AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79144

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79144.t1 MTR_3g101030 80.471 425 66 3 39 446 5 429 0.0 674
MS.gene79144.t1 MTR_3g101050 72.768 448 68 7 1 445 1 397 0.0 601
MS.gene79144.t1 MTR_3g101010 80.940 383 69 2 66 446 9 389 0.0 598
MS.gene79144.t1 MTR_3g018740 69.974 383 108 3 65 444 8 386 0.0 521
MS.gene79144.t1 MTR_8g027395 68.052 385 115 3 64 446 19 397 0.0 516
MS.gene79144.t1 MTR_4g045707 67.092 392 121 5 57 446 3 388 9.97e-179 504
MS.gene79144.t1 MTR_8g461160 65.561 392 131 2 57 444 1 392 1.63e-176 499
MS.gene79144.t1 MTR_3g101180 64.322 398 130 4 57 444 3 398 3.02e-172 489
MS.gene79144.t1 MTR_8g027420 65.195 385 115 4 64 446 8 375 3.59e-172 488
MS.gene79144.t1 MTR_7g451890 60.050 403 155 3 48 446 2 402 2.20e-166 474
MS.gene79144.t1 MTR_3g048000 62.887 388 119 5 60 444 25 390 4.67e-166 473
MS.gene79144.t1 MTR_2g046030 63.896 385 126 5 66 444 9 386 4.63e-164 468
MS.gene79144.t1 MTR_7g047780 60.050 403 155 3 48 446 2 402 6.78e-164 468
MS.gene79144.t1 MTR_4g088525 65.123 367 120 3 81 445 8 368 7.95e-164 466
MS.gene79144.t1 MTR_2g045980 63.896 385 126 5 66 444 9 386 1.96e-163 466
MS.gene79144.t1 MTR_7g050810 61.440 389 138 3 66 446 20 404 1.98e-163 466
MS.gene79144.t1 MTR_4g088535 64.508 386 111 6 58 441 5 366 1.14e-162 464
MS.gene79144.t1 MTR_7g050750 61.039 385 146 2 66 446 12 396 2.83e-161 461
MS.gene79144.t1 MTR_3g101130 60.471 382 148 2 66 446 10 389 1.07e-159 456
MS.gene79144.t1 MTR_3g015620 61.198 384 119 6 66 444 20 378 1.61e-150 433
MS.gene79144.t1 MTR_3g100995 75.686 255 61 1 192 446 11 264 3.33e-139 399
MS.gene79144.t1 MTR_3g102920 58.421 380 116 6 70 444 66 408 4.81e-137 400
MS.gene79144.t1 MTR_3g101200 55.285 369 140 4 78 444 45 390 4.67e-126 371
MS.gene79144.t1 MTR_3g101190 54.076 368 102 4 83 446 8 312 8.05e-124 362
MS.gene79144.t1 MTR_3g018747 68.846 260 63 3 188 444 9 253 3.27e-121 353
MS.gene79144.t1 MTR_3g100010 58.075 322 87 2 85 373 38 344 3.49e-116 344
MS.gene79144.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 6.00e-111 330
MS.gene79144.t1 MTR_3g015760 58.484 277 105 4 173 444 8 279 4.09e-99 298
MS.gene79144.t1 MTR_3g111160 68.571 210 61 2 240 446 13 220 4.52e-90 273
MS.gene79144.t1 MTR_3g101110 60.251 239 63 4 188 420 68 280 2.58e-86 265
MS.gene79144.t1 MTR_3g100520 60.360 222 71 3 229 446 1 209 1.58e-85 261
MS.gene79144.t1 MTR_3g114310 42.000 400 205 12 64 446 21 410 3.03e-84 265
MS.gene79144.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 1.32e-83 255
MS.gene79144.t1 MTR_2g046410 64.532 203 64 3 248 444 147 347 1.94e-79 250
MS.gene79144.t1 MTR_3g101020 67.027 185 36 2 262 446 1 160 1.37e-76 236
MS.gene79144.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 8.01e-62 198
MS.gene79144.t1 MTR_3g101150 61.783 157 54 2 294 444 1 157 8.63e-59 190
MS.gene79144.t1 MTR_3g102870 57.143 161 67 1 251 409 1 161 6.79e-56 183
MS.gene79144.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 2.38e-44 162
MS.gene79144.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 2.21e-24 97.1
MS.gene79144.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 7.28e-20 85.9
MS.gene79144.t1 MTR_3g101140 63.077 65 23 1 383 446 52 116 1.39e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79144.t1 AT1G47710 51.605 405 187 4 44 444 18 417 6.12e-143 415
MS.gene79144.t1 AT1G47710 53.141 382 174 3 67 444 10 390 9.44e-143 414
MS.gene79144.t1 AT3G45220 48.072 389 184 6 66 443 9 390 7.43e-120 355
MS.gene79144.t1 AT2G25240 47.656 384 185 7 66 443 9 382 2.09e-114 341
MS.gene79144.t1 AT2G26390 46.770 387 188 6 66 443 9 386 1.20e-112 337
MS.gene79144.t1 AT1G62170 42.779 367 183 4 85 445 88 433 1.57e-95 294
MS.gene79144.t1 AT2G14540 44.531 384 184 6 66 443 37 397 2.32e-94 290
MS.gene79144.t1 AT1G64030 42.708 384 193 7 66 443 9 371 1.36e-91 283
MS.gene79144.t1 AT2G35580 42.091 373 187 8 81 443 18 371 1.13e-89 277
MS.gene79144.t1 AT1G62170 39.250 400 183 5 85 445 88 466 1.25e-88 278
MS.gene79144.t1 AT1G64010 46.759 216 93 4 229 443 1 195 2.32e-59 193
MS.gene79144.t1 AT1G64010 46.766 201 85 4 244 443 2 181 2.60e-53 177
MS.gene79144.t1 AT1G62160 40.110 182 86 4 266 445 60 220 1.22e-34 129
MS.gene79144.t1 AT1G63280 52.174 115 51 2 188 300 8 120 5.04e-32 118
MS.gene79144.t1 AT1G51330 49.550 111 53 2 187 294 30 140 6.54e-24 99.0
MS.gene79144.t1 AT1G64020 32.432 111 72 3 70 179 13 121 2.88e-12 63.9

Find 102 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69551878 MS.gene79144:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69551979 MS.gene79144:CDS
TTGTCTTCGCCTTGCTTATA+AGG 0.248930 7.2:+69551710 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69552462 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-69551474 MS.gene79144:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69552585 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69551548 MS.gene79144:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69551239 MS.gene79144:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69552339 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69551549 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-69551639 MS.gene79144:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69551976 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69552252 MS.gene79144:CDS
GAAGAAGCAGAGAACAAAAT+TGG 0.347022 7.2:+69552669 None:intergenic
TTTCTTCCAAATGCAAAAGA+TGG 0.358663 7.2:-69551665 MS.gene79144:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69551574 MS.gene79144:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69551548 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69552477 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+69551379 None:intergenic
ATTCAAAAGGTGAAAGTCAT+AGG 0.388384 7.2:+69551817 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69551263 MS.gene79144:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69552219 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69552218 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69552455 MS.gene79144:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69552205 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69551932 MS.gene79144:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69551801 MS.gene79144:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69551804 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69551258 MS.gene79144:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69551931 MS.gene79144:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-69551591 MS.gene79144:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69552572 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69551404 MS.gene79144:CDS
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:+69551293 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69552397 MS.gene79144:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69552214 MS.gene79144:CDS
TTCTTCCAAATGCAAAAGAT+GGG 0.486946 7.2:-69551664 MS.gene79144:CDS
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+69552519 None:intergenic
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+69551638 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69552251 MS.gene79144:CDS
GTGTTGCAGTAACTCAGATT+CGG 0.491692 7.2:+69551613 None:intergenic
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69552271 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-69552406 MS.gene79144:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69552373 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69551978 MS.gene79144:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69552344 None:intergenic
CTTCGCCTTGCTTATAAGGA+AGG 0.497710 7.2:+69551714 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69552595 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69551238 MS.gene79144:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69552381 None:intergenic
TGCAGTCAGTAGCAGTGGCA+TGG 0.511284 7.2:-69551351 MS.gene79144:CDS
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:-69551281 MS.gene79144:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:+69551294 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69552510 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69552372 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69551323 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69552488 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+69552424 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532609 7.2:-69551719 MS.gene79144:CDS
GCAGTCAGTAGCAGTGGCAT+GGG 0.532869 7.2:-69551350 MS.gene79144:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69552398 MS.gene79144:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69551871 MS.gene79144:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69552347 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69552309 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69552315 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+69552515 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.547156 7.2:-69551515 MS.gene79144:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69552282 MS.gene79144:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69552286 MS.gene79144:CDS
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69551584 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69552561 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69552259 MS.gene79144:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69551584 MS.gene79144:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69552158 MS.gene79144:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69552298 MS.gene79144:CDS
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69552374 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+69551482 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69551227 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69552283 MS.gene79144:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69552302 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69552489 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69552330 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69551522 MS.gene79144:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69552270 None:intergenic
GCAGAGAACAAAATTGGCGA+TGG 0.606690 7.2:+69552675 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69552503 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-69551927 MS.gene79144:CDS
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69552653 MS.gene79144:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69552562 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69552248 MS.gene79144:CDS
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+69552530 None:intergenic
TCTGATGCAGTCAGTAGCAG+TGG 0.636122 7.2:-69551356 MS.gene79144:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69551959 MS.gene79144:CDS
ACTGACTGCATCAGATGCGG+TGG 0.641619 7.2:+69551364 None:intergenic
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69552483 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69551910 MS.gene79144:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69552333 None:intergenic
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+69552533 None:intergenic
GCTACTGACTGCATCAGATG+CGG 0.675085 7.2:+69551361 None:intergenic
TATGCTGAAGGAGCTAGGTG+TGG 0.709172 7.2:-69551510 MS.gene79144:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69552259 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69551917 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69551915-69551934 MS.gene79144:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69551854-69551873 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69552389-69552408 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG + chr7.2:69552644-69552663 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG + chr7.2:69552645-69552664 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69551924-69551943 MS.gene79144:CDS 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69551480-69551499 MS.gene79144:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG - chr7.2:69552654-69552673 MS.gene79144:CDS 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69552387-69552406 MS.gene79144:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69552390-69552409 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69552531-69552550 MS.gene79144:CDS 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69551819-69551838 None:intergenic 25.0%
!! TAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69551820-69551839 None:intergenic 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69552086-69552105 MS.gene79144:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69552503-69552522 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69552198-69552217 MS.gene79144:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69551343-69551362 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69552003-69552022 MS.gene79144:intron 30.0%
ATTCAAAAGGTGAAAGTCAT+AGG + chr7.2:69552121-69552140 None:intergenic 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69551476-69551495 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69551957-69551976 MS.gene79144:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69552134-69552153 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69551956-69551975 MS.gene79144:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69552004-69552023 MS.gene79144:intron 30.0%
TTCTTCCAAATGCAAAAGAT+GGG - chr7.2:69552271-69552290 MS.gene79144:CDS 30.0%
TTTCTTCCAAATGCAAAAGA+TGG - chr7.2:69552270-69552289 MS.gene79144:CDS 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69552134-69552153 MS.gene79144:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69551321-69551340 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69551818-69551837 None:intergenic 30.0%
! TATGACTTTCACCTTTTGAA+TGG - chr7.2:69552120-69552139 MS.gene79144:intron 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69551461-69551480 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69551353-69551372 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69552677-69552696 MS.gene79144:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69552672-69552691 MS.gene79144:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69551962-69551981 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69552461-69552480 MS.gene79144:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69551719-69551738 None:intergenic 35.0%
GAAGAAGCAGAGAACAAAAT+TGG + chr7.2:69551269-69551288 None:intergenic 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69551721-69551740 MS.gene79144:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69552413-69552432 MS.gene79144:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69551720-69551739 None:intergenic 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69551328-69551347 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69551733-69551752 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69551565-69551584 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:69552463-69552482 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69551777-69551796 MS.gene79144:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69552361-69552380 MS.gene79144:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69551376-69551395 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:69551514-69551533 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69551684-69551703 MS.gene79144:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69552344-69552363 MS.gene79144:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69552354-69552373 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69552351-69552370 MS.gene79144:CDS 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69552057-69552076 MS.gene79144:intron 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69551637-69551656 MS.gene79144:CDS 40.0%
GTGTTGCAGTAACTCAGATT+CGG + chr7.2:69552325-69552344 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69551683-69551702 MS.gene79144:CDS 40.0%
TTGTCTTCGCCTTGCTTATA+AGG + chr7.2:69552228-69552247 None:intergenic 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69551644-69551663 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69551566-69551585 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:69552447-69552466 MS.gene79144:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69551564-69551583 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:69552444-69552463 MS.gene79144:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69551450-69551469 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69551449-69551468 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69551679-69551698 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69551676-69551695 MS.gene79144:CDS 45.0%
CTTCGCCTTGCTTATAAGGA+AGG + chr7.2:69552224-69552243 None:intergenic 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69551377-69551396 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69551366-69551385 None:intergenic 45.0%
GCAGAGAACAAAATTGGCGA+TGG + chr7.2:69551263-69551282 None:intergenic 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69552615-69552634 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69551428-69551447 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69551455-69551474 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:69552456-69552475 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69552420-69552439 MS.gene79144:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69551976-69551995 MS.gene79144:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69552064-69552083 MS.gene79144:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69552216-69552235 MS.gene79144:CDS 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69551594-69551613 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69551636-69551655 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69552008-69552027 MS.gene79144:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69551599-69551618 None:intergenic 45.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69552697-69552716 MS.gene79144:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69551282-69551301 MS.gene79144:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69552296-69552315 MS.gene79144:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69552300-69552319 None:intergenic 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69552025-69552044 MS.gene79144:intron 50.0%
TATGCTGAAGGAGCTAGGTG+TGG - chr7.2:69552425-69552444 MS.gene79144:CDS 50.0%
TCTGATGCAGTCAGTAGCAG+TGG - chr7.2:69552579-69552598 MS.gene79144:CDS 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:69551408-69551427 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69551435-69551454 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69551687-69551706 MS.gene79144:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69551629-69551648 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69551591-69551610 None:intergenic 50.0%
! GCTACTGACTGCATCAGATG+CGG + chr7.2:69552577-69552596 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69552279-69552298 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69551605-69551624 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69551608-69551627 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69552021-69552040 None:intergenic 55.0%
ACTGACTGCATCAGATGCGG+TGG + chr7.2:69552574-69552593 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69552696-69552715 MS.gene79144:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:69551405-69551424 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69551423-69551442 None:intergenic 55.0%
GCAGTCAGTAGCAGTGGCAT+GGG - chr7.2:69552585-69552604 MS.gene79144:CDS 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:69551419-69551438 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:69551529-69551548 MS.gene79144:CDS 55.0%
TGCAGTCAGTAGCAGTGGCA+TGG - chr7.2:69552584-69552603 MS.gene79144:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69551557-69551576 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69551668-69551687 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69551649-69551668 MS.gene79144:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69551623-69551642 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69552559-69552578 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69551538-69551557 MS.gene79144:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69551653-69551672 MS.gene79144:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69551652-69551671 MS.gene79144:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69551667-69551686 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69551537-69551556 MS.gene79144:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69551235 69552722 69551235 ID=MS.gene79144
chr7.2 mRNA 69551235 69552722 69551235 ID=MS.gene79144.t1;Parent=MS.gene79144
chr7.2 exon 69552159 69552722 69552159 ID=MS.gene79144.t1.exon1;Parent=MS.gene79144.t1
chr7.2 CDS 69552159 69552722 69552159 ID=cds.MS.gene79144.t1;Parent=MS.gene79144.t1
chr7.2 exon 69551235 69552011 69551235 ID=MS.gene79144.t1.exon2;Parent=MS.gene79144.t1
chr7.2 CDS 69551235 69552011 69551235 ID=cds.MS.gene79144.t1;Parent=MS.gene79144.t1
Gene Sequence

>MS.gene79144

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAATTTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGACTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGCGAAGACAAGCGTCAATTTACTATGTATTTTTTTCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGCAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGTGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCAGTAGCAGTGGCATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene79144.t1

MRFSRKTIAIANFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLQHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVSSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG