Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78692.t1 | XP_003602973.1 | 79.6 | 383 | 76 | 1 | 26 | 408 | 9 | 389 | 3.60E-170 | 607.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78692.t1 | Q9S7T8 | 53.7 | 382 | 174 | 3 | 27 | 406 | 10 | 390 | 1.4e-114 | 414.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78692.t1 | G7J5Q8 | 79.6 | 383 | 76 | 1 | 26 | 408 | 9 | 389 | 2.6e-170 | 607.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene78692 | MS.gene065945 | PPI |
MS.gene78692 | MS.gene031697 | PPI |
MS.gene78692 | MS.gene006610 | PPI |
MS.gene78692 | MS.gene045585 | PPI |
MS.gene78692 | MS.gene065944 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78692.t1 | MTR_3g101030 | 74.757 | 412 | 83 | 5 | 16 | 408 | 20 | 429 | 0.0 | 600 |
MS.gene78692.t1 | MTR_3g101010 | 79.634 | 383 | 76 | 1 | 26 | 408 | 9 | 389 | 0.0 | 593 |
MS.gene78692.t1 | MTR_3g101050 | 78.643 | 398 | 63 | 7 | 14 | 407 | 18 | 397 | 0.0 | 580 |
MS.gene78692.t1 | MTR_3g018740 | 72.063 | 383 | 102 | 3 | 25 | 406 | 8 | 386 | 0.0 | 537 |
MS.gene78692.t1 | MTR_8g027395 | 68.217 | 387 | 117 | 2 | 22 | 408 | 17 | 397 | 0.0 | 520 |
MS.gene78692.t1 | MTR_4g045707 | 66.158 | 393 | 123 | 3 | 19 | 408 | 3 | 388 | 3.42e-180 | 507 |
MS.gene78692.t1 | MTR_8g027420 | 66.150 | 387 | 114 | 3 | 22 | 408 | 6 | 375 | 7.52e-179 | 503 |
MS.gene78692.t1 | MTR_8g461160 | 65.535 | 383 | 130 | 1 | 26 | 406 | 10 | 392 | 9.13e-177 | 498 |
MS.gene78692.t1 | MTR_3g101180 | 63.500 | 400 | 130 | 3 | 19 | 406 | 3 | 398 | 9.11e-176 | 496 |
MS.gene78692.t1 | MTR_7g451890 | 63.117 | 385 | 140 | 1 | 26 | 408 | 18 | 402 | 7.27e-173 | 489 |
MS.gene78692.t1 | MTR_7g047780 | 63.472 | 386 | 137 | 2 | 26 | 408 | 18 | 402 | 5.10e-171 | 484 |
MS.gene78692.t1 | MTR_7g050750 | 62.857 | 385 | 141 | 1 | 26 | 408 | 12 | 396 | 2.13e-170 | 482 |
MS.gene78692.t1 | MTR_2g046030 | 64.767 | 386 | 125 | 4 | 25 | 406 | 8 | 386 | 2.54e-170 | 482 |
MS.gene78692.t1 | MTR_4g088525 | 65.312 | 369 | 124 | 1 | 39 | 407 | 4 | 368 | 2.93e-170 | 481 |
MS.gene78692.t1 | MTR_3g101130 | 63.281 | 384 | 136 | 2 | 26 | 408 | 10 | 389 | 1.71e-169 | 480 |
MS.gene78692.t1 | MTR_2g045980 | 65.285 | 386 | 123 | 4 | 25 | 406 | 8 | 386 | 2.03e-169 | 479 |
MS.gene78692.t1 | MTR_7g050810 | 62.953 | 386 | 139 | 2 | 26 | 408 | 20 | 404 | 8.81e-169 | 478 |
MS.gene78692.t1 | MTR_4g088535 | 65.625 | 384 | 110 | 4 | 20 | 403 | 5 | 366 | 9.90e-167 | 473 |
MS.gene78692.t1 | MTR_3g048000 | 63.969 | 383 | 115 | 5 | 26 | 407 | 31 | 391 | 1.97e-166 | 472 |
MS.gene78692.t1 | MTR_3g015620 | 62.176 | 386 | 116 | 6 | 25 | 406 | 19 | 378 | 1.29e-152 | 437 |
MS.gene78692.t1 | MTR_3g102920 | 60.789 | 380 | 109 | 6 | 30 | 406 | 66 | 408 | 7.38e-146 | 421 |
MS.gene78692.t1 | MTR_3g100995 | 72.835 | 254 | 66 | 2 | 155 | 408 | 14 | 264 | 1.22e-133 | 384 |
MS.gene78692.t1 | MTR_3g101190 | 55.616 | 365 | 95 | 3 | 46 | 408 | 13 | 312 | 4.85e-132 | 382 |
MS.gene78692.t1 | MTR_3g101200 | 56.334 | 371 | 135 | 5 | 38 | 406 | 45 | 390 | 8.02e-131 | 382 |
MS.gene78692.t1 | MTR_3g018747 | 68.846 | 260 | 65 | 3 | 148 | 406 | 9 | 253 | 2.04e-120 | 350 |
MS.gene78692.t1 | MTR_7g050830 | 55.519 | 308 | 106 | 2 | 28 | 315 | 22 | 318 | 1.78e-112 | 332 |
MS.gene78692.t1 | MTR_3g100010 | 56.289 | 318 | 91 | 2 | 45 | 329 | 38 | 340 | 1.71e-111 | 330 |
MS.gene78692.t1 | MTR_3g015760 | 64.000 | 275 | 95 | 2 | 133 | 406 | 8 | 279 | 1.00e-109 | 324 |
MS.gene78692.t1 | MTR_3g111160 | 70.476 | 210 | 59 | 2 | 200 | 408 | 13 | 220 | 1.78e-93 | 280 |
MS.gene78692.t1 | MTR_3g101110 | 61.088 | 239 | 63 | 4 | 148 | 382 | 68 | 280 | 4.68e-89 | 271 |
MS.gene78692.t1 | MTR_3g100520 | 61.712 | 222 | 70 | 3 | 189 | 408 | 1 | 209 | 2.25e-87 | 264 |
MS.gene78692.t1 | MTR_3g114310 | 41.500 | 400 | 209 | 11 | 24 | 408 | 21 | 410 | 2.95e-86 | 268 |
MS.gene78692.t1 | MTR_2g046410 | 66.010 | 203 | 63 | 2 | 208 | 406 | 147 | 347 | 1.27e-85 | 265 |
MS.gene78692.t1 | MTR_3g099970 | 65.306 | 196 | 51 | 2 | 148 | 343 | 20 | 198 | 2.96e-84 | 256 |
MS.gene78692.t1 | MTR_3g101020 | 63.102 | 187 | 42 | 2 | 222 | 408 | 1 | 160 | 1.03e-74 | 230 |
MS.gene78692.t1 | MTR_3g101150 | 70.253 | 158 | 43 | 2 | 254 | 407 | 1 | 158 | 2.03e-70 | 219 |
MS.gene78692.t1 | MTR_3g102870 | 64.286 | 154 | 55 | 0 | 211 | 364 | 1 | 154 | 1.53e-63 | 202 |
MS.gene78692.t1 | MTR_3g111150 | 59.551 | 178 | 46 | 3 | 25 | 202 | 2 | 153 | 7.52e-63 | 200 |
MS.gene78692.t1 | MTR_3g100990 | 59.459 | 148 | 57 | 2 | 26 | 173 | 9 | 153 | 1.54e-46 | 167 |
MS.gene78692.t1 | MTR_4g093550 | 70.732 | 82 | 22 | 1 | 26 | 107 | 10 | 89 | 7.53e-29 | 108 |
MS.gene78692.t1 | MTR_6g046890 | 62.338 | 77 | 26 | 1 | 39 | 115 | 14 | 87 | 1.22e-20 | 87.8 |
MS.gene78692.t1 | MTR_3g101140 | 47.581 | 124 | 47 | 4 | 287 | 408 | 9 | 116 | 2.39e-20 | 86.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78692.t1 | AT1G47710 | 53.665 | 382 | 174 | 3 | 27 | 406 | 10 | 390 | 3.47e-145 | 418 |
MS.gene78692.t1 | AT1G47710 | 53.665 | 382 | 174 | 3 | 27 | 406 | 37 | 417 | 9.69e-145 | 418 |
MS.gene78692.t1 | AT3G45220 | 48.223 | 394 | 178 | 6 | 26 | 405 | 9 | 390 | 5.43e-125 | 367 |
MS.gene78692.t1 | AT2G25240 | 49.219 | 384 | 181 | 7 | 26 | 405 | 9 | 382 | 2.00e-121 | 357 |
MS.gene78692.t1 | AT2G26390 | 48.593 | 391 | 177 | 7 | 26 | 405 | 9 | 386 | 2.90e-120 | 355 |
MS.gene78692.t1 | AT2G14540 | 45.052 | 384 | 184 | 6 | 26 | 405 | 37 | 397 | 6.90e-97 | 295 |
MS.gene78692.t1 | AT1G64030 | 43.264 | 386 | 190 | 6 | 26 | 405 | 9 | 371 | 2.00e-96 | 293 |
MS.gene78692.t1 | AT1G62170 | 42.162 | 370 | 183 | 5 | 45 | 407 | 88 | 433 | 8.89e-96 | 293 |
MS.gene78692.t1 | AT2G35580 | 44.000 | 375 | 179 | 9 | 41 | 405 | 18 | 371 | 1.24e-90 | 278 |
MS.gene78692.t1 | AT1G62170 | 38.710 | 403 | 183 | 6 | 45 | 407 | 88 | 466 | 1.11e-88 | 276 |
MS.gene78692.t1 | AT1G64010 | 45.413 | 218 | 95 | 4 | 189 | 405 | 1 | 195 | 4.61e-57 | 186 |
MS.gene78692.t1 | AT1G64010 | 45.545 | 202 | 86 | 4 | 205 | 405 | 3 | 181 | 5.92e-51 | 170 |
MS.gene78692.t1 | AT1G63280 | 53.043 | 115 | 50 | 2 | 148 | 260 | 8 | 120 | 8.38e-34 | 122 |
MS.gene78692.t1 | AT1G62160 | 33.632 | 223 | 120 | 5 | 190 | 407 | 21 | 220 | 1.29e-30 | 117 |
MS.gene78692.t1 | AT1G51330 | 47.748 | 111 | 55 | 2 | 147 | 254 | 30 | 140 | 1.52e-23 | 97.4 |
MS.gene78692.t1 | AT1G64020 | 35.088 | 114 | 71 | 3 | 27 | 139 | 10 | 121 | 7.55e-16 | 73.9 |
Find 92 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAGACTTGTGGAATATTT+TGG | 0.106119 | 3.2:-84135482 | None:intergenic |
GCTAATGCACTATACTTTAA+AGG | 0.155210 | 3.2:+84135022 | MS.gene78692:CDS |
CGAGAAAAGAAGTGAATTTA+TGG | 0.176628 | 3.2:+84134921 | MS.gene78692:CDS |
TGAAACTTCTGATATGTTAA+AGG | 0.194021 | 3.2:+84135378 | MS.gene78692:CDS |
TTATCTTCACCTTGCTTATA+AGG | 0.268250 | 3.2:-84135190 | None:intergenic |
CTTGTCTTGATGAGATTCTT+TGG | 0.271973 | 3.2:-84134427 | None:intergenic |
GGCGGTGGCTGCAGCAGCTT+TGG | 0.307932 | 3.2:-84135527 | None:intergenic |
AAGTGGAAGTAGGTGACTTT+AGG | 0.323594 | 3.2:+84135326 | MS.gene78692:CDS |
GAGGAAGTCAAGGGCGTATT+CGG | 0.323880 | 3.2:-84134343 | None:intergenic |
GCCAACTTTGCTTGAGAAGC+TGG | 0.324647 | 3.2:+84135261 | MS.gene78692:CDS |
ATTCAAAAGGTGAAAGTCAT+AGG | 0.334305 | 3.2:-84135083 | None:intergenic |
TAATGGAGGGTTGACTAAAA+TGG | 0.342994 | 3.2:+84135426 | MS.gene78692:CDS |
TTTCTTCCAAATGCAAAAGA+TGG | 0.344851 | 3.2:+84135235 | MS.gene78692:CDS |
CAGGTGCTCAATCCTCTTGC+TGG | 0.350146 | 3.2:+84135667 | MS.gene78692:CDS |
TTCTTTGGAGAAAAGATGTT+TGG | 0.357142 | 3.2:-84134412 | None:intergenic |
GGTTGTTGGCGGGTTGGAAT+CGG | 0.375878 | 3.2:-84134365 | None:intergenic |
ACCGCCGCAACTTTACTTTA+CGG | 0.390234 | 3.2:+84135544 | MS.gene78692:CDS |
ACCGGAACTATCGCCTTTGT+TGG | 0.400356 | 3.2:+84135643 | MS.gene78692:CDS |
CAACAACTTCTCGACTTCCT+TGG | 0.417102 | 3.2:+84134525 | MS.gene78692:CDS |
TGAAAGAAGGTTGAAGAGAA+AGG | 0.426729 | 3.2:-84134671 | None:intergenic |
AACTATCGCCTTTGTTGGGC+AGG | 0.426929 | 3.2:+84135648 | MS.gene78692:CDS |
ATTAAAGAACTTCTTCCTCT+AGG | 0.427888 | 3.2:+84134968 | MS.gene78692:CDS |
CCCAACAAAGGCGATAGTTC+CGG | 0.429621 | 3.2:-84135644 | None:intergenic |
GGAAACGTTGCTTTGGTTGT+TGG | 0.432490 | 3.2:-84134379 | None:intergenic |
GACACAATTTGCTTGAAAGA+AGG | 0.436343 | 3.2:-84134684 | None:intergenic |
TCTCTGATCATAAATAAGAA+TGG | 0.440676 | 3.2:-84135613 | None:intergenic |
TAACTGAGTTTCCATTCAAA+AGG | 0.441115 | 3.2:-84135096 | None:intergenic |
AACGTTGCTTTGGTTGTTGG+CGG | 0.442357 | 3.2:-84134376 | None:intergenic |
TTTGAATGGAAACTCAGTTA+AGG | 0.443112 | 3.2:+84135099 | MS.gene78692:CDS |
CATCATCGCTGCTGGTTCTG+AGG | 0.444526 | 3.2:+84134491 | MS.gene78692:CDS |
TTAAAGAACTTCTTCCTCTA+GGG | 0.444956 | 3.2:+84134969 | MS.gene78692:CDS |
CTCTGATCATAAATAAGAAT+GGG | 0.447141 | 3.2:-84135612 | None:intergenic |
CAAGCTTCCTCTTGATAAAG+TGG | 0.447424 | 3.2:+84135309 | MS.gene78692:CDS |
GAGAAAAGAAGTGAATTTAT+GGG | 0.455502 | 3.2:+84134922 | MS.gene78692:CDS |
TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.2:+84135502 | MS.gene78692:CDS |
GAAAGAAGGTTGAAGAGAAA+GGG | 0.460189 | 3.2:-84134670 | None:intergenic |
TGCTTTGGTTGTTGGCGGGT+TGG | 0.465518 | 3.2:-84134371 | None:intergenic |
CTTCTTCTCACTGGTCATGA+AGG | 0.470421 | 3.2:-84135125 | None:intergenic |
CGATGATGCTGAGCACAACT+TGG | 0.475488 | 3.2:-84134476 | None:intergenic |
CCGGAACTATCGCCTTTGTT+GGG | 0.480048 | 3.2:+84135644 | MS.gene78692:CDS |
GTGCTCAGCATCATCGCTGC+TGG | 0.482096 | 3.2:+84134483 | MS.gene78692:CDS |
AAAGACGGTGCTCCCGCAGG+TGG | 0.483007 | 3.2:+84134606 | MS.gene78692:CDS |
TGGTGAGGGAAACGTTGCTT+TGG | 0.486728 | 3.2:-84134386 | None:intergenic |
TTCTTCCAAATGCAAAAGAT+GGG | 0.486946 | 3.2:+84135236 | MS.gene78692:CDS |
GCCAGCTTCTCAAGCAAAGT+TGG | 0.489801 | 3.2:-84135262 | None:intergenic |
GTGTTGTAGTAACTCAGATT+CGG | 0.496759 | 3.2:-84135287 | None:intergenic |
CTTCACCTTGCTTATAAGGA+AGG | 0.497179 | 3.2:-84135186 | None:intergenic |
GAGAGACGAGGCCCACCTGC+GGG | 0.498754 | 3.2:-84134618 | None:intergenic |
TCTGATATGTTAAAGGAGCT+TGG | 0.499230 | 3.2:+84135385 | MS.gene78692:CDS |
TTACTTCAATGAAAGACTTG+TGG | 0.504558 | 3.2:-84135492 | None:intergenic |
GGGAGCACCGTCTTTGAGAA+TGG | 0.518279 | 3.2:-84134598 | None:intergenic |
CTCAAAGACGGTGCTCCCGC+AGG | 0.518597 | 3.2:+84134603 | MS.gene78692:CDS |
GTAAAGTAAAGTTGCGGCGG+TGG | 0.519079 | 3.2:-84135542 | None:intergenic |
ATCATCGCTGCTGGTTCTGA+GGG | 0.520290 | 3.2:+84134492 | MS.gene78692:CDS |
AATAAACTGCTTCTTCTCAC+TGG | 0.523013 | 3.2:-84135134 | None:intergenic |
TCAAATGAAATATTGAACCT+TGG | 0.524127 | 3.2:-84135352 | None:intergenic |
AAAGATGTTTGGCGATGGTG+AGG | 0.524270 | 3.2:-84134401 | None:intergenic |
GCTACAAAGTCTATGTCTGT+TGG | 0.529202 | 3.2:-84135583 | None:intergenic |
TAGGTGACTTTAGGATTCCA+AGG | 0.533810 | 3.2:+84135335 | MS.gene78692:CDS |
GAAGAAGTTTAGATGATCGA+TGG | 0.536342 | 3.2:-84134556 | None:intergenic |
TTCTGTTGATTTCAAGAACA+AGG | 0.537281 | 3.2:+84134731 | MS.gene78692:CDS |
ATGATCAGAGAAGATTTGAC+CGG | 0.538023 | 3.2:+84135625 | MS.gene78692:CDS |
TGTTGGCGGGTTGGAATCGG+AGG | 0.542527 | 3.2:-84134362 | None:intergenic |
GTTGGAATCGGAGGAAGTCA+AGG | 0.547443 | 3.2:-84134353 | None:intergenic |
ACGTTGCTTTGGTTGTTGGC+GGG | 0.547721 | 3.2:-84134375 | None:intergenic |
CACTATACTTTAAAGGAGAG+TGG | 0.554157 | 3.2:+84135029 | MS.gene78692:CDS |
CTTGGCCTTCCTTATAAGCA+AGG | 0.559520 | 3.2:+84135181 | MS.gene78692:CDS |
GTCAACCCTCCATTAGTGAA+AGG | 0.561737 | 3.2:-84135418 | None:intergenic |
AAGACGGTGCTCCCGCAGGT+GGG | 0.563207 | 3.2:+84134607 | MS.gene78692:CDS |
CCTACTTCCACTTTATCAAG+AGG | 0.564451 | 3.2:-84135316 | None:intergenic |
CCTCTTGATAAAGTGGAAGT+AGG | 0.566916 | 3.2:+84135316 | MS.gene78692:CDS |
TTCTTCTCACTGGTCATGAA+GGG | 0.569786 | 3.2:-84135124 | None:intergenic |
TGGGCTGAAAGAGAGACAAA+TGG | 0.574537 | 3.2:+84134941 | MS.gene78692:CDS |
GTCGAGAAGTTGTTGTTGAG+TGG | 0.576826 | 3.2:-84134517 | None:intergenic |
TGCTAAGATCATCCAGCAAG+AGG | 0.578961 | 3.2:-84135679 | None:intergenic |
AGAGAGACGAGGCCCACCTG+CGG | 0.584963 | 3.2:-84134619 | None:intergenic |
AAGATGTTTGGCGATGGTGA+GGG | 0.596429 | 3.2:-84134400 | None:intergenic |
ATTGAGCACCTGCCCAACAA+AGG | 0.599203 | 3.2:-84135656 | None:intergenic |
TTGGAATCGGAGGAAGTCAA+GGG | 0.608158 | 3.2:-84134352 | None:intergenic |
TATGTCTGTTGGAAGACTCA+AGG | 0.610434 | 3.2:-84135572 | None:intergenic |
AGAACTTCTTCCTCTAGGGT+CGG | 0.613652 | 3.2:+84134973 | MS.gene78692:CDS |
TGATCATAAATAAGAATGGG+TGG | 0.618025 | 3.2:-84135609 | None:intergenic |
GTCTTCGCCATTCTCAAAGA+CGG | 0.621526 | 3.2:+84134591 | MS.gene78692:CDS |
CTTGCTTATAAGGAAGGCCA+AGG | 0.627980 | 3.2:-84135180 | None:intergenic |
TATGTTAAAGGAGCTTGGCG+TGG | 0.637410 | 3.2:+84135390 | MS.gene78692:CDS |
GGAGAAAAGATGTTTGGCGA+TGG | 0.656877 | 3.2:-84134406 | None:intergenic |
TCCGTAAAGTAAAGTTGCGG+CGG | 0.659110 | 3.2:-84135545 | None:intergenic |
GATCGATGGATTTAGAGCCA+AGG | 0.665025 | 3.2:-84134542 | None:intergenic |
CCATCGACAAAAGAGAGACG+AGG | 0.674638 | 3.2:-84134630 | None:intergenic |
AAGTTGTCGACCGACCCTAG+AGG | 0.702735 | 3.2:-84134983 | None:intergenic |
AGCACAACTTGGATTGACAG+TGG | 0.707392 | 3.2:-84134465 | None:intergenic |
GCTTCCGTAAAGTAAAGTTG+CGG | 0.723230 | 3.2:-84135548 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTGATTTTAATTTTTGATA+TGG | + | chr3.2:84134880-84134899 | MS.gene78692:intron | 10.0% |
!!! | AATTTTTGATATGGTTTTAA+AGG | + | chr3.2:84134889-84134908 | MS.gene78692:intron | 15.0% |
!! | ACAAAATCAAAATCAAAATC+AGG | - | chr3.2:84134805-84134824 | None:intergenic | 20.0% |
!! | AGAACTCAAAACTATATATT+TGG | + | chr3.2:84134854-84134873 | MS.gene78692:intron | 20.0% |
!! | CAAAATCAAAATCAAAATCA+GGG | - | chr3.2:84134804-84134823 | None:intergenic | 20.0% |
! | CTCTGATCATAAATAAGAAT+GGG | - | chr3.2:84135615-84135634 | None:intergenic | 25.0% |
! | GAGAAAAGAAGTGAATTTAT+GGG | + | chr3.2:84134922-84134941 | MS.gene78692:CDS | 25.0% |
! | TCAAATGAAATATTGAACCT+TGG | - | chr3.2:84135355-84135374 | None:intergenic | 25.0% |
! | TCTCTGATCATAAATAAGAA+TGG | - | chr3.2:84135616-84135635 | None:intergenic | 25.0% |
! | TGAAACTTCTGATATGTTAA+AGG | + | chr3.2:84135378-84135397 | MS.gene78692:CDS | 25.0% |
! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.2:84135502-84135521 | MS.gene78692:CDS | 25.0% |
!! | AATCTGATATTTTCTTGTAG+TGG | + | chr3.2:84134318-84134337 | MS.gene78692:CDS | 25.0% |
!!! | GAATGATAATTTTGATGCTT+CGG | + | chr3.2:84135051-84135070 | MS.gene78692:CDS | 25.0% |
!!! | GGAATATTTTGGAAACATAA+AGG | - | chr3.2:84135474-84135493 | None:intergenic | 25.0% |
ATTAAAGAACTTCTTCCTCT+AGG | + | chr3.2:84134968-84134987 | MS.gene78692:CDS | 30.0% | |
ATTCAAAAGGTGAAAGTCAT+AGG | - | chr3.2:84135086-84135105 | None:intergenic | 30.0% | |
CGAGAAAAGAAGTGAATTTA+TGG | + | chr3.2:84134921-84134940 | MS.gene78692:CDS | 30.0% | |
GCTAATGCACTATACTTTAA+AGG | + | chr3.2:84135022-84135041 | MS.gene78692:CDS | 30.0% | |
TAACTGAGTTTCCATTCAAA+AGG | - | chr3.2:84135099-84135118 | None:intergenic | 30.0% | |
TGATCATAAATAAGAATGGG+TGG | - | chr3.2:84135612-84135631 | None:intergenic | 30.0% | |
TTAAAGAACTTCTTCCTCTA+GGG | + | chr3.2:84134969-84134988 | MS.gene78692:CDS | 30.0% | |
TTACTTCAATGAAAGACTTG+TGG | - | chr3.2:84135495-84135514 | None:intergenic | 30.0% | |
TTATCTTCACCTTGCTTATA+AGG | - | chr3.2:84135193-84135212 | None:intergenic | 30.0% | |
TTCTTCCAAATGCAAAAGAT+GGG | + | chr3.2:84135236-84135255 | MS.gene78692:CDS | 30.0% | |
TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.2:84135235-84135254 | MS.gene78692:CDS | 30.0% | |
TTTGAATGGAAACTCAGTTA+AGG | + | chr3.2:84135099-84135118 | MS.gene78692:CDS | 30.0% | |
! | GAAAGACTTGTGGAATATTT+TGG | - | chr3.2:84135485-84135504 | None:intergenic | 30.0% |
! | TATGACTTTCACCTTTTGAA+TGG | + | chr3.2:84135085-84135104 | MS.gene78692:CDS | 30.0% |
! | TGTATTTTGTAGCGAAAAGA+GGG | - | chr3.2:84134773-84134792 | None:intergenic | 30.0% |
! | TTCTTTGGAGAAAAGATGTT+TGG | - | chr3.2:84134415-84134434 | None:intergenic | 30.0% |
! | TTGTATTTTGTAGCGAAAAG+AGG | - | chr3.2:84134774-84134793 | None:intergenic | 30.0% |
! | TTTTACCTTTCACTAATGGA+GGG | + | chr3.2:84135413-84135432 | MS.gene78692:CDS | 30.0% |
!! | TTCGATGATTTTAATGTCCT+TGG | + | chr3.2:84135163-84135182 | MS.gene78692:CDS | 30.0% |
!! | TTCTGTTGATTTCAAGAACA+AGG | + | chr3.2:84134731-84134750 | MS.gene78692:CDS | 30.0% |
AATAAACTGCTTCTTCTCAC+TGG | - | chr3.2:84135137-84135156 | None:intergenic | 35.0% | |
ATGATCAGAGAAGATTTGAC+CGG | + | chr3.2:84135625-84135644 | MS.gene78692:CDS | 35.0% | |
CTTGTCTTGATGAGATTCTT+TGG | - | chr3.2:84134430-84134449 | None:intergenic | 35.0% | |
GAAAGAAGGTTGAAGAGAAA+GGG | - | chr3.2:84134673-84134692 | None:intergenic | 35.0% | |
GAAGAAGTTTAGATGATCGA+TGG | - | chr3.2:84134559-84134578 | None:intergenic | 35.0% | |
GTGTTGTAGTAACTCAGATT+CGG | - | chr3.2:84135290-84135309 | None:intergenic | 35.0% | |
TAATGGAGGGTTGACTAAAA+TGG | + | chr3.2:84135426-84135445 | MS.gene78692:CDS | 35.0% | |
TCTGATATGTTAAAGGAGCT+TGG | + | chr3.2:84135385-84135404 | MS.gene78692:CDS | 35.0% | |
TGAAAGAAGGTTGAAGAGAA+AGG | - | chr3.2:84134674-84134693 | None:intergenic | 35.0% | |
! | CACTATACTTTAAAGGAGAG+TGG | + | chr3.2:84135029-84135048 | MS.gene78692:CDS | 35.0% |
! | GACACAATTTGCTTGAAAGA+AGG | - | chr3.2:84134687-84134706 | None:intergenic | 35.0% |
! | GTATTTTGTAGCGAAAAGAG+GGG | - | chr3.2:84134772-84134791 | None:intergenic | 35.0% |
! | GTTTTACCTTTCACTAATGG+AGG | + | chr3.2:84135412-84135431 | MS.gene78692:CDS | 35.0% |
!! | GTGGTTTTACCTTTCACTAA+TGG | + | chr3.2:84135409-84135428 | MS.gene78692:CDS | 35.0% |
!!! | ACATAAAGGTTTTGACTCAC+AGG | - | chr3.2:84135460-84135479 | None:intergenic | 35.0% |
AAGTGGAAGTAGGTGACTTT+AGG | + | chr3.2:84135326-84135345 | MS.gene78692:CDS | 40.0% | |
CAAGCTTCCTCTTGATAAAG+TGG | + | chr3.2:84135309-84135328 | MS.gene78692:CDS | 40.0% | |
CCTACTTCCACTTTATCAAG+AGG | - | chr3.2:84135319-84135338 | None:intergenic | 40.0% | |
CCTCTTGATAAAGTGGAAGT+AGG | + | chr3.2:84135316-84135335 | MS.gene78692:CDS | 40.0% | |
CTTCACCTTGCTTATAAGGA+AGG | - | chr3.2:84135189-84135208 | None:intergenic | 40.0% | |
GCTACAAAGTCTATGTCTGT+TGG | - | chr3.2:84135586-84135605 | None:intergenic | 40.0% | |
GCTTCCGTAAAGTAAAGTTG+CGG | - | chr3.2:84135551-84135570 | None:intergenic | 40.0% | |
TATGTCTGTTGGAAGACTCA+AGG | - | chr3.2:84135575-84135594 | None:intergenic | 40.0% | |
TTCTTCTCACTGGTCATGAA+GGG | - | chr3.2:84135127-84135146 | None:intergenic | 40.0% | |
!! | TAGGTGACTTTAGGATTCCA+AGG | + | chr3.2:84135335-84135354 | MS.gene78692:CDS | 40.0% |
AAAGATGTTTGGCGATGGTG+AGG | - | chr3.2:84134404-84134423 | None:intergenic | 45.0% | |
AAGATGTTTGGCGATGGTGA+GGG | - | chr3.2:84134403-84134422 | None:intergenic | 45.0% | |
ACCGCCGCAACTTTACTTTA+CGG | + | chr3.2:84135544-84135563 | MS.gene78692:CDS | 45.0% | |
AGCACAACTTGGATTGACAG+TGG | - | chr3.2:84134468-84134487 | None:intergenic | 45.0% | |
CAACAACTTCTCGACTTCCT+TGG | + | chr3.2:84134525-84134544 | MS.gene78692:CDS | 45.0% | |
CTTCTTCTCACTGGTCATGA+AGG | - | chr3.2:84135128-84135147 | None:intergenic | 45.0% | |
CTTGCTTATAAGGAAGGCCA+AGG | - | chr3.2:84135183-84135202 | None:intergenic | 45.0% | |
GGAGAAAAGATGTTTGGCGA+TGG | - | chr3.2:84134409-84134428 | None:intergenic | 45.0% | |
GTCAACCCTCCATTAGTGAA+AGG | - | chr3.2:84135421-84135440 | None:intergenic | 45.0% | |
GTCTTCGCCATTCTCAAAGA+CGG | + | chr3.2:84134591-84134610 | MS.gene78692:CDS | 45.0% | |
TATGTTAAAGGAGCTTGGCG+TGG | + | chr3.2:84135390-84135409 | MS.gene78692:CDS | 45.0% | |
TCCGTAAAGTAAAGTTGCGG+CGG | - | chr3.2:84135548-84135567 | None:intergenic | 45.0% | |
TGGGCTGAAAGAGAGACAAA+TGG | + | chr3.2:84134941-84134960 | MS.gene78692:CDS | 45.0% | |
TTGGAATCGGAGGAAGTCAA+GGG | - | chr3.2:84134355-84134374 | None:intergenic | 45.0% | |
! | AACGTTGCTTTGGTTGTTGG+CGG | - | chr3.2:84134379-84134398 | None:intergenic | 45.0% |
! | CTCTTTTGTCGATGGTGTGT+GGG | + | chr3.2:84134638-84134657 | MS.gene78692:CDS | 45.0% |
! | CTTGGCCTTCCTTATAAGCA+AGG | + | chr3.2:84135181-84135200 | MS.gene78692:CDS | 45.0% |
! | GATCGATGGATTTAGAGCCA+AGG | - | chr3.2:84134545-84134564 | None:intergenic | 45.0% |
! | GGAAACGTTGCTTTGGTTGT+TGG | - | chr3.2:84134382-84134401 | None:intergenic | 45.0% |
! | GTCGAGAAGTTGTTGTTGAG+TGG | - | chr3.2:84134520-84134539 | None:intergenic | 45.0% |
! | TCTCTTTTGTCGATGGTGTG+TGG | + | chr3.2:84134637-84134656 | MS.gene78692:CDS | 45.0% |
!! | AGAACTTCTTCCTCTAGGGT+CGG | + | chr3.2:84134973-84134992 | MS.gene78692:CDS | 45.0% |
AACTATCGCCTTTGTTGGGC+AGG | + | chr3.2:84135648-84135667 | MS.gene78692:CDS | 50.0% | |
ACCGGAACTATCGCCTTTGT+TGG | + | chr3.2:84135643-84135662 | MS.gene78692:CDS | 50.0% | |
ATTGAGCACCTGCCCAACAA+AGG | - | chr3.2:84135659-84135678 | None:intergenic | 50.0% | |
CCATCGACAAAAGAGAGACG+AGG | - | chr3.2:84134633-84134652 | None:intergenic | 50.0% | |
CCCAACAAAGGCGATAGTTC+CGG | - | chr3.2:84135647-84135666 | None:intergenic | 50.0% | |
CCGGAACTATCGCCTTTGTT+GGG | + | chr3.2:84135644-84135663 | MS.gene78692:CDS | 50.0% | |
CGATGATGCTGAGCACAACT+TGG | - | chr3.2:84134479-84134498 | None:intergenic | 50.0% | |
GCCAACTTTGCTTGAGAAGC+TGG | + | chr3.2:84135261-84135280 | MS.gene78692:CDS | 50.0% | |
GCCAGCTTCTCAAGCAAAGT+TGG | - | chr3.2:84135265-84135284 | None:intergenic | 50.0% | |
GTAAAGTAAAGTTGCGGCGG+TGG | - | chr3.2:84135545-84135564 | None:intergenic | 50.0% | |
GTTGGAATCGGAGGAAGTCA+AGG | - | chr3.2:84134356-84134375 | None:intergenic | 50.0% | |
TGGTGAGGGAAACGTTGCTT+TGG | - | chr3.2:84134389-84134408 | None:intergenic | 50.0% | |
! | ACGTTGCTTTGGTTGTTGGC+GGG | - | chr3.2:84134378-84134397 | None:intergenic | 50.0% |
! | CCTCGTCTCTCTTTTGTCGA+TGG | + | chr3.2:84134630-84134649 | MS.gene78692:CDS | 50.0% |
! | GAGGAAGTCAAGGGCGTATT+CGG | - | chr3.2:84134346-84134365 | None:intergenic | 50.0% |
! | GGCAGCCCATCTTTTGCATT+TGG | - | chr3.2:84135244-84135263 | None:intergenic | 50.0% |
! | TTTTGTCGATGGTGTGTGGG+TGG | + | chr3.2:84134641-84134660 | MS.gene78692:CDS | 50.0% |
!! | ATCATCGCTGCTGGTTCTGA+GGG | + | chr3.2:84134492-84134511 | MS.gene78692:CDS | 50.0% |
AAGTTGTCGACCGACCCTAG+AGG | - | chr3.2:84134986-84135005 | None:intergenic | 55.0% | |
CAGGTGCTCAATCCTCTTGC+TGG | + | chr3.2:84135667-84135686 | MS.gene78692:CDS | 55.0% | |
! | TGCTTTGGTTGTTGGCGGGT+TGG | - | chr3.2:84134374-84134393 | None:intergenic | 55.0% |
!! | CATCATCGCTGCTGGTTCTG+AGG | + | chr3.2:84134491-84134510 | MS.gene78692:CDS | 55.0% |
!! | GGGAGCACCGTCTTTGAGAA+TGG | - | chr3.2:84134601-84134620 | None:intergenic | 55.0% |
!! | GGTTGTTGGCGGGTTGGAAT+CGG | - | chr3.2:84134368-84134387 | None:intergenic | 55.0% |
GTGCTCAGCATCATCGCTGC+TGG | + | chr3.2:84134483-84134502 | MS.gene78692:CDS | 60.0% | |
!! | TGTTGGCGGGTTGGAATCGG+AGG | - | chr3.2:84134365-84134384 | None:intergenic | 60.0% |
AAAGACGGTGCTCCCGCAGG+TGG | + | chr3.2:84134606-84134625 | MS.gene78692:CDS | 65.0% | |
AAGACGGTGCTCCCGCAGGT+GGG | + | chr3.2:84134607-84134626 | MS.gene78692:CDS | 65.0% | |
AGAGAGACGAGGCCCACCTG+CGG | - | chr3.2:84134622-84134641 | None:intergenic | 65.0% | |
CTCAAAGACGGTGCTCCCGC+AGG | + | chr3.2:84134603-84134622 | MS.gene78692:CDS | 65.0% | |
GAGAGACGAGGCCCACCTGC+GGG | - | chr3.2:84134621-84134640 | None:intergenic | 70.0% | |
GGCGGTGGCTGCAGCAGCTT+TGG | - | chr3.2:84135530-84135549 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 84134309 | 84135693 | 84134309 | ID=MS.gene78692 |
chr3.2 | mRNA | 84134309 | 84135693 | 84134309 | ID=MS.gene78692.t1;Parent=MS.gene78692 |
chr3.2 | exon | 84134309 | 84134752 | 84134309 | ID=MS.gene78692.t1.exon1;Parent=MS.gene78692.t1 |
chr3.2 | CDS | 84134309 | 84134752 | 84134309 | ID=cds.MS.gene78692.t1;Parent=MS.gene78692.t1 |
chr3.2 | exon | 84134911 | 84135693 | 84134911 | ID=MS.gene78692.t1.exon2;Parent=MS.gene78692.t1 |
chr3.2 | CDS | 84134911 | 84135693 | 84134911 | ID=cds.MS.gene78692.t1;Parent=MS.gene78692.t1 |
Gene Sequence |
Protein sequence |