392 2.82e-168 477
MS.gene78691.t1 MTR_3g048000 61.330 406 127 6 15 411 6 390 6.06e-166 471
MS.gene78691.t1 MTR_2g045980 62.629 388 133 5 30 411 5 386 4.96e-164 466
MS.gene78691.t1 MTR_4g088535 63.185 383 118 4 28 408 5 366 1.38e-163 464
MS.gene78691.t1 MTR_2g046030 62.113 388 135 5 30 411 5 386 4.55e-163 464
MS.gene78691.t1 MTR_3g015620 60.546 403 125 7 14 411 5 378 1.15e-148 427
MS.gene78691.t1 MTR_3g101200 55.949 395 143 7 21 411 23 390 2.51e-140 406
MS.gene78691.t1 MTR_3g100995 74.206 252 65 0 160 411 11 262 2.55e-138 396
MS.gene78691.t1 MTR_3g102920 56.992 379 122 5 38 411 66 408 4.23e-135 393
MS.gene78691.t1 MTR_3g101190 55.556 360 96 4 54 411 13 310 3.95e-123 359
MS.gene78691.t1 MTR_3g018747 67.568 259 67 2 156 411 9 253 3.21e-118 345
MS.gene78691.t1 MTR_3g100010 53.889 360 108 5 21 343 4 342 1.13e-116 344
MS.gene78691.t1 MTR_7g050830 52.888 329 124 2 16 324 2 319 4.55e-112 332
MS.gene78691.t1 MTR_3g015760 61.733 277 103 3 137 411 4 279 1.32e-104 311
MS.gene78691.t1 MTR_3g101110 60.669 239 61 3 156 387 68 280 1.54e-91 278
MS.gene78691.t1 MTR_3g100520 63.470 219 64 3 197 411 1 207 1.91e-90 272
MS.gene78691.t1 MTR_3g114310 42.317 397 202 12 32 410 20 407 5.00e-89 276
MS.gene78691.t1 MTR_3g111160 66.667 207 65 2 208 411 13 218 1.85e-88 267
MS.gene78691.t1 MTR_3g099970 69.231 195 43 2 156 349 20 198 6.48e-87 263
MS.gene78691.t1 MTR_2g046410 61.463 205 72 3 213 411 144 347 4.22e-79 248
MS.gene78691.t1 MTR_3g101020 63.736 182 42 1 230 411 1 158 4.74e-75 231
MS.gene78691.t1 MTR_3g101150 65.605 157 47 3 262 411 1 157 2.38e-61 196
MS.gene78691.t1 MTR_3g111150 57.627 177 49 3 34 210 3 153 2.55e-57 186
MS.gene78691.t1 MTR_3g102870 56.442 163 64 2 219 374 1 163 6.14e-56 182
MS.gene78691.t1 MTR_3g100990 68.702 131 39 1 30 160 5 133 1.88e-49 175
MS.gene78691.t1 MTR_4g093550 68.966 87 25 1 29 115 5 89 2.57e-30 112
MS.gene78691.t1 MTR_3g101140 47.934 121 48 3 294 412 8 115 5.42e-22 90.9
MS.gene78691.t1 MTR_6g046890 52.679 112 33 4 51 142 18 129 1.48e-20 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78691.t1 AT1G47710 54.830 383 165 5 35 411 10 390 1.85e-147 424
MS.gene78691.t1 AT1G47710 54.830 383 165 5 35 411 37 417 8.67e-147 423
MS.gene78691.t1 AT3G45220 48.469 392 185 6 30 410 5 390 4.05e-127 372
MS.gene78691.t1 AT2G26390 47.970 394 180 7 30 410 5 386 2.57e-120 355
MS.gene78691.t1 AT2G25240 48.969 388 181 8 30 410 5 382 4.28e-120 354
MS.gene78691.t1 AT1G64030 43.896 385 190 6 34 412 9 373 5.15e-99 300
MS.gene78691.t1 AT2G14540 44.792 384 182 6 34 410 37 397 8.12e-96 293
MS.gene78691.t1 AT1G62170 41.803 366 183 5 53 410 88 431 8.24e-93 286
MS.gene78691.t1 AT2G35580 43.817 372 181 8 49 410 18 371 1.27e-92 284
MS.gene78691.t1 AT1G62170 38.346 399 183 6 53 410 88 464 6.72e-86 269
MS.gene78691.t1 AT1G64010 49.074 216 87 5 197 410 1 195 6.22e-63 201
MS.gene78691.t1 AT1G64010 48.259 201 81 5 212 410 2 181 2.08e-55 181
MS.gene78691.t1 AT1G63280 58.261 115 44 2 156 268 8 120 4.12e-38 134
MS.gene78691.t1 AT1G62160 36.239 218 114 5 198 410 21 218 6.43e-33 124
MS.gene78691.t1 AT1G51330 53.153 111 49 3 155 262 30 140 1.05e-25 103
MS.gene78691.t1 AT1G64020 32.743 113 73 3 35 146 10 120 1.15e-12 65.1

Find 95 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATGCACTGTACTTTAA+AGG 0.144123 3.2:+84140833 MS.gene78691:CDS
TGATTAATAAAGTGAATTTA+TGG 0.211117 3.2:+84140732 MS.gene78691:CDS
TTTGGAAGCATCAAACTTAT+TGG 0.242719 3.2:-84140864 None:intergenic
CTTCTTCTTGCTGATCATAA+AGG 0.256844 3.2:-84140936 None:intergenic
GGAAACGTTGGTTTGGTTAA+TGG 0.276967 3.2:-84140181 None:intergenic
GTCAGACCTCCATTAGTAAA+AGG 0.277817 3.2:-84141229 None:intergenic
TTATCTTTGCCTTGCTTATA+CGG 0.281478 3.2:-84141001 None:intergenic
GAAAGACTTGTGAAATATAT+TGG 0.284781 3.2:-84141287 None:intergenic
GAAGAAGTTTAGATGATAGA+TGG 0.319896 3.2:-84140358 None:intergenic
CTCTCTGATGCCGCTCCCTT+TGG 0.322428 3.2:+84140405 MS.gene78691:CDS
AAAATCATAGTCTTTCGTTT+TGG 0.334440 3.2:-84140882 None:intergenic
CATCATAGCTGCTGGATCTC+AGG 0.345380 3.2:+84140293 MS.gene78691:CDS
TAATGGAGGTCTGACTAAAA+TGG 0.358053 3.2:+84141237 MS.gene78691:CDS
ACCGGAACTGTCGTCTTTGT+TGG 0.377962 3.2:+84141445 MS.gene78691:CDS
GATTAATAAAGTGAATTTAT+GGG 0.381941 3.2:+84140733 MS.gene78691:CDS
CAACAACTTCTCGACTTCCT+TGG 0.381970 3.2:+84140327 MS.gene78691:CDS
TTGTTCAACCCACACACTAT+TGG 0.385574 3.2:-84140448 None:intergenic
CAAACTTCCATTTGTTAAAG+TGG 0.390173 3.2:+84141120 MS.gene78691:CDS
TTCTTCTTGCTGATCATAAA+GGG 0.399742 3.2:-84140935 None:intergenic
CAAATGAAATATTGAACCTT+GGG 0.407101 3.2:-84141162 None:intergenic
GGTTTGGTTAATGGCAGATT+GGG 0.427282 3.2:-84140172 None:intergenic
AACTGTCGTCTTTGTTGGAC+AGG 0.431215 3.2:+84141450 MS.gene78691:CDS
TCTGATATGCTGAAGGAGTT+AGG 0.433201 3.2:+84141196 MS.gene78691:CDS
GGCAGCCCGTCTTTAGCATC+TGG 0.437451 3.2:-84141052 None:intergenic
TGAAGGAAGGTTGAAGGGGA+AGG 0.438255 3.2:-84140473 None:intergenic
GTGTTGTATCAACTCAGTTT+CGG 0.441820 3.2:-84141098 None:intergenic
CCTACCTCCACTTTAACAAA+TGG 0.449735 3.2:-84141127 None:intergenic
CTCTGTTGCCAATAGTGTGT+GGG 0.456798 3.2:+84140440 MS.gene78691:CDS
GGACAGGTGCTCAATCCTCT+TGG 0.458320 3.2:+84141466 MS.gene78691:CDS
TCTGATGCCGCTCCCTTTGG+TGG 0.459258 3.2:+84140408 MS.gene78691:CDS
TTAAAGAAATTCTTCGTCAA+GGG 0.460026 3.2:+84140780 MS.gene78691:CDS
CTGGAGCAGTCGGCAGCTCC+AGG 0.463577 3.2:+84141356 MS.gene78691:CDS
TTCATTGAAGTAAACGAAGA+AGG 0.464021 3.2:+84141307 MS.gene78691:CDS
GAAGGAAGGTTGAAGGGGAA+GGG 0.464022 3.2:-84140472 None:intergenic
TCCAACAAAGACGACAGTTC+CGG 0.465222 3.2:-84141446 None:intergenic
AGTAGACACAGTTTCTTTGA+AGG 0.465284 3.2:-84140490 None:intergenic
CAAAGATGAGTCTGGTTAAG+TGG 0.470681 3.2:-84140811 None:intergenic
TGGTTTGGTTAATGGCAGAT+TGG 0.472763 3.2:-84140173 None:intergenic
TTTCTTTGAAGGAAGGTTGA+AGG 0.474955 3.2:-84140479 None:intergenic
GCTGCTGCGGTCACTATAGC+TGG 0.475236 3.2:+84141337 MS.gene78691:CDS
TGCATTTGCAAAGATGAGTC+TGG 0.477055 3.2:-84140819 None:intergenic
TCAAATGAAATATTGAACCT+TGG 0.481541 3.2:-84141163 None:intergenic
GTGCTCAGCATCATAGCTGC+TGG 0.482388 3.2:+84140285 MS.gene78691:CDS
CTATGATGCTGAGCACAACT+TGG 0.485939 3.2:-84140278 None:intergenic
GCGAGGACCACCAAAGGGAG+CGG 0.502275 3.2:-84140415 None:intergenic
TTCTTTGAAGGAAGGTTGAA+GGG 0.503893 3.2:-84140478 None:intergenic
ATTAAAGAAATTCTTCGTCA+AGG 0.506528 3.2:+84140779 MS.gene78691:CDS
TGGTGAGGGAAACGTTGGTT+TGG 0.507864 3.2:-84140188 None:intergenic
GGTTAATGGCAGATTGGGAT+CGG 0.516446 3.2:-84140167 None:intergenic
TATTCGAGTTGGAACAATCC+TGG 0.518259 3.2:-84141374 None:intergenic
TTCTTCCAGATGCTAAAGAC+GGG 0.519130 3.2:+84141047 MS.gene78691:CDS
GAAATATATTGGAAATACAA+AGG 0.530250 3.2:-84141276 None:intergenic
AGAGAGGCGAGGACCACCAA+AGG 0.532175 3.2:-84140421 None:intergenic
CCATTTGTTAAAGTGGAGGT+AGG 0.536690 3.2:+84141127 MS.gene78691:CDS
ATGATCAGAGAAGATTTGAC+CGG 0.538023 3.2:+84141427 MS.gene78691:CDS
GACACAGTTTCTTTGAAGGA+AGG 0.540665 3.2:-84140486 None:intergenic
AGCGGCATCAGAGAGGATGA+TGG 0.541979 3.2:-84140397 None:intergenic
TTTCTTCCAGATGCTAAAGA+CGG 0.548041 3.2:+84141046 MS.gene78691:CDS
ATCATAGCTGCTGGATCTCA+GGG 0.553300 3.2:+84140294 MS.gene78691:CDS
TTCCGTTGATTTCAAGAACA+AGG 0.553793 3.2:+84140533 MS.gene78691:CDS
CACTGTACTTTAAAGGAGCA+TGG 0.554893 3.2:+84140840 MS.gene78691:CDS
GGCGATGGTGAGGGAAACGT+TGG 0.556591 3.2:-84140193 None:intergenic
AGAAGGCACTGAGGCTGCTG+CGG 0.558311 3.2:+84141324 MS.gene78691:CDS
TGGGCTGAGAAAGAGACAAA+TGG 0.565306 3.2:+84140752 MS.gene78691:CDS
AGAAATTCTTCGTCAAGGGT+CGG 0.568942 3.2:+84140784 MS.gene78691:CDS
AAGTGGAGGTAGGTGACTTG+AGG 0.572019 3.2:+84141137 MS.gene78691:CDS
GCTACAAAGTCTATTCGAGT+TGG 0.573441 3.2:-84141385 None:intergenic
TACCTTGTTCTTGAAATCAA+CGG 0.574876 3.2:-84140535 None:intergenic
GTCGAGAAGTTGTTGTTGAG+TGG 0.576826 3.2:-84140319 None:intergenic
TCTTTGAAGGAAGGTTGAAG+GGG 0.577014 3.2:-84140477 None:intergenic
GTCACTATAGCTGGAGCAGT+CGG 0.586529 3.2:+84141346 MS.gene78691:CDS
AGCTGACGATGTTCATGTGT+GGG 0.587278 3.2:-84140132 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.594035 3.2:+84141189 MS.gene78691:CDS
CTTGGTCTTCCGTATAAGCA+AGG 0.596297 3.2:+84140992 MS.gene78691:CDS
GGCAACTTCTCAAGCAACGT+TGG 0.597920 3.2:-84141073 None:intergenic
TCTCTGTTGCCAATAGTGTG+TGG 0.608134 3.2:+84140439 MS.gene78691:CDS
TCTCAATGGCAGATCAGTCA+AGG 0.611695 3.2:+84140910 MS.gene78691:CDS
ATAGATGTTTGGCGATGGTG+AGG 0.612058 3.2:-84140203 None:intergenic
ACTTCCATTTGTTAAAGTGG+AGG 0.617944 3.2:+84141123 MS.gene78691:CDS
TGACTGATCTGCCATTGAGA+AGG 0.622914 3.2:-84140907 None:intergenic
GAGAGGCGAGGACCACCAAA+GGG 0.625024 3.2:-84140420 None:intergenic
TGTATCAACTCAGTTTCGGA+AGG 0.630650 3.2:-84141094 None:intergenic
TAGGTGACTTGAGGATCCCA+AGG 0.631375 3.2:+84141146 MS.gene78691:CDS
AGCACAACTTGGATTGAGAG+TGG 0.642348 3.2:-84140267 None:intergenic
TAGATGTTTGGCGATGGTGA+GGG 0.644133 3.2:-84140202 None:intergenic
TGTGAATAGATGTTTGGCGA+TGG 0.645801 3.2:-84140208 None:intergenic
GATAGATGGATTTAAAGCCA+AGG 0.649919 3.2:-84140344 None:intergenic
TAATGGCAGATTGGGATCGG+AGG 0.667018 3.2:-84140164 None:intergenic
TATGCTGAAGGAGTTAGGCG+TGG 0.677943 3.2:+84141201 MS.gene78691:CDS
AAGCTGACGATGTTCATGTG+TGG 0.681027 3.2:-84140133 None:intergenic
CAAAGGGAGCGGCATCAGAG+AGG 0.694948 3.2:-84140404 None:intergenic
GCTCGCCAAGATCATCCAAG+AGG 0.725110 3.2:-84141481 None:intergenic
ACACACTATTGGCAACAGAG+AGG 0.733111 3.2:-84140437 None:intergenic
CTATTGGCAACAGAGAGGCG+AGG 0.753182 3.2:-84140432 None:intergenic
AGTAAACGAAGAAGGCACTG+AGG 0.767944 3.2:+84141315 MS.gene78691:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAATAAAAAAATTA+GGG - chr3.2:84139797-84139816 None:intergenic 0.0%
!! TAATAAAAAATAAAAAAATT+AGG - chr3.2:84139798-84139817 None:intergenic 0.0%
!!! AAATGATATATTTTTTTGAA+TGG + chr3.2:84139673-84139692 MS.gene78691:intron 10.0%
!! GATTAATAAAGTGAATTTAT+GGG + chr3.2:84140733-84140752 MS.gene78691:CDS 15.0%
!! TGATTAATAAAGTGAATTTA+TGG + chr3.2:84140732-84140751 MS.gene78691:CDS 15.0%
!!! AGTTTTTTAATGTGATATAT+AGG + chr3.2:84139627-84139646 MS.gene78691:intron 15.0%
!!! GAATTTAAAATTTTAACAGT+TGG - chr3.2:84140622-84140641 None:intergenic 15.0%
!! AAAATAAAAAAATTAGGGTG+AGG - chr3.2:84139792-84139811 None:intergenic 20.0%
!! AAGTGATAGGAAAATTATTT+GGG - chr3.2:84139850-84139869 None:intergenic 20.0%
!! AATGTTAATGAGTGTATAAA+AGG + chr3.2:84139703-84139722 MS.gene78691:intron 20.0%
!! CTCTGATCATAAATAAAAAA+GGG - chr3.2:84141417-84141436 None:intergenic 20.0%
!! GAAATATATTGGAAATACAA+AGG - chr3.2:84141279-84141298 None:intergenic 20.0%
!! TCAAAAACGAATAGTATTAT+TGG + chr3.2:84140096-84140115 MS.gene78691:intron 20.0%
!! TCTCTGATCATAAATAAAAA+AGG - chr3.2:84141418-84141437 None:intergenic 20.0%
!!! ATAAATTGACATGGTTTTAA+AGG + chr3.2:84140700-84140719 MS.gene78691:intron 20.0%
!!! ATAACACTATATTTTTGTCT+TGG - chr3.2:84140245-84140264 None:intergenic 20.0%
!!! TTAAAATTTTAACAGTTGGA+TGG - chr3.2:84140618-84140637 None:intergenic 20.0%
! AAGAAAATTGTTGTGAAAAG+AGG - chr3.2:84140578-84140597 None:intergenic 25.0%
! ACACATATCAACATTCTATT+GGG + chr3.2:84139890-84139909 MS.gene78691:intron 25.0%
! AGAAAATTGTTGTGAAAAGA+GGG - chr3.2:84140577-84140596 None:intergenic 25.0%
! AGTGATAGGAAAATTATTTG+GGG - chr3.2:84139849-84139868 None:intergenic 25.0%
! ATTAAAGAAATTCTTCGTCA+AGG + chr3.2:84140779-84140798 MS.gene78691:CDS 25.0%
! ATTTCAACTTAGAAGTTGTA+AGG - chr3.2:84139760-84139779 None:intergenic 25.0%
! CAAATGAAATATTGAACCTT+GGG - chr3.2:84141165-84141184 None:intergenic 25.0%
! GAAAGACTTGTGAAATATAT+TGG - chr3.2:84141290-84141309 None:intergenic 25.0%
! GAAGTGATAGGAAAATTATT+TGG - chr3.2:84139851-84139870 None:intergenic 25.0%
! TAATGAGTGTATAAAAGGTA+GGG + chr3.2:84139708-84139727 MS.gene78691:intron 25.0%
! TCAAATGAAATATTGAACCT+TGG - chr3.2:84141166-84141185 None:intergenic 25.0%
! TGACTGTTAATAAATTGACA+TGG + chr3.2:84140691-84140710 MS.gene78691:intron 25.0%
! TGATCATAAATAAAAAAGGG+TGG - chr3.2:84141414-84141433 None:intergenic 25.0%
! TTAAAGAAATTCTTCGTCAA+GGG + chr3.2:84140780-84140799 MS.gene78691:CDS 25.0%
! TTAATGAGTGTATAAAAGGT+AGG + chr3.2:84139707-84139726 MS.gene78691:intron 25.0%
! TTTCAACTTAGAAGTTGTAA+GGG - chr3.2:84139759-84139778 None:intergenic 25.0%
!! AAAATCATAGTCTTTCGTTT+TGG - chr3.2:84140885-84140904 None:intergenic 25.0%
!! TTCTTTTGTGAATAGATGTT+TGG - chr3.2:84140217-84140236 None:intergenic 25.0%
!!! TTTGATGGTTTTAAAGTTCT+TGG + chr3.2:84140974-84140993 MS.gene78691:CDS 25.0%
AATGAGTGTATAAAAGGTAG+GGG + chr3.2:84139709-84139728 MS.gene78691:intron 30.0%
CAATAGAATGTTGATATGTG+TGG - chr3.2:84139891-84139910 None:intergenic 30.0%
CACACATATCAACATTCTAT+TGG + chr3.2:84139889-84139908 MS.gene78691:intron 30.0%
GAAGAAGTTTAGATGATAGA+TGG - chr3.2:84140361-84140380 None:intergenic 30.0%
GATTGAAGTGTGAAAGATAA+TGG - chr3.2:84140064-84140083 None:intergenic 30.0%
TACCTTGTTCTTGAAATCAA+CGG - chr3.2:84140538-84140557 None:intergenic 30.0%
TTATCTTTGCCTTGCTTATA+CGG - chr3.2:84141004-84141023 None:intergenic 30.0%
TTCAACTTAGAAGTTGTAAG+GGG - chr3.2:84139758-84139777 None:intergenic 30.0%
TTCATTGAAGTAAACGAAGA+AGG + chr3.2:84141307-84141326 MS.gene78691:CDS 30.0%
TTCTTCTTGCTGATCATAAA+GGG - chr3.2:84140938-84140957 None:intergenic 30.0%
! CAAACTTCCATTTGTTAAAG+TGG + chr3.2:84141120-84141139 MS.gene78691:CDS 30.0%
! CAGTTTATTAGAGCTTTTGA+TGG + chr3.2:84140959-84140978 MS.gene78691:CDS 30.0%
! GTTTTACCTTTTACTAATGG+AGG + chr3.2:84141223-84141242 MS.gene78691:CDS 30.0%
! TATGATTTTCACCTTCTCAA+TGG + chr3.2:84140896-84140915 MS.gene78691:CDS 30.0%
!! GTGGTTTTACCTTTTACTAA+TGG + chr3.2:84141220-84141239 MS.gene78691:CDS 30.0%
!! TTTGGAAGCATCAAACTTAT+TGG - chr3.2:84140867-84140886 None:intergenic 30.0%
AGTAGACACAGTTTCTTTGA+AGG - chr3.2:84140493-84140512 None:intergenic 35.0%
ATGAGTGTATAAAAGGTAGG+GGG + chr3.2:84139710-84139729 MS.gene78691:intron 35.0%
ATGATCAGAGAAGATTTGAC+CGG + chr3.2:84141427-84141446 MS.gene78691:CDS 35.0%
CTGCACTCTTCTTCAATTAA+CGG - chr3.2:84139977-84139996 None:intergenic 35.0%
CTTCTTCTTGCTGATCATAA+AGG - chr3.2:84140939-84140958 None:intergenic 35.0%
GCAAATGCACTGTACTTTAA+AGG + chr3.2:84140833-84140852 MS.gene78691:CDS 35.0%
GTGTTGTATCAACTCAGTTT+CGG - chr3.2:84141101-84141120 None:intergenic 35.0%
TAATGGAGGTCTGACTAAAA+TGG + chr3.2:84141237-84141256 MS.gene78691:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG + chr3.2:84141189-84141208 MS.gene78691:CDS 35.0%
TTTCTTCCAGATGCTAAAGA+CGG + chr3.2:84141046-84141065 MS.gene78691:CDS 35.0%
! ACTTCCATTTGTTAAAGTGG+AGG + chr3.2:84141123-84141142 MS.gene78691:CDS 35.0%
! GAAGTTGTAAGGGGTATAAA+CGG - chr3.2:84139749-84139768 None:intergenic 35.0%
! GATAGATGGATTTAAAGCCA+AGG - chr3.2:84140347-84140366 None:intergenic 35.0%
! TTCTTTGAAGGAAGGTTGAA+GGG - chr3.2:84140481-84140500 None:intergenic 35.0%
! TTTCTTTGAAGGAAGGTTGA+AGG - chr3.2:84140482-84140501 None:intergenic 35.0%
!! TTCCGTTGATTTCAAGAACA+AGG + chr3.2:84140533-84140552 MS.gene78691:CDS 35.0%
AGAAATTCTTCGTCAAGGGT+CGG + chr3.2:84140784-84140803 MS.gene78691:CDS 40.0%
CAAAGATGAGTCTGGTTAAG+TGG - chr3.2:84140814-84140833 None:intergenic 40.0%
CCAGAAAAGATGTTTGGCAA+TGG - chr3.2:84140019-84140038 None:intergenic 40.0%
CCTACCTCCACTTTAACAAA+TGG - chr3.2:84141130-84141149 None:intergenic 40.0%
GACGTCATACTAGAAGTGAT+AGG - chr3.2:84139863-84139882 None:intergenic 40.0%
GCTACAAAGTCTATTCGAGT+TGG - chr3.2:84141388-84141407 None:intergenic 40.0%
GTCAGACCTCCATTAGTAAA+AGG - chr3.2:84141232-84141251 None:intergenic 40.0%
TACGAGCCAGAAAAGATGTT+TGG - chr3.2:84140025-84140044 None:intergenic 40.0%
TCTGATATGCTGAAGGAGTT+AGG + chr3.2:84141196-84141215 MS.gene78691:CDS 40.0%
TGCATTTGCAAAGATGAGTC+TGG - chr3.2:84140822-84140841 None:intergenic 40.0%
TGTATCAACTCAGTTTCGGA+AGG - chr3.2:84141097-84141116 None:intergenic 40.0%
TGTGAATAGATGTTTGGCGA+TGG - chr3.2:84140211-84140230 None:intergenic 40.0%
TTCTTCCAGATGCTAAAGAC+GGG + chr3.2:84141047-84141066 MS.gene78691:CDS 40.0%
TTGTTCAACCCACACACTAT+TGG - chr3.2:84140451-84140470 None:intergenic 40.0%
! CACTGTACTTTAAAGGAGCA+TGG + chr3.2:84140840-84140859 MS.gene78691:CDS 40.0%
! CCATTGCCAAACATCTTTTC+TGG + chr3.2:84140016-84140035 MS.gene78691:intron 40.0%
! CCATTTGTTAAAGTGGAGGT+AGG + chr3.2:84141127-84141146 MS.gene78691:CDS 40.0%
! GACACAGTTTCTTTGAAGGA+AGG - chr3.2:84140489-84140508 None:intergenic 40.0%
! GGTTTGGTTAATGGCAGATT+GGG - chr3.2:84140175-84140194 None:intergenic 40.0%
! TCTTTGAAGGAAGGTTGAAG+GGG - chr3.2:84140480-84140499 None:intergenic 40.0%
!! GGAAACGTTGGTTTGGTTAA+TGG - chr3.2:84140184-84140203 None:intergenic 40.0%
!! TATTCGAGTTGGAACAATCC+TGG - chr3.2:84141377-84141396 None:intergenic 40.0%
!! TGGTTTGGTTAATGGCAGAT+TGG - chr3.2:84140176-84140195 None:intergenic 40.0%
AACTGTCGTCTTTGTTGGAC+AGG + chr3.2:84141450-84141469 MS.gene78691:CDS 45.0%
AAGCTGACGATGTTCATGTG+TGG - chr3.2:84140136-84140155 None:intergenic 45.0%
ACACACTATTGGCAACAGAG+AGG - chr3.2:84140440-84140459 None:intergenic 45.0%
AGCACAACTTGGATTGAGAG+TGG - chr3.2:84140270-84140289 None:intergenic 45.0%
AGCTGACGATGTTCATGTGT+GGG - chr3.2:84140135-84140154 None:intergenic 45.0%
ATAGATGTTTGGCGATGGTG+AGG - chr3.2:84140206-84140225 None:intergenic 45.0%
ATCATAGCTGCTGGATCTCA+GGG + chr3.2:84140294-84140313 MS.gene78691:CDS 45.0%
CAACAACTTCTCGACTTCCT+TGG + chr3.2:84140327-84140346 MS.gene78691:CDS 45.0%
CTATGATGCTGAGCACAACT+TGG - chr3.2:84140281-84140300 None:intergenic 45.0%
CTCTGTTGCCAATAGTGTGT+GGG + chr3.2:84140440-84140459 MS.gene78691:CDS 45.0%
GGTTAATGGCAGATTGGGAT+CGG - chr3.2:84140170-84140189 None:intergenic 45.0%
TAGATGTTTGGCGATGGTGA+GGG - chr3.2:84140205-84140224 None:intergenic 45.0%
TCCAACAAAGACGACAGTTC+CGG - chr3.2:84141449-84141468 None:intergenic 45.0%
TCTCAATGGCAGATCAGTCA+AGG + chr3.2:84140910-84140929 MS.gene78691:CDS 45.0%
TCTCTGTTGCCAATAGTGTG+TGG + chr3.2:84140439-84140458 MS.gene78691:CDS 45.0%
TGACTGATCTGCCATTGAGA+AGG - chr3.2:84140910-84140929 None:intergenic 45.0%
TGGGCTGAGAAAGAGACAAA+TGG + chr3.2:84140752-84140771 MS.gene78691:CDS 45.0%
! CTTGGTCTTCCGTATAAGCA+AGG + chr3.2:84140992-84141011 MS.gene78691:CDS 45.0%
! GTCGAGAAGTTGTTGTTGAG+TGG - chr3.2:84140322-84140341 None:intergenic 45.0%
!! AGTAAACGAAGAAGGCACTG+AGG + chr3.2:84141315-84141334 MS.gene78691:CDS 45.0%
!! GCAATGGTCATTGATTTGCG+AGG - chr3.2:84140003-84140022 None:intergenic 45.0%
AAGTGGAGGTAGGTGACTTG+AGG + chr3.2:84141137-84141156 MS.gene78691:CDS 50.0%
ACCGGAACTGTCGTCTTTGT+TGG + chr3.2:84141445-84141464 MS.gene78691:CDS 50.0%
CATCATAGCTGCTGGATCTC+AGG + chr3.2:84140293-84140312 MS.gene78691:CDS 50.0%
GAAGGAAGGTTGAAGGGGAA+GGG - chr3.2:84140475-84140494 None:intergenic 50.0%
GGCAACTTCTCAAGCAACGT+TGG - chr3.2:84141076-84141095 None:intergenic 50.0%
GTCACTATAGCTGGAGCAGT+CGG + chr3.2:84141346-84141365 MS.gene78691:CDS 50.0%
TAATGGCAGATTGGGATCGG+AGG - chr3.2:84140167-84140186 None:intergenic 50.0%
TAGGTGACTTGAGGATCCCA+AGG + chr3.2:84141146-84141165 MS.gene78691:CDS 50.0%
TATGCTGAAGGAGTTAGGCG+TGG + chr3.2:84141201-84141220 MS.gene78691:CDS 50.0%
TGAAGGAAGGTTGAAGGGGA+AGG - chr3.2:84140476-84140495 None:intergenic 50.0%
! TGGTGAGGGAAACGTTGGTT+TGG - chr3.2:84140191-84140210 None:intergenic 50.0%
AGCGGCATCAGAGAGGATGA+TGG - chr3.2:84140400-84140419 None:intergenic 55.0%
CTATTGGCAACAGAGAGGCG+AGG - chr3.2:84140435-84140454 None:intergenic 55.0%
GGACAGGTGCTCAATCCTCT+TGG + chr3.2:84141466-84141485 MS.gene78691:CDS 55.0%
GTGCTCAGCATCATAGCTGC+TGG + chr3.2:84140285-84140304 MS.gene78691:CDS 55.0%
AGAGAGGCGAGGACCACCAA+AGG - chr3.2:84140424-84140443 None:intergenic 60.0%
CAAAGGGAGCGGCATCAGAG+AGG - chr3.2:84140407-84140426 None:intergenic 60.0%
CTCTCTGATGCCGCTCCCTT+TGG + chr3.2:84140405-84140424 MS.gene78691:CDS 60.0%
GAGAGGCGAGGACCACCAAA+GGG - chr3.2:84140423-84140442 None:intergenic 60.0%
GCTGCTGCGGTCACTATAGC+TGG + chr3.2:84141337-84141356 MS.gene78691:CDS 60.0%
GGCAGCCCGTCTTTAGCATC+TGG - chr3.2:84141055-84141074 None:intergenic 60.0%
GGCGATGGTGAGGGAAACGT+TGG - chr3.2:84140196-84140215 None:intergenic 60.0%
TCTGATGCCGCTCCCTTTGG+TGG + chr3.2:84140408-84140427 MS.gene78691:CDS 60.0%
!! AGAAGGCACTGAGGCTGCTG+CGG + chr3.2:84141324-84141343 MS.gene78691:CDS 60.0%
GCGAGGACCACCAAAGGGAG+CGG - chr3.2:84140418-84140437 None:intergenic 65.0%
CTGGAGCAGTCGGCAGCTCC+AGG + chr3.2:84141356-84141375 MS.gene78691:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 84139601 84141492 84139601 ID=MS.gene78691
chr3.2 mRNA 84139601 84141492 84139601 ID=MS.gene78691.t1;Parent=MS.gene78691
chr3.2 exon 84139601 84139623 84139601 ID=MS.gene78691.t1.exon1;Parent=MS.gene78691.t1
chr3.2 CDS 84139601 84139623 84139601 ID=cds.MS.gene78691.t1;Parent=MS.gene78691.t1
chr3.2 exon 84140110 84140554 84140110 ID=MS.gene78691.t1.exon2;Parent=MS.gene78691.t1
chr3.2 CDS 84140110 84140554 84140110 ID=cds.MS.gene78691.t1;Parent=MS.gene78691.t1
chr3.2 exon 84140722 84141492 84140722 ID=MS.gene78691.t1.exon3;Parent=MS.gene78691.t1
chr3.2 CDS 84140722 84141492 84140722 ID=cds.MS.gene78691.t1;Parent=MS.gene78691.t1
Gene Sequence

>MS.gene78691

ATGGAGAGTGATGTGTTAGATTAGTAAGTTTTTTAATGTGATATATAGGAAGAGAGATAAAGAGAGAAATTAAAATGATATATTTTTTTGAATGGAAATTAAAATGTTAATGAGTGTATAAAAGGTAGGGGGTTCAATTTTTTTTCCGTTTATACCCCTTACAACTTCTAAGTTGAAATATTTGTCATCCTCACCCTAATTTTTTTATTTTTTATTATTATAGAAAAGAAAAAACAAATATTTTTCCCCAAATAATTTTCCTATCACTTCTAGTATGACGTCATCAACCACACATATCAACATTCTATTGGGTATTAATGAGCGAGATCTTCTTAAATGCAATAAGCTCTTCAAACAAGATCTTCTTCGTGCGCCGTTAATTGAAGAAGAGTGCAGTTTCCTCGCAAATCAATGACCATTGCCAAACATCTTTTCTGGCTCGTAGTTTTGCTCAGCGTCTCCATTATCTTTCACACTTCAATCATTCAATTCAATTCAAAAACGAATAGTATTATTGGCTTCGATGAGACTCCCACACATGAACATCGTCAGCTTCTTGACTTCCTCCGATCCCAATCTGCCATTAACCAAACCAACGTTTCCCTCACCATCGCCAAACATCTATTCACAAAAGAATCTCACCAAGACAAAAATATAGTGTTATCGCCACTCTCAATCCAAGTTGTGCTCAGCATCATAGCTGCTGGATCTCAGGGTGCCACTCAACAACAACTTCTCGACTTCCTTGGCTTTAAATCCATCTATCATCTAAACTTCTTCGTCTCTCAACTCGTTTCCATCATCCTCTCTGATGCCGCTCCCTTTGGTGGTCCTCGCCTCTCTGTTGCCAATAGTGTGTGGGTTGAACAAACCCTTCCCCTTCAACCTTCCTTCAAAGAAACTGTGTCTACTGATTATAAAGCAACTTTGTCTTCCGTTGATTTCAAGAACAAGGTATGTATTGTATGTATCTCCCTCTTTTCACAACAATTTTCTTTTCTTTACTGTTTTCTACCATCCAACTGTTAAAATTTTAAATTCTATTATTGCAATACTTGTGAAAAGAACTCAACTTATCTATCTGCATAATTGACTGTTAATAAATTGACATGGTTTTAAAGGCAATTGAAGTGATTAATAAAGTGAATTTATGGGCTGAGAAAGAGACAAATGGTCTTATTAAAGAAATTCTTCGTCAAGGGTCGGTTGACCACTTAACCAGACTCATCTTTGCAAATGCACTGTACTTTAAAGGAGCATGGACCAATAAGTTTGATGCTTCCAAAACGAAAGACTATGATTTTCACCTTCTCAATGGCAGATCAGTCAAGGTTCCCTTTATGATCAGCAAGAAGAAGCAGTTTATTAGAGCTTTTGATGGTTTTAAAGTTCTTGGTCTTCCGTATAAGCAAGGCAAAGATAAGCGTCAATTCTCTATGTACTTTTTTCTTCCAGATGCTAAAGACGGGCTGCCAACGTTGCTTGAGAAGTTGCCTTCCGAAACTGAGTTGATACAACACAAACTTCCATTTGTTAAAGTGGAGGTAGGTGACTTGAGGATCCCAAGGTTCAATATTTCATTTGAACTTGAAACTTCTGATATGCTGAAGGAGTTAGGCGTGGTTTTACCTTTTACTAATGGAGGTCTGACTAAAATGGTGATGAGTACTCAAAACCTTTGTATTTCCAATATATTTCACAAGTCTTTCATTGAAGTAAACGAAGAAGGCACTGAGGCTGCTGCGGTCACTATAGCTGGAGCAGTCGGCAGCTCCAGGATTGTTCCAACTCGAATAGACTTTGTAGCTGACCACCCTTTTTTATTTATGATCAGAGAAGATTTGACCGGAACTGTCGTCTTTGTTGGACAGGTGCTCAATCCTCTTGGATGA
Protein sequence

>MS.gene78691.t1

MESDVLDYIIGFDETPTHEHRQLLDFLRSQSAINQTNVSLTIAKHLFTKESHQDKNIVLSPLSIQVVLSIIAAGSQGATQQQLLDFLGFKSIYHLNFFVSQLVSIILSDAAPFGGPRLSVANSVWVEQTLPLQPSFKETVSTDYKATLSSVDFKNKAIEVINKVNLWAEKETNGLIKEILRQGSVDHLTRLIFANALYFKGAWTNKFDASKTKDYDFHLLNGRSVKVPFMISKKKQFIRAFDGFKVLGLPYKQGKDKRQFSMYFFLPDAKDGLPTLLEKLPSETELIQHKLPFVKVEVGDLRIPRFNISFELETSDMLKELGVVLPFTNGGLTKMVMSTQNLCISNIFHKSFIEVNEEGTEAAAVTIAGAVGSSRIVPTRIDFVADHPFLFMIREDLTGTVVFVGQVLNPLG