Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78938.t1 | XP_003612840.2 | 96.7 | 241 | 8 | 0 | 1 | 241 | 1 | 241 | 1.20E-110 | 409.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78938.t1 | P93654 | 65.7 | 245 | 76 | 2 | 1 | 241 | 1 | 241 | 3.0e-65 | 250.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78938.t1 | G7KCF3 | 96.7 | 241 | 8 | 0 | 1 | 241 | 1 | 241 | 8.9e-111 | 409.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78938 | MS.gene81965 | PPI |
| MS.gene013657 | MS.gene78938 | PPI |
| MS.gene78938 | MS.gene02663 | PPI |
| MS.gene78938 | MS.gene052932 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78938.t1 | MTR_5g029650 | 97.761 | 268 | 6 | 0 | 1 | 268 | 1 | 268 | 0.0 | 530 |
| MS.gene78938.t1 | MTR_8g066340 | 84.733 | 262 | 34 | 1 | 1 | 256 | 1 | 262 | 2.45e-149 | 418 |
| MS.gene78938.t1 | MTR_7g084590 | 56.015 | 266 | 115 | 1 | 1 | 266 | 1 | 264 | 2.25e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78938.t1 | AT5G46860 | 76.538 | 260 | 53 | 2 | 1 | 256 | 1 | 256 | 1.11e-140 | 396 |
| MS.gene78938.t1 | AT4G17730 | 71.648 | 261 | 61 | 4 | 1 | 251 | 1 | 258 | 2.81e-113 | 327 |
| MS.gene78938.t1 | AT4G17730 | 75.102 | 245 | 52 | 3 | 1 | 236 | 1 | 245 | 3.10e-113 | 326 |
| MS.gene78938.t1 | AT5G16830 | 61.940 | 268 | 89 | 3 | 1 | 256 | 1 | 267 | 3.72e-112 | 324 |
| MS.gene78938.t1 | AT1G32270 | 53.719 | 242 | 91 | 5 | 26 | 252 | 106 | 341 | 4.52e-72 | 224 |
| MS.gene78938.t1 | AT1G32270 | 53.680 | 231 | 86 | 5 | 26 | 241 | 106 | 330 | 3.74e-66 | 211 |
Find 55 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTACTTCTGGTGATATT+TGG | 0.187580 | 5.3:+18610885 | MS.gene78938:CDS |
| GCGGAGTTCGGGCGTGTCTT+TGG | 0.216250 | 5.3:-18607762 | None:intergenic |
| CGGAGTTCGGGCGTGTCTTT+GGG | 0.218987 | 5.3:-18607761 | None:intergenic |
| TTTAGCATCTGCTATCTTCT+TGG | 0.250765 | 5.3:-18609045 | None:intergenic |
| AGAACAACATGCCCTTCTTT+TGG | 0.259659 | 5.3:+18609356 | MS.gene78938:CDS |
| CTTGATCTTTGTGTCTTTGA+AGG | 0.292284 | 5.3:-18610338 | None:intergenic |
| TCACAGTTTCTCGCGGAGTT+CGG | 0.312554 | 5.3:-18607774 | None:intergenic |
| TATATAGGCGTGCTTACTTC+TGG | 0.313700 | 5.3:+18610875 | MS.gene78938:intron |
| GAAGATAGCAGATGCTAAAT+TGG | 0.316353 | 5.3:+18609049 | MS.gene78938:CDS |
| CACAGTTTCTCGCGGAGTTC+GGG | 0.319462 | 5.3:-18607773 | None:intergenic |
| GGTCTTGTTTGCCGTTGATT+AGG | 0.322423 | 5.3:-18607655 | None:intergenic |
| ACAAAGATCAAGTTCATCTT+TGG | 0.324322 | 5.3:+18610349 | MS.gene78938:CDS |
| GAAGGAAATCTCATTATCTA+AGG | 0.366500 | 5.3:-18609975 | None:intergenic |
| TTACTTCACCTATCTGCTGC+TGG | 0.383436 | 5.3:-18610042 | None:intergenic |
| GAGACTTCATATTGGACAAT+TGG | 0.402688 | 5.3:+18607890 | MS.gene78938:CDS |
| TTTCTGCCCTGCAGCTATAC+AGG | 0.405514 | 5.3:+18609300 | MS.gene78938:intron |
| CTCAATGATAGCCTCATTGA+AGG | 0.411578 | 5.3:-18609993 | None:intergenic |
| CGCATGAAGTTCAGCCATCC+AGG | 0.441605 | 5.3:+18609159 | MS.gene78938:CDS |
| GTTGATTAGGTTTCGCCGGC+CGG | 0.442055 | 5.3:-18607642 | None:intergenic |
| CACAAGACGAGACTTCATAT+TGG | 0.470035 | 5.3:+18607882 | MS.gene78938:CDS |
| CCGACGCAAGCCGTAGCTTC+CGG | 0.470130 | 5.3:+18607677 | MS.gene78938:CDS |
| CAAGAAATCCAGCAGCAGAT+AGG | 0.473920 | 5.3:+18610034 | MS.gene78938:CDS |
| TGAACTTCATGCGGAACAAA+AGG | 0.476996 | 5.3:-18609149 | None:intergenic |
| CATGAACAAGGAGCAATGAT+TGG | 0.477945 | 5.3:+18610097 | MS.gene78938:CDS |
| CGGAAGCTACGGCTTGCGTC+GGG | 0.478636 | 5.3:-18607676 | None:intergenic |
| ACCTTCTGGATTCCAAAAGA+AGG | 0.479185 | 5.3:-18609368 | None:intergenic |
| TTCATGAGAATTCTCAATGT+TGG | 0.493350 | 5.3:-18610282 | None:intergenic |
| CCGGAAGCTACGGCTTGCGT+CGG | 0.501544 | 5.3:-18607677 | None:intergenic |
| CAGAGACTCGTTAACACTCT+CGG | 0.506952 | 5.3:+18607734 | MS.gene78938:CDS |
| CTTCAATGAGGCTATCATTG+AGG | 0.510978 | 5.3:+18609994 | MS.gene78938:CDS |
| GGAGTTCGGGCGTGTCTTTG+GGG | 0.514990 | 5.3:-18607760 | None:intergenic |
| TTCTCATGAAGCCACTGCCC+AGG | 0.520606 | 5.3:+18610295 | MS.gene78938:CDS |
| TGCCGTTGATTAGGTTTCGC+CGG | 0.532904 | 5.3:-18607646 | None:intergenic |
| GTTAACGAGTCTCTGAAAAG+TGG | 0.541432 | 5.3:-18607726 | None:intergenic |
| CTGAAACACGCCGGAAGCTA+CGG | 0.560566 | 5.3:-18607687 | None:intergenic |
| CACAACGTCTTGCAGCTGAG+AGG | 0.569413 | 5.3:+18609111 | MS.gene78938:CDS |
| ACAACGTCTTGCAGCTGAGA+GGG | 0.574975 | 5.3:+18609112 | MS.gene78938:CDS |
| GAGTTCGGGCGTGTCTTTGG+GGG | 0.575373 | 5.3:-18607759 | None:intergenic |
| GGCCGGCGAAACCTAATCAA+CGG | 0.580099 | 5.3:+18607644 | MS.gene78938:CDS |
| CCTTCTGGATTCCAAAAGAA+GGG | 0.581571 | 5.3:-18609367 | None:intergenic |
| TTCAAGACTTAGAATCCGGC+CGG | 0.585824 | 5.3:+18607627 | MS.gene78938:CDS |
| ACAATTGGTGAAGGATACTT+CGG | 0.586301 | 5.3:+18607905 | MS.gene78938:CDS |
| AGCTATACAGGCAGTGAAGT+AGG | 0.592494 | 5.3:+18609312 | MS.gene78938:intron |
| GCTGTGCTTGTTCATGAACA+AGG | 0.593820 | 5.3:+18610085 | MS.gene78938:CDS |
| TAATGAGATTTCCTTCAATG+AGG | 0.608273 | 5.3:+18609982 | MS.gene78938:CDS |
| ATCATTGAGGAAAGAGAACA+AGG | 0.615134 | 5.3:+18610007 | MS.gene78938:CDS |
| TCATATTGGACAATTGGTGA+AGG | 0.616859 | 5.3:+18607896 | MS.gene78938:CDS |
| CTGGATGGCTGAACTTCATG+CGG | 0.617705 | 5.3:-18609158 | None:intergenic |
| AGTGTTGAAAGAATTTCAGA+AGG | 0.622981 | 5.3:+18609088 | MS.gene78938:CDS |
| TTATTCATTCTGCAGACAGG+AGG | 0.640635 | 5.3:+18609946 | MS.gene78938:intron |
| ACATTGGTCAGTCACCTGGA+TGG | 0.644850 | 5.3:-18609173 | None:intergenic |
| GAGTCTCTGAAAAGTGGAGA+CGG | 0.652024 | 5.3:-18607720 | None:intergenic |
| TGATCTCTCACAGTTTCTCG+CGG | 0.652360 | 5.3:-18607781 | None:intergenic |
| GGTGTTGATCTGAAACACGC+CGG | 0.724240 | 5.3:-18607696 | None:intergenic |
| TCTCTGAAAAGTGGAGACGG+CGG | 0.749722 | 5.3:-18607717 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATATATAATTATATT+AGG | + | chr5.3:18609754-18609773 | MS.gene78938:intron | 0.0% |
| !! | AATATATAGTTAATAACTTT+AGG | + | chr5.3:18610546-18610565 | MS.gene78938:intron | 10.0% |
| !! | ATATACTATCAATAAAAATA+TGG | + | chr5.3:18608581-18608600 | MS.gene78938:intron | 10.0% |
| !! | CAACAAAAAATAAAAAATAA+AGG | - | chr5.3:18610141-18610160 | None:intergenic | 10.0% |
| !! | TTATTAACTATATATTATGT+AGG | - | chr5.3:18610542-18610561 | None:intergenic | 10.0% |
| !!! | TTTATTTTTATGAAAAATTC+AGG | + | chr5.3:18608366-18608385 | MS.gene78938:intron | 10.0% |
| !! | AAAAAATAAAAAATAAAGGG+TGG | - | chr5.3:18610137-18610156 | None:intergenic | 15.0% |
| !! | AAAAATAAAAAATAAAGGGT+GGG | - | chr5.3:18610136-18610155 | None:intergenic | 15.0% |
| !! | AATAAATAATATCTTGAAAG+TGG | - | chr5.3:18609439-18609458 | None:intergenic | 15.0% |
| !! | TATCACATCATATATTATAT+TGG | - | chr5.3:18609512-18609531 | None:intergenic | 15.0% |
| !!! | CTTTAAAAGATAAAAGAAAA+AGG | - | chr5.3:18610795-18610814 | None:intergenic | 15.0% |
| !!! | TTCAATTTTAAGATATTGAT+TGG | + | chr5.3:18607842-18607861 | MS.gene78938:intron | 15.0% |
| !! | AAGAAACTAAAACAATCAAA+TGG | - | chr5.3:18609916-18609935 | None:intergenic | 20.0% |
| !! | AATTTCTTTATTGTATTTGC+AGG | + | chr5.3:18609019-18609038 | MS.gene78938:intron | 20.0% |
| !! | ATAATTATATTAGGCTGAAA+TGG | + | chr5.3:18609763-18609782 | MS.gene78938:intron | 20.0% |
| !! | ATTATTATCCAAAGTTTATG+AGG | - | chr5.3:18609483-18609502 | None:intergenic | 20.0% |
| !! | ATTTCTATTTATATGGAGAA+AGG | + | chr5.3:18610660-18610679 | MS.gene78938:intron | 20.0% |
| !! | CTAAATTGATCATAATGAAT+CGG | + | chr5.3:18608786-18608805 | MS.gene78938:intron | 20.0% |
| !! | GACTAATTTATGTTAATTGA+TGG | + | chr5.3:18610202-18610221 | MS.gene78938:intron | 20.0% |
| !! | GCAAATTAATCAAAGTTTAA+TGG | + | chr5.3:18608028-18608047 | MS.gene78938:intron | 20.0% |
| !! | GCATTTCATTTCTATTTATA+TGG | + | chr5.3:18610653-18610672 | MS.gene78938:intron | 20.0% |
| !! | TAAATTGATCATAATGAATC+GGG | + | chr5.3:18608787-18608806 | MS.gene78938:intron | 20.0% |
| !! | TCTAAACTATGCAAATATAA+CGG | + | chr5.3:18608083-18608102 | MS.gene78938:intron | 20.0% |
| !! | TTCCTTAAAAAAAAAGAACA+TGG | - | chr5.3:18608905-18608924 | None:intergenic | 20.0% |
| !! | TTTCTATTTATATGGAGAAA+GGG | + | chr5.3:18610661-18610680 | MS.gene78938:intron | 20.0% |
| !!! | AACATCAATTATTTCTCAAA+AGG | + | chr5.3:18609704-18609723 | MS.gene78938:intron | 20.0% |
| !!! | AACCATGTTCTTTTTTTTTA+AGG | + | chr5.3:18608900-18608919 | MS.gene78938:intron | 20.0% |
| !!! | AATAACTTTAGGAGTTAAAA+AGG | + | chr5.3:18610557-18610576 | MS.gene78938:intron | 20.0% |
| !!! | ATAACTTTAGGAGTTAAAAA+GGG | + | chr5.3:18610558-18610577 | MS.gene78938:intron | 20.0% |
| !!! | GATTGGTAATTTGTTTATAT+AGG | + | chr5.3:18607859-18607878 | MS.gene78938:intron | 20.0% |
| !!! | TATTAGTTTAGGGATTAAAT+TGG | + | chr5.3:18608195-18608214 | MS.gene78938:intron | 20.0% |
| !!! | TCATCAAATTTAATTTCATG+TGG | - | chr5.3:18609870-18609889 | None:intergenic | 20.0% |
| !!! | TTCATTTTGTAGATGATATT+GGG | + | chr5.3:18610258-18610277 | MS.gene78938:intron | 20.0% |
| !!! | TTTCATTTTGTAGATGATAT+TGG | + | chr5.3:18610257-18610276 | MS.gene78938:intron | 20.0% |
| ! | AAAATTCATCTTACAAACCA+AGG | + | chr5.3:18608676-18608695 | MS.gene78938:intron | 25.0% |
| ! | AAACATTTATTTCACAAGCA+AGG | - | chr5.3:18608475-18608494 | None:intergenic | 25.0% |
| ! | AAATTCATCTTACAAACCAA+GGG | + | chr5.3:18608677-18608696 | MS.gene78938:intron | 25.0% |
| ! | AATAAACAACTAACAGAACA+TGG | - | chr5.3:18608935-18608954 | None:intergenic | 25.0% |
| ! | ATAAGATGATATATCATCGA+TGG | + | chr5.3:18608638-18608657 | MS.gene78938:intron | 25.0% |
| ! | CTATTAAACTCCAATAACAT+TGG | - | chr5.3:18609192-18609211 | None:intergenic | 25.0% |
| ! | TAGTTTAGAGACTAAATTGA+TGG | - | chr5.3:18608072-18608091 | None:intergenic | 25.0% |
| ! | TGATCAATTTAGTATGAACA+TGG | - | chr5.3:18608778-18608797 | None:intergenic | 25.0% |
| !! | ATGTTGTTCTTGACTTTTAT+CGG | - | chr5.3:18609346-18609365 | None:intergenic | 25.0% |
| !! | CAGCACAATTTTCTAATTAT+GGG | + | chr5.3:18610744-18610763 | MS.gene78938:intron | 25.0% |
| !! | TAACATAAATTAGTCTAGAC+CGG | - | chr5.3:18610197-18610216 | None:intergenic | 25.0% |
| !! | TAACTTTAGGAGTTAAAAAG+GGG | + | chr5.3:18610559-18610578 | MS.gene78938:intron | 25.0% |
| !! | TCAGCACAATTTTCTAATTA+TGG | + | chr5.3:18610743-18610762 | MS.gene78938:intron | 25.0% |
| !! | TGAAATAAATGTTTGTTGCT+TGG | + | chr5.3:18608481-18608500 | MS.gene78938:intron | 25.0% |
| !!! | TCTTTTTATAATTGGGTTGT+TGG | + | chr5.3:18610385-18610404 | MS.gene78938:intron | 25.0% |
| !!! | TTCTTTTGAAATTTGACTGA+TGG | + | chr5.3:18608254-18608273 | MS.gene78938:intron | 25.0% |
| AATAAAAAATAAAGGGTGGG+AGG | - | chr5.3:18610133-18610152 | None:intergenic | 30.0% | |
| AATACCTTCCTCATAAACTT+TGG | + | chr5.3:18609472-18609491 | MS.gene78938:intron | 30.0% | |
| ACAAAGATCAAGTTCATCTT+TGG | + | chr5.3:18610349-18610368 | MS.gene78938:CDS | 30.0% | |
| ACCAACACATAACAAAGAAA+GGG | - | chr5.3:18609627-18609646 | None:intergenic | 30.0% | |
| ACCATACTGAATTAAACCAA+TGG | - | chr5.3:18610617-18610636 | None:intergenic | 30.0% | |
| ACTTAAAAGAAGTCACCTTA+TGG | - | chr5.3:18609797-18609816 | None:intergenic | 30.0% | |
| ATAAAAAATAAAGGGTGGGA+GGG | - | chr5.3:18610132-18610151 | None:intergenic | 30.0% | |
| ATTGGAGTTTAATAGTCGAA+AGG | + | chr5.3:18609197-18609216 | MS.gene78938:intron | 30.0% | |
| ATTGTGCAATACTTATAGCA+CGG | + | chr5.3:18609270-18609289 | MS.gene78938:intron | 30.0% | |
| CAAATTTATGAGGCGATAAT+CGG | + | chr5.3:18609583-18609602 | MS.gene78938:intron | 30.0% | |
| CAATGGCTACATATTCTATT+AGG | - | chr5.3:18610600-18610619 | None:intergenic | 30.0% | |
| CACCAAATTAATTTAGGTGT+GGG | + | chr5.3:18610429-18610448 | MS.gene78938:intron | 30.0% | |
| CATGCATTTGCAAATTTATG+AGG | + | chr5.3:18609573-18609592 | MS.gene78938:intron | 30.0% | |
| CTAATAGAATATGTAGCCAT+TGG | + | chr5.3:18610598-18610617 | MS.gene78938:intron | 30.0% | |
| GAAGGAAATCTCATTATCTA+AGG | - | chr5.3:18609978-18609997 | None:intergenic | 30.0% | |
| GTTTAATTCAGTATGGTTCT+CGG | + | chr5.3:18610620-18610639 | MS.gene78938:intron | 30.0% | |
| TAAAGTTGTGATTGCAATTG+CGG | + | chr5.3:18608431-18608450 | MS.gene78938:intron | 30.0% | |
| TAAGTTCAGTACAATATGTG+AGG | - | chr5.3:18610506-18610525 | None:intergenic | 30.0% | |
| TAATGAGATTTCCTTCAATG+AGG | + | chr5.3:18609982-18610001 | MS.gene78938:CDS | 30.0% | |
| TACCAACACATAACAAAGAA+AGG | - | chr5.3:18609628-18609647 | None:intergenic | 30.0% | |
| TAGTTCAAGGGTTAAATTGA+TGG | + | chr5.3:18608227-18608246 | MS.gene78938:intron | 30.0% | |
| TATTGCACAATTGTATGCAT+AGG | - | chr5.3:18609261-18609280 | None:intergenic | 30.0% | |
| TCTATCAACTCTAATGTTAC+CGG | + | chr5.3:18610175-18610194 | MS.gene78938:intron | 30.0% | |
| TGAAATTTGACTGATGGTTT+AGG | + | chr5.3:18608260-18608279 | MS.gene78938:intron | 30.0% | |
| TTATCCAAAGTTTATGAGGA+AGG | - | chr5.3:18609479-18609498 | None:intergenic | 30.0% | |
| TTCATGAGAATTCTCAATGT+TGG | - | chr5.3:18610285-18610304 | None:intergenic | 30.0% | |
| TTCCCACACCTAAATTAATT+TGG | - | chr5.3:18610434-18610453 | None:intergenic | 30.0% | |
| TTGGAGTTTAATAGTCGAAA+GGG | + | chr5.3:18609198-18609217 | MS.gene78938:intron | 30.0% | |
| ! | AGTGTTGAAAGAATTTCAGA+AGG | + | chr5.3:18609088-18609107 | MS.gene78938:CDS | 30.0% |
| ! | CACACCTAAATTAATTTGGT+GGG | - | chr5.3:18610430-18610449 | None:intergenic | 30.0% |
| ! | CTAAATTGACGGATACTTTA+AGG | + | chr5.3:18608124-18608143 | MS.gene78938:intron | 30.0% |
| ! | GATGTTATGGACTAAATTGA+CGG | + | chr5.3:18608113-18608132 | MS.gene78938:intron | 30.0% |
| ! | TAAATTGGCGAAAGATTTTC+AGG | + | chr5.3:18609064-18609083 | MS.gene78938:CDS | 30.0% |
| ! | TAACGGTATCTAAGATGTTA+TGG | + | chr5.3:18608100-18608119 | MS.gene78938:intron | 30.0% |
| ! | TTTTCTAATTATGGGAGTTG+AGG | + | chr5.3:18610752-18610771 | MS.gene78938:intron | 30.0% |
| !! | AGTTTTCAAGACTTAGAATC+CGG | + | chr5.3:18607623-18607642 | MS.gene78938:CDS | 30.0% |
| !! | ATGGCATAAGTTGTTTTCAT+AGG | - | chr5.3:18608759-18608778 | None:intergenic | 30.0% |
| !! | GAATTTGTTGACATGATCAT+TGG | + | chr5.3:18609834-18609853 | MS.gene78938:intron | 30.0% |
| !! | GTTGTTTCCTCCTTTTATAT+AGG | + | chr5.3:18610860-18610879 | MS.gene78938:intron | 30.0% |
| !!! | GTGACTTCTTTTAAGTTTTC+TGG | + | chr5.3:18609801-18609820 | MS.gene78938:intron | 30.0% |
| ACAATTGGTGAAGGATACTT+CGG | + | chr5.3:18607905-18607924 | MS.gene78938:CDS | 35.0% | |
| ACTCTTCATTATCGCTGAAT+TGG | + | chr5.3:18607803-18607822 | MS.gene78938:intron | 35.0% | |
| AGATACAAGAAATCACCTTC+TGG | - | chr5.3:18609385-18609404 | None:intergenic | 35.0% | |
| AGTAAGCACGCCTATATAAA+AGG | - | chr5.3:18610873-18610892 | None:intergenic | 35.0% | |
| ATCATTGAGGAAAGAGAACA+AGG | + | chr5.3:18610007-18610026 | MS.gene78938:CDS | 35.0% | |
| CCACCAAATTAATTTAGGTG+TGG | + | chr5.3:18610428-18610447 | MS.gene78938:intron | 35.0% | |
| CTTGATCTTTGTGTCTTTGA+AGG | - | chr5.3:18610341-18610360 | None:intergenic | 35.0% | |
| GAAATGGAATTGACACCATA+AGG | + | chr5.3:18609779-18609798 | MS.gene78938:intron | 35.0% | |
| GAAGATAGCAGATGCTAAAT+TGG | + | chr5.3:18609049-18609068 | MS.gene78938:CDS | 35.0% | |
| GAGACTTCATATTGGACAAT+TGG | + | chr5.3:18607890-18607909 | MS.gene78938:CDS | 35.0% | |
| GGTTTCAGTTCACTAAACAA+TGG | - | chr5.3:18610481-18610500 | None:intergenic | 35.0% | |
| GTTTAATGGTATCTAATGCG+TGG | + | chr5.3:18608042-18608061 | MS.gene78938:intron | 35.0% | |
| TAAAAAATAAAGGGTGGGAG+GGG | - | chr5.3:18610131-18610150 | None:intergenic | 35.0% | |
| TCATATTGGACAATTGGTGA+AGG | + | chr5.3:18607896-18607915 | MS.gene78938:CDS | 35.0% | |
| TCCTCCCACCAAATTAATTT+AGG | + | chr5.3:18610423-18610442 | MS.gene78938:intron | 35.0% | |
| TGCTTACTTCTGGTGATATT+TGG | + | chr5.3:18610885-18610904 | MS.gene78938:CDS | 35.0% | |
| TGGAGAAAGTGATAGTTCAA+GGG | + | chr5.3:18608215-18608234 | MS.gene78938:intron | 35.0% | |
| TTCAGTACAATATGTGAGGA+AGG | - | chr5.3:18610502-18610521 | None:intergenic | 35.0% | |
| TTGGAGAAAGTGATAGTTCA+AGG | + | chr5.3:18608214-18608233 | MS.gene78938:intron | 35.0% | |
| TTGTGCAATACTTATAGCAC+GGG | + | chr5.3:18609271-18609290 | MS.gene78938:intron | 35.0% | |
| TTTAGCATCTGCTATCTTCT+TGG | - | chr5.3:18609048-18609067 | None:intergenic | 35.0% | |
| ! | ACCTAAATTAATTTGGTGGG+AGG | - | chr5.3:18610427-18610446 | None:intergenic | 35.0% |
| ! | ATGTTCAGCCTTTTCACTTA+CGG | + | chr5.3:18608314-18608333 | MS.gene78938:intron | 35.0% |
| ! | CCACACCTAAATTAATTTGG+TGG | - | chr5.3:18610431-18610450 | None:intergenic | 35.0% |
| ! | CGCTGAATTGGAAATTTTGT+TGG | + | chr5.3:18607815-18607834 | MS.gene78938:intron | 35.0% |
| ! | TCCCTTTCTTTGTTATGTGT+TGG | + | chr5.3:18609623-18609642 | MS.gene78938:intron | 35.0% |
| !! | ATGGAGAAAGGGATTTGTTT+TGG | + | chr5.3:18610672-18610691 | MS.gene78938:intron | 35.0% |
| !! | ATTGCGGTTTTTAACTGTGA+TGG | + | chr5.3:18608447-18608466 | MS.gene78938:intron | 35.0% |
| !! | GCCATTGGTTTAATTCAGTA+TGG | + | chr5.3:18610613-18610632 | MS.gene78938:intron | 35.0% |
| !! | GGTAACATTAGAGTTGATAG+AGG | - | chr5.3:18610176-18610195 | None:intergenic | 35.0% |
| !! | TGGAGAAAGGGATTTGTTTT+GGG | + | chr5.3:18610673-18610692 | MS.gene78938:intron | 35.0% |
| !!! | CTTCTTTTAAGTTTTCTGGC+TGG | + | chr5.3:18609805-18609824 | MS.gene78938:intron | 35.0% |
| AAGCACGCCTATATAAAAGG+AGG | - | chr5.3:18610870-18610889 | None:intergenic | 40.0% | |
| AATAACATTGGTCAGTCACC+TGG | - | chr5.3:18609180-18609199 | None:intergenic | 40.0% | |
| ACAAAGAAAGGGACATGAAC+AGG | - | chr5.3:18609616-18609635 | None:intergenic | 40.0% | |
| ACCTTCTGGATTCCAAAAGA+AGG | - | chr5.3:18609371-18609390 | None:intergenic | 40.0% | |
| AGGTGACTGACCAATGTTAT+TGG | + | chr5.3:18609179-18609198 | MS.gene78938:intron | 40.0% | |
| CACAAGACGAGACTTCATAT+TGG | + | chr5.3:18607882-18607901 | MS.gene78938:CDS | 40.0% | |
| CATGAACAAGGAGCAATGAT+TGG | + | chr5.3:18610097-18610116 | MS.gene78938:CDS | 40.0% | |
| CCTTCTGGATTCCAAAAGAA+GGG | - | chr5.3:18609370-18609389 | None:intergenic | 40.0% | |
| CTCAATGATAGCCTCATTGA+AGG | - | chr5.3:18609996-18610015 | None:intergenic | 40.0% | |
| CTTCAATGAGGCTATCATTG+AGG | + | chr5.3:18609994-18610013 | MS.gene78938:CDS | 40.0% | |
| GCATTATTCATTCTGCAGAC+AGG | + | chr5.3:18609943-18609962 | MS.gene78938:intron | 40.0% | |
| GTCTGCAGAATGAATAATGC+AGG | - | chr5.3:18609943-18609962 | None:intergenic | 40.0% | |
| TATATAGGCGTGCTTACTTC+TGG | + | chr5.3:18610875-18610894 | MS.gene78938:intron | 40.0% | |
| TGAACTTCATGCGGAACAAA+AGG | - | chr5.3:18609152-18609171 | None:intergenic | 40.0% | |
| TTACAAACCAAGGGTCTGTT+TGG | + | chr5.3:18608686-18608705 | MS.gene78938:intron | 40.0% | |
| TTATTCATTCTGCAGACAGG+AGG | + | chr5.3:18609946-18609965 | MS.gene78938:intron | 40.0% | |
| ! | AACAAGTTGCGATTTTGCCT+GGG | - | chr5.3:18610315-18610334 | None:intergenic | 40.0% |
| ! | AGAACAACATGCCCTTCTTT+TGG | + | chr5.3:18609356-18609375 | MS.gene78938:CDS | 40.0% |
| ! | AGCCTTTTCACTTACGGTTT+CGG | + | chr5.3:18608320-18608339 | MS.gene78938:intron | 40.0% |
| ! | ATTAATTTGGTGGGAGGAAG+AGG | - | chr5.3:18610421-18610440 | None:intergenic | 40.0% |
| ! | GTTAACGAGTCTCTGAAAAG+TGG | - | chr5.3:18607729-18607748 | None:intergenic | 40.0% |
| !!! | AGAAAGGGATTTGTTTTGGG+GGG | + | chr5.3:18610676-18610695 | MS.gene78938:intron | 40.0% |
| !!! | GAGAAAGGGATTTGTTTTGG+GGG | + | chr5.3:18610675-18610694 | MS.gene78938:intron | 40.0% |
| !!! | GGAGAAAGGGATTTGTTTTG+GGG | + | chr5.3:18610674-18610693 | MS.gene78938:intron | 40.0% |
| AAGCACTTGTGAGACTGTGT+GGG | + | chr5.3:18608729-18608748 | MS.gene78938:intron | 45.0% | |
| AGCTATACAGGCAGTGAAGT+AGG | + | chr5.3:18609312-18609331 | MS.gene78938:intron | 45.0% | |
| AGTCAATCCAAACAGACCCT+TGG | - | chr5.3:18608696-18608715 | None:intergenic | 45.0% | |
| CAAGAAATCCAGCAGCAGAT+AGG | + | chr5.3:18610034-18610053 | MS.gene78938:CDS | 45.0% | |
| CACCGAAACCGTAAGTGAAA+AGG | - | chr5.3:18608325-18608344 | None:intergenic | 45.0% | |
| CAGAGACTCGTTAACACTCT+CGG | + | chr5.3:18607734-18607753 | MS.gene78938:CDS | 45.0% | |
| GCTGTGCTTGTTCATGAACA+AGG | + | chr5.3:18610085-18610104 | MS.gene78938:CDS | 45.0% | |
| TAAGCACTTGTGAGACTGTG+TGG | + | chr5.3:18608728-18608747 | MS.gene78938:intron | 45.0% | |
| TGATCTCTCACAGTTTCTCG+CGG | - | chr5.3:18607784-18607803 | None:intergenic | 45.0% | |
| TTACTTCACCTATCTGCTGC+TGG | - | chr5.3:18610045-18610064 | None:intergenic | 45.0% | |
| TTCAAGACTTAGAATCCGGC+CGG | + | chr5.3:18607627-18607646 | MS.gene78938:CDS | 45.0% | |
| ! | CTTTTCACTTACGGTTTCGG+TGG | + | chr5.3:18608323-18608342 | MS.gene78938:intron | 45.0% |
| ! | GAACAAGTTGCGATTTTGCC+TGG | - | chr5.3:18610316-18610335 | None:intergenic | 45.0% |
| ! | GAGTCTCTGAAAAGTGGAGA+CGG | - | chr5.3:18607723-18607742 | None:intergenic | 45.0% |
| !! | GGTCTTGTTTGCCGTTGATT+AGG | - | chr5.3:18607658-18607677 | None:intergenic | 45.0% |
| !!! | CCCTTCTTTTGGAATCCAGA+AGG | + | chr5.3:18609367-18609386 | MS.gene78938:CDS | 45.0% |
| !! | AACAAAAAATAAAAAATAAA+GGG | - | chr5.3:18610140-18610159 | None:intergenic | 5.0% |
| !! | TTATATATAAATAATACAAT+AGG | - | chr5.3:18609747-18609766 | None:intergenic | 5.0% |
| !!! | ATAAATTTTCTTTTTATAAT+TGG | + | chr5.3:18610377-18610396 | MS.gene78938:intron | 5.0% |
| !!! | ATTATATTTATATTAGTTTA+GGG | + | chr5.3:18608185-18608204 | MS.gene78938:intron | 5.0% |
| !!! | TAAATTTTCTTTTTATAATT+GGG | + | chr5.3:18610378-18610397 | MS.gene78938:intron | 5.0% |
| !!! | TATTATATTTATATTAGTTT+AGG | + | chr5.3:18608184-18608203 | MS.gene78938:intron | 5.0% |
| ACAACGTCTTGCAGCTGAGA+GGG | + | chr5.3:18609112-18609131 | MS.gene78938:CDS | 50.0% | |
| ACATTGGTCAGTCACCTGGA+TGG | - | chr5.3:18609176-18609195 | None:intergenic | 50.0% | |
| CTGGATGGCTGAACTTCATG+CGG | - | chr5.3:18609161-18609180 | None:intergenic | 50.0% | |
| TCACAGTTTCTCGCGGAGTT+CGG | - | chr5.3:18607777-18607796 | None:intergenic | 50.0% | |
| TCACTGCCTGTATAGCTGCA+GGG | - | chr5.3:18609309-18609328 | None:intergenic | 50.0% | |
| TTCACTGCCTGTATAGCTGC+AGG | - | chr5.3:18609310-18609329 | None:intergenic | 50.0% | |
| TTCACTTACGGTTTCGGTGG+CGG | + | chr5.3:18608326-18608345 | MS.gene78938:intron | 50.0% | |
| TTTCTGCCCTGCAGCTATAC+AGG | + | chr5.3:18609300-18609319 | MS.gene78938:intron | 50.0% | |
| ! | TCTCTGAAAAGTGGAGACGG+CGG | - | chr5.3:18607720-18607739 | None:intergenic | 50.0% |
| ! | TGCCGTTGATTAGGTTTCGC+CGG | - | chr5.3:18607649-18607668 | None:intergenic | 50.0% |
| !! | GGTGTTGATCTGAAACACGC+CGG | - | chr5.3:18607699-18607718 | None:intergenic | 50.0% |
| CACAACGTCTTGCAGCTGAG+AGG | + | chr5.3:18609111-18609130 | MS.gene78938:CDS | 55.0% | |
| CACAGTTTCTCGCGGAGTTC+GGG | - | chr5.3:18607776-18607795 | None:intergenic | 55.0% | |
| CGCATGAAGTTCAGCCATCC+AGG | + | chr5.3:18609159-18609178 | MS.gene78938:CDS | 55.0% | |
| CTGAAACACGCCGGAAGCTA+CGG | - | chr5.3:18607690-18607709 | None:intergenic | 55.0% | |
| GGCCGGCGAAACCTAATCAA+CGG | + | chr5.3:18607644-18607663 | MS.gene78938:CDS | 55.0% | |
| GTTGATTAGGTTTCGCCGGC+CGG | - | chr5.3:18607645-18607664 | None:intergenic | 55.0% | |
| TTCTCATGAAGCCACTGCCC+AGG | + | chr5.3:18610295-18610314 | MS.gene78938:CDS | 55.0% | |
| ! | TTGCGATTTTGCCTGGGCAG+TGG | - | chr5.3:18610309-18610328 | None:intergenic | 55.0% |
| !!! | AGGGATTTGTTTTGGGGGGC+AGG | + | chr5.3:18610680-18610699 | MS.gene78938:intron | 55.0% |
| !!! | GGATTTGTTTTGGGGGGCAG+GGG | + | chr5.3:18610682-18610701 | MS.gene78938:intron | 55.0% |
| !!! | GGGATTTGTTTTGGGGGGCA+GGG | + | chr5.3:18610681-18610700 | MS.gene78938:intron | 55.0% |
| CGGAGTTCGGGCGTGTCTTT+GGG | - | chr5.3:18607764-18607783 | None:intergenic | 60.0% | |
| GAGTTCGGGCGTGTCTTTGG+GGG | - | chr5.3:18607762-18607781 | None:intergenic | 60.0% | |
| GGAGTTCGGGCGTGTCTTTG+GGG | - | chr5.3:18607763-18607782 | None:intergenic | 60.0% | |
| !! | GCAGGGGTGTGAGGTTTTGG+TGG | + | chr5.3:18610698-18610717 | MS.gene78938:intron | 60.0% |
| CCGACGCAAGCCGTAGCTTC+CGG | + | chr5.3:18607677-18607696 | MS.gene78938:CDS | 65.0% | |
| CCGGAAGCTACGGCTTGCGT+CGG | - | chr5.3:18607680-18607699 | None:intergenic | 65.0% | |
| CGGAAGCTACGGCTTGCGTC+GGG | - | chr5.3:18607679-18607698 | None:intergenic | 65.0% | |
| GCGGAGTTCGGGCGTGTCTT+TGG | - | chr5.3:18607765-18607784 | None:intergenic | 65.0% | |
| !! | GGGGCAGGGGTGTGAGGTTT+TGG | + | chr5.3:18610695-18610714 | MS.gene78938:intron | 65.0% |
| !! | TTTTGGGGGGCAGGGGTGTG+AGG | + | chr5.3:18610689-18610708 | MS.gene78938:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 18607620 | 18610947 | 18607620 | ID=MS.gene78938 |
| chr5.3 | mRNA | 18607620 | 18610947 | 18607620 | ID=MS.gene78938.t1;Parent=MS.gene78938 |
| chr5.3 | exon | 18607620 | 18607792 | 18607620 | ID=MS.gene78938.t1.exon1;Parent=MS.gene78938.t1 |
| chr5.3 | CDS | 18607620 | 18607792 | 18607620 | ID=cds.MS.gene78938.t1;Parent=MS.gene78938.t1 |
| chr5.3 | exon | 18607881 | 18607974 | 18607881 | ID=MS.gene78938.t1.exon2;Parent=MS.gene78938.t1 |
| chr5.3 | CDS | 18607881 | 18607974 | 18607881 | ID=cds.MS.gene78938.t1;Parent=MS.gene78938.t1 |
| chr5.3 | exon | 18609041 | 18609180 | 18609041 | ID=MS.gene78938.t1.exon3;Parent=MS.gene78938.t1 |
| chr5.3 | CDS | 18609041 | 18609180 | 18609041 | ID=cds.MS.gene78938.t1;Parent=MS.gene78938.t1 |
| chr5.3 | exon | 18609314 | 18609388 | 18609314 | ID=MS.gene78938.t1.exon4;Parent=MS.gene78938.t1 |
| chr5.3 | CDS | 18609314 | 18609388 | 18609314 | ID=cds.MS.gene78938.t1;Parent=MS.gene78938.t1 |
| chr5.3 | exon | 18609961 | 18610118 | 18609961 | ID=MS.gene78938.t1.exon5;Parent=MS.gene78938.t1 |
| chr5.3 | CDS | 18609961 | 18610118 | 18609961 | ID=cds.MS.gene78938.t1;Parent=MS.gene78938.t1 |
| chr5.3 | exon | 18610270 | 18610370 | 18610270 | ID=MS.gene78938.t1.exon6;Parent=MS.gene78938.t1 |
| chr5.3 | CDS | 18610270 | 18610370 | 18610270 | ID=cds.MS.gene78938.t1;Parent=MS.gene78938.t1 |
| chr5.3 | exon | 18610882 | 18610947 | 18610882 | ID=MS.gene78938.t1.exon7;Parent=MS.gene78938.t1 |
| chr5.3 | CDS | 18610882 | 18610947 | 18610882 | ID=cds.MS.gene78938.t1;Parent=MS.gene78938.t1 |
| Gene Sequence |
| Protein sequence |
