Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78975.t1 | XP_024635280.1 | 87.7 | 430 | 34 | 2 | 1 | 430 | 1 | 411 | 7.90E-192 | 679.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78975.t1 | Q5XV40 | 30.6 | 382 | 219 | 12 | 1 | 366 | 1 | 352 | 9.9e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78975.t1 | G7JC25 | 92.3 | 366 | 27 | 1 | 1 | 366 | 1 | 365 | 1.7e-172 | 615.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052307 | MS.gene78975 | 0.800318 | 1.52E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene78975 | 0.800637 | 1.31E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78975.t1 | MTR_3g085710 | 93.989 | 366 | 21 | 1 | 1 | 366 | 1 | 365 | 0.0 | 675 |
| MS.gene78975.t1 | MTR_7g022360 | 43.269 | 416 | 147 | 20 | 1 | 366 | 1 | 377 | 2.58e-76 | 243 |
| MS.gene78975.t1 | MTR_7g028590 | 35.509 | 383 | 183 | 13 | 1 | 366 | 1 | 336 | 2.24e-47 | 166 |
| MS.gene78975.t1 | MTR_7g028590 | 38.014 | 292 | 138 | 10 | 1 | 276 | 1 | 265 | 2.39e-40 | 145 |
| MS.gene78975.t1 | MTR_7g028590 | 35.211 | 284 | 123 | 11 | 119 | 386 | 2 | 240 | 3.76e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78975.t1 | AT5G14090 | 34.031 | 382 | 206 | 14 | 1 | 366 | 1 | 352 | 9.89e-39 | 143 |
| MS.gene78975.t1 | AT5G14090 | 33.922 | 283 | 162 | 8 | 1 | 270 | 1 | 271 | 1.43e-28 | 114 |
Find 94 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATGCATGGCAGATTTAT+TGG | 0.247230 | 3.1:-68482979 | None:intergenic |
| TGCCACCGCCAAGGGTAATT+TGG | 0.255351 | 3.1:-68483638 | None:intergenic |
| CTTATTCTTTGACACTGATA+TGG | 0.261165 | 3.1:-68482838 | None:intergenic |
| CCACTTCAGGGATATCTCTT+TGG | 0.265174 | 3.1:+68482780 | MS.gene78975:CDS |
| CATATCAGTGTCAAAGAATA+AGG | 0.288207 | 3.1:+68482839 | MS.gene78975:CDS |
| AGGCAAAGGGCGAACGGAAT+TGG | 0.300171 | 3.1:+68483921 | MS.gene78975:CDS |
| AAGACTATGCAATGCAATAA+TGG | 0.301066 | 3.1:+68483993 | MS.gene78975:CDS |
| TGAAGATTCATCTGAGAATA+TGG | 0.319257 | 3.1:+68483662 | MS.gene78975:CDS |
| CTTAGTGTTGGAGCTCTAAA+AGG | 0.331716 | 3.1:+68483901 | MS.gene78975:CDS |
| TTCTCTCTGCGGTGCTTACA+TGG | 0.339766 | 3.1:-68482716 | None:intergenic |
| GAACTTTCCGGTGAAATATC+TGG | 0.341905 | 3.1:-68483455 | None:intergenic |
| AGACAGAAAACTGCATAATA+AGG | 0.354735 | 3.1:+68483073 | MS.gene78975:CDS |
| CTTAATTTGCAGCAGTTACT+TGG | 0.355697 | 3.1:+68481711 | MS.gene78975:intron |
| GGATGATACTGACAATAAAA+AGG | 0.366676 | 3.1:+68482950 | MS.gene78975:CDS |
| AAACTCCATTTGTCCACTTC+AGG | 0.368249 | 3.1:+68482767 | MS.gene78975:CDS |
| TTCCTAGCAATTGGAACTCT+TGG | 0.378228 | 3.1:+68482522 | MS.gene78975:CDS |
| AGCAATTGGAACTCTTGGTT+TGG | 0.393170 | 3.1:+68482527 | MS.gene78975:CDS |
| CACTATCTGAAACCGAACTT+TGG | 0.396952 | 3.1:+68482369 | MS.gene78975:CDS |
| GATCAGCTTCAGCTCATTCT+CGG | 0.397412 | 3.1:-68482628 | None:intergenic |
| TTCCCCGGCTTCCTAGCAAT+TGG | 0.406570 | 3.1:+68482513 | MS.gene78975:CDS |
| GGCAAAGGGCGAACGGAATT+GGG | 0.408082 | 3.1:+68483922 | MS.gene78975:CDS |
| GAGAAGCAAACAAGCAGATC+AGG | 0.413070 | 3.1:+68482908 | MS.gene78975:CDS |
| AAGTTGAATCAACAGAGGTC+TGG | 0.422480 | 3.1:-68483046 | None:intergenic |
| TGGAACTCTTGGTTTGGAAT+CGG | 0.430619 | 3.1:+68482533 | MS.gene78975:CDS |
| ACTATCTGAAACCGAACTTT+GGG | 0.435339 | 3.1:+68482370 | MS.gene78975:CDS |
| AGACTATGCAATGCAATAAT+GGG | 0.436065 | 3.1:+68483994 | MS.gene78975:CDS |
| GCAGATCAGGACAATCTTGT+TGG | 0.449301 | 3.1:+68482921 | MS.gene78975:CDS |
| AACTCCATTTGTCCACTTCA+GGG | 0.453747 | 3.1:+68482768 | MS.gene78975:CDS |
| GAAGAAGAAAAGAATGAATG+AGG | 0.455837 | 3.1:+68483512 | MS.gene78975:CDS |
| GCTCACCCAGTGTTGTTCTC+TGG | 0.456925 | 3.1:-68482878 | None:intergenic |
| AATGATGGTGTTAGTGGTGA+TGG | 0.457780 | 3.1:-68482558 | None:intergenic |
| GTTCCAATTGCTAGGAAGCC+GGG | 0.462497 | 3.1:-68482516 | None:intergenic |
| AGAAAATCTTTCGAAGCAGT+TGG | 0.467282 | 3.1:+68482438 | MS.gene78975:CDS |
| TGAGAATATAATAACTGAAA+AGG | 0.468108 | 3.1:+68482593 | MS.gene78975:CDS |
| AACAACAATGATGATTCATC+TGG | 0.470245 | 3.1:+68482684 | MS.gene78975:CDS |
| GAAAATCTTTCGAAGCAGTT+GGG | 0.473047 | 3.1:+68482439 | MS.gene78975:CDS |
| AGATGAATCATCATTGTTGT+TGG | 0.478539 | 3.1:-68482682 | None:intergenic |
| ATGGAAAATGATGGTGTTAG+TGG | 0.481586 | 3.1:-68482564 | None:intergenic |
| ATATCCCTGAAGTGGACAAA+TGG | 0.494244 | 3.1:-68482772 | None:intergenic |
| TCATATTAATTTGATGCTCG+TGG | 0.500786 | 3.1:-68483951 | None:intergenic |
| AGTTGAATCAACAGAGGTCT+GGG | 0.504381 | 3.1:-68483045 | None:intergenic |
| TTAAATTGCAGACTTAGTGT+TGG | 0.509625 | 3.1:+68483889 | MS.gene78975:intron |
| GGAAGAAGATAAGGAGGCAT+GGG | 0.511093 | 3.1:+68482482 | MS.gene78975:CDS |
| ATTTGCAGCAGTTACTTGGA+TGG | 0.516221 | 3.1:+68481715 | MS.gene78975:intron |
| AAGAAGAAAAGAATGAATGA+GGG | 0.517369 | 3.1:+68483513 | MS.gene78975:CDS |
| AGTAGACGAGGAAGAAGATA+AGG | 0.519096 | 3.1:+68482473 | MS.gene78975:CDS |
| AGTTCCAATTGCTAGGAAGC+CGG | 0.522924 | 3.1:-68482517 | None:intergenic |
| CAAAAGTAACAAAGTTGAAG+AGG | 0.524580 | 3.1:+68483545 | MS.gene78975:CDS |
| AGAGGTCTGGGAAGAAGCAT+GGG | 0.527489 | 3.1:-68483033 | None:intergenic |
| CAGAGGTCTGGGAAGAAGCA+TGG | 0.527966 | 3.1:-68483034 | None:intergenic |
| CAACTCCAAATTACCCTTGG+CGG | 0.530405 | 3.1:+68483633 | MS.gene78975:CDS |
| CACTGAACCTTTCAAAGACC+TGG | 0.535667 | 3.1:+68481764 | MS.gene78975:CDS |
| ATCTTCACTGCCACCGCCAA+GGG | 0.536347 | 3.1:-68483646 | None:intergenic |
| TATGAAAGATATGATCGTCA+TGG | 0.538059 | 3.1:+68483969 | MS.gene78975:CDS |
| TATTATATTCTCAACAGAGA+TGG | 0.542260 | 3.1:-68482583 | None:intergenic |
| GGACAATCTTGTTGGAGCAA+AGG | 0.550435 | 3.1:+68482929 | MS.gene78975:CDS |
| TCTTTCGAAGCAGTTGGGAG+TGG | 0.552062 | 3.1:+68482444 | MS.gene78975:CDS |
| CCAGCGACCAGGTCTTTGAA+AGG | 0.556891 | 3.1:-68481771 | None:intergenic |
| CCTTTCAAAGACCTGGTCGC+TGG | 0.558214 | 3.1:+68481771 | MS.gene78975:CDS |
| AATCTTCACTGCCACCGCCA+AGG | 0.558247 | 3.1:-68483647 | None:intergenic |
| TCGTACTTCTCTGCACATGT+TGG | 0.562643 | 3.1:-68483489 | None:intergenic |
| ACATCTATCTCACTCTGCAT+TGG | 0.563090 | 3.1:+68483736 | MS.gene78975:CDS |
| ATGAAAGATATGATCGTCAT+GGG | 0.567897 | 3.1:+68483970 | MS.gene78975:CDS |
| AGGAAGAAGATAAGGAGGCA+TGG | 0.571385 | 3.1:+68482481 | MS.gene78975:CDS |
| CTCCAAATTACCCTTGGCGG+TGG | 0.573132 | 3.1:+68483636 | MS.gene78975:CDS |
| CCAAAGAGATATCCCTGAAG+TGG | 0.575875 | 3.1:-68482780 | None:intergenic |
| AAAATAGCTTACCAGCGACC+AGG | 0.581021 | 3.1:-68481782 | None:intergenic |
| GAAGATAAGGAGGCATGGGG+TGG | 0.581558 | 3.1:+68482486 | MS.gene78975:CDS |
| AGATTCTCCAGATATTTCAC+CGG | 0.584446 | 3.1:+68483448 | MS.gene78975:intron |
| TCAACAGAGATGGAAAATGA+TGG | 0.585903 | 3.1:-68482573 | None:intergenic |
| AGGCAACTCCAAATTACCCT+TGG | 0.588508 | 3.1:+68483630 | MS.gene78975:CDS |
| TTGGAGCTCTAAAAGGCAAA+GGG | 0.588657 | 3.1:+68483908 | MS.gene78975:CDS |
| TCTAAAAGGCAAAGGGCGAA+CGG | 0.593553 | 3.1:+68483915 | MS.gene78975:CDS |
| GCAGTTGGAAAGGAAAACAT+AGG | 0.595191 | 3.1:+68483594 | MS.gene78975:CDS |
| CACAGCCAGAGAACAACACT+GGG | 0.596125 | 3.1:+68482873 | MS.gene78975:CDS |
| GTTGGAGCTCTAAAAGGCAA+AGG | 0.599355 | 3.1:+68483907 | MS.gene78975:CDS |
| ACACAGCCAGAGAACAACAC+TGG | 0.600693 | 3.1:+68482872 | MS.gene78975:CDS |
| AGACGAGGAAGAAGATAAGG+AGG | 0.605480 | 3.1:+68482476 | MS.gene78975:CDS |
| GATGGATGCATAGAAAACTT+CGG | 0.607420 | 3.1:+68481733 | MS.gene78975:CDS |
| CTGAAACCGAACTTTGGGAG+CGG | 0.608233 | 3.1:+68482375 | MS.gene78975:CDS |
| CATCTGAGAATATGGAGCAG+TGG | 0.617126 | 3.1:+68483670 | MS.gene78975:CDS |
| GCAGGCAACATCAGTTGATG+AGG | 0.617201 | 3.1:+68482332 | MS.gene78975:CDS |
| AACCAAGAGTTCCAATTGCT+AGG | 0.618323 | 3.1:-68482524 | None:intergenic |
| TTCCAATTGCTAGGAAGCCG+GGG | 0.628342 | 3.1:-68482515 | None:intergenic |
| GCAGTGGATCAAAACAGATG+TGG | 0.633740 | 3.1:+68483686 | MS.gene78975:CDS |
| ACATAGGACAGTGCAAGAAG+AGG | 0.639282 | 3.1:+68483610 | MS.gene78975:CDS |
| TGTTTCTGATAATTCAACTG+CGG | 0.657633 | 3.1:-68482805 | None:intergenic |
| GAGTGGTAGAGCAGTAGACG+AGG | 0.660218 | 3.1:+68482461 | MS.gene78975:CDS |
| TCCATGACTATTTCTCTCTG+CGG | 0.668096 | 3.1:-68482727 | None:intergenic |
| AAGAAAAGAATGAATGAGGG+AGG | 0.670784 | 3.1:+68483516 | MS.gene78975:CDS |
| TGCTGAAGTTGAATCAACAG+AGG | 0.671518 | 3.1:-68483051 | None:intergenic |
| ACCGCAGAGAGAAATAGTCA+TGG | 0.693609 | 3.1:+68482726 | MS.gene78975:CDS |
| GAGGTCTGGGAAGAAGCATG+GGG | 0.705384 | 3.1:-68483032 | None:intergenic |
| GAAGAAGATAAGGAGGCATG+GGG | 0.707091 | 3.1:+68482483 | MS.gene78975:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATATTATCTTCTTAA+TGG | - | chr3.1:68482118-68482137 | None:intergenic | 10.0% |
| !! | AACTATATTAATTAATCTGT+GGG | + | chr3.1:68483421-68483440 | MS.gene78975:intron | 15.0% |
| !! | ACAAATATTATAACTAACAA+AGG | - | chr3.1:68482299-68482318 | None:intergenic | 15.0% |
| !! | TAACTATATTAATTAATCTG+TGG | + | chr3.1:68483420-68483439 | MS.gene78975:intron | 15.0% |
| !! | TTCCAATTAGTATTTATTTA+AGG | + | chr3.1:68483382-68483401 | MS.gene78975:intron | 15.0% |
| !!! | ACTAAGCAAAATATATTTTA+TGG | - | chr3.1:68482190-68482209 | None:intergenic | 15.0% |
| !! | AATACTAATTGGAAACAAAA+AGG | - | chr3.1:68483376-68483395 | None:intergenic | 20.0% |
| !! | CTAATTCATTTCTATCAATT+TGG | - | chr3.1:68482145-68482164 | None:intergenic | 20.0% |
| !! | GACCTTAAATAAATACTAAT+TGG | - | chr3.1:68483387-68483406 | None:intergenic | 20.0% |
| !! | TAATTGTATAGAAAGTTGTT+GGG | + | chr3.1:68483274-68483293 | MS.gene78975:intron | 20.0% |
| !! | TGAGAATATAATAACTGAAA+AGG | + | chr3.1:68482593-68482612 | MS.gene78975:CDS | 20.0% |
| !! | TTGATTAATCTTTATAAGAG+TGG | + | chr3.1:68483229-68483248 | MS.gene78975:intron | 20.0% |
| !!! | ATTAATTCATTGTCTACTTT+TGG | - | chr3.1:68481962-68481981 | None:intergenic | 20.0% |
| ! | AAGAAGAAAAGAATGAATGA+GGG | + | chr3.1:68483513-68483532 | MS.gene78975:CDS | 25.0% |
| ! | AATATAGTTAGCTAAAGTCT+AGG | - | chr3.1:68483410-68483429 | None:intergenic | 25.0% |
| ! | AATTAATGCCAGATTTAACT+AGG | + | chr3.1:68481975-68481994 | MS.gene78975:intron | 25.0% |
| ! | AATTGTATAGAAAGTTGTTG+GGG | + | chr3.1:68483275-68483294 | MS.gene78975:intron | 25.0% |
| ! | ATATAGTTAGCTAAAGTCTA+GGG | - | chr3.1:68483409-68483428 | None:intergenic | 25.0% |
| ! | ATTAATCTTTATAAGAGTGG+TGG | + | chr3.1:68483232-68483251 | MS.gene78975:intron | 25.0% |
| ! | GAAAAAAGCTCAAGAAAAAA+AGG | + | chr3.1:68483006-68483025 | MS.gene78975:CDS | 25.0% |
| ! | GTAATTGTATAGAAAGTTGT+TGG | + | chr3.1:68483273-68483292 | MS.gene78975:intron | 25.0% |
| ! | TATTATATTCTCAACAGAGA+TGG | - | chr3.1:68482586-68482605 | None:intergenic | 25.0% |
| AACAACAATGATGATTCATC+TGG | + | chr3.1:68482684-68482703 | MS.gene78975:CDS | 30.0% | |
| AAGACTATGCAATGCAATAA+TGG | + | chr3.1:68483993-68484012 | MS.gene78975:CDS | 30.0% | |
| AAGAGAAAAATGATTCGCAT+CGG | + | chr3.1:68483183-68483202 | MS.gene78975:intron | 30.0% | |
| AATATTTGTGTTGCGTTTCA+GGG | + | chr3.1:68482310-68482329 | MS.gene78975:intron | 30.0% | |
| AGACAGAAAACTGCATAATA+AGG | + | chr3.1:68483073-68483092 | MS.gene78975:CDS | 30.0% | |
| AGACTATGCAATGCAATAAT+GGG | + | chr3.1:68483994-68484013 | MS.gene78975:CDS | 30.0% | |
| AGATGAATCATCATTGTTGT+TGG | - | chr3.1:68482685-68482704 | None:intergenic | 30.0% | |
| ATGAAAGATATGATCGTCAT+GGG | + | chr3.1:68483970-68483989 | MS.gene78975:CDS | 30.0% | |
| ATTGTATAGAAAGTTGTTGG+GGG | + | chr3.1:68483276-68483295 | MS.gene78975:intron | 30.0% | |
| CAAAAGTAACAAAGTTGAAG+AGG | + | chr3.1:68483545-68483564 | MS.gene78975:CDS | 30.0% | |
| CATATCAGTGTCAAAGAATA+AGG | + | chr3.1:68482839-68482858 | MS.gene78975:CDS | 30.0% | |
| CTTATTCTTTGACACTGATA+TGG | - | chr3.1:68482841-68482860 | None:intergenic | 30.0% | |
| GAAACAAAAAGGCAAATGAT+TGG | - | chr3.1:68483365-68483384 | None:intergenic | 30.0% | |
| GAAGAAGAAAAGAATGAATG+AGG | + | chr3.1:68483512-68483531 | MS.gene78975:CDS | 30.0% | |
| GGAGCAACAAATATATATGT+TGG | - | chr3.1:68482169-68482188 | None:intergenic | 30.0% | |
| GGATGATACTGACAATAAAA+AGG | + | chr3.1:68482950-68482969 | MS.gene78975:CDS | 30.0% | |
| TAATATTTGTGTTGCGTTTC+AGG | + | chr3.1:68482309-68482328 | MS.gene78975:intron | 30.0% | |
| TATGAAAGATATGATCGTCA+TGG | + | chr3.1:68483969-68483988 | MS.gene78975:CDS | 30.0% | |
| TGAAGATTCATCTGAGAATA+TGG | + | chr3.1:68483662-68483681 | MS.gene78975:CDS | 30.0% | |
| TGATACTGACAATAAAAAGG+AGG | + | chr3.1:68482953-68482972 | MS.gene78975:CDS | 30.0% | |
| TTAAATTGCAGACTTAGTGT+TGG | + | chr3.1:68483889-68483908 | MS.gene78975:intron | 30.0% | |
| ! | TATGTATGTTTGATAGCTGT+TGG | + | chr3.1:68481893-68481912 | MS.gene78975:intron | 30.0% |
| ! | TCATATTAATTTGATGCTCG+TGG | - | chr3.1:68483954-68483973 | None:intergenic | 30.0% |
| ! | TGTTTCTGATAATTCAACTG+CGG | - | chr3.1:68482808-68482827 | None:intergenic | 30.0% |
| !! | AATTCATTGTCTACTTTTGG+AGG | - | chr3.1:68481959-68481978 | None:intergenic | 30.0% |
| !!! | CAACTTTGTTACTTTTGTTG+TGG | - | chr3.1:68483542-68483561 | None:intergenic | 30.0% |
| AAGAAAAGAATGAATGAGGG+AGG | + | chr3.1:68483516-68483535 | MS.gene78975:CDS | 35.0% | |
| AGAAAATCTTTCGAAGCAGT+TGG | + | chr3.1:68482438-68482457 | MS.gene78975:CDS | 35.0% | |
| AGATTCTCCAGATATTTCAC+CGG | + | chr3.1:68483448-68483467 | MS.gene78975:intron | 35.0% | |
| AGGTAACTAAGATCAGTCAA+TGG | + | chr3.1:68481617-68481636 | MS.gene78975:intron | 35.0% | |
| CTAACAAAGGATGTCTATGA+CGG | - | chr3.1:68482286-68482305 | None:intergenic | 35.0% | |
| GAAAATCTTTCGAAGCAGTT+GGG | + | chr3.1:68482439-68482458 | MS.gene78975:CDS | 35.0% | |
| GATGGATGCATAGAAAACTT+CGG | + | chr3.1:68481733-68481752 | MS.gene78975:CDS | 35.0% | |
| TACTGACAATAAAAAGGAGG+AGG | + | chr3.1:68482956-68482975 | MS.gene78975:CDS | 35.0% | |
| TAGACATGCCTAGTTAAATC+TGG | - | chr3.1:68481986-68482005 | None:intergenic | 35.0% | |
| TATATGCAGTTGAAGCAGTA+AGG | - | chr3.1:68481665-68481684 | None:intergenic | 35.0% | |
| TCAACAGAGATGGAAAATGA+TGG | - | chr3.1:68482576-68482595 | None:intergenic | 35.0% | |
| TTTACAGTGGGCAATACTTA+TGG | - | chr3.1:68482079-68482098 | None:intergenic | 35.0% | |
| ! | ACTATCTGAAACCGAACTTT+GGG | + | chr3.1:68482370-68482389 | MS.gene78975:CDS | 35.0% |
| ! | ATGGAAAATGATGGTGTTAG+TGG | - | chr3.1:68482567-68482586 | None:intergenic | 35.0% |
| ! | TCTAGAATGATCAGAAGTCT+TGG | + | chr3.1:68482209-68482228 | MS.gene78975:intron | 35.0% |
| ! | TTTGTGAGCTAGTTTACAGT+GGG | - | chr3.1:68482091-68482110 | None:intergenic | 35.0% |
| !! | CTTAATTTGCAGCAGTTACT+TGG | + | chr3.1:68481711-68481730 | MS.gene78975:intron | 35.0% |
| !!! | CTTTTTTCTCATGAGATGCA+TGG | - | chr3.1:68482994-68483013 | None:intergenic | 35.0% |
| AAACTCCATTTGTCCACTTC+AGG | + | chr3.1:68482767-68482786 | MS.gene78975:CDS | 40.0% | |
| AACCAAGAGTTCCAATTGCT+AGG | - | chr3.1:68482527-68482546 | None:intergenic | 40.0% | |
| AACTCCATTTGTCCACTTCA+GGG | + | chr3.1:68482768-68482787 | MS.gene78975:CDS | 40.0% | |
| AAGTTGAATCAACAGAGGTC+TGG | - | chr3.1:68483049-68483068 | None:intergenic | 40.0% | |
| ACATCTATCTCACTCTGCAT+TGG | + | chr3.1:68483736-68483755 | MS.gene78975:CDS | 40.0% | |
| AGCAATTGGAACTCTTGGTT+TGG | + | chr3.1:68482527-68482546 | MS.gene78975:CDS | 40.0% | |
| AGTAGACGAGGAAGAAGATA+AGG | + | chr3.1:68482473-68482492 | MS.gene78975:CDS | 40.0% | |
| AGTTGAATCAACAGAGGTCT+GGG | - | chr3.1:68483048-68483067 | None:intergenic | 40.0% | |
| ATACAGCCAAAAAGAGCAGT+TGG | + | chr3.1:68483579-68483598 | MS.gene78975:CDS | 40.0% | |
| ATATCCCTGAAGTGGACAAA+TGG | - | chr3.1:68482775-68482794 | None:intergenic | 40.0% | |
| ATTTGCAGCAGTTACTTGGA+TGG | + | chr3.1:68481715-68481734 | MS.gene78975:intron | 40.0% | |
| GAAATGAAAACTCAAGCGCA+TGG | + | chr3.1:68483846-68483865 | MS.gene78975:intron | 40.0% | |
| GAACTTTCCGGTGAAATATC+TGG | - | chr3.1:68483458-68483477 | None:intergenic | 40.0% | |
| GAGATGCATGGCAGATTTAT+TGG | - | chr3.1:68482982-68483001 | None:intergenic | 40.0% | |
| GCAGTTGGAAAGGAAAACAT+AGG | + | chr3.1:68483594-68483613 | MS.gene78975:CDS | 40.0% | |
| TCCAAGATTCATGTGCAACT+TGG | + | chr3.1:68483159-68483178 | MS.gene78975:intron | 40.0% | |
| TGCTGAAGTTGAATCAACAG+AGG | - | chr3.1:68483054-68483073 | None:intergenic | 40.0% | |
| TTCCTAGCAATTGGAACTCT+TGG | + | chr3.1:68482522-68482541 | MS.gene78975:CDS | 40.0% | |
| ! | AATGATGGTGTTAGTGGTGA+TGG | - | chr3.1:68482561-68482580 | None:intergenic | 40.0% |
| ! | CACTATCTGAAACCGAACTT+TGG | + | chr3.1:68482369-68482388 | MS.gene78975:CDS | 40.0% |
| ! | CTGCACATGTTGGATTTTCA+GGG | - | chr3.1:68483482-68483501 | None:intergenic | 40.0% |
| ! | GTTTGTGAGCTAGTTTACAG+TGG | - | chr3.1:68482092-68482111 | None:intergenic | 40.0% |
| ! | TATTTTCCGCTCCCAAAGTT+CGG | - | chr3.1:68482384-68482403 | None:intergenic | 40.0% |
| ! | TCCATGACTATTTCTCTCTG+CGG | - | chr3.1:68482730-68482749 | None:intergenic | 40.0% |
| ! | TCCTTTCCAACTGCTCTTTT+TGG | - | chr3.1:68483588-68483607 | None:intergenic | 40.0% |
| ! | TCTGCACATGTTGGATTTTC+AGG | - | chr3.1:68483483-68483502 | None:intergenic | 40.0% |
| !! | CTTAGTGTTGGAGCTCTAAA+AGG | + | chr3.1:68483901-68483920 | MS.gene78975:CDS | 40.0% |
| !! | GATTTTCAGGGTGAACTTTC+CGG | - | chr3.1:68483470-68483489 | None:intergenic | 40.0% |
| !! | TGGAACTCTTGGTTTGGAAT+CGG | + | chr3.1:68482533-68482552 | MS.gene78975:CDS | 40.0% |
| !! | TTGGAGCTCTAAAAGGCAAA+GGG | + | chr3.1:68483908-68483927 | MS.gene78975:CDS | 40.0% |
| AAAATAGCTTACCAGCGACC+AGG | - | chr3.1:68481785-68481804 | None:intergenic | 45.0% | |
| ACATAGGACAGTGCAAGAAG+AGG | + | chr3.1:68483610-68483629 | MS.gene78975:CDS | 45.0% | |
| ACCGCAGAGAGAAATAGTCA+TGG | + | chr3.1:68482726-68482745 | MS.gene78975:CDS | 45.0% | |
| AGACGAGGAAGAAGATAAGG+AGG | + | chr3.1:68482476-68482495 | MS.gene78975:CDS | 45.0% | |
| AGGAAGAAGATAAGGAGGCA+TGG | + | chr3.1:68482481-68482500 | MS.gene78975:CDS | 45.0% | |
| AGGCAACTCCAAATTACCCT+TGG | + | chr3.1:68483630-68483649 | MS.gene78975:CDS | 45.0% | |
| AGTTCCAATTGCTAGGAAGC+CGG | - | chr3.1:68482520-68482539 | None:intergenic | 45.0% | |
| ATGGACGGTGATATATGCGT+TGG | - | chr3.1:68482060-68482079 | None:intergenic | 45.0% | |
| CAAAGGATGTCTATGACGGT+TGG | - | chr3.1:68482282-68482301 | None:intergenic | 45.0% | |
| CAACTCCAAATTACCCTTGG+CGG | + | chr3.1:68483633-68483652 | MS.gene78975:CDS | 45.0% | |
| CACTGAACCTTTCAAAGACC+TGG | + | chr3.1:68481764-68481783 | MS.gene78975:CDS | 45.0% | |
| CAGTGGGCAATACTTATGGA+CGG | - | chr3.1:68482075-68482094 | None:intergenic | 45.0% | |
| CATCTGAGAATATGGAGCAG+TGG | + | chr3.1:68483670-68483689 | MS.gene78975:CDS | 45.0% | |
| CCAAAGAGATATCCCTGAAG+TGG | - | chr3.1:68482783-68482802 | None:intergenic | 45.0% | |
| CCACTTCAGGGATATCTCTT+TGG | + | chr3.1:68482780-68482799 | MS.gene78975:CDS | 45.0% | |
| CCATGAACTCAAGTGGCATT+CGG | - | chr3.1:68482255-68482274 | None:intergenic | 45.0% | |
| GAGAAGCAAACAAGCAGATC+AGG | + | chr3.1:68482908-68482927 | MS.gene78975:CDS | 45.0% | |
| GATCAGCTTCAGCTCATTCT+CGG | - | chr3.1:68482631-68482650 | None:intergenic | 45.0% | |
| GCAGATCAGGACAATCTTGT+TGG | + | chr3.1:68482921-68482940 | MS.gene78975:CDS | 45.0% | |
| GCAGTGGATCAAAACAGATG+TGG | + | chr3.1:68483686-68483705 | MS.gene78975:CDS | 45.0% | |
| GCCAAAAAGAGCAGTTGGAA+AGG | + | chr3.1:68483584-68483603 | MS.gene78975:CDS | 45.0% | |
| GCCAAGTTGCACATGAATCT+TGG | - | chr3.1:68483163-68483182 | None:intergenic | 45.0% | |
| GGACAATCTTGTTGGAGCAA+AGG | + | chr3.1:68482929-68482948 | MS.gene78975:CDS | 45.0% | |
| TCGTACTTCTCTGCACATGT+TGG | - | chr3.1:68483492-68483511 | None:intergenic | 45.0% | |
| TCTAAAAGGCAAAGGGCGAA+CGG | + | chr3.1:68483915-68483934 | MS.gene78975:CDS | 45.0% | |
| ! | ATGCCACTTGAGTTCATGGT+TGG | + | chr3.1:68482256-68482275 | MS.gene78975:intron | 45.0% |
| ! | CAAGCGCATGGCTAAGATTT+TGG | + | chr3.1:68483858-68483877 | MS.gene78975:intron | 45.0% |
| ! | GAAGAAGATAAGGAGGCATG+GGG | + | chr3.1:68482483-68482502 | MS.gene78975:CDS | 45.0% |
| ! | GGAAGAAGATAAGGAGGCAT+GGG | + | chr3.1:68482482-68482501 | MS.gene78975:CDS | 45.0% |
| !! | GTTGGAGCTCTAAAAGGCAA+AGG | + | chr3.1:68483907-68483926 | MS.gene78975:CDS | 45.0% |
| ACACAGCCAGAGAACAACAC+TGG | + | chr3.1:68482872-68482891 | MS.gene78975:CDS | 50.0% | |
| ATCAGAAGTCTTGGCGAGTG+AGG | + | chr3.1:68482218-68482237 | MS.gene78975:intron | 50.0% | |
| CACAGCCAGAGAACAACACT+GGG | + | chr3.1:68482873-68482892 | MS.gene78975:CDS | 50.0% | |
| GTTCCAATTGCTAGGAAGCC+GGG | - | chr3.1:68482519-68482538 | None:intergenic | 50.0% | |
| TCAGAAGTCTTGGCGAGTGA+GGG | + | chr3.1:68482219-68482238 | MS.gene78975:intron | 50.0% | |
| TCTTTCGAAGCAGTTGGGAG+TGG | + | chr3.1:68482444-68482463 | MS.gene78975:CDS | 50.0% | |
| TGGCCAACCATGAACTCAAG+TGG | - | chr3.1:68482262-68482281 | None:intergenic | 50.0% | |
| TTCCAATTGCTAGGAAGCCG+GGG | - | chr3.1:68482518-68482537 | None:intergenic | 50.0% | |
| TTCTCTCTGCGGTGCTTACA+TGG | - | chr3.1:68482719-68482738 | None:intergenic | 50.0% | |
| TTTGTGTTGCGTTTCAGGGC+AGG | + | chr3.1:68482314-68482333 | MS.gene78975:intron | 50.0% | |
| ! | AGAGGTCTGGGAAGAAGCAT+GGG | - | chr3.1:68483036-68483055 | None:intergenic | 50.0% |
| ! | CCGAATGCCACTTGAGTTCA+TGG | + | chr3.1:68482252-68482271 | MS.gene78975:intron | 50.0% |
| ! | CTGAAACCGAACTTTGGGAG+CGG | + | chr3.1:68482375-68482394 | MS.gene78975:CDS | 50.0% |
| ! | GCAGGCAACATCAGTTGATG+AGG | + | chr3.1:68482332-68482351 | MS.gene78975:CDS | 50.0% |
| AATCTTCACTGCCACCGCCA+AGG | - | chr3.1:68483650-68483669 | None:intergenic | 55.0% | |
| AGGCAAAGGGCGAACGGAAT+TGG | + | chr3.1:68483921-68483940 | MS.gene78975:CDS | 55.0% | |
| ATCTTCACTGCCACCGCCAA+GGG | - | chr3.1:68483649-68483668 | None:intergenic | 55.0% | |
| CAGAGGTCTGGGAAGAAGCA+TGG | - | chr3.1:68483037-68483056 | None:intergenic | 55.0% | |
| CCAGCGACCAGGTCTTTGAA+AGG | - | chr3.1:68481774-68481793 | None:intergenic | 55.0% | |
| CCTTTCAAAGACCTGGTCGC+TGG | + | chr3.1:68481771-68481790 | MS.gene78975:CDS | 55.0% | |
| CTCCAAATTACCCTTGGCGG+TGG | + | chr3.1:68483636-68483655 | MS.gene78975:CDS | 55.0% | |
| GAGTGGTAGAGCAGTAGACG+AGG | + | chr3.1:68482461-68482480 | MS.gene78975:CDS | 55.0% | |
| GGCAAAGGGCGAACGGAATT+GGG | + | chr3.1:68483922-68483941 | MS.gene78975:CDS | 55.0% | |
| TGCCACCGCCAAGGGTAATT+TGG | - | chr3.1:68483641-68483660 | None:intergenic | 55.0% | |
| TTCCCCGGCTTCCTAGCAAT+TGG | + | chr3.1:68482513-68482532 | MS.gene78975:CDS | 55.0% | |
| ! | GAAGATAAGGAGGCATGGGG+TGG | + | chr3.1:68482486-68482505 | MS.gene78975:CDS | 55.0% |
| ! | GAGGTCTGGGAAGAAGCATG+GGG | - | chr3.1:68483035-68483054 | None:intergenic | 55.0% |
| ! | GCATGGGGTGGTATTTTCCC+CGG | + | chr3.1:68482498-68482517 | MS.gene78975:CDS | 55.0% |
| ! | GCTCACCCAGTGTTGTTCTC+TGG | - | chr3.1:68482881-68482900 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 68481613 | 68484032 | 68481613 | ID=MS.gene78975 |
| chr3.1 | mRNA | 68481613 | 68484032 | 68481613 | ID=MS.gene78975.t1;Parent=MS.gene78975 |
| chr3.1 | exon | 68481613 | 68481618 | 68481613 | ID=MS.gene78975.t1.exon1;Parent=MS.gene78975.t1 |
| chr3.1 | CDS | 68481613 | 68481618 | 68481613 | ID=cds.MS.gene78975.t1;Parent=MS.gene78975.t1 |
| chr3.1 | exon | 68481726 | 68481792 | 68481726 | ID=MS.gene78975.t1.exon2;Parent=MS.gene78975.t1 |
| chr3.1 | CDS | 68481726 | 68481792 | 68481726 | ID=cds.MS.gene78975.t1;Parent=MS.gene78975.t1 |
| chr3.1 | exon | 68482331 | 68483094 | 68482331 | ID=MS.gene78975.t1.exon3;Parent=MS.gene78975.t1 |
| chr3.1 | CDS | 68482331 | 68483094 | 68482331 | ID=cds.MS.gene78975.t1;Parent=MS.gene78975.t1 |
| chr3.1 | exon | 68483450 | 68483775 | 68483450 | ID=MS.gene78975.t1.exon4;Parent=MS.gene78975.t1 |
| chr3.1 | CDS | 68483450 | 68483775 | 68483450 | ID=cds.MS.gene78975.t1;Parent=MS.gene78975.t1 |
| chr3.1 | exon | 68483900 | 68484032 | 68483900 | ID=MS.gene78975.t1.exon5;Parent=MS.gene78975.t1 |
| chr3.1 | CDS | 68483900 | 68484032 | 68483900 | ID=cds.MS.gene78975.t1;Parent=MS.gene78975.t1 |
| Gene Sequence |
| Protein sequence |
