Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79096.t1 | AES72175.1 | 81.1 | 344 | 22 | 2 | 1 | 320 | 121 | 445 | 1.00E-156 | 562.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79096.t1 | P61871 | 38.5 | 91 | 51 | 2 | 126 | 216 | 249 | 334 | 9.1e-08 | 59.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79096.t1 | G7J382 | 81.1 | 344 | 22 | 2 | 1 | 320 | 121 | 445 | 7.6e-157 | 562.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05435 | MS.gene79096 | 0.808154 | 3.56E-50 | -1.69E-46 |
| MS.gene058515 | MS.gene79096 | 0.809421 | 1.91E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79096.t1 | MTR_3g086880 | 81.105 | 344 | 22 | 2 | 1 | 320 | 121 | 445 | 0.0 | 559 |
| MS.gene79096.t1 | MTR_5g017260 | 55.000 | 340 | 127 | 3 | 1 | 316 | 125 | 462 | 6.85e-127 | 371 |
| MS.gene79096.t1 | MTR_1g019270 | 50.588 | 340 | 142 | 4 | 1 | 316 | 122 | 459 | 1.08e-110 | 330 |
| MS.gene79096.t1 | MTR_7g117505 | 39.714 | 350 | 158 | 5 | 22 | 321 | 150 | 496 | 1.20e-78 | 248 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79096.t1 | AT5G67050 | 50.435 | 345 | 138 | 5 | 1 | 313 | 119 | 462 | 3.31e-113 | 336 |
| MS.gene79096.t1 | AT5G42930 | 46.647 | 343 | 154 | 3 | 1 | 316 | 121 | 461 | 5.38e-107 | 320 |
| MS.gene79096.t1 | AT1G56630 | 43.626 | 353 | 159 | 4 | 1 | 315 | 121 | 471 | 1.72e-95 | 291 |
| MS.gene79096.t1 | AT1G45201 | 44.575 | 341 | 158 | 5 | 2 | 316 | 127 | 462 | 1.17e-93 | 286 |
| MS.gene79096.t1 | AT1G45201 | 44.575 | 341 | 158 | 5 | 2 | 316 | 152 | 487 | 2.48e-93 | 286 |
| MS.gene79096.t1 | AT3G14360 | 40.361 | 332 | 159 | 4 | 22 | 314 | 177 | 508 | 2.59e-78 | 248 |
| MS.gene79096.t1 | AT5G42930 | 44.737 | 266 | 118 | 3 | 1 | 239 | 121 | 384 | 5.00e-73 | 231 |
| MS.gene79096.t1 | AT1G45201 | 43.939 | 264 | 117 | 5 | 2 | 239 | 127 | 385 | 1.25e-65 | 211 |
Find 65 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCATGGTTGGAGCTTCC+TGG | 0.307084 | 3.2:-74167604 | MS.gene79096:intron |
| AACACAATGTCCTTTATATC+AGG | 0.310096 | 3.2:+74167187 | None:intergenic |
| GCATGAGGAGTCATTTCTTT+TGG | 0.319373 | 3.2:-74167353 | MS.gene79096:CDS |
| CTTCAAGGGGTTTACACATT+TGG | 0.328267 | 3.2:-74167325 | MS.gene79096:CDS |
| TGATTTGTTTCAATTTGTTT+AGG | 0.333018 | 3.2:+74167517 | None:intergenic |
| GAGAAGAATTTGAAAGATAA+TGG | 0.384043 | 3.2:-74167262 | MS.gene79096:CDS |
| ACATTGTGTTTAAGCACTTT+GGG | 0.384637 | 3.2:-74167174 | MS.gene79096:CDS |
| GGTAAGGTTAACATAATCTT+GGG | 0.389871 | 3.2:+74166814 | None:intergenic |
| TTAAGAGCATTTCGGCTTGT+TGG | 0.392156 | 3.2:-74166869 | MS.gene79096:CDS |
| CTTGTTGGCTTACTAGTGCC+TGG | 0.403502 | 3.2:-74166854 | MS.gene79096:CDS |
| TAGGTTTCCTCCTGATATAA+AGG | 0.410316 | 3.2:-74167197 | MS.gene79096:CDS |
| TGGTTGGAGCTTCCTGGACT+TGG | 0.410975 | 3.2:-74167598 | MS.gene79096:intron |
| TAATGCTGCTTTGTTTATGA+TGG | 0.415323 | 3.2:-74170846 | MS.gene79096:CDS |
| GACATTGTGTTTAAGCACTT+TGG | 0.419779 | 3.2:-74167175 | MS.gene79096:CDS |
| GCTGGTTTCATGAAAGCCTT+AGG | 0.419839 | 3.2:-74167565 | MS.gene79096:CDS |
| TTGTGGCATGCGGTGACTAC+TGG | 0.426475 | 3.2:-74170384 | MS.gene79096:CDS |
| TCGAGAAAATTGATCCCAAC+CGG | 0.427082 | 3.2:+74166792 | None:intergenic |
| TAATCTTGGGGTAAGTGATT+AGG | 0.433362 | 3.2:+74166827 | None:intergenic |
| TATGTTAACCTTACCCGGTT+GGG | 0.444416 | 3.2:-74166806 | MS.gene79096:CDS |
| GGGTAAGGTTAACATAATCT+TGG | 0.451197 | 3.2:+74166813 | None:intergenic |
| AAAGCAAAGTTTATATTGAC+TGG | 0.451591 | 3.2:-74167427 | MS.gene79096:CDS |
| GTTGCTTCTTTGTAAACCTA+AGG | 0.452412 | 3.2:+74167549 | None:intergenic |
| TGAAACTTGGCAGATTATCA+AGG | 0.466744 | 3.2:-74167745 | MS.gene79096:intron |
| AGTAGTAAGCTTCAAGTGTA+TGG | 0.481831 | 3.2:+74167491 | None:intergenic |
| AAATTGATCCCAACCGGGTA+AGG | 0.484292 | 3.2:+74166798 | None:intergenic |
| ATAGCTATGATATTATTCCT+AGG | 0.487380 | 3.2:-74167216 | MS.gene79096:CDS |
| TTTACTAAAGAAACATTTGA+AGG | 0.493912 | 3.2:-74167458 | MS.gene79096:CDS |
| AATATGTAATCTCCAACTCT+TGG | 0.498499 | 3.2:+74167298 | None:intergenic |
| TATGGACAAGCGAGTGGAGT+TGG | 0.502914 | 3.2:-74170900 | MS.gene79096:CDS |
| TTACATATTTGCTCAATACA+TGG | 0.503818 | 3.2:-74167284 | MS.gene79096:CDS |
| ATATTGACTGGTCACAGTCT+AGG | 0.505731 | 3.2:-74167415 | MS.gene79096:CDS |
| ACATTTGGTCAACCAAGAGT+TGG | 0.509933 | 3.2:-74167310 | MS.gene79096:CDS |
| GCTCATAAGGAGCTTCACTA+TGG | 0.518248 | 3.2:-74166930 | MS.gene79096:CDS |
| ACCCATCCCTCTTGATACTC+AGG | 0.520693 | 3.2:+74166893 | None:intergenic |
| TTCACTATGGTGTCTAGGTA+TGG | 0.526854 | 3.2:-74166917 | MS.gene79096:CDS |
| GGGACATAGTTGAAAATCGT+TGG | 0.527074 | 3.2:-74170787 | MS.gene79096:CDS |
| GGAGCTTCACTATGGTGTCT+AGG | 0.529109 | 3.2:-74166922 | MS.gene79096:CDS |
| TACAAAGAAGCAACATGGGT+TGG | 0.532370 | 3.2:-74167540 | MS.gene79096:CDS |
| GACCTGAGTATCAAGAGGGA+TGG | 0.541599 | 3.2:-74166895 | MS.gene79096:CDS |
| AAGATTATGTTAACCTTACC+CGG | 0.543967 | 3.2:-74166811 | MS.gene79096:CDS |
| TTATGTTAACCTTACCCGGT+TGG | 0.555126 | 3.2:-74166807 | MS.gene79096:CDS |
| CATAGTTGAAAATCGTTGGA+AGG | 0.564748 | 3.2:-74170783 | MS.gene79096:intron |
| GGTAAGTGATTAGGTACTCC+AGG | 0.565069 | 3.2:+74166836 | None:intergenic |
| TTACTAAAGAAACATTTGAA+GGG | 0.565367 | 3.2:-74167457 | MS.gene79096:CDS |
| GAGTTGGACAAAAGCATCAA+AGG | 0.572010 | 3.2:-74170884 | MS.gene79096:CDS |
| TCATGCAACATCAATATCGC+AGG | 0.573993 | 3.2:+74167370 | None:intergenic |
| ACCTGAGTATCAAGAGGGAT+GGG | 0.576968 | 3.2:-74166894 | MS.gene79096:CDS |
| TCCTCAAAAGGTTACTATGT+AGG | 0.583386 | 3.2:+74167669 | None:intergenic |
| AGGTTTACAAAGAAGCAACA+TGG | 0.584733 | 3.2:-74167545 | MS.gene79096:CDS |
| TGATAGAAACTATAATGGCA+AGG | 0.584877 | 3.2:-74167137 | MS.gene79096:intron |
| TTTATATCAGGAGGAAACCT+AGG | 0.585879 | 3.2:+74167199 | None:intergenic |
| ACAAAGCAGCATTATACTTG+AGG | 0.592763 | 3.2:+74170855 | None:intergenic |
| CGAGAAAATTGATCCCAACC+GGG | 0.608715 | 3.2:+74166793 | None:intergenic |
| GGTTTACAAAGAAGCAACAT+GGG | 0.611206 | 3.2:-74167544 | MS.gene79096:CDS |
| TGGTCATATGGACAAGCGAG+TGG | 0.611878 | 3.2:-74170906 | None:intergenic |
| GTATGGACCTGAGTATCAAG+AGG | 0.628629 | 3.2:-74166900 | MS.gene79096:CDS |
| ACAATGTCCTTTATATCAGG+AGG | 0.632118 | 3.2:+74167190 | None:intergenic |
| TTGACTGGTCACAGTCTAGG+TGG | 0.654349 | 3.2:-74167412 | MS.gene79096:CDS |
| AGGTTACTATGTAGGTGTCG+TGG | 0.656528 | 3.2:+74167677 | None:intergenic |
| TCTTGCATAGATGGAAGTTG+TGG | 0.658461 | 3.2:-74170401 | MS.gene79096:intron |
| TGCGATATTGATGTTGCATG+AGG | 0.662471 | 3.2:-74167368 | MS.gene79096:CDS |
| GCATGCGGTGACTACTGGAA+TGG | 0.666193 | 3.2:-74170379 | MS.gene79096:intron |
| TATGGACCTGAGTATCAAGA+GGG | 0.673621 | 3.2:-74166899 | MS.gene79096:CDS |
| GTAAGGTTAACATAATCTTG+GGG | 0.683904 | 3.2:+74166815 | None:intergenic |
| TAGATGGAAGTTGTGGCATG+CGG | 0.719132 | 3.2:-74170394 | MS.gene79096:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATAAAATTATTTTT+TGG | - | chr3.2:74168901-74168920 | MS.gene79096:intron | 0.0% |
| !! | ATAAAAATTAAATTTGATCA+TGG | + | chr3.2:74167780-74167799 | None:intergenic | 10.0% |
| !! | ATTGATACATAAAAAATTAT+GGG | + | chr3.2:74169304-74169323 | None:intergenic | 10.0% |
| !! | TTATAATTTACCTATAAAAT+TGG | - | chr3.2:74167203-74167222 | MS.gene79096:CDS | 10.0% |
| !!! | AATCAAATTATTTGTTAATT+TGG | + | chr3.2:74168747-74168766 | None:intergenic | 10.0% |
| !!! | AATTTATTTTAGTTTAAATG+CGG | - | chr3.2:74169731-74169750 | MS.gene79096:intron | 10.0% |
| !!! | ACAAAATAAAAGTTTTTTTT+TGG | + | chr3.2:74168876-74168895 | None:intergenic | 10.0% |
| !! | AAAAATAAATTGTGCTAAAT+AGG | - | chr3.2:74169412-74169431 | MS.gene79096:intron | 15.0% |
| !! | AATATTTGTATTATGAATAC+AGG | - | chr3.2:74167428-74167447 | MS.gene79096:CDS | 15.0% |
| !! | ATAGATATTAGAAAATATAC+GGG | + | chr3.2:74169550-74169569 | None:intergenic | 15.0% |
| !! | CATTGATACATAAAAAATTA+TGG | + | chr3.2:74169305-74169324 | None:intergenic | 15.0% |
| !! | GATAGATATTAGAAAATATA+CGG | + | chr3.2:74169551-74169570 | None:intergenic | 15.0% |
| !! | GGTAAATCTAAAAAAAAAAA+GGG | + | chr3.2:74169170-74169189 | None:intergenic | 15.0% |
| !! | TGGTAAATCTAAAAAAAAAA+AGG | + | chr3.2:74169171-74169190 | None:intergenic | 15.0% |
| !!! | ATTTATTTTAGTTTAAATGC+GGG | - | chr3.2:74169732-74169751 | MS.gene79096:intron | 15.0% |
| !!! | CTTGTTTGTATTTTTTTTTT+TGG | + | chr3.2:74167498-74167517 | None:intergenic | 15.0% |
| !!! | TTGCATTTTTCTTTTATTAA+GGG | + | chr3.2:74168490-74168509 | None:intergenic | 15.0% |
| !!! | TTTATATCAAACTCTAAAAA+AGG | + | chr3.2:74168782-74168801 | None:intergenic | 15.0% |
| !!! | TTTGCATTTTTCTTTTATTA+AGG | + | chr3.2:74168491-74168510 | None:intergenic | 15.0% |
| !!! | TTTTTTGATAGAAACTATAA+TGG | - | chr3.2:74170538-74170557 | MS.gene79096:intron | 15.0% |
| !! | AAATACAAACAAGAATGATA+TGG | - | chr3.2:74167505-74167524 | MS.gene79096:CDS | 20.0% |
| !! | AATACAAACAAGAATGATAT+GGG | - | chr3.2:74167506-74167525 | MS.gene79096:CDS | 20.0% |
| !! | AGATTTACAAAGAAAGATAT+TGG | - | chr3.2:74168153-74168172 | MS.gene79096:intron | 20.0% |
| !! | ATTAATTCATAGTTGACAAA+AGG | - | chr3.2:74167179-74167198 | MS.gene79096:CDS | 20.0% |
| !! | ATTGATACCTAAAAAAACAT+GGG | + | chr3.2:74169209-74169228 | None:intergenic | 20.0% |
| !! | ATTTGAACAATCATTTGATT+GGG | - | chr3.2:74168112-74168131 | MS.gene79096:intron | 20.0% |
| !! | TAAATACACTTGAGTTAAAA+TGG | + | chr3.2:74170615-74170634 | None:intergenic | 20.0% |
| !! | TATTTGAACAATCATTTGAT+TGG | - | chr3.2:74168111-74168130 | MS.gene79096:intron | 20.0% |
| !! | TTACTAAAGAAACATTTGAA+GGG | - | chr3.2:74170223-74170242 | MS.gene79096:intron | 20.0% |
| !! | TTTACTAAAGAAACATTTGA+AGG | - | chr3.2:74170222-74170241 | MS.gene79096:intron | 20.0% |
| !!! | AAAGAAAAGTAGTTTTTGTT+TGG | + | chr3.2:74170691-74170710 | None:intergenic | 20.0% |
| !!! | AAGGGATAAATATTTCTAAT+TGG | + | chr3.2:74169459-74169478 | None:intergenic | 20.0% |
| !!! | ATAATAGTAAGGTTGATTAT+TGG | - | chr3.2:74169904-74169923 | MS.gene79096:intron | 20.0% |
| !!! | GTCTTTTATAAAAGTGTAAA+AGG | + | chr3.2:74167949-74167968 | None:intergenic | 20.0% |
| !!! | TGATTTGTTTCAATTTGTTT+AGG | + | chr3.2:74170166-74170185 | None:intergenic | 20.0% |
| !!! | TTTTTTCGTTAGCATATTAT+TGG | - | chr3.2:74167018-74167037 | MS.gene79096:intron | 20.0% |
| !!! | TTTTTTTTTAGAGAACAACA+TGG | + | chr3.2:74167890-74167909 | None:intergenic | 20.0% |
| ! | AAAGCAAAGTTTATATTGAC+TGG | - | chr3.2:74170253-74170272 | MS.gene79096:intron | 25.0% |
| ! | AATCATACAAAAAAAATCGC+GGG | + | chr3.2:74169514-74169533 | None:intergenic | 25.0% |
| ! | AATGCAAACACAACAATAAT+AGG | - | chr3.2:74168281-74168300 | MS.gene79096:intron | 25.0% |
| ! | AGCTAAAAGTAATTGACAAA+AGG | - | chr3.2:74167231-74167250 | MS.gene79096:CDS | 25.0% |
| ! | ATAGCTATGATATTATTCCT+AGG | - | chr3.2:74170464-74170483 | MS.gene79096:intron | 25.0% |
| ! | ATGAATTCTCTTCTTGAAAT+CGG | - | chr3.2:74167079-74167098 | MS.gene79096:intron | 25.0% |
| ! | ATTAAATTTGATCATGGTTC+TGG | + | chr3.2:74167774-74167793 | None:intergenic | 25.0% |
| ! | ATTTCCATAGTGTATTCAAA+GGG | - | chr3.2:74169608-74169627 | MS.gene79096:intron | 25.0% |
| ! | CATTGATACCTAAAAAAACA+TGG | + | chr3.2:74169210-74169229 | None:intergenic | 25.0% |
| ! | GAATCATACAAAAAAAATCG+CGG | + | chr3.2:74169515-74169534 | None:intergenic | 25.0% |
| ! | GAGAAGAATTTGAAAGATAA+TGG | - | chr3.2:74170418-74170437 | MS.gene79096:intron | 25.0% |
| ! | GTGATTGATACATAGATAAA+AGG | + | chr3.2:74169137-74169156 | None:intergenic | 25.0% |
| ! | GTTTATAAATGGGGATAATT+CGG | + | chr3.2:74167752-74167771 | None:intergenic | 25.0% |
| ! | TAAGTTGTGGAAATACATTA+GGG | - | chr3.2:74169633-74169652 | MS.gene79096:intron | 25.0% |
| ! | TAGTAAAAAATATCTGCAAC+AGG | - | chr3.2:74167398-74167417 | MS.gene79096:CDS | 25.0% |
| ! | TATGCTCAAATGATATGAAT+GGG | + | chr3.2:74167380-74167399 | None:intergenic | 25.0% |
| ! | TCAAAGCAATAGAAAGAAAA+GGG | - | chr3.2:74168184-74168203 | MS.gene79096:intron | 25.0% |
| ! | TGCTGAAAAGAAACTAATTA+AGG | + | chr3.2:74166987-74167006 | None:intergenic | 25.0% |
| ! | TTACATATTTGCTCAATACA+TGG | - | chr3.2:74170396-74170415 | MS.gene79096:intron | 25.0% |
| ! | TTTATAAATGGGGATAATTC+GGG | + | chr3.2:74167751-74167770 | None:intergenic | 25.0% |
| ! | TTTCTCCAACAAGTAATTTA+TGG | + | chr3.2:74168055-74168074 | None:intergenic | 25.0% |
| !!! | AACAACAATCTGACTTTTTT+TGG | + | chr3.2:74168628-74168647 | None:intergenic | 25.0% |
| !!! | AATTAGTTTCTTTTCAGCAA+AGG | - | chr3.2:74166988-74167007 | MS.gene79096:CDS | 25.0% |
| !!! | ATTAGTTTCTTTTCAGCAAA+GGG | - | chr3.2:74166989-74167008 | MS.gene79096:CDS | 25.0% |
| !!! | CATCTCTTAATTTTTTTTCC+AGG | + | chr3.2:74168697-74168716 | None:intergenic | 25.0% |
| !!! | CATGTTTTTTTAGGTATCAA+TGG | - | chr3.2:74169208-74169227 | MS.gene79096:intron | 25.0% |
| !!! | GTATCAATGGCTATTTTTTT+CGG | - | chr3.2:74169221-74169240 | MS.gene79096:intron | 25.0% |
| !!! | TATATGTGCGATTTTAGAAA+TGG | - | chr3.2:74167578-74167597 | MS.gene79096:CDS | 25.0% |
| !!! | TATTTCTCCCATGTTTTTTT+AGG | - | chr3.2:74169199-74169218 | MS.gene79096:intron | 25.0% |
| !!! | TTTGGTTCTTGATTAGAATA+TGG | + | chr3.2:74168610-74168629 | None:intergenic | 25.0% |
| AAAGTGTAAAAGGTCAAAGT+GGG | + | chr3.2:74167939-74167958 | None:intergenic | 30.0% | |
| AACACAATGTCCTTTATATC+AGG | + | chr3.2:74170496-74170515 | None:intergenic | 30.0% | |
| AAGATTATGTTAACCTTACC+CGG | - | chr3.2:74170869-74170888 | MS.gene79096:CDS | 30.0% | |
| AATATGTAATCTCCAACTCT+TGG | + | chr3.2:74170385-74170404 | None:intergenic | 30.0% | |
| ACACTTAGCATTATGTAAAG+AGG | + | chr3.2:74168091-74168110 | None:intergenic | 30.0% | |
| ACATTGTGTTTAAGCACTTT+GGG | - | chr3.2:74170506-74170525 | MS.gene79096:intron | 30.0% | |
| AGATTTAGACCTTAAGTAAG+TGG | + | chr3.2:74167147-74167166 | None:intergenic | 30.0% | |
| ATGGGAGAAATATTTGTCAT+TGG | + | chr3.2:74169191-74169210 | None:intergenic | 30.0% | |
| CACTTAGCATTATGTAAAGA+GGG | + | chr3.2:74168090-74168109 | None:intergenic | 30.0% | |
| CATTTCCATAGTGTATTCAA+AGG | - | chr3.2:74169607-74169626 | MS.gene79096:intron | 30.0% | |
| CCTGGATCAAAATAATAGTA+AGG | - | chr3.2:74169893-74169912 | MS.gene79096:intron | 30.0% | |
| CGAGACATTTATTTGTTTGA+TGG | + | chr3.2:74167662-74167681 | None:intergenic | 30.0% | |
| CTAAGTTGTGGAAATACATT+AGG | - | chr3.2:74169632-74169651 | MS.gene79096:intron | 30.0% | |
| CTATGCTCAAATGATATGAA+TGG | + | chr3.2:74167381-74167400 | None:intergenic | 30.0% | |
| GATGACAATGAATAAGTTCT+AGG | + | chr3.2:74169874-74169893 | None:intergenic | 30.0% | |
| GGTAAGGTTAACATAATCTT+GGG | + | chr3.2:74170869-74170888 | None:intergenic | 30.0% | |
| GTAAGGTTAACATAATCTTG+GGG | + | chr3.2:74170868-74170887 | None:intergenic | 30.0% | |
| GTCAAAGCAATAGAAAGAAA+AGG | - | chr3.2:74168183-74168202 | MS.gene79096:intron | 30.0% | |
| TAAATGCGGGTAATGAATAT+GGG | - | chr3.2:74169745-74169764 | MS.gene79096:intron | 30.0% | |
| TCATTTGATTGGGAACTTAT+AGG | - | chr3.2:74168122-74168141 | MS.gene79096:intron | 30.0% | |
| TCGTTAGCATATTATTGGTA+TGG | - | chr3.2:74167023-74167042 | MS.gene79096:intron | 30.0% | |
| TGATAGAAACTATAATGGCA+AGG | - | chr3.2:74170543-74170562 | MS.gene79096:intron | 30.0% | |
| TTAAATGCGGGTAATGAATA+TGG | - | chr3.2:74169744-74169763 | MS.gene79096:intron | 30.0% | |
| ! | AAAAGTGTAAAAGGTCAAAG+TGG | + | chr3.2:74167940-74167959 | None:intergenic | 30.0% |
| ! | AATGTTGTTTGATGTCATTG+TGG | - | chr3.2:74167982-74168001 | MS.gene79096:intron | 30.0% |
| ! | ACGAGAATGAAGCTTTTATA+CGG | - | chr3.2:74166872-74166891 | MS.gene79096:CDS | 30.0% |
| ! | ATGTTGTTTGATGTCATTGT+GGG | - | chr3.2:74167983-74168002 | MS.gene79096:intron | 30.0% |
| ! | ATTGGTTGGTATTTGAAACT+TGG | - | chr3.2:74169922-74169941 | MS.gene79096:intron | 30.0% |
| ! | CAAACTCTAAAAAAGGTAAG+TGG | + | chr3.2:74168775-74168794 | None:intergenic | 30.0% |
| ! | TAGTAAGGTTGATTATTGGT+TGG | - | chr3.2:74169908-74169927 | MS.gene79096:intron | 30.0% |
| !! | AATGTCAGTGAATGCTTTTT+GGG | - | chr3.2:74170726-74170745 | MS.gene79096:intron | 30.0% |
| !! | ATGGTTCTGGTTTATAAATG+GGG | + | chr3.2:74167761-74167780 | None:intergenic | 30.0% |
| !! | CATGGTTCTGGTTTATAAAT+GGG | + | chr3.2:74167762-74167781 | None:intergenic | 30.0% |
| !! | TAATGCTGCTTTGTTTATGA+TGG | - | chr3.2:74166834-74166853 | MS.gene79096:CDS | 30.0% |
| !! | TCATGGTTCTGGTTTATAAA+TGG | + | chr3.2:74167763-74167782 | None:intergenic | 30.0% |
| !! | TGTCAATTACTTTTAGCTAG+TGG | + | chr3.2:74167229-74167248 | None:intergenic | 30.0% |
| !!! | CCTTACTATTATTTTGATCC+AGG | + | chr3.2:74169896-74169915 | None:intergenic | 30.0% |
| !!! | TTTTTTGTCTCTCCAAATTG+CGG | - | chr3.2:74169829-74169848 | MS.gene79096:intron | 30.0% |
| AAATAACTCGGTTCCTCAAA+AGG | + | chr3.2:74170026-74170045 | None:intergenic | 35.0% | |
| ACAAAGCAGCATTATACTTG+AGG | + | chr3.2:74166828-74166847 | None:intergenic | 35.0% | |
| ACAATGTCCTTTATATCAGG+AGG | + | chr3.2:74170493-74170512 | None:intergenic | 35.0% | |
| ACACATGAACCACTTACTTA+AGG | - | chr3.2:74167135-74167154 | MS.gene79096:intron | 35.0% | |
| AGGAATAAAGTCATCTTCGA+AGG | + | chr3.2:74167837-74167856 | None:intergenic | 35.0% | |
| AGGTTTACAAAGAAGCAACA+TGG | - | chr3.2:74170135-74170154 | MS.gene79096:intron | 35.0% | |
| AGTAGTAAGCTTCAAGTGTA+TGG | + | chr3.2:74170192-74170211 | None:intergenic | 35.0% | |
| AGTTATTTGATGCCGAACAA+TGG | - | chr3.2:74170038-74170057 | MS.gene79096:intron | 35.0% | |
| ATCAGATACACAACTTTAGC+AGG | - | chr3.2:74167798-74167817 | MS.gene79096:intron | 35.0% | |
| ATGATATGAATGGGAGAGTA+TGG | + | chr3.2:74167371-74167390 | None:intergenic | 35.0% | |
| CATAGTTGAAAATCGTTGGA+AGG | - | chr3.2:74166897-74166916 | MS.gene79096:CDS | 35.0% | |
| GAACTTATTCATTGTCATCC+TGG | - | chr3.2:74169875-74169894 | MS.gene79096:intron | 35.0% | |
| GACATTGTGTTTAAGCACTT+TGG | - | chr3.2:74170505-74170524 | MS.gene79096:intron | 35.0% | |
| GGGTAAGGTTAACATAATCT+TGG | + | chr3.2:74170870-74170889 | None:intergenic | 35.0% | |
| GGTTTACAAAGAAGCAACAT+GGG | - | chr3.2:74170136-74170155 | MS.gene79096:intron | 35.0% | |
| GTAGTTGCATTGGAGTAAAT+GGG | + | chr3.2:74168014-74168033 | None:intergenic | 35.0% | |
| GTTATTTGATGCCGAACAAT+GGG | - | chr3.2:74170039-74170058 | MS.gene79096:intron | 35.0% | |
| GTTGCTTCTTTGTAAACCTA+AGG | + | chr3.2:74170134-74170153 | None:intergenic | 35.0% | |
| TAAGATCTCTACTGTAGTCT+GGG | - | chr3.2:74169800-74169819 | MS.gene79096:intron | 35.0% | |
| TAATCTTGGGGTAAGTGATT+AGG | + | chr3.2:74170856-74170875 | None:intergenic | 35.0% | |
| TAGACCCTTTGAATACACTA+TGG | + | chr3.2:74169615-74169634 | None:intergenic | 35.0% | |
| TAGGTTTCCTCCTGATATAA+AGG | - | chr3.2:74170483-74170502 | MS.gene79096:intron | 35.0% | |
| TATTCAAAGGGTCTAAGTTG+TGG | - | chr3.2:74169620-74169639 | MS.gene79096:intron | 35.0% | |
| TCACGCCATAAATTACTTGT+TGG | - | chr3.2:74168047-74168066 | MS.gene79096:intron | 35.0% | |
| TCCTCAAAAGGTTACTATGT+AGG | + | chr3.2:74170014-74170033 | None:intergenic | 35.0% | |
| TGAAACTTGGCAGATTATCA+AGG | - | chr3.2:74169935-74169954 | MS.gene79096:intron | 35.0% | |
| TGATTGTGATATCTCATGGT+TGG | - | chr3.2:74170066-74170085 | MS.gene79096:intron | 35.0% | |
| TGTAAGATTACACCACCAAT+TGG | - | chr3.2:74167714-74167733 | MS.gene79096:CDS | 35.0% | |
| TTAAGATCTCTACTGTAGTC+TGG | - | chr3.2:74169799-74169818 | MS.gene79096:intron | 35.0% | |
| TTAGCATTATGTAAAGAGGG+AGG | + | chr3.2:74168087-74168106 | None:intergenic | 35.0% | |
| TTGTTCGGCATCAAATAACT+CGG | + | chr3.2:74170038-74170057 | None:intergenic | 35.0% | |
| TTTATATCAGGAGGAAACCT+AGG | + | chr3.2:74170484-74170503 | None:intergenic | 35.0% | |
| ! | AAGTGGGTGAATTTTCAACA+TGG | + | chr3.2:74167923-74167942 | None:intergenic | 35.0% |
| ! | ACCTACATAGTAACCTTTTG+AGG | - | chr3.2:74170010-74170029 | MS.gene79096:intron | 35.0% |
| ! | CAATGTCAGTGAATGCTTTT+TGG | - | chr3.2:74170725-74170744 | MS.gene79096:intron | 35.0% |
| ! | CGAGAATGAAGCTTTTATAC+GGG | - | chr3.2:74166873-74166892 | MS.gene79096:CDS | 35.0% |
| ! | GGACACAAATTTGTCTTTTG+TGG | + | chr3.2:74169010-74169029 | None:intergenic | 35.0% |
| ! | GTGTTCAATTTTCCAATTGG+TGG | + | chr3.2:74167729-74167748 | None:intergenic | 35.0% |
| ! | TAGCTAGTGGCCAATTTTAT+AGG | + | chr3.2:74167216-74167235 | None:intergenic | 35.0% |
| ! | TGTTGTAGTGTGGTGTTTTT+AGG | + | chr3.2:74167865-74167884 | None:intergenic | 35.0% |
| ! | TGTTGTTTGATGTCATTGTG+GGG | - | chr3.2:74167984-74168003 | MS.gene79096:intron | 35.0% |
| ! | TTTTTGTCTCTCCAAATTGC+GGG | - | chr3.2:74169830-74169849 | MS.gene79096:intron | 35.0% |
| ! | TTTTTGTGCTCTTGCATAGA+TGG | - | chr3.2:74167270-74167289 | MS.gene79096:CDS | 35.0% |
| !! | ACATTTTCAGAAAGTGCAAG+AGG | - | chr3.2:74170663-74170682 | MS.gene79096:intron | 35.0% |
| !! | CAAAAAGCATTCACTGACAT+TGG | + | chr3.2:74170727-74170746 | None:intergenic | 35.0% |
| !! | CTCACTTAAGCTCTAAAATG+AGG | + | chr3.2:74168346-74168365 | None:intergenic | 35.0% |
| !! | GTTGTAGTGTGGTGTTTTTA+GGG | + | chr3.2:74167864-74167883 | None:intergenic | 35.0% |
| !!! | GATGGGTTTTAAGAGCATTT+CGG | - | chr3.2:74170803-74170822 | MS.gene79096:CDS | 35.0% |
| AACATATCATCTCTCCAACC+AGG | - | chr3.2:74168418-74168437 | MS.gene79096:intron | 40.0% | |
| ACATATCATCTCTCCAACCA+GGG | - | chr3.2:74168419-74168438 | MS.gene79096:intron | 40.0% | |
| ACATTTGGTCAACCAAGAGT+TGG | - | chr3.2:74170370-74170389 | MS.gene79096:intron | 40.0% | |
| AGCGTACATGTATCACATGT+GGG | - | chr3.2:74169774-74169793 | MS.gene79096:intron | 40.0% | |
| AGTTGTGTCTCCACTTTGAT+TGG | + | chr3.2:74168450-74168469 | None:intergenic | 40.0% | |
| CAATGCAACTACGTACTTCA+CGG | - | chr3.2:74168022-74168041 | MS.gene79096:intron | 40.0% | |
| CACAATGTTGAAGTTGAACC+TGG | - | chr3.2:74168676-74168695 | MS.gene79096:intron | 40.0% | |
| CAGGTGATTGTGATATCTCA+TGG | - | chr3.2:74170062-74170081 | MS.gene79096:intron | 40.0% | |
| CAGGTTCAACTTCAACATTG+TGG | + | chr3.2:74168678-74168697 | None:intergenic | 40.0% | |
| CGTAGTTGCATTGGAGTAAA+TGG | + | chr3.2:74168015-74168034 | None:intergenic | 40.0% | |
| CGTATGTGTCCACAACTAAA+CGG | + | chr3.2:74167059-74167078 | None:intergenic | 40.0% | |
| CTTCAAGGGGTTTACACATT+TGG | - | chr3.2:74170355-74170374 | MS.gene79096:intron | 40.0% | |
| GGGACATAGTTGAAAATCGT+TGG | - | chr3.2:74166893-74166912 | MS.gene79096:CDS | 40.0% | |
| GTTGTGTCTCCACTTTGATT+GGG | + | chr3.2:74168449-74168468 | None:intergenic | 40.0% | |
| TACAAAGAAGCAACATGGGT+TGG | - | chr3.2:74170140-74170159 | MS.gene79096:intron | 40.0% | |
| TATGGACCTGAGTATCAAGA+GGG | - | chr3.2:74170781-74170800 | MS.gene79096:intron | 40.0% | |
| TATGTTAACCTTACCCGGTT+GGG | - | chr3.2:74170874-74170893 | MS.gene79096:CDS | 40.0% | |
| TCATGCAACATCAATATCGC+AGG | + | chr3.2:74170313-74170332 | None:intergenic | 40.0% | |
| TCGAGAAAATTGATCCCAAC+CGG | + | chr3.2:74170891-74170910 | None:intergenic | 40.0% | |
| TCTTGCATAGATGGAAGTTG+TGG | - | chr3.2:74167279-74167298 | MS.gene79096:CDS | 40.0% | |
| TGCGATATTGATGTTGCATG+AGG | - | chr3.2:74170312-74170331 | MS.gene79096:intron | 40.0% | |
| TTATGTTAACCTTACCCGGT+TGG | - | chr3.2:74170873-74170892 | MS.gene79096:CDS | 40.0% | |
| TTGTGTCTCCACTTTGATTG+GGG | + | chr3.2:74168448-74168467 | None:intergenic | 40.0% | |
| ! | ATATTGACTGGTCACAGTCT+AGG | - | chr3.2:74170265-74170284 | MS.gene79096:intron | 40.0% |
| ! | CGGGTGTTCAATTTTCCAAT+TGG | + | chr3.2:74167732-74167751 | None:intergenic | 40.0% |
| ! | GCATGAGGAGTCATTTCTTT+TGG | - | chr3.2:74170327-74170346 | MS.gene79096:intron | 40.0% |
| !! | AATGATCGTTGAGTTGACAG+CGG | + | chr3.2:74169591-74169610 | None:intergenic | 40.0% |
| !! | AGGAGTCATTTCTTTTGGAG+AGG | - | chr3.2:74170332-74170351 | MS.gene79096:intron | 40.0% |
| !! | ATGCTTTTTGGGAGCTCATA+AGG | - | chr3.2:74170737-74170756 | MS.gene79096:intron | 40.0% |
| !! | CAACATGGTTTGTTGTAGTG+TGG | + | chr3.2:74167875-74167894 | None:intergenic | 40.0% |
| !! | GAGTTGGACAAAAGCATCAA+AGG | - | chr3.2:74166796-74166815 | MS.gene79096:CDS | 40.0% |
| !! | TTAAGAGCATTTCGGCTTGT+TGG | - | chr3.2:74170811-74170830 | MS.gene79096:CDS | 40.0% |
| !! | TTCTTTTGGAGAGGCTTCAA+GGG | - | chr3.2:74170341-74170360 | MS.gene79096:intron | 40.0% |
| !! | TTTCTTTTGGAGAGGCTTCA+AGG | - | chr3.2:74170340-74170359 | MS.gene79096:intron | 40.0% |
| AAATTGATCCCAACCGGGTA+AGG | + | chr3.2:74170885-74170904 | None:intergenic | 45.0% | |
| ACAATCACCTGCCCATTGTT+CGG | + | chr3.2:74170053-74170072 | None:intergenic | 45.0% | |
| ACCTGAGTATCAAGAGGGAT+GGG | - | chr3.2:74170786-74170805 | MS.gene79096:CDS | 45.0% | |
| ATGTGTCCACAACTAAACGG+CGG | + | chr3.2:74167056-74167075 | None:intergenic | 45.0% | |
| CGAGAAAATTGATCCCAACC+GGG | + | chr3.2:74170890-74170909 | None:intergenic | 45.0% | |
| CGTGAAGTACGTAGTTGCAT+TGG | + | chr3.2:74168024-74168043 | None:intergenic | 45.0% | |
| GAGCGTACATGTATCACATG+TGG | - | chr3.2:74169773-74169792 | MS.gene79096:intron | 45.0% | |
| GCTCATAAGGAGCTTCACTA+TGG | - | chr3.2:74170750-74170769 | MS.gene79096:intron | 45.0% | |
| GGACTTGGAAAAACTCATGC+TGG | - | chr3.2:74170097-74170116 | MS.gene79096:intron | 45.0% | |
| GGTAAGTGATTAGGTACTCC+AGG | + | chr3.2:74170847-74170866 | None:intergenic | 45.0% | |
| TAGATGGAAGTTGTGGCATG+CGG | - | chr3.2:74167286-74167305 | MS.gene79096:CDS | 45.0% | |
| TAGTGTGCTAACCTGTGCTA+CGG | - | chr3.2:74168964-74168983 | MS.gene79096:intron | 45.0% | |
| ! | AGGTTACTATGTAGGTGTCG+TGG | + | chr3.2:74170006-74170025 | None:intergenic | 45.0% |
| ! | GCATGAGTTTTTCCAAGTCC+AGG | + | chr3.2:74170097-74170116 | None:intergenic | 45.0% |
| ! | GCTGGTTTCATGAAAGCCTT+AGG | - | chr3.2:74170115-74170134 | MS.gene79096:intron | 45.0% |
| !! | ATGATCGTTGAGTTGACAGC+GGG | + | chr3.2:74169590-74169609 | None:intergenic | 45.0% |
| !! | TCTTTTGGAGAGGCTTCAAG+GGG | - | chr3.2:74170342-74170361 | MS.gene79096:intron | 45.0% |
| !!! | TGTGGTGTTTTTAGGGTGCA+AGG | + | chr3.2:74167857-74167876 | None:intergenic | 45.0% |
| !! | AATGATAAATATTTAAAAAA+AGG | + | chr3.2:74169478-74169497 | None:intergenic | 5.0% |
| !! | ACTAATAAATATAAAAATAT+AGG | + | chr3.2:74169031-74169050 | None:intergenic | 5.0% |
| !! | ATGATAAATATTTAAAAAAA+GGG | + | chr3.2:74169477-74169496 | None:intergenic | 5.0% |
| !! | TTGATAAATATATAAAAATT+GGG | + | chr3.2:74169377-74169396 | None:intergenic | 5.0% |
| !! | TTTGATAAATATATAAAAAT+TGG | + | chr3.2:74169378-74169397 | None:intergenic | 5.0% |
| ACCCATCCCTCTTGATACTC+AGG | + | chr3.2:74170790-74170809 | None:intergenic | 50.0% | |
| AGTGTGCTAACCTGTGCTAC+GGG | - | chr3.2:74168965-74168984 | MS.gene79096:intron | 50.0% | |
| ATCTCATGGTTGGAGCTTCC+TGG | - | chr3.2:74170076-74170095 | MS.gene79096:intron | 50.0% | |
| GACCTGAGTATCAAGAGGGA+TGG | - | chr3.2:74170785-74170804 | MS.gene79096:CDS | 50.0% | |
| TGTGTCCACAACTAAACGGC+GGG | + | chr3.2:74167055-74167074 | None:intergenic | 50.0% | |
| TTTGATGCCGAACAATGGGC+AGG | - | chr3.2:74170043-74170062 | MS.gene79096:intron | 50.0% | |
| ! | GTTTTCCCGCCGTTTAGTTG+TGG | - | chr3.2:74167047-74167066 | MS.gene79096:intron | 50.0% |
| ! | TTGACTGGTCACAGTCTAGG+TGG | - | chr3.2:74170268-74170287 | MS.gene79096:intron | 50.0% |
| !! | CTTGTTGGCTTACTAGTGCC+TGG | - | chr3.2:74170826-74170845 | MS.gene79096:CDS | 50.0% |
| CTCTCCAAATTGCGGGTACG+AGG | - | chr3.2:74169837-74169856 | MS.gene79096:intron | 55.0% | |
| GCATGCGGTGACTACTGGAA+TGG | - | chr3.2:74167301-74167320 | MS.gene79096:CDS | 55.0% | |
| GTGTGCTAACCTGTGCTACG+GGG | - | chr3.2:74168966-74168985 | MS.gene79096:intron | 55.0% | |
| TCGTCCTCGTACCCGCAATT+TGG | + | chr3.2:74169844-74169863 | None:intergenic | 55.0% | |
| TGGTTGGAGCTTCCTGGACT+TGG | - | chr3.2:74170082-74170101 | MS.gene79096:intron | 55.0% | |
| TTGTGGCATGCGGTGACTAC+TGG | - | chr3.2:74167296-74167315 | MS.gene79096:CDS | 55.0% | |
| CACATGTCACCCCGTAGCAC+AGG | + | chr3.2:74168978-74168997 | None:intergenic | 60.0% | |
| CACTTTGATTGGGGCGACCC+TGG | + | chr3.2:74168439-74168458 | None:intergenic | 60.0% | |
| CAGGGTCGCCCCAATCAAAG+TGG | - | chr3.2:74168437-74168456 | MS.gene79096:intron | 60.0% | |
| TTGATTGGGGCGACCCTGGT+TGG | + | chr3.2:74168435-74168454 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 74166781 | 74170921 | 74166781 | ID=MS.gene79096 |
| chr3.2 | mRNA | 74166781 | 74170921 | 74166781 | ID=MS.gene79096.t1;Parent=MS.gene79096 |
| chr3.2 | exon | 74170784 | 74170921 | 74170784 | ID=MS.gene79096.t1.exon1;Parent=MS.gene79096.t1 |
| chr3.2 | CDS | 74170784 | 74170921 | 74170784 | ID=cds.MS.gene79096.t1;Parent=MS.gene79096.t1 |
| chr3.2 | exon | 74170380 | 74170413 | 74170380 | ID=MS.gene79096.t1.exon2;Parent=MS.gene79096.t1 |
| chr3.2 | CDS | 74170380 | 74170413 | 74170380 | ID=cds.MS.gene79096.t1;Parent=MS.gene79096.t1 |
| chr3.2 | exon | 74167684 | 74167754 | 74167684 | ID=MS.gene79096.t1.exon3;Parent=MS.gene79096.t1 |
| chr3.2 | CDS | 74167684 | 74167754 | 74167684 | ID=cds.MS.gene79096.t1;Parent=MS.gene79096.t1 |
| chr3.2 | exon | 74167138 | 74167611 | 74167138 | ID=MS.gene79096.t1.exon4;Parent=MS.gene79096.t1 |
| chr3.2 | CDS | 74167138 | 74167611 | 74167138 | ID=cds.MS.gene79096.t1;Parent=MS.gene79096.t1 |
| chr3.2 | exon | 74166781 | 74167029 | 74166781 | ID=MS.gene79096.t1.exon5;Parent=MS.gene79096.t1 |
| chr3.2 | CDS | 74166781 | 74167029 | 74166781 | ID=cds.MS.gene79096.t1;Parent=MS.gene79096.t1 |
| Gene Sequence |
| Protein sequence |
