Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78791.t1 | XP_003614714.1 | 96 | 101 | 4 | 0 | 8 | 108 | 102 | 202 | 2.50E-45 | 192.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78791.t1 | Q9FX64 | 69.0 | 71 | 22 | 0 | 137 | 207 | 149 | 219 | 8.9e-23 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78791.t1 | G7JXB6 | 96.0 | 101 | 4 | 0 | 8 | 108 | 102 | 202 | 1.8e-45 | 192.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053974 | MS.gene78791 | 0.88658 | 3.02E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78791.t1 | MTR_5g058150 | 96.040 | 101 | 4 | 0 | 8 | 108 | 102 | 202 | 4.52e-65 | 202 |
| MS.gene78791.t1 | MTR_5g055150 | 93.478 | 92 | 6 | 0 | 116 | 207 | 128 | 219 | 8.30e-57 | 180 |
| MS.gene78791.t1 | MTR_6g075250 | 69.608 | 102 | 30 | 1 | 8 | 108 | 100 | 201 | 5.04e-44 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78791.t1 | AT1G13330 | 68.182 | 88 | 28 | 0 | 120 | 207 | 132 | 219 | 7.38e-38 | 131 |
| MS.gene78791.t1 | AT1G12650 | 56.000 | 100 | 43 | 1 | 10 | 108 | 102 | 201 | 2.64e-25 | 99.8 |
| MS.gene78791.t1 | AT1G12650 | 56.000 | 100 | 43 | 1 | 10 | 108 | 102 | 201 | 2.64e-25 | 99.8 |
| MS.gene78791.t1 | AT1G12650 | 56.000 | 100 | 43 | 1 | 10 | 108 | 102 | 201 | 2.64e-25 | 99.8 |
| MS.gene78791.t1 | AT1G12650 | 56.000 | 100 | 43 | 1 | 10 | 108 | 102 | 201 | 2.64e-25 | 99.8 |
Find 46 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGATCCCAAAGAATTTA+AGG | 0.146216 | 5.1:+40065414 | MS.gene78791:CDS |
| CTTACATTTCTTGAGATAAA+AGG | 0.188990 | 5.1:-40064169 | None:intergenic |
| AAAAGAAACCTTAAATTCTT+TGG | 0.192821 | 5.1:-40065422 | None:intergenic |
| AAAGAATGTTCAGGGATTTA+TGG | 0.204783 | 5.1:+40065368 | MS.gene78791:CDS |
| GAATATTGAGACACAGATTT+TGG | 0.225799 | 5.1:+40064098 | MS.gene78791:CDS |
| TCAACTGCCGCGCGTTCTTC+TGG | 0.252324 | 5.1:-40065304 | None:intergenic |
| AAAGAAACCTTAAATTCTTT+GGG | 0.320146 | 5.1:-40065421 | None:intergenic |
| TGGCATAACAGGCTCTTAAA+AGG | 0.329338 | 5.1:+40063894 | MS.gene78791:intron |
| AAGAATGTTCAGGGATTTAT+GGG | 0.335669 | 5.1:+40065369 | MS.gene78791:CDS |
| TTAAATTCTTTGGGATCCTT+AGG | 0.363696 | 5.1:-40065412 | None:intergenic |
| TGAACATTGCAGGAGGATCT+TGG | 0.381760 | 5.1:+40065513 | MS.gene78791:intron |
| AATGATTACCTTGTGGTATC+AGG | 0.391887 | 5.1:-40065584 | None:intergenic |
| GGAAGCGTAAAAGAATGTTC+AGG | 0.398097 | 5.1:+40065359 | MS.gene78791:CDS |
| CCACGATTTGAGTCTCTTTG+CGG | 0.402540 | 5.1:+40062620 | MS.gene78791:CDS |
| TCTACTTCAGGTTCAAGAAC+TGG | 0.406886 | 5.1:+40065237 | MS.gene78791:intron |
| TGCGGTACATTTGACAATGA+TGG | 0.407412 | 5.1:+40062638 | MS.gene78791:CDS |
| GAACATTGCAGGAGGATCTT+GGG | 0.433317 | 5.1:+40065514 | MS.gene78791:intron |
| TCTATTTCACTTCTACGCTC+TGG | 0.442608 | 5.1:-40063938 | None:intergenic |
| TTACATTTCTTGAGATAAAA+GGG | 0.446015 | 5.1:-40064168 | None:intergenic |
| GCGGTACATTTGACAATGAT+GGG | 0.485185 | 5.1:+40062639 | MS.gene78791:CDS |
| TGATCTTCCTGCTGAAAGAC+AGG | 0.502469 | 5.1:+40063795 | MS.gene78791:CDS |
| TTACCTACCTGTCTTTCAGC+AGG | 0.507162 | 5.1:-40063802 | None:intergenic |
| GTGAGCCATCGTCTAGGACT+AGG | 0.510039 | 5.1:+40064550 | MS.gene78791:CDS |
| GAGAGAGAAGCAGCAAAGCA+AGG | 0.511269 | 5.1:+40064138 | MS.gene78791:CDS |
| GTTACGTGGAGGTGTTACTT+TGG | 0.529557 | 5.1:+40065276 | MS.gene78791:CDS |
| GGCAGTTGAGAGTACGTTGT+CGG | 0.546754 | 5.1:+40065318 | MS.gene78791:CDS |
| ACTTGATGTGTTAGACATGA+AGG | 0.578357 | 5.1:+40064528 | MS.gene78791:intron |
| GATACCACAAGGTAATCATT+CGG | 0.580909 | 5.1:+40065587 | MS.gene78791:CDS |
| GTGGAGGTGTTACTTTGGTG+AGG | 0.581557 | 5.1:+40065281 | MS.gene78791:CDS |
| GAAGCGTAAAAGAATGTTCA+GGG | 0.583026 | 5.1:+40065360 | MS.gene78791:CDS |
| TTAGAATATGATGAAGATGT+TGG | 0.594551 | 5.1:+40065537 | MS.gene78791:CDS |
| ATGAAGGTGAGCCATCGTCT+AGG | 0.597848 | 5.1:+40064544 | MS.gene78791:CDS |
| AAATAGAAGAGTACATAGCA+TGG | 0.598427 | 5.1:+40063954 | MS.gene78791:CDS |
| CCTCACTGAGAACTCACCTA+AGG | 0.600047 | 5.1:+40065396 | MS.gene78791:CDS |
| AATAGAAGAGTACATAGCAT+GGG | 0.631081 | 5.1:+40063955 | MS.gene78791:CDS |
| CTTAGGTGAGTTCTCAGTGA+GGG | 0.632171 | 5.1:-40065395 | None:intergenic |
| CCGCAAAGAGACTCAAATCG+TGG | 0.650639 | 5.1:-40062620 | None:intergenic |
| CGGAGAAAATAAGTCAGTGG+AGG | 0.655882 | 5.1:+40065338 | MS.gene78791:CDS |
| TGTCGGAGAAAATAAGTCAG+TGG | 0.667783 | 5.1:+40065335 | MS.gene78791:CDS |
| TGCAGTGACCTGATACCACA+AGG | 0.683122 | 5.1:+40065576 | MS.gene78791:CDS |
| GGTGAGGCCAGAAGAACGCG+CGG | 0.684052 | 5.1:+40065297 | MS.gene78791:CDS |
| TCAACCGAATGATTACCTTG+TGG | 0.690079 | 5.1:-40065591 | None:intergenic |
| TTACTCCTAGTCCTAGACGA+TGG | 0.698257 | 5.1:-40064555 | None:intergenic |
| ATCAAGTTGAACAAGTTACG+TGG | 0.698323 | 5.1:+40065262 | MS.gene78791:CDS |
| AAGTTGAACAAGTTACGTGG+AGG | 0.731034 | 5.1:+40065265 | MS.gene78791:CDS |
| CCTTAGGTGAGTTCTCAGTG+AGG | 0.748594 | 5.1:-40065396 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTATTAGATAATATTGA+AGG | + | chr5.1:40063106-40063125 | MS.gene78791:intron | 15.0% |
| !! | ATTATATTAGTAGTAATAGA+AGG | - | chr5.1:40065493-40065512 | None:intergenic | 15.0% |
| !! | TTGTAATCTGTAAATATATT+TGG | + | chr5.1:40064475-40064494 | MS.gene78791:intron | 15.0% |
| !! | AAAAAGAATAATCAATGACA+GGG | - | chr5.1:40063034-40063053 | None:intergenic | 20.0% |
| !! | AAAAGAAACCTTAAATTCTT+TGG | - | chr5.1:40065425-40065444 | None:intergenic | 20.0% |
| !! | AAAGAAACCTTAAATTCTTT+GGG | - | chr5.1:40065424-40065443 | None:intergenic | 20.0% |
| !! | AACAGAAATATAAGTTATAG+TGG | + | chr5.1:40064607-40064626 | MS.gene78791:intron | 20.0% |
| !! | AATATAAGGAAAAAAAGTAG+TGG | + | chr5.1:40064740-40064759 | MS.gene78791:intron | 20.0% |
| !! | AATGTTGTTCAATTAAGATA+TGG | + | chr5.1:40065198-40065217 | MS.gene78791:intron | 20.0% |
| !! | AATTTGTACTTCTAACATAT+CGG | - | chr5.1:40064240-40064259 | None:intergenic | 20.0% |
| !! | ACAGAAATATAAGTTATAGT+GGG | + | chr5.1:40064608-40064627 | MS.gene78791:intron | 20.0% |
| !! | ATGGAAAAGATAATCAAAAT+CGG | - | chr5.1:40063259-40063278 | None:intergenic | 20.0% |
| !! | TTACATTTCTTGAGATAAAA+GGG | - | chr5.1:40064171-40064190 | None:intergenic | 20.0% |
| !!! | TACTTATTTCTAGATTGTAA+TGG | + | chr5.1:40063603-40063622 | MS.gene78791:intron | 20.0% |
| !!! | TGTTGTTTTAACATTTTCTA+AGG | - | chr5.1:40062995-40063014 | None:intergenic | 20.0% |
| !!! | TTTGTGTTCTTTTTTTACAT+TGG | + | chr5.1:40064968-40064987 | MS.gene78791:intron | 20.0% |
| !!! | TTTTTATTTTAACTTAGAGC+TGG | + | chr5.1:40062833-40062852 | MS.gene78791:intron | 20.0% |
| !!! | TTTTTCCTTATATTTCATTC+CGG | - | chr5.1:40064734-40064753 | None:intergenic | 20.0% |
| ! | AAATCTACAATAGTAATCCA+AGG | - | chr5.1:40064920-40064939 | None:intergenic | 25.0% |
| ! | AAATGAACACATCAAGAAAA+AGG | - | chr5.1:40062697-40062716 | None:intergenic | 25.0% |
| ! | AATATTAATTTCCAACCCAA+TGG | - | chr5.1:40063520-40063539 | None:intergenic | 25.0% |
| ! | ACTAATAAAACTTACACCAT+TGG | - | chr5.1:40064019-40064038 | None:intergenic | 25.0% |
| ! | AGAAATATAAGTTATAGTGG+GGG | + | chr5.1:40064610-40064629 | MS.gene78791:intron | 25.0% |
| ! | AGATAGTTCCATATAATTCT+TGG | + | chr5.1:40063463-40063482 | MS.gene78791:intron | 25.0% |
| ! | ATATTGAATGTCTCATATCT+TGG | - | chr5.1:40064323-40064342 | None:intergenic | 25.0% |
| ! | CAGAAATATAAGTTATAGTG+GGG | + | chr5.1:40064609-40064628 | MS.gene78791:intron | 25.0% |
| ! | CATCTATAAAATTCTACTTC+AGG | + | chr5.1:40065225-40065244 | MS.gene78791:intron | 25.0% |
| ! | CTAAGGATTAATTTCAATCT+TGG | - | chr5.1:40062978-40062997 | None:intergenic | 25.0% |
| ! | CTAATATAATTGAACATTGC+AGG | + | chr5.1:40065503-40065522 | MS.gene78791:intron | 25.0% |
| ! | CTTACATTTCTTGAGATAAA+AGG | - | chr5.1:40064172-40064191 | None:intergenic | 25.0% |
| ! | CTTCCTAAATTAAACCTATA+AGG | - | chr5.1:40064586-40064605 | None:intergenic | 25.0% |
| ! | GAAAAAGAATAATCAATGAC+AGG | - | chr5.1:40063035-40063054 | None:intergenic | 25.0% |
| ! | GAATGCAAATTAATTTCTTC+TGG | + | chr5.1:40062913-40062932 | MS.gene78791:intron | 25.0% |
| ! | TAATTTCAATCTTGGACTAT+GGG | - | chr5.1:40062970-40062989 | None:intergenic | 25.0% |
| ! | TACAACCTGAAAAATAATGA+AGG | - | chr5.1:40062594-40062613 | None:intergenic | 25.0% |
| ! | TATTGAATGTCTCATATCTT+GGG | - | chr5.1:40064322-40064341 | None:intergenic | 25.0% |
| ! | TGTAGAAACCAAGAATTATA+TGG | - | chr5.1:40063474-40063493 | None:intergenic | 25.0% |
| ! | TTAATTTCAATCTTGGACTA+TGG | - | chr5.1:40062971-40062990 | None:intergenic | 25.0% |
| ! | TTAGAATATGATGAAGATGT+TGG | + | chr5.1:40065537-40065556 | MS.gene78791:CDS | 25.0% |
| ! | TTCAAATGATACAATAGTCA+AGG | - | chr5.1:40063310-40063329 | None:intergenic | 25.0% |
| !! | AGACCTTATAGGTTTAATTT+AGG | + | chr5.1:40064580-40064599 | MS.gene78791:intron | 25.0% |
| !! | GTATTGGAATAATTGAGTTT+TGG | + | chr5.1:40064875-40064894 | MS.gene78791:intron | 25.0% |
| !!! | AAATCAACATTGTTTTACAC+CGG | - | chr5.1:40062780-40062799 | None:intergenic | 25.0% |
| !!! | ATTTAAGGTTTCTTTTTGTC+CGG | + | chr5.1:40065429-40065448 | MS.gene78791:intron | 25.0% |
| !!! | CAAGTGTTTTTAACTTAATC+TGG | + | chr5.1:40063673-40063692 | MS.gene78791:intron | 25.0% |
| !!! | GAAATTAATTTGCATTCTTC+TGG | - | chr5.1:40062910-40062929 | None:intergenic | 25.0% |
| AAAAGATAATCAAAATCGGC+AGG | - | chr5.1:40063255-40063274 | None:intergenic | 30.0% | |
| AAAATCTACTAAAACGCCAA+TGG | - | chr5.1:40063580-40063599 | None:intergenic | 30.0% | |
| AAAGAATGTTCAGGGATTTA+TGG | + | chr5.1:40065368-40065387 | MS.gene78791:CDS | 30.0% | |
| AAGAATGTTCAGGGATTTAT+GGG | + | chr5.1:40065369-40065388 | MS.gene78791:CDS | 30.0% | |
| AAGGAGTAAGTAACTATAGA+AGG | - | chr5.1:40064711-40064730 | None:intergenic | 30.0% | |
| ACAGTATTTCGTAAATACAG+TGG | - | chr5.1:40063175-40063194 | None:intergenic | 30.0% | |
| AGAGTAATGAGTAATGTGAA+TGG | - | chr5.1:40064994-40065013 | None:intergenic | 30.0% | |
| ATAAAACTTACACCATTGGA+CGG | - | chr5.1:40064015-40064034 | None:intergenic | 30.0% | |
| ATAACAACTATGATTGTGAC+CGG | - | chr5.1:40065451-40065470 | None:intergenic | 30.0% | |
| ATATAATTGAACATTGCAGG+AGG | + | chr5.1:40065506-40065525 | MS.gene78791:intron | 30.0% | |
| ATATCGGAAGTGATAGAAAA+GGG | - | chr5.1:40064224-40064243 | None:intergenic | 30.0% | |
| ATGATACAATAGTCAAGGAA+AGG | - | chr5.1:40063305-40063324 | None:intergenic | 30.0% | |
| ATTTCGTAAATACAGTGGAT+TGG | - | chr5.1:40063170-40063189 | None:intergenic | 30.0% | |
| CACAAATTTCTTTATTGTGC+AGG | - | chr5.1:40064954-40064973 | None:intergenic | 30.0% | |
| CATGTATTATTAGTGCTACA+CGG | - | chr5.1:40063727-40063746 | None:intergenic | 30.0% | |
| GCACTAATAATACATGTACT+TGG | + | chr5.1:40063731-40063750 | MS.gene78791:intron | 30.0% | |
| GGGAGATAAAATTATGTTGA+AGG | - | chr5.1:40064204-40064223 | None:intergenic | 30.0% | |
| GTAAAGAATAGTACATGAGT+CGG | - | chr5.1:40063076-40063095 | None:intergenic | 30.0% | |
| TAAAGAATAGTACATGAGTC+GGG | - | chr5.1:40063075-40063094 | None:intergenic | 30.0% | |
| TAAGGATCCCAAAGAATTTA+AGG | + | chr5.1:40065414-40065433 | MS.gene78791:CDS | 30.0% | |
| TAATTAGTTGCTATCCTGTT+GGG | + | chr5.1:40064637-40064656 | MS.gene78791:intron | 30.0% | |
| TCCCTTTCAACAATGTAAAA+AGG | - | chr5.1:40065165-40065184 | None:intergenic | 30.0% | |
| TGTTGAAAAGTCAATGTATG+TGG | - | chr5.1:40064797-40064816 | None:intergenic | 30.0% | |
| TTAATTAGTTGCTATCCTGT+TGG | + | chr5.1:40064636-40064655 | MS.gene78791:intron | 30.0% | |
| TTATGACTTTCATCTCATGA+CGG | + | chr5.1:40063866-40063885 | MS.gene78791:intron | 30.0% | |
| TTCTTTATTGTGCAGGAATA+GGG | - | chr5.1:40064947-40064966 | None:intergenic | 30.0% | |
| TTGAAAGGGAATTAGTGATT+TGG | + | chr5.1:40065175-40065194 | MS.gene78791:intron | 30.0% | |
| TTTCTTTATTGTGCAGGAAT+AGG | - | chr5.1:40064948-40064967 | None:intergenic | 30.0% | |
| ! | AAATAGAAGAGTACATAGCA+TGG | + | chr5.1:40063954-40063973 | MS.gene78791:CDS | 30.0% |
| ! | AAGTTTAAGCATTTTCGTAC+CGG | + | chr5.1:40062758-40062777 | MS.gene78791:intron | 30.0% |
| ! | AATAGAAGAGTACATAGCAT+GGG | + | chr5.1:40063955-40063974 | MS.gene78791:CDS | 30.0% |
| ! | CAGGTTTCACTTTAAAAGTA+TGG | - | chr5.1:40065064-40065083 | None:intergenic | 30.0% |
| ! | GAATATTGAGACACAGATTT+TGG | + | chr5.1:40064098-40064117 | MS.gene78791:CDS | 30.0% |
| ! | GCCTTTTTACATTGTTGAAA+GGG | + | chr5.1:40065161-40065180 | MS.gene78791:intron | 30.0% |
| ! | TCACATTTACATGTCTTTTC+AGG | + | chr5.1:40064047-40064066 | MS.gene78791:intron | 30.0% |
| ! | TGCCTTTTTACATTGTTGAA+AGG | + | chr5.1:40065160-40065179 | MS.gene78791:intron | 30.0% |
| !! | TTAAATTCTTTGGGATCCTT+AGG | - | chr5.1:40065415-40065434 | None:intergenic | 30.0% |
| !!! | CATACTTTTAAAGTGAAACC+TGG | + | chr5.1:40065062-40065081 | MS.gene78791:intron | 30.0% |
| AATGATTACCTTGTGGTATC+AGG | - | chr5.1:40065587-40065606 | None:intergenic | 35.0% | |
| ACTTGATGTGTTAGACATGA+AGG | + | chr5.1:40064528-40064547 | MS.gene78791:intron | 35.0% | |
| ATAGTAATCCAAGGAGAAAC+TGG | - | chr5.1:40064911-40064930 | None:intergenic | 35.0% | |
| CATATCGGAAGTGATAGAAA+AGG | - | chr5.1:40064225-40064244 | None:intergenic | 35.0% | |
| CTATAGTTACTTACTCCTTC+CGG | + | chr5.1:40064712-40064731 | MS.gene78791:intron | 35.0% | |
| GAAGCGTAAAAGAATGTTCA+GGG | + | chr5.1:40065360-40065379 | MS.gene78791:CDS | 35.0% | |
| GAGAATGCAGGTAAATAATG+TGG | + | chr5.1:40065128-40065147 | MS.gene78791:intron | 35.0% | |
| GATACCACAAGGTAATCATT+CGG | + | chr5.1:40065587-40065606 | MS.gene78791:CDS | 35.0% | |
| GCATTAGATATCCTCTGTTT+GGG | + | chr5.1:40063428-40063447 | MS.gene78791:intron | 35.0% | |
| GGATGACATATAAGCAAAAG+TGG | - | chr5.1:40064821-40064840 | None:intergenic | 35.0% | |
| GGTTAGTAACAATGCCAAAA+GGG | - | chr5.1:40065020-40065039 | None:intergenic | 35.0% | |
| TAAAACTTACACCATTGGAC+GGG | - | chr5.1:40064014-40064033 | None:intergenic | 35.0% | |
| TAATATCACCAGTAAGCTAC+AGG | - | chr5.1:40064427-40064446 | None:intergenic | 35.0% | |
| TAGCAATAATACCCAAACAG+AGG | - | chr5.1:40063442-40063461 | None:intergenic | 35.0% | |
| TAGGAGTAAGAAGACCTTAT+AGG | + | chr5.1:40064569-40064588 | MS.gene78791:intron | 35.0% | |
| TCCTTATATTTCATTCCGGA+AGG | - | chr5.1:40064730-40064749 | None:intergenic | 35.0% | |
| TCCTTCCGGAATGAAATATA+AGG | + | chr5.1:40064726-40064745 | MS.gene78791:intron | 35.0% | |
| TCGTTTATGTGGATACCATT+GGG | + | chr5.1:40063502-40063521 | MS.gene78791:intron | 35.0% | |
| TGTTACTAACCGTCTAAGAA+GGG | + | chr5.1:40065029-40065048 | MS.gene78791:intron | 35.0% | |
| TTGTTACTAACCGTCTAAGA+AGG | + | chr5.1:40065028-40065047 | MS.gene78791:intron | 35.0% | |
| ! | CTCATTACTCTATTCCCTTT+TGG | + | chr5.1:40065003-40065022 | MS.gene78791:intron | 35.0% |
| ! | CTTTTGCTTATATGTCATCC+CGG | + | chr5.1:40064821-40064840 | MS.gene78791:intron | 35.0% |
| !! | ATCAAGTTGAACAAGTTACG+TGG | + | chr5.1:40065262-40065281 | MS.gene78791:CDS | 35.0% |
| !! | GCATGCCTTCATTATTTTTC+AGG | + | chr5.1:40062586-40062605 | MS.gene78791:CDS | 35.0% |
| !!! | GGAATAATTGAGTTTTGGAC+TGG | + | chr5.1:40064880-40064899 | MS.gene78791:intron | 35.0% |
| AAAACTTACACCATTGGACG+GGG | - | chr5.1:40064013-40064032 | None:intergenic | 40.0% | |
| AAGTTGAACAAGTTACGTGG+AGG | + | chr5.1:40065265-40065284 | MS.gene78791:CDS | 40.0% | |
| ATACATGTACTTGGACTTGC+AGG | + | chr5.1:40063740-40063759 | MS.gene78791:intron | 40.0% | |
| CAAGCATATTGCTTAGTGAG+TGG | + | chr5.1:40063406-40063425 | MS.gene78791:intron | 40.0% | |
| CGGTTAGTAACAATGCCAAA+AGG | - | chr5.1:40065021-40065040 | None:intergenic | 40.0% | |
| CTGGAAGTCTCTCTTACTAT+GGG | + | chr5.1:40062932-40062951 | MS.gene78791:intron | 40.0% | |
| GCGGTACATTTGACAATGAT+GGG | + | chr5.1:40062639-40062658 | MS.gene78791:CDS | 40.0% | |
| GGAAGAATGTGTTGAAGTTG+TGG | + | chr5.1:40062884-40062903 | MS.gene78791:intron | 40.0% | |
| GGCATTAGATATCCTCTGTT+TGG | + | chr5.1:40063427-40063446 | MS.gene78791:intron | 40.0% | |
| GTCGTTTATGTGGATACCAT+TGG | + | chr5.1:40063501-40063520 | MS.gene78791:intron | 40.0% | |
| TAATGTGTTACACTGTTGCC+AGG | - | chr5.1:40065083-40065102 | None:intergenic | 40.0% | |
| TCAACCGAATGATTACCTTG+TGG | - | chr5.1:40065594-40065613 | None:intergenic | 40.0% | |
| TCTATTTCACTTCTACGCTC+TGG | - | chr5.1:40063941-40063960 | None:intergenic | 40.0% | |
| TCTGGAAGTCTCTCTTACTA+TGG | + | chr5.1:40062931-40062950 | MS.gene78791:intron | 40.0% | |
| TGCGGTACATTTGACAATGA+TGG | + | chr5.1:40062638-40062657 | MS.gene78791:CDS | 40.0% | |
| TGCTACACGGTTCTCATAAT+AGG | - | chr5.1:40063714-40063733 | None:intergenic | 40.0% | |
| TGGAAGTCTCTCTTACTATG+GGG | + | chr5.1:40062933-40062952 | MS.gene78791:intron | 40.0% | |
| TGGCATAACAGGCTCTTAAA+AGG | + | chr5.1:40063894-40063913 | MS.gene78791:intron | 40.0% | |
| TGGTATCCACATAAACGACA+CGG | - | chr5.1:40063500-40063519 | None:intergenic | 40.0% | |
| TGGTTAATCCAGTTTCTCCT+TGG | + | chr5.1:40064900-40064919 | MS.gene78791:intron | 40.0% | |
| TGTCCTGAAGAAGTCAACAT+AGG | + | chr5.1:40062863-40062882 | MS.gene78791:intron | 40.0% | |
| TGTCGGAGAAAATAAGTCAG+TGG | + | chr5.1:40065335-40065354 | MS.gene78791:CDS | 40.0% | |
| TGTTAGCATCCCTTCTTAGA+CGG | - | chr5.1:40065041-40065060 | None:intergenic | 40.0% | |
| TTACCTGCATTCTCATTCTC+AGG | - | chr5.1:40065122-40065141 | None:intergenic | 40.0% | |
| TTATGTGGATACCATTGGGT+TGG | + | chr5.1:40063506-40063525 | MS.gene78791:intron | 40.0% | |
| ! | ACTTCAGTTAGTTTCCCAAC+AGG | - | chr5.1:40064654-40064673 | None:intergenic | 40.0% |
| ! | CAACAATGTAAAAAGGCACG+TGG | - | chr5.1:40065158-40065177 | None:intergenic | 40.0% |
| ! | GGAAGCGTAAAAGAATGTTC+AGG | + | chr5.1:40065359-40065378 | MS.gene78791:CDS | 40.0% |
| ! | TCTACTTCAGGTTCAAGAAC+TGG | + | chr5.1:40065237-40065256 | MS.gene78791:intron | 40.0% |
| !! | CTTCCTATGTTGACTTCTTC+AGG | - | chr5.1:40062869-40062888 | None:intergenic | 40.0% |
| !! | GATAGTTCTAACCAGCTCAT+AGG | + | chr5.1:40063553-40063572 | MS.gene78791:intron | 40.0% |
| ACACCTTCCTCGTCATTTAG+AGG | - | chr5.1:40064855-40064874 | None:intergenic | 45.0% | |
| AGAACAACAAACACGTCCAG+AGG | - | chr5.1:40062673-40062692 | None:intergenic | 45.0% | |
| CCACGATTTGAGTCTCTTTG+CGG | + | chr5.1:40062620-40062639 | MS.gene78791:CDS | 45.0% | |
| CGGAGAAAATAAGTCAGTGG+AGG | + | chr5.1:40065338-40065357 | MS.gene78791:CDS | 45.0% | |
| CTTAGGTGAGTTCTCAGTGA+GGG | - | chr5.1:40065398-40065417 | None:intergenic | 45.0% | |
| GAACATTGCAGGAGGATCTT+GGG | + | chr5.1:40065514-40065533 | MS.gene78791:intron | 45.0% | |
| GTACCTCTAAATGACGAGGA+AGG | + | chr5.1:40064849-40064868 | MS.gene78791:intron | 45.0% | |
| TAACCAGCTCATAGGTCCAT+TGG | + | chr5.1:40063561-40063580 | MS.gene78791:intron | 45.0% | |
| TAAGAGCCTGTTATGCCAGA+AGG | - | chr5.1:40063892-40063911 | None:intergenic | 45.0% | |
| TGAACATTGCAGGAGGATCT+TGG | + | chr5.1:40065513-40065532 | MS.gene78791:intron | 45.0% | |
| TGATCTTCCTGCTGAAAGAC+AGG | + | chr5.1:40063795-40063814 | MS.gene78791:CDS | 45.0% | |
| TGCTTATATGTCATCCCGGA+GGG | + | chr5.1:40064825-40064844 | MS.gene78791:intron | 45.0% | |
| TTACCTACCTGTCTTTCAGC+AGG | - | chr5.1:40063805-40063824 | None:intergenic | 45.0% | |
| TTACTCCTAGTCCTAGACGA+TGG | - | chr5.1:40064558-40064577 | None:intergenic | 45.0% | |
| TTGCTTATATGTCATCCCGG+AGG | + | chr5.1:40064824-40064843 | MS.gene78791:intron | 45.0% | |
| ! | ATGACGAGGAAGGTGTGTAT+TGG | + | chr5.1:40064859-40064878 | MS.gene78791:intron | 45.0% |
| ! | CAATAGTCAAGGAAAGGCAC+CGG | - | chr5.1:40063299-40063318 | None:intergenic | 45.0% |
| ! | CGGCAGGATTTGTTTCAGTA+TGG | - | chr5.1:40063239-40063258 | None:intergenic | 45.0% |
| !! | AATAGTCAAGGAAAGGCACC+GGG | - | chr5.1:40063298-40063317 | None:intergenic | 45.0% |
| !! | ACAATGCCGTGTCGTTTATG+TGG | + | chr5.1:40063491-40063510 | MS.gene78791:intron | 45.0% |
| !! | ATGATGGGTATGTTCACCTC+TGG | + | chr5.1:40062654-40062673 | MS.gene78791:intron | 45.0% |
| !! | GTTACGTGGAGGTGTTACTT+TGG | + | chr5.1:40065276-40065295 | MS.gene78791:CDS | 45.0% |
| !! | TCATTTAGAGGTACTCCCTC+CGG | - | chr5.1:40064843-40064862 | None:intergenic | 45.0% |
| !!! | ATTTTAGAGCATGTCCTGCC+CGG | + | chr5.1:40063277-40063296 | MS.gene78791:intron | 45.0% |
| ACCAGTAAGCTACAGGCGAA+AGG | - | chr5.1:40064420-40064439 | None:intergenic | 50.0% | |
| ATGAAGGTGAGCCATCGTCT+AGG | + | chr5.1:40064544-40064563 | MS.gene78791:CDS | 50.0% | |
| CAGTAAGCTACAGGCGAAAG+GGG | - | chr5.1:40064418-40064437 | None:intergenic | 50.0% | |
| CCAGTAAGCTACAGGCGAAA+GGG | - | chr5.1:40064419-40064438 | None:intergenic | 50.0% | |
| CCGCAAAGAGACTCAAATCG+TGG | - | chr5.1:40062623-40062642 | None:intergenic | 50.0% | |
| CCTCACTGAGAACTCACCTA+AGG | + | chr5.1:40065396-40065415 | MS.gene78791:CDS | 50.0% | |
| CCTTAGGTGAGTTCTCAGTG+AGG | - | chr5.1:40065399-40065418 | None:intergenic | 50.0% | |
| CTTCCTGCTGAAAGACAGGT+AGG | + | chr5.1:40063799-40063818 | MS.gene78791:intron | 50.0% | |
| GAGAGAGAAGCAGCAAAGCA+AGG | + | chr5.1:40064138-40064157 | MS.gene78791:CDS | 50.0% | |
| TGCAGTGACCTGATACCACA+AGG | + | chr5.1:40065576-40065595 | MS.gene78791:CDS | 50.0% | |
| TGTTTGTCTTCCCCGTCCAA+TGG | + | chr5.1:40064000-40064019 | MS.gene78791:intron | 50.0% | |
| TTCATCTCATGACGGCCTTC+TGG | + | chr5.1:40063874-40063893 | MS.gene78791:intron | 50.0% | |
| ! | GGCAGTTGAGAGTACGTTGT+CGG | + | chr5.1:40065318-40065337 | MS.gene78791:CDS | 50.0% |
| !! | CATTTAGAGGTACTCCCTCC+GGG | - | chr5.1:40064842-40064861 | None:intergenic | 50.0% |
| !! | GGGAGTACCTCTAAATGACG+AGG | + | chr5.1:40064845-40064864 | MS.gene78791:intron | 50.0% |
| !! | GGGCAGGACATGCTCTAAAA+TGG | - | chr5.1:40063278-40063297 | None:intergenic | 50.0% |
| !! | GTGGAGGTGTTACTTTGGTG+AGG | + | chr5.1:40065281-40065300 | MS.gene78791:CDS | 50.0% |
| ACGCCAATGGACCTATGAGC+TGG | - | chr5.1:40063567-40063586 | None:intergenic | 55.0% | |
| CCCTTTCGCCTGTAGCTTAC+TGG | + | chr5.1:40064416-40064435 | MS.gene78791:intron | 55.0% | |
| GCGCCTGAGAATGAGAATGC+AGG | + | chr5.1:40065116-40065135 | MS.gene78791:intron | 55.0% | |
| TGACGGCCTTCTGGCATAAC+AGG | + | chr5.1:40063883-40063902 | MS.gene78791:intron | 55.0% | |
| ! | GTGAGCCATCGTCTAGGACT+AGG | + | chr5.1:40064550-40064569 | MS.gene78791:CDS | 55.0% |
| GCTTGCGCACGCAAACGCAA+TGG | - | chr5.1:40063391-40063410 | None:intergenic | 60.0% | |
| TCAACTGCCGCGCGTTCTTC+TGG | - | chr5.1:40065307-40065326 | None:intergenic | 60.0% | |
| GGTGAGGCCAGAAGAACGCG+CGG | + | chr5.1:40065297-40065316 | MS.gene78791:CDS | 65.0% | |
| !! | GTCAAGGAAAGGCACCGGGC+AGG | - | chr5.1:40063294-40063313 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 40062584 | 40065635 | 40062584 | ID=MS.gene78791 |
| chr5.1 | mRNA | 40062584 | 40065635 | 40062584 | ID=MS.gene78791.t1;Parent=MS.gene78791 |
| chr5.1 | exon | 40062584 | 40062660 | 40062584 | ID=MS.gene78791.t1.exon1;Parent=MS.gene78791.t1 |
| chr5.1 | CDS | 40062584 | 40062660 | 40062584 | ID=cds.MS.gene78791.t1;Parent=MS.gene78791.t1 |
| chr5.1 | exon | 40063762 | 40063816 | 40063762 | ID=MS.gene78791.t1.exon2;Parent=MS.gene78791.t1 |
| chr5.1 | CDS | 40063762 | 40063816 | 40063762 | ID=cds.MS.gene78791.t1;Parent=MS.gene78791.t1 |
| chr5.1 | exon | 40063905 | 40063979 | 40063905 | ID=MS.gene78791.t1.exon3;Parent=MS.gene78791.t1 |
| chr5.1 | CDS | 40063905 | 40063979 | 40063905 | ID=cds.MS.gene78791.t1;Parent=MS.gene78791.t1 |
| chr5.1 | exon | 40064069 | 40064186 | 40064069 | ID=MS.gene78791.t1.exon4;Parent=MS.gene78791.t1 |
| chr5.1 | CDS | 40064069 | 40064186 | 40064069 | ID=cds.MS.gene78791.t1;Parent=MS.gene78791.t1 |
| chr5.1 | exon | 40064542 | 40064573 | 40064542 | ID=MS.gene78791.t1.exon5;Parent=MS.gene78791.t1 |
| chr5.1 | CDS | 40064542 | 40064573 | 40064542 | ID=cds.MS.gene78791.t1;Parent=MS.gene78791.t1 |
| chr5.1 | exon | 40065247 | 40065435 | 40065247 | ID=MS.gene78791.t1.exon6;Parent=MS.gene78791.t1 |
| chr5.1 | CDS | 40065247 | 40065435 | 40065247 | ID=cds.MS.gene78791.t1;Parent=MS.gene78791.t1 |
| chr5.1 | exon | 40065525 | 40065635 | 40065525 | ID=MS.gene78791.t1.exon7;Parent=MS.gene78791.t1 |
| chr5.1 | CDS | 40065525 | 40065635 | 40065525 | ID=cds.MS.gene78791.t1;Parent=MS.gene78791.t1 |
| Gene Sequence |
| Protein sequence |
