AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79145

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79145.t1 MTR_3g101030 80.706 425 65 3 39 446 5 429 0.0 674
MS.gene79145.t1 MTR_3g101010 80.679 383 70 2 66 446 9 389 0.0 599
MS.gene79145.t1 MTR_3g101050 72.321 448 70 7 1 445 1 397 0.0 598
MS.gene79145.t1 MTR_3g018740 69.713 383 109 3 65 444 8 386 0.0 516
MS.gene79145.t1 MTR_8g027395 67.792 385 116 3 64 446 19 397 0.0 516
MS.gene79145.t1 MTR_4g045707 67.092 392 121 5 57 446 3 388 5.60e-178 503
MS.gene79145.t1 MTR_8g461160 65.306 392 132 3 57 444 1 392 3.96e-175 496
MS.gene79145.t1 MTR_8g027420 64.935 385 116 4 64 446 8 375 1.33e-171 486
MS.gene79145.t1 MTR_3g101180 64.322 398 130 4 57 444 3 398 4.73e-171 486
MS.gene79145.t1 MTR_3g048000 63.144 388 118 6 60 444 25 390 3.48e-166 473
MS.gene79145.t1 MTR_7g451890 59.553 403 157 3 48 446 2 402 6.42e-165 470
MS.gene79145.t1 MTR_4g088525 65.395 367 119 4 81 445 8 368 1.94e-164 468
MS.gene79145.t1 MTR_7g047780 60.050 403 155 3 48 446 2 402 7.16e-164 468
MS.gene79145.t1 MTR_2g046030 63.377 385 128 5 66 444 9 386 2.38e-162 463
MS.gene79145.t1 MTR_7g050810 61.183 389 139 3 66 446 20 404 3.17e-162 463
MS.gene79145.t1 MTR_2g045980 63.377 385 128 5 66 444 9 386 1.04e-161 461
MS.gene79145.t1 MTR_4g088535 63.990 386 113 6 58 441 5 366 1.28e-160 458
MS.gene79145.t1 MTR_7g050750 60.779 385 147 2 66 446 12 396 5.75e-160 457
MS.gene79145.t1 MTR_3g101130 59.948 382 150 2 66 446 10 389 8.99e-158 452
MS.gene79145.t1 MTR_3g015620 62.760 384 113 6 66 444 20 378 1.38e-150 433
MS.gene79145.t1 MTR_3g100995 75.294 255 62 1 192 446 11 264 4.99e-139 399
MS.gene79145.t1 MTR_3g102920 57.256 379 122 4 70 444 66 408 7.91e-135 394
MS.gene79145.t1 MTR_3g101200 55.285 369 140 4 78 444 45 390 1.94e-125 369
MS.gene79145.t1 MTR_3g101190 54.076 368 102 4 83 446 8 312 1.20e-123 362
MS.gene79145.t1 MTR_3g018747 68.077 260 65 3 188 444 9 253 6.29e-119 348
MS.gene79145.t1 MTR_3g100010 58.385 322 86 2 85 373 38 344 2.78e-116 344
MS.gene79145.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 1.07e-110 329
MS.gene79145.t1 MTR_3g015760 58.845 277 104 4 173 444 8 279 7.86e-100 300
MS.gene79145.t1 MTR_3g111160 67.143 210 64 2 240 446 13 220 2.16e-88 268
MS.gene79145.t1 MTR_3g101110 60.669 239 62 4 188 420 68 280 8.93e-86 264
MS.gene79145.t1 MTR_3g114310 41.250 400 208 11 64 446 21 410 5.40e-84 264
MS.gene79145.t1 MTR_3g100520 59.009 222 74 3 229 446 1 209 1.55e-83 256
MS.gene79145.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 1.60e-83 255
MS.gene79145.t1 MTR_2g046410 63.547 203 66 3 248 444 147 347 5.91e-78 246
MS.gene79145.t1 MTR_3g101020 66.486 185 37 2 262 446 1 160 1.54e-76 236
MS.gene79145.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 9.41e-62 198
MS.gene79145.t1 MTR_3g101150 61.146 157 55 2 294 444 1 157 1.26e-57 187
MS.gene79145.t1 MTR_3g102870 56.522 161 68 1 251 409 1 161 6.59e-55 181
MS.gene79145.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 2.88e-44 162
MS.gene79145.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 2.38e-24 97.1
MS.gene79145.t1 MTR_6g046890 63.636 77 25 1 79 155 14 87 7.88e-20 85.9
MS.gene79145.t1 MTR_3g101140 60.000 65 25 1 383 446 52 116 1.01e-15 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79145.t1 AT1G47710 51.111 405 189 4 44 444 18 417 2.26e-142 414
MS.gene79145.t1 AT1G47710 52.618 382 176 3 67 444 10 390 3.10e-142 412
MS.gene79145.t1 AT3G45220 47.949 390 183 7 66 443 9 390 1.87e-118 352
MS.gene79145.t1 AT2G25240 47.135 384 187 7 66 443 9 382 1.87e-113 338
MS.gene79145.t1 AT2G26390 46.512 387 189 6 66 443 9 386 5.70e-112 335
MS.gene79145.t1 AT1G62170 42.547 369 181 5 85 445 88 433 2.73e-94 291
MS.gene79145.t1 AT2G14540 44.010 384 186 6 66 443 37 397 8.45e-94 289
MS.gene79145.t1 AT1G64030 42.448 384 194 7 66 443 9 371 5.63e-91 281
MS.gene79145.t1 AT2G35580 41.645 377 183 9 81 443 18 371 4.62e-89 276
MS.gene79145.t1 AT1G62170 39.055 402 181 6 85 445 88 466 2.93e-87 274
MS.gene79145.t1 AT1G64010 45.833 216 95 4 229 443 1 195 1.27e-57 188
MS.gene79145.t1 AT1G64010 45.771 201 87 4 244 443 2 181 1.40e-51 172
MS.gene79145.t1 AT1G62160 39.560 182 87 4 266 445 60 220 9.78e-34 126
MS.gene79145.t1 AT1G63280 52.174 115 51 2 188 300 8 120 5.70e-32 118
MS.gene79145.t1 AT1G51330 50.450 111 52 2 187 294 30 140 2.29e-24 100
MS.gene79145.t1 AT1G64020 32.432 111 72 3 70 179 13 121 3.14e-12 63.9

Find 100 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69545835 MS.gene79145:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69545936 MS.gene79145:CDS
TTGTCTTCGCCTTGCTTATA+AGG 0.248930 7.2:+69545667 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69546417 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-69545431 MS.gene79145:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69546540 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69545505 MS.gene79145:CDS
GAAGAAGCAGAGAACAAATT+TGG 0.317759 7.2:+69546624 None:intergenic
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69546294 None:intergenic
CAGGTGCTCAATCCACTTGC+TGG 0.322335 7.2:-69545196 MS.gene79145:CDS
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69545506 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-69545596 MS.gene79145:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69545933 None:intergenic
TTTCTTCCAAATGCAAAAGA+TGG 0.344851 7.2:-69545622 MS.gene79145:CDS
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69546207 MS.gene79145:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69545531 MS.gene79145:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69545505 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69546432 None:intergenic
ATTCAAAAGGTGAAAGTCAT+AGG 0.388384 7.2:+69545774 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69545220 MS.gene79145:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69546174 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69546173 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69546410 MS.gene79145:CDS
TGCGGTGGCTGCAACAGCTT+CGG 0.424804 7.2:+69545336 None:intergenic
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69546160 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69545889 MS.gene79145:CDS
CCTACTTCCACTTTATCAAA+AGG 0.435106 7.2:+69545541 None:intergenic
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69545758 MS.gene79145:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69545761 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69545215 MS.gene79145:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69545888 MS.gene79145:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69546527 None:intergenic
GCATTCACTAGCAGTGGAAT+GGG 0.451094 7.2:-69545307 MS.gene79145:CDS
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:+69545250 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69546352 MS.gene79145:CDS
TGCATTCACTAGCAGTGGAA+TGG 0.472960 7.2:-69545308 MS.gene79145:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69546169 MS.gene79145:CDS
TTCTTCCAAATGCAAAAGAT+GGG 0.486946 7.2:-69545621 MS.gene79145:CDS
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+69546474 None:intergenic
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+69545595 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69546206 MS.gene79145:CDS
GTGTTGCAGTAACTCAGATT+CGG 0.491692 7.2:+69545570 None:intergenic
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69546226 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-69546361 MS.gene79145:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69546328 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69545935 MS.gene79145:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69546299 None:intergenic
CTTCGCCTTGCTTATAAGGA+AGG 0.497710 7.2:+69545671 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69546550 None:intergenic
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69546336 None:intergenic
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:-69545238 MS.gene79145:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:+69545251 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69546465 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69546327 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69545280 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69546443 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+69546379 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532609 7.2:-69545676 MS.gene79145:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69546353 MS.gene79145:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69545828 MS.gene79145:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69546302 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69546264 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69546270 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+69546470 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.547156 7.2:-69545472 MS.gene79145:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69546237 MS.gene79145:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69546241 MS.gene79145:CDS
CACTAAAATCACCCAGCAAG+TGG 0.552425 7.2:+69545184 None:intergenic
AGGTGCTCAATCCACTTGCT+GGG 0.552433 7.2:-69545195 MS.gene79145:CDS
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69546516 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69546214 MS.gene79145:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69546113 MS.gene79145:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69546253 MS.gene79145:CDS
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69546329 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+69545439 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69546238 MS.gene79145:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69546257 None:intergenic
TCTATTGCATTCACTAGCAG+TGG 0.592901 7.2:-69545313 MS.gene79145:CDS
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69546444 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69546285 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69545479 MS.gene79145:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69546225 None:intergenic
GCAGAGAACAAATTTGGCGA+TGG 0.609644 7.2:+69546630 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69546458 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-69545884 MS.gene79145:CDS
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69546608 MS.gene79145:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69546517 None:intergenic
ACTTCATGACTAGTGAGAAG+AGG 0.625893 7.2:-69545732 MS.gene79145:CDS
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69546203 MS.gene79145:CDS
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+69546485 None:intergenic
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69545916 MS.gene79145:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69546438 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69545867 MS.gene79145:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69546288 None:intergenic
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+69546488 None:intergenic
AGTGAATGCAATAGATGCGG+TGG 0.701437 7.2:+69545321 None:intergenic
TATGCTGAAGGAGCTAGGTG+TGG 0.709172 7.2:-69545467 MS.gene79145:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69546214 None:intergenic
GCTAGTGAATGCAATAGATG+CGG 0.744397 7.2:+69545318 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69545874 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69545870-69545889 MS.gene79145:CDS 10.0%
!! ACAAAAAATTTAACAAAATC+AGG + chr7.2:69545808-69545827 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69546344-69546363 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG + chr7.2:69546599-69546618 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG + chr7.2:69546600-69546619 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69545879-69545898 MS.gene79145:CDS 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69545437-69545456 MS.gene79145:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG - chr7.2:69546609-69546628 MS.gene79145:CDS 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69546342-69546361 MS.gene79145:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69546345-69546364 None:intergenic 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69545777-69545796 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69545776-69545795 None:intergenic 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69546041-69546060 MS.gene79145:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69546458-69546477 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69546153-69546172 MS.gene79145:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69545300-69545319 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69545958-69545977 MS.gene79145:intron 30.0%
ATTCAAAAGGTGAAAGTCAT+AGG + chr7.2:69546076-69546095 None:intergenic 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69545433-69545452 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69545912-69545931 MS.gene79145:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69546089-69546108 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69545911-69545930 MS.gene79145:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69545959-69545978 MS.gene79145:intron 30.0%
TTCTTCCAAATGCAAAAGAT+GGG - chr7.2:69546226-69546245 MS.gene79145:CDS 30.0%
TTTCTTCCAAATGCAAAAGA+TGG - chr7.2:69546225-69546244 MS.gene79145:CDS 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69546089-69546108 MS.gene79145:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69545278-69545297 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69545775-69545794 None:intergenic 30.0%
! TATGACTTTCACCTTTTGAA+TGG - chr7.2:69546075-69546094 MS.gene79145:intron 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69545418-69545437 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69545310-69545329 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69546632-69546651 MS.gene79145:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69546627-69546646 MS.gene79145:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69545917-69545936 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69546416-69546435 MS.gene79145:CDS 35.0%
CCTACTTCCACTTTATCAAA+AGG + chr7.2:69546309-69546328 None:intergenic 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69545676-69545695 None:intergenic 35.0%
GAAGAAGCAGAGAACAAATT+TGG + chr7.2:69545226-69545245 None:intergenic 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69545678-69545697 MS.gene79145:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69546368-69546387 MS.gene79145:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69545677-69545696 None:intergenic 35.0%
! CAAGCTTCCTTTTGATAAAG+TGG - chr7.2:69546299-69546318 MS.gene79145:CDS 35.0%
! CCTTTTGATAAAGTGGAAGT+AGG - chr7.2:69546306-69546325 MS.gene79145:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69545285-69545304 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69545690-69545709 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69545522-69545541 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:69546418-69546437 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69545734-69545753 MS.gene79145:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69546316-69546335 MS.gene79145:CDS 40.0%
ACTTCATGACTAGTGAGAAG+AGG - chr7.2:69546115-69546134 MS.gene79145:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69545333-69545352 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:69545471-69545490 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69545641-69545660 MS.gene79145:CDS 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69546012-69546031 MS.gene79145:intron 40.0%
GCTAGTGAATGCAATAGATG+CGG + chr7.2:69546532-69546551 None:intergenic 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69545594-69545613 MS.gene79145:CDS 40.0%
GTGTTGCAGTAACTCAGATT+CGG + chr7.2:69546280-69546299 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69545640-69545659 MS.gene79145:CDS 40.0%
TCTATTGCATTCACTAGCAG+TGG - chr7.2:69546534-69546553 MS.gene79145:CDS 40.0%
TTGTCTTCGCCTTGCTTATA+AGG + chr7.2:69546183-69546202 None:intergenic 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69545601-69545620 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69545523-69545542 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:69546402-69546421 MS.gene79145:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69545521-69545540 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:69546399-69546418 MS.gene79145:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69545407-69545426 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69545406-69545425 None:intergenic 45.0%
AGTGAATGCAATAGATGCGG+TGG + chr7.2:69546529-69546548 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69545636-69545655 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69545633-69545652 MS.gene79145:CDS 45.0%
CTTCGCCTTGCTTATAAGGA+AGG + chr7.2:69546179-69546198 None:intergenic 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69545334-69545353 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69545323-69545342 None:intergenic 45.0%
GCAGAGAACAAATTTGGCGA+TGG + chr7.2:69545220-69545239 None:intergenic 45.0%
GCATTCACTAGCAGTGGAAT+GGG - chr7.2:69546540-69546559 MS.gene79145:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69546570-69546589 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69545385-69545404 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69545412-69545431 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:69546411-69546430 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69546375-69546394 MS.gene79145:CDS 45.0%
TGCATTCACTAGCAGTGGAA+TGG - chr7.2:69546539-69546558 MS.gene79145:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69545931-69545950 MS.gene79145:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69546019-69546038 MS.gene79145:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69546171-69546190 MS.gene79145:CDS 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69545551-69545570 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69545593-69545612 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69545963-69545982 MS.gene79145:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69545556-69545575 None:intergenic 45.0%
AGGTGCTCAATCCACTTGCT+GGG - chr7.2:69546652-69546671 MS.gene79145:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69545239-69545258 MS.gene79145:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69546251-69546270 MS.gene79145:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69546255-69546274 None:intergenic 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69545980-69545999 MS.gene79145:intron 50.0%
TATGCTGAAGGAGCTAGGTG+TGG - chr7.2:69546380-69546399 MS.gene79145:CDS 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:69545365-69545384 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69545392-69545411 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69545644-69545663 MS.gene79145:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69545586-69545605 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69545548-69545567 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69546234-69546253 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69545562-69545581 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69545565-69545584 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69545976-69545995 None:intergenic 55.0%
CAGGTGCTCAATCCACTTGC+TGG - chr7.2:69546651-69546670 MS.gene79145:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:69545362-69545381 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69545380-69545399 None:intergenic 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:69545376-69545395 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:69545486-69545505 MS.gene79145:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69545514-69545533 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69545625-69545644 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69545606-69545625 MS.gene79145:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69545580-69545599 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69546514-69546533 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69545495-69545514 MS.gene79145:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69545610-69545629 MS.gene79145:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69545609-69545628 MS.gene79145:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69545624-69545643 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69545494-69545513 MS.gene79145:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69545192 69546677 69545192 ID=MS.gene79145
chr7.2 mRNA 69545192 69546677 69545192 ID=MS.gene79145.t1;Parent=MS.gene79145
chr7.2 exon 69546114 69546677 69546114 ID=MS.gene79145.t1.exon1;Parent=MS.gene79145.t1
chr7.2 CDS 69546114 69546677 69546114 ID=cds.MS.gene79145.t1;Parent=MS.gene79145.t1
chr7.2 exon 69545192 69545968 69545192 ID=MS.gene79145.t1.exon2;Parent=MS.gene79145.t1
chr7.2 CDS 69545192 69545968 69545192 ID=cds.MS.gene79145.t1;Parent=MS.gene79145.t1
Gene Sequence

>MS.gene79145

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAATTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGACTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAGGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGCGAAGACAAGCGTCAATTTACTATGTACTTTTTTCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGCAACACAAGCTTCCTTTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGTGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGACACCGAAGCTGTTGCAGCCACCGCATCTATTGCATTCACTAGCAGTGGAATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCACTTGCTGGGTGA
Protein sequence

>MS.gene79145.t1

MRFSRKTIAIAKFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKRQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLQHKLPFDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEDTEAVAATASIAFTSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG