Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78732.t1 | KEH17733.1 | 94.9 | 1054 | 31 | 2 | 1 | 1034 | 1 | 1051 | 0.00E+00 | 1850.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78732.t1 | Q8GVE8 | 72.2 | 1054 | 251 | 4 | 1 | 1034 | 1 | 1032 | 0.0e+00 | 1474.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78732.t1 | A0A072TLJ0 | 94.9 | 1054 | 31 | 2 | 1 | 1034 | 1 | 1051 | 0.0e+00 | 1850.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031613 | MS.gene78732 | PPI |
| MS.gene026844 | MS.gene78732 | PPI |
| MS.gene007929 | MS.gene78732 | PPI |
| MS.gene36018 | MS.gene78732 | PPI |
| MS.gene78732 | MS.gene043538 | PPI |
| MS.gene73810 | MS.gene78732 | PPI |
| MS.gene78732 | MS.gene028781 | PPI |
| MS.gene31351 | MS.gene78732 | PPI |
| MS.gene006687 | MS.gene78732 | PPI |
| MS.gene63756 | MS.gene78732 | PPI |
| MS.gene78732 | MS.gene34261 | PPI |
| MS.gene78732 | MS.gene032250 | PPI |
| MS.gene045495 | MS.gene78732 | PPI |
| MS.gene78732 | MS.gene54826 | PPI |
| MS.gene060602 | MS.gene78732 | PPI |
| MS.gene78732 | MS.gene060183 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78732.t1 | MTR_0002s0890 | 96.015 | 1054 | 19 | 3 | 1 | 1034 | 1 | 1051 | 0.0 | 2074 |
| MS.gene78732.t1 | MTR_1g094010 | 71.810 | 674 | 134 | 9 | 1 | 649 | 1 | 643 | 0.0 | 907 |
| MS.gene78732.t1 | MTR_1g094000 | 86.550 | 342 | 46 | 0 | 693 | 1034 | 1 | 342 | 0.0 | 606 |
| MS.gene78732.t1 | MTR_8g463920 | 47.049 | 627 | 279 | 7 | 442 | 1034 | 360 | 967 | 2.62e-179 | 548 |
| MS.gene78732.t1 | MTR_8g463920 | 45.989 | 187 | 100 | 1 | 117 | 302 | 155 | 341 | 4.98e-43 | 170 |
| MS.gene78732.t1 | MTR_4g079860 | 46.411 | 627 | 283 | 7 | 442 | 1034 | 359 | 966 | 6.09e-179 | 547 |
| MS.gene78732.t1 | MTR_4g079860 | 34.218 | 339 | 185 | 8 | 20 | 325 | 34 | 367 | 4.39e-44 | 174 |
| MS.gene78732.t1 | MTR_2g076670 | 46.486 | 626 | 282 | 7 | 443 | 1034 | 360 | 966 | 3.46e-176 | 540 |
| MS.gene78732.t1 | MTR_2g076670 | 45.263 | 190 | 103 | 1 | 114 | 302 | 151 | 340 | 1.54e-43 | 172 |
| MS.gene78732.t1 | MTR_2g092930 | 45.933 | 627 | 286 | 7 | 442 | 1034 | 359 | 966 | 1.40e-174 | 536 |
| MS.gene78732.t1 | MTR_2g092930 | 37.457 | 291 | 146 | 6 | 71 | 325 | 77 | 367 | 1.28e-45 | 178 |
| MS.gene78732.t1 | MTR_8g463920 | 51.233 | 527 | 235 | 6 | 442 | 965 | 360 | 867 | 1.62e-168 | 517 |
| MS.gene78732.t1 | MTR_8g463920 | 45.989 | 187 | 100 | 1 | 117 | 302 | 155 | 341 | 3.70e-43 | 170 |
| MS.gene78732.t1 | MTR_1g009850 | 34.623 | 491 | 198 | 10 | 546 | 1034 | 1 | 370 | 1.71e-68 | 234 |
| MS.gene78732.t1 | MTR_7g060030 | 51.471 | 204 | 25 | 3 | 57 | 260 | 1 | 130 | 3.66e-51 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78732.t1 | AT1G68750 | 73.435 | 1054 | 238 | 5 | 1 | 1034 | 1 | 1032 | 0.0 | 1543 |
| MS.gene78732.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 442 | 1034 | 357 | 963 | 4.16e-178 | 545 |
| MS.gene78732.t1 | AT2G42600 | 36.093 | 302 | 166 | 6 | 20 | 295 | 34 | 334 | 2.49e-43 | 171 |
| MS.gene78732.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 442 | 1034 | 357 | 963 | 4.16e-178 | 545 |
| MS.gene78732.t1 | AT2G42600 | 36.093 | 302 | 166 | 6 | 20 | 295 | 34 | 334 | 2.49e-43 | 171 |
| MS.gene78732.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 442 | 1034 | 357 | 963 | 4.16e-178 | 545 |
| MS.gene78732.t1 | AT2G42600 | 36.093 | 302 | 166 | 6 | 20 | 295 | 34 | 334 | 2.49e-43 | 171 |
| MS.gene78732.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 443 | 1034 | 361 | 967 | 3.75e-175 | 537 |
| MS.gene78732.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 93 | 314 | 131 | 349 | 3.84e-44 | 174 |
| MS.gene78732.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 443 | 1034 | 361 | 967 | 3.75e-175 | 537 |
| MS.gene78732.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 93 | 314 | 131 | 349 | 3.84e-44 | 174 |
| MS.gene78732.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 443 | 1034 | 361 | 967 | 3.75e-175 | 537 |
| MS.gene78732.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 93 | 314 | 131 | 349 | 3.84e-44 | 174 |
| MS.gene78732.t1 | AT3G14940 | 46.571 | 627 | 281 | 8 | 443 | 1034 | 361 | 968 | 1.30e-174 | 536 |
| MS.gene78732.t1 | AT3G14940 | 36.025 | 322 | 173 | 7 | 20 | 314 | 34 | 349 | 3.15e-46 | 181 |
| MS.gene78732.t1 | AT3G14940 | 46.571 | 627 | 281 | 8 | 443 | 1034 | 361 | 968 | 1.30e-174 | 536 |
| MS.gene78732.t1 | AT3G14940 | 36.025 | 322 | 173 | 7 | 20 | 314 | 34 | 349 | 3.15e-46 | 181 |
Find 262 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACTGGATCTTCCTATT+TGG | 0.142042 | 5.4:+42243462 | None:intergenic |
| TGATGCAATTACCAAGTATT+TGG | 0.149299 | 5.4:-42242720 | MS.gene78732:CDS |
| CATCCAAGAGCCAAACTTTA+TGG | 0.170496 | 5.4:+42245727 | None:intergenic |
| CCTCTTCCCTTTAAGCTCTT+TGG | 0.192525 | 5.4:+42242646 | None:intergenic |
| TTGAAGTAGGTGAGGAATTC+TGG | 0.196281 | 5.4:+42239580 | None:intergenic |
| ATGGTTGGGTATTCTGATTC+TGG | 0.227883 | 5.4:-42240966 | MS.gene78732:CDS |
| AATTACCAAGTATTTGGATA+TGG | 0.228014 | 5.4:-42242714 | MS.gene78732:CDS |
| ATCCGTAGAGTTTCTACTTT+TGG | 0.230840 | 5.4:-42242871 | MS.gene78732:CDS |
| CTTACAGTTTGTGGAGAATT+AGG | 0.236647 | 5.4:-42241848 | MS.gene78732:CDS |
| CCCGGCAGCAATACCATTAA+TGG | 0.242857 | 5.4:+42239009 | None:intergenic |
| GCTACCTTTGCTGTCACATT+TGG | 0.242934 | 5.4:+42245683 | None:intergenic |
| CCAGGAAGATGAGGGAGTTT+TGG | 0.253716 | 5.4:+42243425 | None:intergenic |
| TTCTTAACCAAAGAGCTTAA+AGG | 0.257498 | 5.4:-42242653 | MS.gene78732:CDS |
| AGACCTGATTGAGATGGTTT+TGG | 0.259081 | 5.4:-42239314 | MS.gene78732:CDS |
| CGAAACAACTGATCAGCTTT+TGG | 0.262418 | 5.4:-42243054 | MS.gene78732:CDS |
| TTAATGCATGCAGCATCTTT+TGG | 0.273713 | 5.4:-42246253 | MS.gene78732:intron |
| CTCCAAAAGCTTCTGAAAAC+TGG | 0.293397 | 5.4:+42243448 | None:intergenic |
| ATCACCATTTCTCGATCTTC+AGG | 0.297580 | 5.4:+42246204 | None:intergenic |
| AAAACTGGATCTTCCTATTT+GGG | 0.300543 | 5.4:+42243463 | None:intergenic |
| GTCCTCCTTATCACCATTAA+TGG | 0.305564 | 5.4:-42239022 | MS.gene78732:CDS |
| CCAAAACTCCCTCATCTTCC+TGG | 0.311533 | 5.4:-42243425 | MS.gene78732:CDS |
| TGAGGAGATGGCAGAGTTGT+TGG | 0.313298 | 5.4:-42246772 | MS.gene78732:CDS |
| AGTAAAGAAGCCGTCTGATT+TGG | 0.315756 | 5.4:+42243933 | None:intergenic |
| GAGATGGTGCAGGCCAAGTT+TGG | 0.316061 | 5.4:-42239766 | MS.gene78732:CDS |
| CTACCTTTGCTGTCACATTT+GGG | 0.325463 | 5.4:+42245684 | None:intergenic |
| TTGCAAAGAGTACGGTATTA+AGG | 0.329108 | 5.4:-42240877 | MS.gene78732:CDS |
| TCTCCTCTGTTATGAATCTA+TGG | 0.333593 | 5.4:-42243024 | MS.gene78732:intron |
| TTGAGCTCGCTGAACTTGTT+GGG | 0.334363 | 5.4:+42243552 | None:intergenic |
| TTTCGAGTTTCTGCAGAGAT+AGG | 0.334368 | 5.4:-42242340 | MS.gene78732:CDS |
| ACTTGCACTCCCATAAAGTT+TGG | 0.348788 | 5.4:-42245737 | MS.gene78732:CDS |
| TAACCTCTTGGTGTCCGTTA+TGG | 0.349444 | 5.4:+42241069 | None:intergenic |
| TTTGTCAGAGCACCCCTTCA+TGG | 0.350130 | 5.4:+42244978 | None:intergenic |
| TGGCGGTGGCCCAACTTATC+TGG | 0.352335 | 5.4:-42240817 | MS.gene78732:CDS |
| TGGCAACCGACCTCTATATT+CGG | 0.359485 | 5.4:-42245029 | MS.gene78732:CDS |
| TCCTCTCTTTGAAACTGTTA+AGG | 0.360533 | 5.4:-42241165 | MS.gene78732:CDS |
| TTCGTTCTTCCTGCTTGGCT+TGG | 0.362195 | 5.4:-42239430 | MS.gene78732:CDS |
| TCTTAACCAAAGAGCTTAAA+GGG | 0.365000 | 5.4:-42242652 | MS.gene78732:CDS |
| TTGTTTGCAGAATCCCAAAT+AGG | 0.365790 | 5.4:-42243476 | MS.gene78732:CDS |
| ATGAGCTCTAGCTGGGAGTT+TGG | 0.366459 | 5.4:+42243905 | None:intergenic |
| GTTTGCAAACTGTATTATAA+AGG | 0.369503 | 5.4:+42246553 | None:intergenic |
| CTTCCTGCTTGGCTTGGAGT+TGG | 0.379581 | 5.4:-42239424 | MS.gene78732:CDS |
| CTGGGCGCTTTACTGCTGCC+TGG | 0.379709 | 5.4:-42240935 | MS.gene78732:CDS |
| AGCTTCTTCTAAGTTCATCT+TGG | 0.381249 | 5.4:+42246725 | None:intergenic |
| GCTTGGCTTGGAGTTGGAGC+AGG | 0.381867 | 5.4:-42239418 | MS.gene78732:CDS |
| ACTTCAACTGTGAGCAATGC+TGG | 0.395934 | 5.4:-42243596 | MS.gene78732:CDS |
| CTCTAGCAATCTTGTGGAGC+TGG | 0.398924 | 5.4:-42242931 | MS.gene78732:intron |
| ATCAAGTGTTTCAGCATGTC+TGG | 0.402474 | 5.4:+42242739 | None:intergenic |
| TTGAAAGGTGCTTGCGAGAA+AGG | 0.407969 | 5.4:-42239394 | MS.gene78732:CDS |
| CTCCCATAAAGTTTGGCTCT+TGG | 0.409831 | 5.4:-42245730 | MS.gene78732:CDS |
| TTCCCGAGGACAATTCTATA+AGG | 0.410709 | 5.4:+42243395 | None:intergenic |
| CCAGATTCGTTCTTCCTGCT+TGG | 0.411430 | 5.4:-42239435 | MS.gene78732:CDS |
| CCAAGCAGGAAGAACGAATC+TGG | 0.414731 | 5.4:+42239435 | None:intergenic |
| ATTACCAAGTATTTGGATAT+GGG | 0.416538 | 5.4:-42242713 | MS.gene78732:CDS |
| TTGGCACATGAAATTCTAGA+AGG | 0.416667 | 5.4:-42244946 | MS.gene78732:intron |
| GGGAGTATTGGTCGTGGCGG+TGG | 0.416710 | 5.4:-42240831 | MS.gene78732:CDS |
| TATGAGACAGGGAGGAATTG+AGG | 0.416965 | 5.4:-42246790 | MS.gene78732:CDS |
| TTCCCAAAACCATCTCAATC+AGG | 0.417745 | 5.4:+42239311 | None:intergenic |
| ATTGAGCTCGCTGAACTTGT+TGG | 0.419020 | 5.4:+42243551 | None:intergenic |
| ATCCAAGAGCCAAACTTTAT+GGG | 0.419228 | 5.4:+42245728 | None:intergenic |
| TGTTGGGGATGCATGACTAT+TGG | 0.424180 | 5.4:+42243568 | None:intergenic |
| AGATGGTGCAGGCCAAGTTT+GGG | 0.425318 | 5.4:-42239765 | MS.gene78732:CDS |
| TCTAGGACTTCTTTAACATC+TGG | 0.428875 | 5.4:+42242367 | None:intergenic |
| TGTTGATTAGAGTTGGAAGA+AGG | 0.430928 | 5.4:+42243518 | None:intergenic |
| AACCCTTCGGTCTACTGAGC+AGG | 0.432317 | 5.4:-42239791 | MS.gene78732:CDS |
| TATAATGACCGACCTGATCT+TGG | 0.436771 | 5.4:-42246228 | MS.gene78732:CDS |
| CAGAAACTCGAAACGTATCT+AGG | 0.437217 | 5.4:+42242350 | None:intergenic |
| TGGAGCCTATGTGATCTCTA+TGG | 0.438799 | 5.4:-42242305 | MS.gene78732:CDS |
| CATAAAGTTTGGCTCTTGGA+TGG | 0.439041 | 5.4:-42245726 | MS.gene78732:CDS |
| GAAGGTAAATGAGCTCTAGC+TGG | 0.439845 | 5.4:+42243897 | None:intergenic |
| GTTGTGGCCTTTCTTCTCGT+GGG | 0.441637 | 5.4:+42239508 | None:intergenic |
| CTCTGACAAATTGTCTAGAT+TGG | 0.442124 | 5.4:-42244965 | MS.gene78732:CDS |
| AAGAAGTTGTTGATTAGAGT+TGG | 0.442500 | 5.4:+42243511 | None:intergenic |
| ACCATTAATGGTATTGCTGC+CGG | 0.442827 | 5.4:-42239010 | MS.gene78732:CDS |
| GACACCTTCGTGCCATTCCC+TGG | 0.444073 | 5.4:-42239477 | MS.gene78732:CDS |
| TGAGAGAGATAACTTCAATA+TGG | 0.445525 | 5.4:-42246094 | MS.gene78732:CDS |
| ACAAACTTCTGCAGAACAAC+AGG | 0.445868 | 5.4:-42239159 | MS.gene78732:CDS |
| CTCCACTTGCAACATGTTCA+AGG | 0.446819 | 5.4:+42239093 | None:intergenic |
| AGAAAGGCCACAACAGGAAT+CGG | 0.447845 | 5.4:-42239499 | MS.gene78732:CDS |
| TTTGACGGACTTCTATTCTC+TGG | 0.450218 | 5.4:+42243960 | None:intergenic |
| GACTGAATAGCCAGATAAGT+TGG | 0.452157 | 5.4:+42240807 | None:intergenic |
| GCTCATTTACCTTCTTGTGC+TGG | 0.452746 | 5.4:-42243888 | MS.gene78732:intron |
| TCTGATTCTGGTAAAGATGC+TGG | 0.453942 | 5.4:-42240954 | MS.gene78732:CDS |
| ACGAGAAGAAAGGCCACAAC+AGG | 0.454693 | 5.4:-42239505 | MS.gene78732:CDS |
| ATTCTATAAGGAGCAATTCC+AGG | 0.458187 | 5.4:+42243407 | None:intergenic |
| TACAGTCATCGTCGAAGCCT+TGG | 0.459975 | 5.4:+42247014 | None:intergenic |
| GACGATGACTGTAAGTTGCT+TGG | 0.460688 | 5.4:-42247004 | MS.gene78732:CDS |
| TTGAGTCCATGCGAATATCC+AGG | 0.461942 | 5.4:+42239459 | None:intergenic |
| GAAAACTTCTATCAATAGAT+TGG | 0.465852 | 5.4:-42241115 | MS.gene78732:CDS |
| AATCCTCACGTTTAGTCTCA+TGG | 0.468993 | 5.4:+42243991 | None:intergenic |
| TGGGCGCTTTACTGCTGCCT+GGG | 0.469321 | 5.4:-42240934 | MS.gene78732:CDS |
| TGTTTGTGGCAACCCAAACT+TGG | 0.470943 | 5.4:+42239753 | None:intergenic |
| AAGTTTGTCACCGTTATTTG+TGG | 0.473387 | 5.4:-42239187 | MS.gene78732:CDS |
| ATACACAACAGCTGTGCTAC+TGG | 0.473563 | 5.4:-42239710 | MS.gene78732:CDS |
| GGCAACCGACCTCTATATTC+GGG | 0.474992 | 5.4:-42245028 | MS.gene78732:CDS |
| TTATAATACAGTTTGCAAAC+AGG | 0.476153 | 5.4:-42246550 | MS.gene78732:intron |
| AATGAAGCTTGACTTGCGTC+AGG | 0.477603 | 5.4:-42242839 | MS.gene78732:intron |
| ATTAAGGTTACTTTATTCCA+TGG | 0.479859 | 5.4:-42240861 | MS.gene78732:CDS |
| GCCTATATGCAGGTTATGGT+TGG | 0.479983 | 5.4:-42240981 | MS.gene78732:intron |
| GATGCACGTCTTACAGTTTG+TGG | 0.480244 | 5.4:-42241857 | MS.gene78732:CDS |
| AGTCAGCAATGCTTTAAAGA+AGG | 0.480964 | 5.4:-42245872 | MS.gene78732:intron |
| TGTTGTGGCCTTTCTTCTCG+TGG | 0.483275 | 5.4:+42239507 | None:intergenic |
| ATAGTTGGTGAGAAGTTATC+CGG | 0.483396 | 5.4:+42238976 | None:intergenic |
| CCTATATGCAGGTTATGGTT+GGG | 0.483659 | 5.4:-42240980 | MS.gene78732:intron |
| GCTATTCAGTCCCAGCCACC+TGG | 0.483772 | 5.4:-42240795 | MS.gene78732:CDS |
| CTTTATATGTTTGTATTGCA+AGG | 0.484746 | 5.4:+42246390 | None:intergenic |
| GCCACACCTCAAGCAGAGCT+TGG | 0.486352 | 5.4:-42239553 | MS.gene78732:CDS |
| CAATACCATTAATGGTGATA+AGG | 0.487204 | 5.4:+42239017 | None:intergenic |
| CATCACAGAGCCAGGTGGCT+GGG | 0.489075 | 5.4:+42240785 | None:intergenic |
| TCCTATCTCACCTCTATACT+AGG | 0.489136 | 5.4:+42242611 | None:intergenic |
| CGATCTTCAGGACCAAGATC+AGG | 0.489148 | 5.4:+42246216 | None:intergenic |
| AAGAACTTGGTCGTCAACTA+AGG | 0.489824 | 5.4:-42239231 | MS.gene78732:CDS |
| TGGGGCGGCTACCTATGTTC+AGG | 0.490293 | 5.4:+42239527 | None:intergenic |
| CAATCTTGTGGAGCTGGAGC+TGG | 0.490881 | 5.4:-42242925 | MS.gene78732:CDS |
| GCACCAGGGATGTCGAGTCT+TGG | 0.491641 | 5.4:+42243752 | None:intergenic |
| AGAAATGGTGATAGAAGATC+TGG | 0.494628 | 5.4:-42246193 | MS.gene78732:intron |
| GAGTGCTTGTAATATGAGAC+AGG | 0.494896 | 5.4:-42246802 | MS.gene78732:CDS |
| AATTTCCTCTAGCAATCTTG+TGG | 0.496853 | 5.4:-42242937 | MS.gene78732:intron |
| CCATCACAGAGCCAGGTGGC+TGG | 0.497089 | 5.4:+42240784 | None:intergenic |
| CCATTAATGGTATTGCTGCC+GGG | 0.497379 | 5.4:-42239009 | MS.gene78732:CDS |
| TTCGAGTTTCTGCAGAGATA+GGG | 0.499286 | 5.4:-42242339 | MS.gene78732:CDS |
| ACAGGGAGGAATTGAGGAGA+TGG | 0.500077 | 5.4:-42246784 | MS.gene78732:CDS |
| AGTTTGTCACCGTTATTTGT+GGG | 0.500439 | 5.4:-42239186 | MS.gene78732:CDS |
| AAATTCCATCTTGCAAAAGC+TGG | 0.501455 | 5.4:+42246586 | None:intergenic |
| TATCATTGCAGGGAACCCTT+CGG | 0.501658 | 5.4:-42239804 | MS.gene78732:intron |
| CCAGCCACCTGGCTCTGTGA+TGG | 0.502613 | 5.4:-42240784 | MS.gene78732:intron |
| CTCCTTATAGAATTGTCCTC+GGG | 0.504346 | 5.4:-42243397 | MS.gene78732:CDS |
| GTTAAGGACCTCAGAGGAGC+TGG | 0.506307 | 5.4:-42241149 | MS.gene78732:CDS |
| TTTATGGGAGTGCAAGTCAA+TGG | 0.506481 | 5.4:+42245743 | None:intergenic |
| CATGGCCGTGGAGGGAGTAT+TGG | 0.506592 | 5.4:-42240843 | MS.gene78732:CDS |
| CCTCGGGAATGTAAAAGATA+AGG | 0.509108 | 5.4:-42243381 | MS.gene78732:intron |
| TGGTCCTGAAGATCGAGAAA+TGG | 0.509757 | 5.4:-42246208 | MS.gene78732:CDS |
| ATGGTATTGCTGCCGGGATG+AGG | 0.512914 | 5.4:-42239003 | MS.gene78732:CDS |
| TTGAGCTTTGTAAAGTTCCC+AGG | 0.514250 | 5.4:+42240917 | None:intergenic |
| TTTGTCGTGCCCACAAATAA+CGG | 0.514471 | 5.4:+42239177 | None:intergenic |
| ATGAGACTAAACGTGAGGAT+TGG | 0.515240 | 5.4:-42243989 | MS.gene78732:CDS |
| ATAAAGTTTGGCTCTTGGAT+GGG | 0.515444 | 5.4:-42245725 | MS.gene78732:CDS |
| GAGATTTGAGTTATCCATGA+AGG | 0.515713 | 5.4:-42244992 | MS.gene78732:CDS |
| GGAGTTGGAGCAGGTTTGAA+AGG | 0.516727 | 5.4:-42239409 | MS.gene78732:CDS |
| CGACCTCTATATTCGGGAAG+TGG | 0.517085 | 5.4:-42245022 | MS.gene78732:CDS |
| GAAAGTCCACTCTTTGTACA+TGG | 0.518151 | 5.4:+42239351 | None:intergenic |
| TGCAAGTGGAGATACTTAAG+AGG | 0.518732 | 5.4:-42239081 | MS.gene78732:CDS |
| GCTCCAACTCCAAGCCAAGC+AGG | 0.520197 | 5.4:+42239421 | None:intergenic |
| TAGCAGTTGATGTACATTTG+AGG | 0.521119 | 5.4:+42242282 | None:intergenic |
| TATCCACTTCCCGAATATAG+AGG | 0.522113 | 5.4:+42245019 | None:intergenic |
| AGTTGTCTAACAGATGTTTG+TGG | 0.522699 | 5.4:+42239739 | None:intergenic |
| ACTAGTTCCTCCTAGTATAG+AGG | 0.523919 | 5.4:-42242621 | MS.gene78732:intron |
| CAATACTCCCTCCACGGCCA+TGG | 0.524087 | 5.4:+42240844 | None:intergenic |
| ATATGGGTACATACAGTGAA+TGG | 0.527194 | 5.4:-42242697 | MS.gene78732:CDS |
| GAGTTGGAAGAAGGAGAGCG+TGG | 0.527361 | 5.4:+42243527 | None:intergenic |
| CTAGCTTCATCCACTGGAGT+AGG | 0.528935 | 5.4:+42246044 | None:intergenic |
| GCTCTAGCTGGGAGTTTGGA+TGG | 0.529054 | 5.4:+42243909 | None:intergenic |
| GCTCCTTATAGAATTGTCCT+CGG | 0.530711 | 5.4:-42243398 | MS.gene78732:CDS |
| GTTACTTTATTCCATGGCCG+TGG | 0.532100 | 5.4:-42240855 | MS.gene78732:CDS |
| AGATTTGAGTTATCCATGAA+GGG | 0.534361 | 5.4:-42244991 | MS.gene78732:CDS |
| CCAAAGAGCTTAAAGGGAAG+AGG | 0.535345 | 5.4:-42242646 | MS.gene78732:CDS |
| TCCAAGCTCTGCTTGAGGTG+TGG | 0.536208 | 5.4:+42239552 | None:intergenic |
| AGAGTTGTTGGAGAAGCAGT+TGG | 0.536252 | 5.4:-42246760 | MS.gene78732:CDS |
| CTTTATTCCATGGCCGTGGA+GGG | 0.536693 | 5.4:-42240851 | MS.gene78732:CDS |
| TGTACCCATATCCAAATACT+TGG | 0.536867 | 5.4:+42242709 | None:intergenic |
| ACTGAATAGCCAGATAAGTT+GGG | 0.540141 | 5.4:+42240808 | None:intergenic |
| AGAATTAGGAAGAGAATGTC+CGG | 0.540328 | 5.4:-42241834 | MS.gene78732:CDS |
| TAGCCGCCCCACGAGAAGAA+AGG | 0.541590 | 5.4:-42239515 | MS.gene78732:CDS |
| ACTTTATTCCATGGCCGTGG+AGG | 0.542132 | 5.4:-42240852 | MS.gene78732:CDS |
| GTCTACTGAGCAGGGAGAGA+TGG | 0.542351 | 5.4:-42239782 | MS.gene78732:CDS |
| ATCAACAACTTCTTGCTCAA+AGG | 0.542695 | 5.4:-42243502 | MS.gene78732:CDS |
| TCCACTTGCAACATGTTCAA+GGG | 0.543143 | 5.4:+42239094 | None:intergenic |
| TGGCCTTTCTTCTCGTGGGG+CGG | 0.546370 | 5.4:+42239512 | None:intergenic |
| TCCCTTGAACATGTTGCAAG+TGG | 0.546576 | 5.4:-42239095 | MS.gene78732:CDS |
| CTGATTCTGGTAAAGATGCT+GGG | 0.546993 | 5.4:-42240953 | MS.gene78732:CDS |
| ACAGAGAACTCGTAGACGAT+TGG | 0.547439 | 5.4:-42243126 | MS.gene78732:CDS |
| CTCCCTGCTCAGTAGACCGA+AGG | 0.549087 | 5.4:+42239788 | None:intergenic |
| CATCCAAGACTCGACATCCC+TGG | 0.552104 | 5.4:-42243755 | MS.gene78732:CDS |
| CCAGCTCTAGCTTCATCCAC+TGG | 0.553320 | 5.4:+42246038 | None:intergenic |
| TAACTCACCATCACAGAGCC+AGG | 0.554920 | 5.4:+42240777 | None:intergenic |
| CATAATAGACCTGATTGAGA+TGG | 0.555044 | 5.4:-42239320 | MS.gene78732:CDS |
| GATTCATAACAGAGGAGAAG+AGG | 0.556501 | 5.4:+42243029 | None:intergenic |
| ATGTTCAAGGGATTGAGAAA+CGG | 0.557412 | 5.4:+42239106 | None:intergenic |
| GCCTTGGAAGGACATTTCCT+CGG | 0.558046 | 5.4:+42247030 | None:intergenic |
| TGAGCTCGCTGAACTTGTTG+GGG | 0.558745 | 5.4:+42243553 | None:intergenic |
| ACTTGATTGTAATCAGCACC+AGG | 0.561220 | 5.4:+42243737 | None:intergenic |
| GTTGTTTCGTAGTAATCAGA+AGG | 0.561765 | 5.4:+42243068 | None:intergenic |
| TCTTCTCGGGGTGGTAGAGG+TGG | 0.562465 | 5.4:+42239676 | None:intergenic |
| TTGTGGCCTTTCTTCTCGTG+GGG | 0.562751 | 5.4:+42239509 | None:intergenic |
| TTACAAAGCTCAAGAGGATG+TGG | 0.563771 | 5.4:-42240907 | MS.gene78732:CDS |
| ACATTGTGGAGCAGTCACTC+TGG | 0.564696 | 5.4:-42245921 | MS.gene78732:CDS |
| CCATTCCCTGGATATTCGCA+TGG | 0.564946 | 5.4:-42239465 | MS.gene78732:CDS |
| GGAGCAATTCCAGGAAGATG+AGG | 0.566139 | 5.4:+42243416 | None:intergenic |
| TTACAATCAAGTCAATATCA+AGG | 0.566345 | 5.4:-42243726 | MS.gene78732:intron |
| GGAGTGCAAGTCAATGGAAG+TGG | 0.566520 | 5.4:+42245749 | None:intergenic |
| AGACTGTACTGCGGTAACAC+TGG | 0.569328 | 5.4:+42239611 | None:intergenic |
| GCCGAGGAAATGTCCTTCCA+AGG | 0.571295 | 5.4:-42247031 | MS.gene78732:CDS |
| CTGACTCGACGTAAATAATG+AGG | 0.573363 | 5.4:+42245889 | None:intergenic |
| GAGCAATTCCAGGAAGATGA+GGG | 0.576413 | 5.4:+42243417 | None:intergenic |
| TGCCAAAAGTAGAAACTCTA+CGG | 0.576774 | 5.4:+42242869 | None:intergenic |
| GTACGTCGATTAATTTGTGT+GGG | 0.579325 | 5.4:+42246412 | None:intergenic |
| AAGGTAAATGAGCTCTAGCT+GGG | 0.581517 | 5.4:+42243898 | None:intergenic |
| GGGTGGTAGAGGTGGACGAA+GGG | 0.584153 | 5.4:+42239684 | None:intergenic |
| TCCTTAACAGTTTCAAAGAG+AGG | 0.584204 | 5.4:+42241164 | None:intergenic |
| AAGTTTGGCTCTTGGATGGG+AGG | 0.585622 | 5.4:-42245722 | MS.gene78732:CDS |
| TCAGAAGGATCAAGTTCGCA+TGG | 0.585880 | 5.4:+42243083 | None:intergenic |
| AAGGTGTCCGATTCCTGTTG+TGG | 0.590609 | 5.4:+42239492 | None:intergenic |
| TGCAGTAGAGCTCTTACAGA+AGG | 0.591503 | 5.4:-42241879 | MS.gene78732:CDS |
| TCAGAGAAGAGACAAGAACT+TGG | 0.593854 | 5.4:-42239244 | MS.gene78732:CDS |
| TTAGGAAGAGAATGTCCGGC+TGG | 0.594796 | 5.4:-42241830 | MS.gene78732:CDS |
| GGTACGTCGATTAATTTGTG+TGG | 0.595875 | 5.4:+42246411 | None:intergenic |
| CCATGCGAATATCCAGGGAA+TGG | 0.598516 | 5.4:+42239465 | None:intergenic |
| CCAGTGGATGAAGCTAGAGC+TGG | 0.602228 | 5.4:-42246038 | MS.gene78732:intron |
| GGAACTTTACAAAGCTCAAG+AGG | 0.602528 | 5.4:-42240913 | MS.gene78732:CDS |
| ACGATTGGAACTGCTTCTAG+AGG | 0.605318 | 5.4:-42243111 | MS.gene78732:CDS |
| CTAATGAACTAACCTGTGCA+AGG | 0.608944 | 5.4:+42246909 | None:intergenic |
| TGAGCAGGGAGAGATGGTGC+AGG | 0.610093 | 5.4:-42239776 | MS.gene78732:CDS |
| TACCATTAATGGTGATAAGG+AGG | 0.611172 | 5.4:+42239020 | None:intergenic |
| GGAGCTGGTGTGTTAGCTGA+TGG | 0.612816 | 5.4:-42242910 | MS.gene78732:CDS |
| AGGTGTGGCCTCATTGAAGT+AGG | 0.612841 | 5.4:+42239567 | None:intergenic |
| ACCCTTCGGTCTACTGAGCA+GGG | 0.612866 | 5.4:-42239790 | MS.gene78732:CDS |
| GGGGTGGTAGAGGTGGACGA+AGG | 0.613568 | 5.4:+42239683 | None:intergenic |
| AGATGGACTTACGTTCCAGC+CGG | 0.616720 | 5.4:+42241815 | None:intergenic |
| TCATGTGTACCAGCACAAGA+AGG | 0.618233 | 5.4:+42243879 | None:intergenic |
| TAAAAGCCATGTACAAAGAG+TGG | 0.619720 | 5.4:-42239357 | MS.gene78732:CDS |
| CAAAGCTCAAGAGGATGTGG+TGG | 0.622506 | 5.4:-42240904 | MS.gene78732:CDS |
| TGAGTCCATGCGAATATCCA+GGG | 0.623669 | 5.4:+42239460 | None:intergenic |
| TTATCCGGTGTTCCTCATCC+CGG | 0.624760 | 5.4:+42238991 | None:intergenic |
| CACTTCCCGAATATAGAGGT+CGG | 0.625274 | 5.4:+42245023 | None:intergenic |
| GAGATAGGGAGTGATTCACT+TGG | 0.625975 | 5.4:-42242325 | MS.gene78732:CDS |
| GAGCTTGGATTCCTGAACAT+AGG | 0.626377 | 5.4:-42239538 | MS.gene78732:CDS |
| GTCATCGTCGAAGCCTTGGA+AGG | 0.626844 | 5.4:+42247018 | None:intergenic |
| TCCCTGCTCAGTAGACCGAA+GGG | 0.626928 | 5.4:+42239789 | None:intergenic |
| CACGACCAATACTCCCTCCA+CGG | 0.631814 | 5.4:+42240838 | None:intergenic |
| TGCAGAACAACAGGACATTG+AGG | 0.632534 | 5.4:-42239150 | MS.gene78732:CDS |
| AAACCATAACGGACACCAAG+AGG | 0.633603 | 5.4:-42241072 | MS.gene78732:intron |
| CGTGGAGGGAGTATTGGTCG+TGG | 0.634574 | 5.4:-42240837 | MS.gene78732:CDS |
| GTGGCTGCTTGCAAAGAGTA+CGG | 0.634728 | 5.4:-42240885 | MS.gene78732:CDS |
| TATCCCAGGATTGAACATTG+TGG | 0.635711 | 5.4:-42245935 | MS.gene78732:intron |
| TGGCCTCATTGAAGTAGGTG+AGG | 0.636182 | 5.4:+42239572 | None:intergenic |
| TATCTCTCCATGCAGCACAC+GGG | 0.645122 | 5.4:-42245776 | MS.gene78732:intron |
| TTCCTCGGCAATGTCATCAG+TGG | 0.645816 | 5.4:+42247045 | None:intergenic |
| TGGATGGGAGGTGATAGAGA+TGG | 0.646610 | 5.4:-42245710 | MS.gene78732:CDS |
| ACGTCAGAAACCTACTCCAG+TGG | 0.647148 | 5.4:-42246054 | MS.gene78732:CDS |
| AGGAATCCAAGCTCTGCTTG+AGG | 0.651486 | 5.4:+42239547 | None:intergenic |
| TCTGTAAGAGCTCTACTGCA+AGG | 0.655051 | 5.4:+42241882 | None:intergenic |
| GATTTGAGTTATCCATGAAG+GGG | 0.657395 | 5.4:-42244990 | MS.gene78732:CDS |
| AAACCCAAATGTGACAGCAA+AGG | 0.665409 | 5.4:-42245687 | MS.gene78732:intron |
| CACCACTGATGACATTGCCG+AGG | 0.666464 | 5.4:-42247047 | MS.gene78732:CDS |
| TATCTCACCTCTATACTAGG+AGG | 0.670109 | 5.4:+42242614 | None:intergenic |
| TCTATACTAGGAGGAACTAG+TGG | 0.671109 | 5.4:+42242623 | None:intergenic |
| GTACCATAGATTCATAACAG+AGG | 0.673498 | 5.4:+42243021 | None:intergenic |
| TAACGGAACCAGCTCCTCTG+AGG | 0.673662 | 5.4:+42241141 | None:intergenic |
| GCTGCCGGGATGAGGAACAC+CGG | 0.675028 | 5.4:-42238995 | MS.gene78732:CDS |
| TGTCCAACATAGGCTTCGAG+TGG | 0.683701 | 5.4:-42241189 | MS.gene78732:intron |
| ATTCCTCACCTACTTCAATG+AGG | 0.689393 | 5.4:-42239575 | MS.gene78732:CDS |
| TGAGGCCATAGAGATCACAT+AGG | 0.689767 | 5.4:+42242300 | None:intergenic |
| TAACCATGAGACTAAACGTG+AGG | 0.693529 | 5.4:-42243994 | MS.gene78732:CDS |
| GAAACTGTTAAGGACCTCAG+AGG | 0.696978 | 5.4:-42241155 | MS.gene78732:CDS |
| GCTTGTAATATGAGACAGGG+AGG | 0.701576 | 5.4:-42246798 | MS.gene78732:CDS |
| CTTGATTGTAATCAGCACCA+GGG | 0.701799 | 5.4:+42243738 | None:intergenic |
| TATTGCAAAGCAGTATGACG+AGG | 0.705157 | 5.4:-42239275 | MS.gene78732:CDS |
| AGTGCTTGTAATATGAGACA+GGG | 0.705612 | 5.4:-42246801 | MS.gene78732:CDS |
| CTTCAGGACCAAGATCAGGT+CGG | 0.713884 | 5.4:+42246220 | None:intergenic |
| AGAACAACAGGACATTGAGG+AGG | 0.722574 | 5.4:-42239147 | MS.gene78732:CDS |
| GGAGGGAGTATTGGTCGTGG+CGG | 0.722900 | 5.4:-42240834 | MS.gene78732:CDS |
| ATATCCAGGGAATGGCACGA+AGG | 0.730973 | 5.4:+42239473 | None:intergenic |
| CTCACCATCACAGAGCCAGG+TGG | 0.760441 | 5.4:+42240780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 42238991 | 42247077 | 42238991 | ID=MS.gene78732 |
| chr5.4 | mRNA | 42238991 | 42247077 | 42238991 | ID=MS.gene78732.t1;Parent=MS.gene78732 |
| chr5.4 | exon | 42246922 | 42247077 | 42246922 | ID=MS.gene78732.t1.exon1;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42246922 | 42247077 | 42246922 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42246703 | 42246823 | 42246703 | ID=MS.gene78732.t1.exon2;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42246703 | 42246823 | 42246703 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42246551 | 42246648 | 42246551 | ID=MS.gene78732.t1.exon3;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42246551 | 42246648 | 42246551 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42246384 | 42246461 | 42246384 | ID=MS.gene78732.t1.exon4;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42246384 | 42246461 | 42246384 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42246194 | 42246262 | 42246194 | ID=MS.gene78732.t1.exon5;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42246194 | 42246262 | 42246194 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42246039 | 42246117 | 42246039 | ID=MS.gene78732.t1.exon6;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42246039 | 42246117 | 42246039 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42245873 | 42245949 | 42245873 | ID=MS.gene78732.t1.exon7;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42245873 | 42245949 | 42245873 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42245688 | 42245783 | 42245688 | ID=MS.gene78732.t1.exon8;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42245688 | 42245783 | 42245688 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42244947 | 42245085 | 42244947 | ID=MS.gene78732.t1.exon9;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42244947 | 42245085 | 42244947 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42243889 | 42244020 | 42243889 | ID=MS.gene78732.t1.exon10;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42243889 | 42244020 | 42243889 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42243727 | 42243794 | 42243727 | ID=MS.gene78732.t1.exon11;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42243727 | 42243794 | 42243727 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42243382 | 42243645 | 42243382 | ID=MS.gene78732.t1.exon12;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42243382 | 42243645 | 42243382 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42243025 | 42243150 | 42243025 | ID=MS.gene78732.t1.exon13;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42243025 | 42243150 | 42243025 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42242840 | 42242947 | 42242840 | ID=MS.gene78732.t1.exon14;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42242840 | 42242947 | 42242840 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42242622 | 42242768 | 42242622 | ID=MS.gene78732.t1.exon15;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42242622 | 42242768 | 42242622 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42242297 | 42242395 | 42242297 | ID=MS.gene78732.t1.exon16;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42242297 | 42242395 | 42242297 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42241827 | 42241915 | 42241827 | ID=MS.gene78732.t1.exon17;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42241827 | 42241915 | 42241827 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42241073 | 42241199 | 42241073 | ID=MS.gene78732.t1.exon18;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42241073 | 42241199 | 42241073 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42240785 | 42240991 | 42240785 | ID=MS.gene78732.t1.exon19;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42240785 | 42240991 | 42240785 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| chr5.4 | exon | 42238991 | 42239815 | 42238991 | ID=MS.gene78732.t1.exon20;Parent=MS.gene78732.t1 |
| chr5.4 | CDS | 42238991 | 42239815 | 42238991 | ID=cds.MS.gene78732.t1;Parent=MS.gene78732.t1 |
| Gene Sequence |
| Protein sequence |
