AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78692


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78692.t1 MTR_3g101030 74.757 412 83 5 16 408 20 429 0.0 600
MS.gene78692.t1 MTR_3g101010 79.634 383 76 1 26 408 9 389 0.0 593
MS.gene78692.t1 MTR_3g101050 78.643 398 63 7 14 407 18 397 0.0 580
MS.gene78692.t1 MTR_3g018740 72.063 383 102 3 25 406 8 386 0.0 537
MS.gene78692.t1 MTR_8g027395 68.217 387 117 2 22 408 17 397 0.0 520
MS.gene78692.t1 MTR_4g045707 66.158 393 123 3 19 408 3 388 3.42e-180 507
MS.gene78692.t1 MTR_8g027420 66.150 387 114 3 22 408 6 375 7.52e-179 503
MS.gene78692.t1 MTR_8g461160 65.535 383 130 1 26 406 10 392 9.13e-177 498
MS.gene78692.t1 MTR_3g101180 63.500 400 130 3 19 406 3 398 9.11e-176 496
MS.gene78692.t1 MTR_7g451890 63.117 385 140 1 26 408 18 402 7.27e-173 489
MS.gene78692.t1 MTR_7g047780 63.472 386 137 2 26 408 18 402 5.10e-171 484
MS.gene78692.t1 MTR_7g050750 62.857 385 141 1 26 408 12 396 2.13e-170 482
MS.gene78692.t1 MTR_2g046030 64.767 386 125 4 25 406 8 386 2.54e-170 482
MS.gene78692.t1 MTR_4g088525 65.312 369 124 1 39 407 4 368 2.93e-170 481
MS.gene78692.t1 MTR_3g101130 63.281 384 136 2 26 408 10 389 1.71e-169 480
MS.gene78692.t1 MTR_2g045980 65.285 386 123 4 25 406 8 386 2.03e-169 479
MS.gene78692.t1 MTR_7g050810 62.953 386 139 2 26 408 20 404 8.81e-169 478
MS.gene78692.t1 MTR_4g088535 65.625 384 110 4 20 403 5 366 9.90e-167 473
MS.gene78692.t1 MTR_3g048000 63.969 383 115 5 26 407 31 391 1.97e-166 472
MS.gene78692.t1 MTR_3g015620 62.176 386 116 6 25 406 19 378 1.29e-152 437
MS.gene78692.t1 MTR_3g102920 60.789 380 109 6 30 406 66 408 7.38e-146 421
MS.gene78692.t1 MTR_3g100995 72.835 254 66 2 155 408 14 264 1.22e-133 384
MS.gene78692.t1 MTR_3g101190 55.616 365 95 3 46 408 13 312 4.85e-132 382
MS.gene78692.t1 MTR_3g101200 56.334 371 135 5 38 406 45 390 8.02e-131 382
MS.gene78692.t1 MTR_3g018747 68.846 260 65 3 148 406 9 253 2.04e-120 350
MS.gene78692.t1 MTR_7g050830 55.519 308 106 2 28 315 22 318 1.78e-112 332
MS.gene78692.t1 MTR_3g100010 56.289 318 91 2 45 329 38 340 1.71e-111 330
MS.gene78692.t1 MTR_3g015760 64.000 275 95 2 133 406 8 279 1.00e-109 324
MS.gene78692.t1 MTR_3g111160 70.476 210 59 2 200 408 13 220 1.78e-93 280
MS.gene78692.t1 MTR_3g101110 61.088 239 63 4 148 382 68 280 4.68e-89 271
MS.gene78692.t1 MTR_3g100520 61.712 222 70 3 189 408 1 209 2.25e-87 264
MS.gene78692.t1 MTR_3g114310 41.500 400 209 11 24 408 21 410 2.95e-86 268
MS.gene78692.t1 MTR_2g046410 66.010 203 63 2 208 406 147 347 1.27e-85 265
MS.gene78692.t1 MTR_3g099970 65.306 196 51 2 148 343 20 198 2.96e-84 256
MS.gene78692.t1 MTR_3g101020 63.102 187 42 2 222 408 1 160 1.03e-74 230
MS.gene78692.t1 MTR_3g101150 70.253 158 43 2 254 407 1 158 2.03e-70 219
MS.gene78692.t1 MTR_3g102870 64.286 154 55 0 211 364 1 154 1.53e-63 202
MS.gene78692.t1 MTR_3g111150 59.551 178 46 3 25 202 2 153 7.52e-63 200
MS.gene78692.t1 MTR_3g100990 59.459 148 57 2 26 173 9 153 1.54e-46 167
MS.gene78692.t1 MTR_4g093550 70.732 82 22 1 26 107 10 89 7.53e-29 108
MS.gene78692.t1 MTR_6g046890 62.338 77 26 1 39 115 14 87 1.22e-20 87.8
MS.gene78692.t1 MTR_3g101140 47.581 124 47 4 287 408 9 116 2.39e-20 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78692.t1 AT1G47710 53.665 382 174 3 27 406 10 390 3.47e-145 418
MS.gene78692.t1 AT1G47710 53.665 382 174 3 27 406 37 417 9.69e-145 418
MS.gene78692.t1 AT3G45220 48.223 394 178 6 26 405 9 390 5.43e-125 367
MS.gene78692.t1 AT2G25240 49.219 384 181 7 26 405 9 382 2.00e-121 357
MS.gene78692.t1 AT2G26390 48.593 391 177 7 26 405 9 386 2.90e-120 355
MS.gene78692.t1 AT2G14540 45.052 384 184 6 26 405 37 397 6.90e-97 295
MS.gene78692.t1 AT1G64030 43.264 386 190 6 26 405 9 371 2.00e-96 293
MS.gene78692.t1 AT1G62170 42.162 370 183 5 45 407 88 433 8.89e-96 293
MS.gene78692.t1 AT2G35580 44.000 375 179 9 41 405 18 371 1.24e-90 278
MS.gene78692.t1 AT1G62170 38.710 403 183 6 45 407 88 466 1.11e-88 276
MS.gene78692.t1 AT1G64010 45.413 218 95 4 189 405 1 195 4.61e-57 186
MS.gene78692.t1 AT1G64010 45.545 202 86 4 205 405 3 181 5.92e-51 170
MS.gene78692.t1 AT1G63280 53.043 115 50 2 148 260 8 120 8.38e-34 122
MS.gene78692.t1 AT1G62160 33.632 223 120 5 190 407 21 220 1.29e-30 117
MS.gene78692.t1 AT1G51330 47.748 111 55 2 147 254 30 140 1.52e-23 97.4
MS.gene78692.t1 AT1G64020 35.088 114 71 3 27 139 10 121 7.55e-16 73.9

Find 92 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGACTTGTGGAATATTT+TGG 0.106119 3.2:-84135482 None:intergenic
GCTAATGCACTATACTTTAA+AGG 0.155210 3.2:+84135022 MS.gene78692:CDS
CGAGAAAAGAAGTGAATTTA+TGG 0.176628 3.2:+84134921 MS.gene78692:CDS
TGAAACTTCTGATATGTTAA+AGG 0.194021 3.2:+84135378 MS.gene78692:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 3.2:-84135190 None:intergenic
CTTGTCTTGATGAGATTCTT+TGG 0.271973 3.2:-84134427 None:intergenic
GGCGGTGGCTGCAGCAGCTT+TGG 0.307932 3.2:-84135527 None:intergenic
AAGTGGAAGTAGGTGACTTT+AGG 0.323594 3.2:+84135326 MS.gene78692:CDS
GAGGAAGTCAAGGGCGTATT+CGG 0.323880 3.2:-84134343 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 3.2:+84135261 MS.gene78692:CDS
ATTCAAAAGGTGAAAGTCAT+AGG 0.334305 3.2:-84135083 None:intergenic
TAATGGAGGGTTGACTAAAA+TGG 0.342994 3.2:+84135426 MS.gene78692:CDS
TTTCTTCCAAATGCAAAAGA+TGG 0.344851 3.2:+84135235 MS.gene78692:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.350146 3.2:+84135667 MS.gene78692:CDS
TTCTTTGGAGAAAAGATGTT+TGG 0.357142 3.2:-84134412 None:intergenic
GGTTGTTGGCGGGTTGGAAT+CGG 0.375878 3.2:-84134365 None:intergenic
ACCGCCGCAACTTTACTTTA+CGG 0.390234 3.2:+84135544 MS.gene78692:CDS
ACCGGAACTATCGCCTTTGT+TGG 0.400356 3.2:+84135643 MS.gene78692:CDS
CAACAACTTCTCGACTTCCT+TGG 0.417102 3.2:+84134525 MS.gene78692:CDS
TGAAAGAAGGTTGAAGAGAA+AGG 0.426729 3.2:-84134671 None:intergenic
AACTATCGCCTTTGTTGGGC+AGG 0.426929 3.2:+84135648 MS.gene78692:CDS
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 3.2:+84134968 MS.gene78692:CDS
CCCAACAAAGGCGATAGTTC+CGG 0.429621 3.2:-84135644 None:intergenic
GGAAACGTTGCTTTGGTTGT+TGG 0.432490 3.2:-84134379 None:intergenic
GACACAATTTGCTTGAAAGA+AGG 0.436343 3.2:-84134684 None:intergenic
TCTCTGATCATAAATAAGAA+TGG 0.440676 3.2:-84135613 None:intergenic
TAACTGAGTTTCCATTCAAA+AGG 0.441115 3.2:-84135096 None:intergenic
AACGTTGCTTTGGTTGTTGG+CGG 0.442357 3.2:-84134376 None:intergenic
TTTGAATGGAAACTCAGTTA+AGG 0.443112 3.2:+84135099 MS.gene78692:CDS
CATCATCGCTGCTGGTTCTG+AGG 0.444526 3.2:+84134491 MS.gene78692:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 3.2:+84134969 MS.gene78692:CDS
CTCTGATCATAAATAAGAAT+GGG 0.447141 3.2:-84135612 None:intergenic
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 3.2:+84135309 MS.gene78692:CDS
GAGAAAAGAAGTGAATTTAT+GGG 0.455502 3.2:+84134922 MS.gene78692:CDS
TTCATTGAAGTAAATGAAGA+AGG 0.457204 3.2:+84135502 MS.gene78692:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.460189 3.2:-84134670 None:intergenic
TGCTTTGGTTGTTGGCGGGT+TGG 0.465518 3.2:-84134371 None:intergenic
CTTCTTCTCACTGGTCATGA+AGG 0.470421 3.2:-84135125 None:intergenic
CGATGATGCTGAGCACAACT+TGG 0.475488 3.2:-84134476 None:intergenic
CCGGAACTATCGCCTTTGTT+GGG 0.480048 3.2:+84135644 MS.gene78692:CDS
GTGCTCAGCATCATCGCTGC+TGG 0.482096 3.2:+84134483 MS.gene78692:CDS
AAAGACGGTGCTCCCGCAGG+TGG 0.483007 3.2:+84134606 MS.gene78692:CDS
TGGTGAGGGAAACGTTGCTT+TGG 0.486728 3.2:-84134386 None:intergenic
TTCTTCCAAATGCAAAAGAT+GGG 0.486946 3.2:+84135236 MS.gene78692:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 3.2:-84135262 None:intergenic
GTGTTGTAGTAACTCAGATT+CGG 0.496759 3.2:-84135287 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 3.2:-84135186 None:intergenic
GAGAGACGAGGCCCACCTGC+GGG 0.498754 3.2:-84134618 None:intergenic
TCTGATATGTTAAAGGAGCT+TGG 0.499230 3.2:+84135385 MS.gene78692:CDS
TTACTTCAATGAAAGACTTG+TGG 0.504558 3.2:-84135492 None:intergenic
GGGAGCACCGTCTTTGAGAA+TGG 0.518279 3.2:-84134598 None:intergenic
CTCAAAGACGGTGCTCCCGC+AGG 0.518597 3.2:+84134603 MS.gene78692:CDS
GTAAAGTAAAGTTGCGGCGG+TGG 0.519079 3.2:-84135542 None:intergenic
ATCATCGCTGCTGGTTCTGA+GGG 0.520290 3.2:+84134492 MS.gene78692:CDS
AATAAACTGCTTCTTCTCAC+TGG 0.523013 3.2:-84135134 None:intergenic
TCAAATGAAATATTGAACCT+TGG 0.524127 3.2:-84135352 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 3.2:-84134401 None:intergenic
GCTACAAAGTCTATGTCTGT+TGG 0.529202 3.2:-84135583 None:intergenic
TAGGTGACTTTAGGATTCCA+AGG 0.533810 3.2:+84135335 MS.gene78692:CDS
GAAGAAGTTTAGATGATCGA+TGG 0.536342 3.2:-84134556 None:intergenic
TTCTGTTGATTTCAAGAACA+AGG 0.537281 3.2:+84134731 MS.gene78692:CDS
ATGATCAGAGAAGATTTGAC+CGG 0.538023 3.2:+84135625 MS.gene78692:CDS
TGTTGGCGGGTTGGAATCGG+AGG 0.542527 3.2:-84134362 None:intergenic
GTTGGAATCGGAGGAAGTCA+AGG 0.547443 3.2:-84134353 None:intergenic
ACGTTGCTTTGGTTGTTGGC+GGG 0.547721 3.2:-84134375 None:intergenic
CACTATACTTTAAAGGAGAG+TGG 0.554157 3.2:+84135029 MS.gene78692:CDS
CTTGGCCTTCCTTATAAGCA+AGG 0.559520 3.2:+84135181 MS.gene78692:CDS
GTCAACCCTCCATTAGTGAA+AGG 0.561737 3.2:-84135418 None:intergenic
AAGACGGTGCTCCCGCAGGT+GGG 0.563207 3.2:+84134607 MS.gene78692:CDS
CCTACTTCCACTTTATCAAG+AGG 0.564451 3.2:-84135316 None:intergenic
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 3.2:+84135316 MS.gene78692:CDS
TTCTTCTCACTGGTCATGAA+GGG 0.569786 3.2:-84135124 None:intergenic
TGGGCTGAAAGAGAGACAAA+TGG 0.574537 3.2:+84134941 MS.gene78692:CDS
GTCGAGAAGTTGTTGTTGAG+TGG 0.576826 3.2:-84134517 None:intergenic
TGCTAAGATCATCCAGCAAG+AGG 0.578961 3.2:-84135679 None:intergenic
AGAGAGACGAGGCCCACCTG+CGG 0.584963 3.2:-84134619 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 3.2:-84134400 None:intergenic
ATTGAGCACCTGCCCAACAA+AGG 0.599203 3.2:-84135656 None:intergenic
TTGGAATCGGAGGAAGTCAA+GGG 0.608158 3.2:-84134352 None:intergenic
TATGTCTGTTGGAAGACTCA+AGG 0.610434 3.2:-84135572 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 3.2:+84134973 MS.gene78692:CDS
TGATCATAAATAAGAATGGG+TGG 0.618025 3.2:-84135609 None:intergenic
GTCTTCGCCATTCTCAAAGA+CGG 0.621526 3.2:+84134591 MS.gene78692:CDS
CTTGCTTATAAGGAAGGCCA+AGG 0.627980 3.2:-84135180 None:intergenic
TATGTTAAAGGAGCTTGGCG+TGG 0.637410 3.2:+84135390 MS.gene78692:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 3.2:-84134406 None:intergenic
TCCGTAAAGTAAAGTTGCGG+CGG 0.659110 3.2:-84135545 None:intergenic
GATCGATGGATTTAGAGCCA+AGG 0.665025 3.2:-84134542 None:intergenic
CCATCGACAAAAGAGAGACG+AGG 0.674638 3.2:-84134630 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.702735 3.2:-84134983 None:intergenic
AGCACAACTTGGATTGACAG+TGG 0.707392 3.2:-84134465 None:intergenic
GCTTCCGTAAAGTAAAGTTG+CGG 0.723230 3.2:-84135548 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAATTTTTGATA+TGG + chr3.2:84134880-84134899 MS.gene78692:intron 10.0%
!!! AATTTTTGATATGGTTTTAA+AGG + chr3.2:84134889-84134908 MS.gene78692:intron 15.0%
!! ACAAAATCAAAATCAAAATC+AGG - chr3.2:84134805-84134824 None:intergenic 20.0%
!! AGAACTCAAAACTATATATT+TGG + chr3.2:84134854-84134873 MS.gene78692:intron 20.0%
!! CAAAATCAAAATCAAAATCA+GGG - chr3.2:84134804-84134823 None:intergenic 20.0%
! CTCTGATCATAAATAAGAAT+GGG - chr3.2:84135615-84135634 None:intergenic 25.0%
! GAGAAAAGAAGTGAATTTAT+GGG + chr3.2:84134922-84134941 MS.gene78692:CDS 25.0%
! TCAAATGAAATATTGAACCT+TGG - chr3.2:84135355-84135374 None:intergenic 25.0%
! TCTCTGATCATAAATAAGAA+TGG - chr3.2:84135616-84135635 None:intergenic 25.0%
! TGAAACTTCTGATATGTTAA+AGG + chr3.2:84135378-84135397 MS.gene78692:CDS 25.0%
! TTCATTGAAGTAAATGAAGA+AGG + chr3.2:84135502-84135521 MS.gene78692:CDS 25.0%
!! AATCTGATATTTTCTTGTAG+TGG + chr3.2:84134318-84134337 MS.gene78692:CDS 25.0%
!!! GAATGATAATTTTGATGCTT+CGG + chr3.2:84135051-84135070 MS.gene78692:CDS 25.0%
!!! GGAATATTTTGGAAACATAA+AGG - chr3.2:84135474-84135493 None:intergenic 25.0%
ATTAAAGAACTTCTTCCTCT+AGG + chr3.2:84134968-84134987 MS.gene78692:CDS 30.0%
ATTCAAAAGGTGAAAGTCAT+AGG - chr3.2:84135086-84135105 None:intergenic 30.0%
CGAGAAAAGAAGTGAATTTA+TGG + chr3.2:84134921-84134940 MS.gene78692:CDS 30.0%
GCTAATGCACTATACTTTAA+AGG + chr3.2:84135022-84135041 MS.gene78692:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG - chr3.2:84135099-84135118 None:intergenic 30.0%
TGATCATAAATAAGAATGGG+TGG - chr3.2:84135612-84135631 None:intergenic 30.0%
TTAAAGAACTTCTTCCTCTA+GGG + chr3.2:84134969-84134988 MS.gene78692:CDS 30.0%
TTACTTCAATGAAAGACTTG+TGG - chr3.2:84135495-84135514 None:intergenic 30.0%
TTATCTTCACCTTGCTTATA+AGG - chr3.2:84135193-84135212 None:intergenic 30.0%
TTCTTCCAAATGCAAAAGAT+GGG + chr3.2:84135236-84135255 MS.gene78692:CDS 30.0%
TTTCTTCCAAATGCAAAAGA+TGG + chr3.2:84135235-84135254 MS.gene78692:CDS 30.0%
TTTGAATGGAAACTCAGTTA+AGG + chr3.2:84135099-84135118 MS.gene78692:CDS 30.0%
! GAAAGACTTGTGGAATATTT+TGG - chr3.2:84135485-84135504 None:intergenic 30.0%
! TATGACTTTCACCTTTTGAA+TGG + chr3.2:84135085-84135104 MS.gene78692:CDS 30.0%
! TGTATTTTGTAGCGAAAAGA+GGG - chr3.2:84134773-84134792 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG - chr3.2:84134415-84134434 None:intergenic 30.0%
! TTGTATTTTGTAGCGAAAAG+AGG - chr3.2:84134774-84134793 None:intergenic 30.0%
! TTTTACCTTTCACTAATGGA+GGG + chr3.2:84135413-84135432 MS.gene78692:CDS 30.0%
!! TTCGATGATTTTAATGTCCT+TGG + chr3.2:84135163-84135182 MS.gene78692:CDS 30.0%
!! TTCTGTTGATTTCAAGAACA+AGG + chr3.2:84134731-84134750 MS.gene78692:CDS 30.0%
AATAAACTGCTTCTTCTCAC+TGG - chr3.2:84135137-84135156 None:intergenic 35.0%
ATGATCAGAGAAGATTTGAC+CGG + chr3.2:84135625-84135644 MS.gene78692:CDS 35.0%
CTTGTCTTGATGAGATTCTT+TGG - chr3.2:84134430-84134449 None:intergenic 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG - chr3.2:84134673-84134692 None:intergenic 35.0%
GAAGAAGTTTAGATGATCGA+TGG - chr3.2:84134559-84134578 None:intergenic 35.0%
GTGTTGTAGTAACTCAGATT+CGG - chr3.2:84135290-84135309 None:intergenic 35.0%
TAATGGAGGGTTGACTAAAA+TGG + chr3.2:84135426-84135445 MS.gene78692:CDS 35.0%
TCTGATATGTTAAAGGAGCT+TGG + chr3.2:84135385-84135404 MS.gene78692:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG - chr3.2:84134674-84134693 None:intergenic 35.0%
! CACTATACTTTAAAGGAGAG+TGG + chr3.2:84135029-84135048 MS.gene78692:CDS 35.0%
! GACACAATTTGCTTGAAAGA+AGG - chr3.2:84134687-84134706 None:intergenic 35.0%
! GTATTTTGTAGCGAAAAGAG+GGG - chr3.2:84134772-84134791 None:intergenic 35.0%
! GTTTTACCTTTCACTAATGG+AGG + chr3.2:84135412-84135431 MS.gene78692:CDS 35.0%
!! GTGGTTTTACCTTTCACTAA+TGG + chr3.2:84135409-84135428 MS.gene78692:CDS 35.0%
!!! ACATAAAGGTTTTGACTCAC+AGG - chr3.2:84135460-84135479 None:intergenic 35.0%
AAGTGGAAGTAGGTGACTTT+AGG + chr3.2:84135326-84135345 MS.gene78692:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG + chr3.2:84135309-84135328 MS.gene78692:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG - chr3.2:84135319-84135338 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG + chr3.2:84135316-84135335 MS.gene78692:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG - chr3.2:84135189-84135208 None:intergenic 40.0%
GCTACAAAGTCTATGTCTGT+TGG - chr3.2:84135586-84135605 None:intergenic 40.0%
GCTTCCGTAAAGTAAAGTTG+CGG - chr3.2:84135551-84135570 None:intergenic 40.0%
TATGTCTGTTGGAAGACTCA+AGG - chr3.2:84135575-84135594 None:intergenic 40.0%
TTCTTCTCACTGGTCATGAA+GGG - chr3.2:84135127-84135146 None:intergenic 40.0%
!! TAGGTGACTTTAGGATTCCA+AGG + chr3.2:84135335-84135354 MS.gene78692:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG - chr3.2:84134404-84134423 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG - chr3.2:84134403-84134422 None:intergenic 45.0%
ACCGCCGCAACTTTACTTTA+CGG + chr3.2:84135544-84135563 MS.gene78692:CDS 45.0%
AGCACAACTTGGATTGACAG+TGG - chr3.2:84134468-84134487 None:intergenic 45.0%
CAACAACTTCTCGACTTCCT+TGG + chr3.2:84134525-84134544 MS.gene78692:CDS 45.0%
CTTCTTCTCACTGGTCATGA+AGG - chr3.2:84135128-84135147 None:intergenic 45.0%
CTTGCTTATAAGGAAGGCCA+AGG - chr3.2:84135183-84135202 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG - chr3.2:84134409-84134428 None:intergenic 45.0%
GTCAACCCTCCATTAGTGAA+AGG - chr3.2:84135421-84135440 None:intergenic 45.0%
GTCTTCGCCATTCTCAAAGA+CGG + chr3.2:84134591-84134610 MS.gene78692:CDS 45.0%
TATGTTAAAGGAGCTTGGCG+TGG + chr3.2:84135390-84135409 MS.gene78692:CDS 45.0%
TCCGTAAAGTAAAGTTGCGG+CGG - chr3.2:84135548-84135567 None:intergenic 45.0%
TGGGCTGAAAGAGAGACAAA+TGG + chr3.2:84134941-84134960 MS.gene78692:CDS 45.0%
TTGGAATCGGAGGAAGTCAA+GGG - chr3.2:84134355-84134374 None:intergenic 45.0%
! AACGTTGCTTTGGTTGTTGG+CGG - chr3.2:84134379-84134398 None:intergenic 45.0%
! CTCTTTTGTCGATGGTGTGT+GGG + chr3.2:84134638-84134657 MS.gene78692:CDS 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG + chr3.2:84135181-84135200 MS.gene78692:CDS 45.0%
! GATCGATGGATTTAGAGCCA+AGG - chr3.2:84134545-84134564 None:intergenic 45.0%
! GGAAACGTTGCTTTGGTTGT+TGG - chr3.2:84134382-84134401 None:intergenic 45.0%
! GTCGAGAAGTTGTTGTTGAG+TGG - chr3.2:84134520-84134539 None:intergenic 45.0%
! TCTCTTTTGTCGATGGTGTG+TGG + chr3.2:84134637-84134656 MS.gene78692:CDS 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG + chr3.2:84134973-84134992 MS.gene78692:CDS 45.0%
AACTATCGCCTTTGTTGGGC+AGG + chr3.2:84135648-84135667 MS.gene78692:CDS 50.0%
ACCGGAACTATCGCCTTTGT+TGG + chr3.2:84135643-84135662 MS.gene78692:CDS 50.0%
ATTGAGCACCTGCCCAACAA+AGG - chr3.2:84135659-84135678 None:intergenic 50.0%
CCATCGACAAAAGAGAGACG+AGG - chr3.2:84134633-84134652 None:intergenic 50.0%
CCCAACAAAGGCGATAGTTC+CGG - chr3.2:84135647-84135666 None:intergenic 50.0%
CCGGAACTATCGCCTTTGTT+GGG + chr3.2:84135644-84135663 MS.gene78692:CDS 50.0%
CGATGATGCTGAGCACAACT+TGG - chr3.2:84134479-84134498 None:intergenic 50.0%
GCCAACTTTGCTTGAGAAGC+TGG + chr3.2:84135261-84135280 MS.gene78692:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG - chr3.2:84135265-84135284 None:intergenic 50.0%
GTAAAGTAAAGTTGCGGCGG+TGG - chr3.2:84135545-84135564 None:intergenic 50.0%
GTTGGAATCGGAGGAAGTCA+AGG - chr3.2:84134356-84134375 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTT+TGG - chr3.2:84134389-84134408 None:intergenic 50.0%
! ACGTTGCTTTGGTTGTTGGC+GGG - chr3.2:84134378-84134397 None:intergenic 50.0%
! CCTCGTCTCTCTTTTGTCGA+TGG + chr3.2:84134630-84134649 MS.gene78692:CDS 50.0%
! GAGGAAGTCAAGGGCGTATT+CGG - chr3.2:84134346-84134365 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG - chr3.2:84135244-84135263 None:intergenic 50.0%
! TTTTGTCGATGGTGTGTGGG+TGG + chr3.2:84134641-84134660 MS.gene78692:CDS 50.0%
!! ATCATCGCTGCTGGTTCTGA+GGG + chr3.2:84134492-84134511 MS.gene78692:CDS 50.0%
AAGTTGTCGACCGACCCTAG+AGG - chr3.2:84134986-84135005 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG + chr3.2:84135667-84135686 MS.gene78692:CDS 55.0%
! TGCTTTGGTTGTTGGCGGGT+TGG - chr3.2:84134374-84134393 None:intergenic 55.0%
!! CATCATCGCTGCTGGTTCTG+AGG + chr3.2:84134491-84134510 MS.gene78692:CDS 55.0%
!! GGGAGCACCGTCTTTGAGAA+TGG - chr3.2:84134601-84134620 None:intergenic 55.0%
!! GGTTGTTGGCGGGTTGGAAT+CGG - chr3.2:84134368-84134387 None:intergenic 55.0%
GTGCTCAGCATCATCGCTGC+TGG + chr3.2:84134483-84134502 MS.gene78692:CDS 60.0%
!! TGTTGGCGGGTTGGAATCGG+AGG - chr3.2:84134365-84134384 None:intergenic 60.0%
AAAGACGGTGCTCCCGCAGG+TGG + chr3.2:84134606-84134625 MS.gene78692:CDS 65.0%
AAGACGGTGCTCCCGCAGGT+GGG + chr3.2:84134607-84134626 MS.gene78692:CDS 65.0%
AGAGAGACGAGGCCCACCTG+CGG - chr3.2:84134622-84134641 None:intergenic 65.0%
CTCAAAGACGGTGCTCCCGC+AGG + chr3.2:84134603-84134622 MS.gene78692:CDS 65.0%
GAGAGACGAGGCCCACCTGC+GGG - chr3.2:84134621-84134640 None:intergenic 70.0%
GGCGGTGGCTGCAGCAGCTT+TGG - chr3.2:84135530-84135549 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 84134309 84135693 84134309 ID=MS.gene78692
chr3.2 mRNA 84134309 84135693 84134309 ID=MS.gene78692.t1;Parent=MS.gene78692
chr3.2 exon 84134309 84134752 84134309 ID=MS.gene78692.t1.exon1;Parent=MS.gene78692.t1
chr3.2 CDS 84134309 84134752 84134309 ID=cds.MS.gene78692.t1;Parent=MS.gene78692.t1
chr3.2 exon 84134911 84135693 84134911 ID=MS.gene78692.t1.exon2;Parent=MS.gene78692.t1
chr3.2 CDS 84134911 84135693 84134911 ID=cds.MS.gene78692.t1;Parent=MS.gene78692.t1
Gene Sequence

>MS.gene78692

ATGGTAGCTAATCTGATATTTTCTTGTAGTGGATCCGAATACGCCCTTGACTTCCTCCGATTCCAACCCGCCAACAACCAAAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTCATCAAGACAAGAATATCGTGTTATCGCCACTGTCAATCCAAGTTGTGCTCAGCATCATCGCTGCTGGTTCTGAGGGTGCCACTCAACAACAACTTCTCGACTTCCTTGGCTCTAAATCCATCGATCATCTAAACTTCTTCGTCTCTCAACTCGTCTTCGCCATTCTCAAAGACGGTGCTCCCGCAGGTGGGCCTCGTCTCTCTTTTGTCGATGGTGTGTGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAGCAAATTGTGTCTAATCATTATAAAGCAAATTTGTCTTCTGTTGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCGCTACAAAATACAACTGCATTCCCTGATTTTGATTTTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAAAACTATATATTTGGATAATTGATTTTAATTTTTGATATGGTTTTAAAGGCTATTGAAGCGAGAAAAGAAGTGAATTTATGGGCTGAAAGAGAGACAAATGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAGCGCAGCTAATATTTGCTAATGCACTATACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGAAATGAAAGCCTATGACTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTCCCTTCATGACCAGTGAGAAGAAGCAGTTTATTAGAGTTTTCGATGATTTTAATGTCCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTAAATTCTCTATGTACTTTTTTCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTACAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATTCCAAGGTTCAATATTTCATTTGAACTTGAAACTTCTGATATGTTAAAGGAGCTTGGCGTGGTTTTACCTTTCACTAATGGAGGGTTGACTAAAATGGTGAACTCTCCTGTGAGTCAAAACCTTTATGTTTCCAAAATATTCCACAAGTCTTTCATTGAAGTAAATGAAGAAGGCACCAAAGCTGCTGCAGCCACCGCCGCAACTTTACTTTACGGAAGCTCCTTGAGTCTTCCAACAGACATAGACTTTGTAGCTGACCACCCATTCTTATTTATGATCAGAGAAGATTTGACCGGAACTATCGCCTTTGTTGGGCAGGTGCTCAATCCTCTTGCTGGATGA

Protein sequence

>MS.gene78692.t1

MVANLIFSCSGSEYALDFLRFQPANNQSNVSLTIAKHLFSKESHQDKNIVLSPLSIQVVLSIIAAGSEGATQQQLLDFLGSKSIDHLNFFVSQLVFAILKDGAPAGGPRLSFVDGVWVEKTLSLQPSFKQIVSNHYKANLSSVDFKNKAIEARKEVNLWAERETNGLIKELLPLGSVDNLAQLIFANALYFKGEWNDNFDASEMKAYDFHLLNGNSVKVPFMTSEKKQFIRVFDDFNVLGLPYKQGEDKRKFSMYFFLPNAKDGLPTLLEKLASESELLQHKLPLDKVEVGDFRIPRFNISFELETSDMLKELGVVLPFTNGGLTKMVNSPVSQNLYVSKIFHKSFIEVNEEGTKAAAATAATLLYGSSLSLPTDIDFVADHPFLFMIREDLTGTIAFVGQVLNPLAG