AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78693

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78693.t1 MTR_3g101030 87.209 430 36 3 33 444 1 429 0.0 749
MS.gene78693.t1 MTR_3g101010 77.749 391 81 3 56 444 3 389 0.0 586
MS.gene78693.t1 MTR_3g018740 70.543 387 106 4 59 442 5 386 0.0 533
MS.gene78693.t1 MTR_3g101050 72.040 397 88 8 52 443 19 397 0.0 527
MS.gene78693.t1 MTR_4g045707 69.634 382 110 4 65 444 11 388 0.0 523
MS.gene78693.t1 MTR_8g027395 65.915 399 126 4 48 444 7 397 0.0 515
MS.gene78693.t1 MTR_8g461160 64.872 390 132 3 57 442 4 392 1.04e-175 497
MS.gene78693.t1 MTR_3g101180 64.232 397 131 5 56 442 3 398 3.55e-174 493
MS.gene78693.t1 MTR_8g027420 65.206 388 115 5 59 444 6 375 1.01e-172 489
MS.gene78693.t1 MTR_7g451890 62.663 383 139 2 66 444 20 402 1.15e-172 490
MS.gene78693.t1 MTR_7g047780 63.446 383 136 2 66 444 20 402 6.83e-171 485
MS.gene78693.t1 MTR_3g048000 64.136 382 112 6 64 442 31 390 6.69e-168 477
MS.gene78693.t1 MTR_4g088525 65.668 367 118 3 79 443 8 368 4.45e-167 474
MS.gene78693.t1 MTR_7g050750 61.619 383 143 2 66 444 14 396 1.29e-166 474
MS.gene78693.t1 MTR_7g050810 62.078 385 138 3 66 444 22 404 3.01e-166 474
MS.gene78693.t1 MTR_3g101130 61.804 377 141 2 69 444 15 389 9.51e-165 469
MS.gene78693.t1 MTR_2g046030 63.333 390 129 7 59 442 5 386 2.82e-162 463
MS.gene78693.t1 MTR_2g045980 63.590 390 128 7 59 442 5 386 1.13e-161 461
MS.gene78693.t1 MTR_4g088535 63.636 385 115 6 57 439 5 366 1.92e-161 461
MS.gene78693.t1 MTR_3g015620 62.113 388 118 6 59 442 16 378 8.04e-151 433
MS.gene78693.t1 MTR_3g102920 57.784 379 120 5 68 442 66 408 1.77e-138 403
MS.gene78693.t1 MTR_3g100995 72.941 255 68 1 190 444 11 264 3.18e-136 392
MS.gene78693.t1 MTR_3g101200 52.911 395 157 5 50 442 23 390 8.70e-131 383
MS.gene78693.t1 MTR_3g101190 53.425 365 101 4 84 444 13 312 3.41e-123 360
MS.gene78693.t1 MTR_3g018747 69.615 260 61 3 186 442 9 253 6.42e-122 355
MS.gene78693.t1 MTR_7g050830 56.169 308 104 2 66 353 22 318 3.88e-113 335
MS.gene78693.t1 MTR_3g100010 55.937 320 93 2 85 371 40 344 1.26e-112 335
MS.gene78693.t1 MTR_3g015760 62.782 266 97 2 178 442 15 279 1.89e-105 314
MS.gene78693.t1 MTR_3g111160 68.095 210 62 2 238 444 13 220 1.15e-91 277
MS.gene78693.t1 MTR_3g100520 59.910 222 72 3 227 444 1 209 4.85e-87 265
MS.gene78693.t1 MTR_3g099970 66.154 195 49 2 186 379 20 198 3.99e-84 256
MS.gene78693.t1 MTR_3g114310 40.648 401 211 12 61 444 20 410 1.60e-83 263
MS.gene78693.t1 MTR_3g101110 58.475 236 66 4 189 418 71 280 1.62e-81 253
MS.gene78693.t1 MTR_2g046410 62.621 206 69 4 243 442 144 347 2.61e-79 249
MS.gene78693.t1 MTR_3g101020 64.324 185 41 2 260 444 1 160 6.12e-76 234
MS.gene78693.t1 MTR_3g111150 59.322 177 46 2 64 240 3 153 5.59e-61 196
MS.gene78693.t1 MTR_3g101150 61.392 158 55 2 292 443 1 158 4.14e-59 191
MS.gene78693.t1 MTR_3g102870 57.233 159 66 1 251 407 3 161 5.70e-56 183
MS.gene78693.t1 MTR_3g100990 64.844 128 42 2 59 186 5 129 9.63e-44 160
MS.gene78693.t1 MTR_4g093550 62.353 85 30 1 61 145 7 89 3.05e-25 99.4
MS.gene78693.t1 MTR_6g046890 61.842 76 26 1 78 153 15 87 4.13e-19 84.0
MS.gene78693.t1 MTR_3g101140 64.615 65 22 1 381 444 52 116 3.64e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78693.t1 AT1G47710 51.980 404 186 4 43 442 18 417 1.14e-147 427
MS.gene78693.t1 AT1G47710 53.141 382 174 3 65 442 10 390 2.60e-147 425
MS.gene78693.t1 AT3G45220 47.558 389 186 6 64 441 9 390 1.17e-121 360
MS.gene78693.t1 AT2G25240 48.438 384 182 7 64 441 9 382 1.71e-117 349
MS.gene78693.t1 AT2G26390 46.770 387 188 6 64 441 9 386 5.36e-114 340
MS.gene78693.t1 AT2G14540 44.118 408 196 7 40 441 16 397 3.52e-102 310
MS.gene78693.t1 AT1G62170 44.565 368 175 5 83 443 88 433 6.04e-102 311
MS.gene78693.t1 AT1G64030 43.411 387 192 7 61 441 6 371 3.35e-97 297
MS.gene78693.t1 AT2G35580 45.187 374 174 10 79 441 18 371 1.01e-96 295
MS.gene78693.t1 AT1G62170 40.898 401 175 6 83 443 88 466 4.88e-95 294
MS.gene78693.t1 AT1G64010 47.222 216 92 4 227 441 1 195 4.10e-63 202
MS.gene78693.t1 AT1G64010 46.766 201 85 4 242 441 2 181 3.45e-56 184
MS.gene78693.t1 AT1G62160 41.209 182 84 4 264 443 60 220 1.78e-36 134
MS.gene78693.t1 AT1G63280 57.391 115 45 2 186 298 8 120 3.30e-36 129
MS.gene78693.t1 AT1G51330 51.351 111 51 2 185 292 30 140 2.92e-26 105
MS.gene78693.t1 AT1G64020 31.707 123 81 3 56 177 1 121 3.50e-15 72.4

Find 95 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAACTTTGCTTGAGAAAT+TGG 0.152643 3.2:+84112224 MS.gene78693:CDS
ATTAGACACAATTTGTTTAA+AGG 0.202108 3.2:-84111661 None:intergenic
TGGCCAAAGAAGTGAATTTA+TGG 0.229209 3.2:+84111884 MS.gene78693:CDS
AGCCCATAAATTCACTTCTT+TGG 0.263090 3.2:-84111887 None:intergenic
CTTGTTCCGATGAGATTCTT+TGG 0.294656 3.2:-84111400 None:intergenic
CCAAGGTTCAATATTTCATT+TGG 0.296966 3.2:+84112315 MS.gene78693:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 3.2:+84112624 MS.gene78693:CDS
GAGGAAGAAGTTCTTTAATA+AGG 0.332409 3.2:-84111927 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.337942 3.2:-84112484 None:intergenic
TTTCTTCCAAATGCAAAAGA+TGG 0.344851 3.2:+84112198 MS.gene78693:CDS
TTCTTTGGAGAAAAGATGTT+TGG 0.357142 3.2:-84111385 None:intergenic
CAATGGAGGTCTGACTAAAA+TGG 0.358287 3.2:+84112389 MS.gene78693:CDS
GAGTGGAAGTAGGCGACTTT+AGG 0.364214 3.2:+84112289 MS.gene78693:CDS
TTATCTTCGCCTTGCTTGTA+AGG 0.368930 3.2:-84112153 None:intergenic
ATGGTGGTTGTTGGCGGATT+CGG 0.388527 3.2:-84111340 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 3.2:+84112600 MS.gene78693:CDS
GCCAATTTCTCAAGCAAAGT+TGG 0.399047 3.2:-84112225 None:intergenic
ATATCGCTCGGAGTTGTATT+CGG 0.407795 3.2:-84111270 None:intergenic
AAAGGAAGGCTGAAGAGAAA+TGG 0.417918 3.2:-84111643 None:intergenic
GATGTTGAGTGGGATCGATT+TGG 0.424463 3.2:-84111293 None:intergenic
AATGACGGAGACGAGCTTAG+AGG 0.426551 3.2:-84111553 None:intergenic
CAAATGAAATATTGAACCTT+GGG 0.426942 3.2:-84112314 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 3.2:+84112605 MS.gene78693:CDS
TCTCTAATCATAAACAAGAA+AGG 0.443816 3.2:-84112570 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 3.2:+84112459 MS.gene78693:CDS
TAACCGAGTTTCCATTCAAA+AGG 0.458909 3.2:-84112059 None:intergenic
CTTCGCCTTGCTTGTAAGGA+AGG 0.459901 3.2:-84112149 None:intergenic
AACGCTGCTATGGTGGTTGT+TGG 0.459988 3.2:-84111349 None:intergenic
GTTGAGTTGATCGGTGGAGT+TGG 0.460115 3.2:-84111523 None:intergenic
CTCTAATCATAAACAAGAAA+GGG 0.468439 3.2:-84112569 None:intergenic
CGATGATGCTTAGTACAACT+TGG 0.469268 3.2:-84111449 None:intergenic
GGCCAAAGAAGTGAATTTAT+GGG 0.474970 3.2:+84111885 MS.gene78693:CDS
GTTGATCGGTGGAGTTGGAT+TGG 0.478007 3.2:-84111518 None:intergenic
CTCAAAGACGGTGCTCCCGC+TGG 0.478601 3.2:+84111576 MS.gene78693:CDS
ATGATTAGAGAAGAATTGAC+TGG 0.486911 3.2:+84112582 MS.gene78693:CDS
TTCTTCCAAATGCAAAAGAT+GGG 0.486946 3.2:+84112199 MS.gene78693:CDS
CACGAAGAGCGTGAAGTAGC+AGG 0.491414 3.2:-84111199 None:intergenic
TTCTTCCTTACGAGTCATGA+AGG 0.493936 3.2:-84112088 None:intergenic
GACACAATTTGTTTAAAGGA+AGG 0.503508 3.2:-84111657 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 3.2:+84112625 MS.gene78693:CDS
ATCATCGCTGCTGGCTCTGA+CGG 0.503940 3.2:+84111465 MS.gene78693:CDS
GATCGGTGGAGTTGGATTGG+AGG 0.508691 3.2:-84111515 None:intergenic
TGCATTAGCAATGATTAGCC+TGG 0.510550 3.2:-84111971 None:intergenic
GTACTAAGCATCATCGCTGC+TGG 0.512015 3.2:+84111456 MS.gene78693:CDS
CCAAATGAAATATTGAACCT+TGG 0.513068 3.2:-84112315 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 3.2:-84111374 None:intergenic
GGAGACGAGCTTAGAGGCGA+AGG 0.528835 3.2:-84111547 None:intergenic
GCTGCTATGGTGGTTGTTGG+CGG 0.529517 3.2:-84111346 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.531637 3.2:-84112540 None:intergenic
AGTACAACTTGGAGCGAAAG+TGG 0.534886 3.2:-84111438 None:intergenic
CTTGGCCTTCCTTACAAGCA+AGG 0.534905 3.2:+84112144 MS.gene78693:CDS
GAGAGACGAGGTCCTCCAGC+GGG 0.535745 3.2:-84111591 None:intergenic
TTCTGTTGATTTCAAGAACA+AGG 0.539763 3.2:+84111704 MS.gene78693:CDS
TGTTCCCTTCATGACTCGTA+AGG 0.541335 3.2:+84112083 MS.gene78693:CDS
TCTGATATGCTGAAGGAGCT+AGG 0.542423 3.2:+84112348 MS.gene78693:CDS
TGGGCTGCAAAAGAGACAAA+TGG 0.547165 3.2:+84111904 MS.gene78693:CDS
CACTATACTTCAAAGGAATG+TGG 0.548921 3.2:+84111992 MS.gene78693:CDS
AAGTAGCAGGCAAGGTCGAT+TGG 0.554084 3.2:-84111186 None:intergenic
TTAAAGAACTTCTTCCTCCA+CGG 0.555249 3.2:+84111932 MS.gene78693:CDS
GCTAATGCACTATACTTCAA+AGG 0.558208 3.2:+84111985 MS.gene78693:CDS
CGCTAAAATCACCCAGCAAG+AGG 0.568564 3.2:-84112636 None:intergenic
GAGAAGCTGCTGATGTTGAG+TGG 0.568947 3.2:-84111304 None:intergenic
GTCAGACCTCCATTGGTGAA+AGG 0.571927 3.2:-84112381 None:intergenic
TGGTGAGGGAAACGCTGCTA+TGG 0.575851 3.2:-84111359 None:intergenic
AGAGCGTGAAGTAGCAGGCA+AGG 0.577102 3.2:-84111194 None:intergenic
TGTTGGCGGATTCGGATCGA+AGG 0.581182 3.2:-84111332 None:intergenic
AAAGACGGTGCTCCCGCTGG+AGG 0.583396 3.2:+84111579 MS.gene78693:CDS
GTCTCCGTCATTCTCAAAGA+CGG 0.586205 3.2:+84111564 MS.gene78693:CDS
AAGATGTTTGGCGATGGTGA+GGG 0.596429 3.2:-84111373 None:intergenic
CCACATGATAGAGTGGAAGT+AGG 0.598991 3.2:+84112279 MS.gene78693:CDS
TAGTCGAGTTGGAAAACTCA+TGG 0.599825 3.2:-84112529 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 3.2:-84111532 None:intergenic
TAGGCGACTTTAGGATCCCA+AGG 0.602547 3.2:+84112298 MS.gene78693:CDS
TGAAACTTCTGATATGCTGA+AGG 0.602682 3.2:+84112341 MS.gene78693:CDS
AGTGATTACTTCAGCTGCGG+TGG 0.607613 3.2:-84112499 None:intergenic
GTCAAGAAGCTGTTGTTGTG+TGG 0.616691 3.2:-84111490 None:intergenic
AGAAGCTGCTGATGTTGAGT+GGG 0.617202 3.2:-84111303 None:intergenic
GGATCGATTTGGATATCGCT+CGG 0.618610 3.2:-84111282 None:intergenic
TCTTCCTTACGAGTCATGAA+GGG 0.620041 3.2:-84112087 None:intergenic
AGAACTTCTTCCTCCACGGT+CGG 0.622745 3.2:+84111936 MS.gene78693:CDS
AGAGAGACGAGGTCCTCCAG+CGG 0.627432 3.2:-84111592 None:intergenic
CAAGCTTCCACATGATAGAG+TGG 0.627897 3.2:+84112272 MS.gene78693:CDS
GGTTTGAAAGGCAAGTGAAG+TGG 0.629370 3.2:+84111864 MS.gene78693:intron
GTTAAGCTGTTAACCGACCG+TGG 0.638349 3.2:-84111949 None:intergenic
TAATCATAAACAAGAAAGGG+TGG 0.640706 3.2:-84112566 None:intergenic
GGTCGGTTAACAGCTTAACC+AGG 0.645456 3.2:+84111953 MS.gene78693:CDS
TGAGGGAAACGCTGCTATGG+TGG 0.653513 3.2:-84111356 None:intergenic
CCTACTTCCACTCTATCATG+TGG 0.655871 3.2:-84112279 None:intergenic
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 3.2:-84111379 None:intergenic
GCTAGTGATTACTTCAGCTG+CGG 0.657209 3.2:-84112502 None:intergenic
AGCACCGTCTTTGAGAATGA+CGG 0.659705 3.2:-84111568 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 3.2:+84112353 MS.gene78693:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.698626 3.2:-84111529 None:intergenic
CCATCGACAAAAGAGAGACG+AGG 0.708769 3.2:-84111603 None:intergenic
AAGCTGTTAACCGACCGTGG+AGG 0.782630 3.2:-84111946 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAAATTTTAACAAAATCA+GGG - chr3.2:84111777-84111796 None:intergenic 15.0%
!!! ATTGATTTTGAATTTTGATA+TGG + chr3.2:84111843-84111862 MS.gene78693:intron 15.0%
!!! TACAAAATTTTAACAAAATC+AGG - chr3.2:84111778-84111797 None:intergenic 15.0%
!!! ATTAGACACAATTTGTTTAA+AGG - chr3.2:84111664-84111683 None:intergenic 20.0%
!!! GAATGATTTTAGAAATACAT+AGG - chr3.2:84112431-84112450 None:intergenic 20.0%
! CAAATGAAATATTGAACCTT+GGG - chr3.2:84112317-84112336 None:intergenic 25.0%
! CTCTAATCATAAACAAGAAA+GGG - chr3.2:84112572-84112591 None:intergenic 25.0%
! TCTCTAATCATAAACAAGAA+AGG - chr3.2:84112573-84112592 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG + chr3.2:84112459-84112478 MS.gene78693:CDS 25.0%
!! TATGATTTTCACCTTTTGAA+TGG + chr3.2:84112048-84112067 MS.gene78693:CDS 25.0%
!!! GAATTTTGATATGGTTTGAA+AGG + chr3.2:84111852-84111871 MS.gene78693:intron 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG + chr3.2:84112126-84112145 MS.gene78693:CDS 25.0%
ATGATTAGAGAAGAATTGAC+TGG + chr3.2:84112582-84112601 MS.gene78693:CDS 30.0%
CCAAATGAAATATTGAACCT+TGG - chr3.2:84112318-84112337 None:intergenic 30.0%
CCAAGGTTCAATATTTCATT+TGG + chr3.2:84112315-84112334 MS.gene78693:CDS 30.0%
GAGGAAGAAGTTCTTTAATA+AGG - chr3.2:84111930-84111949 None:intergenic 30.0%
TAATCATAAACAAGAAAGGG+TGG - chr3.2:84112569-84112588 None:intergenic 30.0%
TTCTTCCAAATGCAAAAGAT+GGG + chr3.2:84112199-84112218 MS.gene78693:CDS 30.0%
TTTCTTCCAAATGCAAAAGA+TGG + chr3.2:84112198-84112217 MS.gene78693:CDS 30.0%
! GACACAATTTGTTTAAAGGA+AGG - chr3.2:84111660-84111679 None:intergenic 30.0%
! GTATTCGGTATCATGATTTT+TGG - chr3.2:84111258-84111277 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG - chr3.2:84111388-84111407 None:intergenic 30.0%
! TTTTCTCCAAAGAATCTCAT+CGG + chr3.2:84111394-84111413 MS.gene78693:CDS 30.0%
!! TTCTGTTGATTTCAAGAACA+AGG + chr3.2:84111704-84111723 MS.gene78693:CDS 30.0%
AACAATCATCTTTGTTGGAC+AGG + chr3.2:84112605-84112624 MS.gene78693:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG + chr3.2:84112600-84112619 MS.gene78693:CDS 35.0%
AGCCCATAAATTCACTTCTT+TGG - chr3.2:84111890-84111909 None:intergenic 35.0%
CACTATACTTCAAAGGAATG+TGG + chr3.2:84111992-84112011 MS.gene78693:CDS 35.0%
GCTAATGCACTATACTTCAA+AGG + chr3.2:84111985-84112004 MS.gene78693:CDS 35.0%
GGCCAAAGAAGTGAATTTAT+GGG + chr3.2:84111885-84111904 MS.gene78693:CDS 35.0%
TAACCGAGTTTCCATTCAAA+AGG - chr3.2:84112062-84112081 None:intergenic 35.0%
TGAAACTTCTGATATGCTGA+AGG + chr3.2:84112341-84112360 MS.gene78693:CDS 35.0%
TGGCCAAAGAAGTGAATTTA+TGG + chr3.2:84111884-84111903 MS.gene78693:CDS 35.0%
TTAAAGAACTTCTTCCTCCA+CGG + chr3.2:84111932-84111951 MS.gene78693:CDS 35.0%
! TCACCTTTTGAATGGAAACT+CGG + chr3.2:84112056-84112075 MS.gene78693:CDS 35.0%
AAAGGAAGGCTGAAGAGAAA+TGG - chr3.2:84111646-84111665 None:intergenic 40.0%
ATATCGCTCGGAGTTGTATT+CGG - chr3.2:84111273-84111292 None:intergenic 40.0%
CAATGGAGGTCTGACTAAAA+TGG + chr3.2:84112389-84112408 MS.gene78693:CDS 40.0%
CGATGATGCTTAGTACAACT+TGG - chr3.2:84111452-84111471 None:intergenic 40.0%
CTTGTTCCGATGAGATTCTT+TGG - chr3.2:84111403-84111422 None:intergenic 40.0%
GCCAACTTTGCTTGAGAAAT+TGG + chr3.2:84112224-84112243 MS.gene78693:CDS 40.0%
GCCAATTTCTCAAGCAAAGT+TGG - chr3.2:84112228-84112247 None:intergenic 40.0%
TCTTCCTTACGAGTCATGAA+GGG - chr3.2:84112090-84112109 None:intergenic 40.0%
TTATCTTCGCCTTGCTTGTA+AGG - chr3.2:84112156-84112175 None:intergenic 40.0%
TTCTTCCTTACGAGTCATGA+AGG - chr3.2:84112091-84112110 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG + chr3.2:84112375-84112394 MS.gene78693:CDS 40.0%
! TGCATTAGCAATGATTAGCC+TGG - chr3.2:84111974-84111993 None:intergenic 40.0%
!! CATTTTAGTCAGACCTCCAT+TGG - chr3.2:84112391-84112410 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG + chr3.2:84112372-84112391 MS.gene78693:CDS 40.0%
!! TAGTCGAGTTGGAAAACTCA+TGG - chr3.2:84112532-84112551 None:intergenic 40.0%
AAAGATGTTTGGCGATGGTG+AGG - chr3.2:84111377-84111396 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG - chr3.2:84111376-84111395 None:intergenic 45.0%
AGAAGCTGCTGATGTTGAGT+GGG - chr3.2:84111306-84111325 None:intergenic 45.0%
AGTACAACTTGGAGCGAAAG+TGG - chr3.2:84111441-84111460 None:intergenic 45.0%
CAAGCTTCCACATGATAGAG+TGG + chr3.2:84112272-84112291 MS.gene78693:CDS 45.0%
CCACATGATAGAGTGGAAGT+AGG + chr3.2:84112279-84112298 MS.gene78693:CDS 45.0%
CCTACTTCCACTCTATCATG+TGG - chr3.2:84112282-84112301 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG - chr3.2:84111296-84111315 None:intergenic 45.0%
GCTACAAAGTCTAGTCGAGT+TGG - chr3.2:84112543-84112562 None:intergenic 45.0%
GCTAGTGATTACTTCAGCTG+CGG - chr3.2:84112505-84112524 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG - chr3.2:84111382-84111401 None:intergenic 45.0%
GGTTTGAAAGGCAAGTGAAG+TGG + chr3.2:84111864-84111883 MS.gene78693:intron 45.0%
GTCAAGAAGCTGTTGTTGTG+TGG - chr3.2:84111493-84111512 None:intergenic 45.0%
GTCTCCGTCATTCTCAAAGA+CGG + chr3.2:84111564-84111583 MS.gene78693:CDS 45.0%
TCTGATATGCTGAAGGAGCT+AGG + chr3.2:84112348-84112367 MS.gene78693:CDS 45.0%
TGGGCTGCAAAAGAGACAAA+TGG + chr3.2:84111904-84111923 MS.gene78693:CDS 45.0%
TGTTCCCTTCATGACTCGTA+AGG + chr3.2:84112083-84112102 MS.gene78693:CDS 45.0%
! AGCACCGTCTTTGAGAATGA+CGG - chr3.2:84111571-84111590 None:intergenic 45.0%
! CTCTTTTGTCGATGGTGTGT+GGG + chr3.2:84111611-84111630 MS.gene78693:CDS 45.0%
! TCTCTTTTGTCGATGGTGTG+TGG + chr3.2:84111610-84111629 MS.gene78693:CDS 45.0%
!! GGATCGATTTGGATATCGCT+CGG - chr3.2:84111285-84111304 None:intergenic 45.0%
AACGCTGCTATGGTGGTTGT+TGG - chr3.2:84111352-84111371 None:intergenic 50.0%
AAGTAGCAGGCAAGGTCGAT+TGG - chr3.2:84111189-84111208 None:intergenic 50.0%
AGAACTTCTTCCTCCACGGT+CGG + chr3.2:84111936-84111955 MS.gene78693:CDS 50.0%
AGGTGCTCAATCCTCTTGCT+GGG + chr3.2:84112625-84112644 MS.gene78693:CDS 50.0%
AGTGATTACTTCAGCTGCGG+TGG - chr3.2:84112502-84112521 None:intergenic 50.0%
CCATCGACAAAAGAGAGACG+AGG - chr3.2:84111606-84111625 None:intergenic 50.0%
CTTCGCCTTGCTTGTAAGGA+AGG - chr3.2:84112152-84112171 None:intergenic 50.0%
GAGAAGCTGCTGATGTTGAG+TGG - chr3.2:84111307-84111326 None:intergenic 50.0%
GAGTGGAAGTAGGCGACTTT+AGG + chr3.2:84112289-84112308 MS.gene78693:CDS 50.0%
GGTCGGTTAACAGCTTAACC+AGG + chr3.2:84111953-84111972 MS.gene78693:CDS 50.0%
GTACTAAGCATCATCGCTGC+TGG + chr3.2:84111456-84111475 MS.gene78693:CDS 50.0%
GTCAGACCTCCATTGGTGAA+AGG - chr3.2:84112384-84112403 None:intergenic 50.0%
GTTAAGCTGTTAACCGACCG+TGG - chr3.2:84111952-84111971 None:intergenic 50.0%
GTTGATCGGTGGAGTTGGAT+TGG - chr3.2:84111521-84111540 None:intergenic 50.0%
! AATGACGGAGACGAGCTTAG+AGG - chr3.2:84111556-84111575 None:intergenic 50.0%
! CCTCGTCTCTCTTTTGTCGA+TGG + chr3.2:84111603-84111622 MS.gene78693:CDS 50.0%
! CTTGGCCTTCCTTACAAGCA+AGG + chr3.2:84112144-84112163 MS.gene78693:CDS 50.0%
! GGCAGCCCATCTTTTGCATT+TGG - chr3.2:84112207-84112226 None:intergenic 50.0%
! TTTTGTCGATGGTGTGTGGG+TGG + chr3.2:84111614-84111633 MS.gene78693:CDS 50.0%
!! ATGGTGGTTGTTGGCGGATT+CGG - chr3.2:84111343-84111362 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG - chr3.2:84111532-84111551 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG - chr3.2:84111535-84111554 None:intergenic 50.0%
!! GTTGAGTTGATCGGTGGAGT+TGG - chr3.2:84111526-84111545 None:intergenic 50.0%
!! TAGGCGACTTTAGGATCCCA+AGG + chr3.2:84112298-84112317 MS.gene78693:CDS 50.0%
AAGCTGTTAACCGACCGTGG+AGG - chr3.2:84111949-84111968 None:intergenic 55.0%
AGAGCGTGAAGTAGCAGGCA+AGG - chr3.2:84111197-84111216 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG + chr3.2:84112624-84112643 MS.gene78693:CDS 55.0%
GCTGCTATGGTGGTTGTTGG+CGG - chr3.2:84111349-84111368 None:intergenic 55.0%
TATGCTGAAGGAGCTAGGCG+TGG + chr3.2:84112353-84112372 MS.gene78693:CDS 55.0%
TGAGGGAAACGCTGCTATGG+TGG - chr3.2:84111359-84111378 None:intergenic 55.0%
TGGTGAGGGAAACGCTGCTA+TGG - chr3.2:84111362-84111381 None:intergenic 55.0%
! CACGAAGAGCGTGAAGTAGC+AGG - chr3.2:84111202-84111221 None:intergenic 55.0%
! GATCGGTGGAGTTGGATTGG+AGG - chr3.2:84111518-84111537 None:intergenic 55.0%
!! ATCATCGCTGCTGGCTCTGA+CGG + chr3.2:84111465-84111484 MS.gene78693:CDS 55.0%
!! TGTTGGCGGATTCGGATCGA+AGG - chr3.2:84111335-84111354 None:intergenic 55.0%
AGAGAGACGAGGTCCTCCAG+CGG - chr3.2:84111595-84111614 None:intergenic 60.0%
GGAGACGAGCTTAGAGGCGA+AGG - chr3.2:84111550-84111569 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG - chr3.2:84112487-84112506 None:intergenic 60.0%
AAAGACGGTGCTCCCGCTGG+AGG + chr3.2:84111579-84111598 MS.gene78693:CDS 65.0%
CTCAAAGACGGTGCTCCCGC+TGG + chr3.2:84111576-84111595 MS.gene78693:CDS 65.0%
GAGAGACGAGGTCCTCCAGC+GGG - chr3.2:84111594-84111613 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 84111168 84112650 84111168 ID=MS.gene78693
chr3.2 mRNA 84111168 84112650 84111168 ID=MS.gene78693.t1;Parent=MS.gene78693
chr3.2 exon 84111168 84111725 84111168 ID=MS.gene78693.t1.exon1;Parent=MS.gene78693.t1
chr3.2 CDS 84111168 84111725 84111168 ID=cds.MS.gene78693.t1;Parent=MS.gene78693.t1
chr3.2 exon 84111874 84112650 84111874 ID=MS.gene78693.t1.exon2;Parent=MS.gene78693.t1
chr3.2 CDS 84111874 84112650 84111874 ID=cds.MS.gene78693.t1;Parent=MS.gene78693.t1
Gene Sequence

>MS.gene78693

ATGAAGTTTTCTCGGAAACCAATCGACCTTGCCTGCTACTTCACGCTCTTCGTGTGCAACATCATGCTTTGTTTAGTCATGCTCGCTCCAAAAATCATGATACCGAATACAACTCCGAGCGATATCCAAATCGATCCCACTCAACATCAGCAGCTTCTCGACTTCCTTCGATCCGAATCCGCCAACAACCACCATAGCAGCGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTCATCGGAACAAGAACATTGTGTTATCGCCACTTTCGCTCCAAGTTGTACTAAGCATCATCGCTGCTGGCTCTGACGGCTCCACACAACAACAGCTTCTTGACTTCCTCCAATCCAACTCCACCGATCAACTCAACTCCTTCGCCTCTAAGCTCGTCTCCGTCATTCTCAAAGACGGTGCTCCCGCTGGAGGACCTCGTCTCTCTTTTGTCGATGGTGTGTGGGTGGAAAAAACCATTTCTCTTCAGCCTTCCTTTAAACAAATTGTGTCTAATGATTATAAAGCAAATTTGTATTCTGTTGATTTCAAGAACAAGGTATGTTTCTATATCTGCTCTCTTTTCACTACAAAATTCAAATGCATGCCCTGATTTTGTTAAAATTTTGTATTGCAATACTTGTGAAAAGAACTCAACTTATTATCTATTTGAATAATTGATTTTGAATTTTGATATGGTTTGAAAGGCAAGTGAAGTGGCCAAAGAAGTGAATTTATGGGCTGCAAAAGAGACAAATGGCCTTATTAAAGAACTTCTTCCTCCACGGTCGGTTAACAGCTTAACCAGGCTAATCATTGCTAATGCACTATACTTCAAAGGAATGTGGAATGATAAGTTTGATGCTTCGAAAACGAAAGACTATGATTTTCACCTTTTGAATGGAAACTCGGTTAATGTTCCCTTCATGACTCGTAAGGAAGAACAATATATTAGAGCTTTCGATGATTTTAAAGTTCTTGGCCTTCCTTACAAGCAAGGCGAAGATAAGCGTCAATTTACTATGTACTTTTTTCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAATTGGCTTCTGAATCTGAGTCACTAAAACACAAGCTTCCACATGATAGAGTGGAAGTAGGCGACTTTAGGATCCCAAGGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCACCAATGGAGGTCTGACTAAAATGGTGAACTCTACTCAAAACCTATGTATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCAGCTGAAGTAATCACTAGCAGTGCCATGAGTTTTCCAACTCGACTAGACTTTGTAGCTGACCACCCTTTCTTGTTTATGATTAGAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene78693.t1

MKFSRKPIDLACYFTLFVCNIMLCLVMLAPKIMIPNTTPSDIQIDPTQHQQLLDFLRSESANNHHSSVSLTIAKHLFSKESHRNKNIVLSPLSLQVVLSIIAAGSDGSTQQQLLDFLQSNSTDQLNSFASKLVSVILKDGAPAGGPRLSFVDGVWVEKTISLQPSFKQIVSNDYKANLYSVDFKNKASEVAKEVNLWAAKETNGLIKELLPPRSVNSLTRLIIANALYFKGMWNDKFDASKTKDYDFHLLNGNSVNVPFMTRKEEQYIRAFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESESLKHKLPHDRVEVGDFRIPRFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATAAEVITSSAMSFPTRLDFVADHPFLFMIREELTGTIIFVGQVLNPLAG