AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79146

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79146.t1 MTR_3g101030 80.941 425 64 3 39 446 5 429 0.0 677
MS.gene79146.t1 MTR_3g101050 72.545 448 69 7 1 445 1 397 0.0 600
MS.gene79146.t1 MTR_3g101010 81.201 383 68 2 66 446 9 389 0.0 600
MS.gene79146.t1 MTR_3g018740 69.974 383 108 3 65 444 8 386 0.0 519
MS.gene79146.t1 MTR_8g027395 68.052 385 115 3 64 446 19 397 0.0 518
MS.gene79146.t1 MTR_4g045707 67.347 392 120 5 57 446 3 388 3.85e-179 506
MS.gene79146.t1 MTR_8g461160 65.561 392 131 3 57 444 1 392 3.01e-176 499
MS.gene79146.t1 MTR_8g027420 65.195 385 115 4 64 446 8 375 9.67e-173 489
MS.gene79146.t1 MTR_3g101180 64.322 398 130 4 57 444 3 398 1.73e-171 487
MS.gene79146.t1 MTR_3g048000 63.402 388 117 6 60 444 25 390 1.39e-167 476
MS.gene79146.t1 MTR_7g451890 59.801 403 156 3 48 446 2 402 4.43e-166 473
MS.gene79146.t1 MTR_4g088525 65.668 367 118 4 81 445 8 368 1.59e-165 470
MS.gene79146.t1 MTR_7g047780 60.298 403 154 3 48 446 2 402 5.10e-165 470
MS.gene79146.t1 MTR_2g046030 63.636 385 127 5 66 444 9 386 2.09e-163 466
MS.gene79146.t1 MTR_7g050810 61.440 389 138 3 66 446 20 404 3.17e-163 466
MS.gene79146.t1 MTR_2g045980 63.636 385 127 5 66 444 9 386 7.91e-163 464
MS.gene79146.t1 MTR_4g088535 64.249 386 112 6 58 441 5 366 7.23e-162 462
MS.gene79146.t1 MTR_7g050750 61.039 385 146 2 66 446 12 396 3.02e-161 461
MS.gene79146.t1 MTR_3g101130 60.471 382 148 2 66 446 10 389 4.10e-159 455
MS.gene79146.t1 MTR_3g015620 61.198 384 119 6 66 444 20 378 1.44e-150 433
MS.gene79146.t1 MTR_3g100995 76.078 255 60 1 192 446 11 264 1.44e-140 403
MS.gene79146.t1 MTR_3g102920 57.784 379 120 4 70 444 66 408 1.96e-136 398
MS.gene79146.t1 MTR_3g101200 55.556 369 139 4 78 444 45 390 1.05e-126 372
MS.gene79146.t1 MTR_3g101190 54.076 368 102 4 83 446 8 312 1.15e-123 362
MS.gene79146.t1 MTR_3g018747 68.462 260 64 3 188 444 9 253 3.29e-120 351
MS.gene79146.t1 MTR_3g100010 58.075 322 87 2 85 373 38 344 1.00e-115 343
MS.gene79146.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 9.78e-111 329
MS.gene79146.t1 MTR_3g015760 58.845 277 104 4 173 444 8 279 6.61e-100 300
MS.gene79146.t1 MTR_3g111160 68.095 210 62 2 240 446 13 220 1.06e-89 272
MS.gene79146.t1 MTR_3g101110 60.669 239 62 4 188 420 68 280 1.91e-86 266
MS.gene79146.t1 MTR_3g100520 59.910 222 72 3 229 446 1 209 6.25e-85 259
MS.gene79146.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 1.11e-83 256
MS.gene79146.t1 MTR_3g114310 41.250 400 208 11 64 446 21 410 1.67e-83 263
MS.gene79146.t1 MTR_2g046410 64.039 203 65 3 248 444 147 347 5.05e-79 249
MS.gene79146.t1 MTR_3g101020 67.568 185 35 2 262 446 1 160 5.18e-78 239
MS.gene79146.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 8.19e-62 198
MS.gene79146.t1 MTR_3g101150 61.783 157 54 2 294 444 1 157 9.81e-59 190
MS.gene79146.t1 MTR_3g102870 57.143 161 67 1 251 409 1 161 3.86e-56 184
MS.gene79146.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 2.60e-44 162
MS.gene79146.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 2.35e-24 97.1
MS.gene79146.t1 MTR_6g046890 63.636 77 25 1 79 155 14 87 8.04e-20 85.9
MS.gene79146.t1 MTR_3g101140 61.538 65 24 1 383 446 52 116 8.42e-17 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79146.t1 AT1G47710 51.605 405 187 4 44 444 18 417 9.71e-144 417
MS.gene79146.t1 AT1G47710 53.141 382 174 3 67 444 10 390 1.39e-143 416
MS.gene79146.t1 AT3G45220 48.462 390 181 7 66 443 9 390 5.79e-120 355
MS.gene79146.t1 AT2G25240 47.396 384 186 7 66 443 9 382 8.78e-115 342
MS.gene79146.t1 AT2G26390 46.770 387 188 6 66 443 9 386 2.83e-113 338
MS.gene79146.t1 AT1G62170 43.089 369 179 5 85 445 88 433 8.15e-96 295
MS.gene79146.t1 AT2G14540 44.531 384 184 6 66 443 37 397 3.76e-94 290
MS.gene79146.t1 AT1G64030 42.708 384 193 7 66 443 9 371 5.45e-91 281
MS.gene79146.t1 AT2G35580 41.910 377 182 9 81 443 18 371 2.42e-89 276
MS.gene79146.t1 AT1G62170 39.552 402 179 6 85 445 88 466 7.14e-89 278
MS.gene79146.t1 AT1G64010 46.296 216 94 4 229 443 1 195 8.72e-59 191
MS.gene79146.t1 AT1G64010 46.269 201 86 4 244 443 2 181 9.92e-53 175
MS.gene79146.t1 AT1G62160 40.110 182 86 4 266 445 60 220 2.99e-34 127
MS.gene79146.t1 AT1G63280 52.174 115 51 2 188 300 8 120 5.20e-32 118
MS.gene79146.t1 AT1G51330 49.550 111 53 2 187 294 30 140 7.98e-24 98.6
MS.gene79146.t1 AT1G64020 32.432 111 72 3 70 179 13 121 3.18e-12 63.9

Find 101 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69509910 MS.gene79146:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69510011 MS.gene79146:CDS
TTGTCTTCGCCTTGCTTATA+AGG 0.248930 7.2:+69509742 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69510491 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-69509506 MS.gene79146:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69510614 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69509580 MS.gene79146:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69510368 None:intergenic
CAGGTGCTCAATCCACTTGC+TGG 0.322335 7.2:-69509271 MS.gene79146:CDS
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69509581 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-69509671 MS.gene79146:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69510008 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69510281 MS.gene79146:CDS
GAAGAAGCAGAGAACAAAAT+TGG 0.347022 7.2:+69510698 None:intergenic
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69509606 MS.gene79146:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69509580 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69510506 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.389726 7.2:+69509411 None:intergenic
GGCAGCCCATCTTTCGCATT+TGG 0.390126 7.2:+69509691 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+69509849 None:intergenic
TTTCTTCCAAATGCGAAAGA+TGG 0.396268 7.2:-69509697 MS.gene79146:CDS
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69509295 MS.gene79146:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69510248 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69510247 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69510484 MS.gene79146:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69510234 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69509964 MS.gene79146:CDS
CCTACTTCCACTTTATCAAA+AGG 0.435106 7.2:+69509616 None:intergenic
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69509833 MS.gene79146:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69509836 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69509290 MS.gene79146:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69509963 MS.gene79146:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69510601 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69509436 MS.gene79146:CDS
GCATTCACTAGCAGTGGAAT+GGG 0.451094 7.2:-69509382 MS.gene79146:CDS
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:+69509325 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69510426 MS.gene79146:CDS
TGCATTCACTAGCAGTGGAA+TGG 0.472960 7.2:-69509383 MS.gene79146:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69510243 MS.gene79146:CDS
TTCTTCCAAATGCGAAAGAT+GGG 0.481216 7.2:-69509696 MS.gene79146:CDS
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+69510548 None:intergenic
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+69509670 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69510280 MS.gene79146:CDS
GTGTTGCAGTAACTCAGATT+CGG 0.491692 7.2:+69509645 None:intergenic
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69510300 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-69510435 MS.gene79146:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69510402 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69510010 MS.gene79146:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69510373 None:intergenic
CTTCGCCTTGCTTATAAGGA+AGG 0.497710 7.2:+69509746 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69510624 None:intergenic
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69510410 None:intergenic
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:-69509313 MS.gene79146:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:+69509326 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69510539 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69510401 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69509355 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69510517 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+69510453 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532609 7.2:-69509751 MS.gene79146:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69510427 MS.gene79146:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69509903 MS.gene79146:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69510376 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69510338 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69510344 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+69510544 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.547156 7.2:-69509547 MS.gene79146:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69510311 MS.gene79146:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69510315 MS.gene79146:CDS
CACTAAAATCACCCAGCAAG+TGG 0.552425 7.2:+69509259 None:intergenic
AGGTGCTCAATCCACTTGCT+GGG 0.552433 7.2:-69509270 MS.gene79146:CDS
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69510590 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69510288 MS.gene79146:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69510187 MS.gene79146:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69510327 MS.gene79146:CDS
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69510403 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+69509514 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69510312 MS.gene79146:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69510331 None:intergenic
TCTATTGCATTCACTAGCAG+TGG 0.592901 7.2:-69509388 MS.gene79146:CDS
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69510518 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69510359 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69509554 MS.gene79146:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69510299 None:intergenic
GCAGAGAACAAAATTGGCGA+TGG 0.606690 7.2:+69510704 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69510532 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-69509959 MS.gene79146:CDS
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69510682 MS.gene79146:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69510591 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69510277 MS.gene79146:CDS
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+69510559 None:intergenic
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69509991 MS.gene79146:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69510512 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69509942 MS.gene79146:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69510362 None:intergenic
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+69510562 None:intergenic
AGTGAATGCAATAGATGCGG+TGG 0.701437 7.2:+69509396 None:intergenic
TATGCTGAAGGAGCTAGGTG+TGG 0.709172 7.2:-69509542 MS.gene79146:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69510288 None:intergenic
GCTAGTGAATGCAATAGATG+CGG 0.744397 7.2:+69509393 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69509949 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69509944-69509963 MS.gene79146:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69509883-69509902 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69510418-69510437 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG + chr7.2:69510673-69510692 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG + chr7.2:69510674-69510693 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69509953-69509972 MS.gene79146:CDS 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69509512-69509531 MS.gene79146:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG - chr7.2:69510683-69510702 MS.gene79146:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:69510150-69510169 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69510416-69510435 MS.gene79146:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69510419-69510438 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69510560-69510579 MS.gene79146:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69509852-69509871 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69509851-69509870 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:69510149-69510168 MS.gene79146:intron 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69510115-69510134 MS.gene79146:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69510532-69510551 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69510227-69510246 MS.gene79146:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69509375-69509394 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69510032-69510051 MS.gene79146:intron 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69509508-69509527 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69509986-69510005 MS.gene79146:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69510163-69510182 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69509985-69510004 MS.gene79146:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69510033-69510052 MS.gene79146:intron 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69510163-69510182 MS.gene79146:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69509353-69509372 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69509850-69509869 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69509493-69509512 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69509385-69509404 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69510706-69510725 MS.gene79146:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69510701-69510720 MS.gene79146:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69509991-69510010 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69510490-69510509 MS.gene79146:CDS 35.0%
CCTACTTCCACTTTATCAAA+AGG + chr7.2:69510383-69510402 None:intergenic 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69509751-69509770 None:intergenic 35.0%
GAAGAAGCAGAGAACAAAAT+TGG + chr7.2:69509301-69509320 None:intergenic 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69509753-69509772 MS.gene79146:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69510442-69510461 MS.gene79146:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69509752-69509771 None:intergenic 35.0%
TTCTTCCAAATGCGAAAGAT+GGG - chr7.2:69510300-69510319 MS.gene79146:CDS 35.0%
TTTCTTCCAAATGCGAAAGA+TGG - chr7.2:69510299-69510318 MS.gene79146:CDS 35.0%
! CAAGCTTCCTTTTGATAAAG+TGG - chr7.2:69510373-69510392 MS.gene79146:CDS 35.0%
! CCTTTTGATAAAGTGGAAGT+AGG - chr7.2:69510380-69510399 MS.gene79146:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69509360-69509379 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69509765-69509784 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69509597-69509616 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:69510492-69510511 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69509809-69509828 MS.gene79146:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69510390-69510409 MS.gene79146:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69509408-69509427 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:69509546-69509565 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69509716-69509735 MS.gene79146:CDS 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69510086-69510105 MS.gene79146:intron 40.0%
GCTAGTGAATGCAATAGATG+CGG + chr7.2:69510606-69510625 None:intergenic 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69509669-69509688 MS.gene79146:CDS 40.0%
GTGTTGCAGTAACTCAGATT+CGG + chr7.2:69510354-69510373 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69509715-69509734 MS.gene79146:CDS 40.0%
TCTATTGCATTCACTAGCAG+TGG - chr7.2:69510608-69510627 MS.gene79146:CDS 40.0%
TTGTCTTCGCCTTGCTTATA+AGG + chr7.2:69510257-69510276 None:intergenic 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69509676-69509695 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69509598-69509617 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:69510476-69510495 MS.gene79146:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69509596-69509615 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:69510473-69510492 MS.gene79146:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69509482-69509501 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69509481-69509500 None:intergenic 45.0%
AGTGAATGCAATAGATGCGG+TGG + chr7.2:69510603-69510622 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69509711-69509730 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69509708-69509727 MS.gene79146:CDS 45.0%
CTTCGCCTTGCTTATAAGGA+AGG + chr7.2:69510253-69510272 None:intergenic 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69509409-69509428 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69509398-69509417 None:intergenic 45.0%
GCAGAGAACAAAATTGGCGA+TGG + chr7.2:69509295-69509314 None:intergenic 45.0%
GCATTCACTAGCAGTGGAAT+GGG - chr7.2:69510614-69510633 MS.gene79146:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69510644-69510663 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69509460-69509479 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69509487-69509506 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:69510485-69510504 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69510449-69510468 MS.gene79146:CDS 45.0%
TGCATTCACTAGCAGTGGAA+TGG - chr7.2:69510613-69510632 MS.gene79146:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69510005-69510024 MS.gene79146:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69510093-69510112 MS.gene79146:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69510245-69510264 MS.gene79146:CDS 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69509626-69509645 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69509668-69509687 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69510037-69510056 MS.gene79146:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69509631-69509650 None:intergenic 45.0%
AGGTGCTCAATCCACTTGCT+GGG - chr7.2:69510726-69510745 MS.gene79146:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69509314-69509333 MS.gene79146:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69510325-69510344 MS.gene79146:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69510329-69510348 None:intergenic 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69510054-69510073 MS.gene79146:intron 50.0%
TATGCTGAAGGAGCTAGGTG+TGG - chr7.2:69510454-69510473 MS.gene79146:CDS 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:69509440-69509459 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69509467-69509486 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69509719-69509738 MS.gene79146:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69509661-69509680 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69509623-69509642 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69509637-69509656 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69509640-69509659 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69510050-69510069 None:intergenic 55.0%
CAGGTGCTCAATCCACTTGC+TGG - chr7.2:69510725-69510744 MS.gene79146:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:69509437-69509456 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69509455-69509474 None:intergenic 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:69509451-69509470 None:intergenic 55.0%
GGCAGCCCATCTTTCGCATT+TGG + chr7.2:69510308-69510327 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:69509561-69509580 MS.gene79146:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69509589-69509608 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69509700-69509719 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69509681-69509700 MS.gene79146:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69509655-69509674 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69510588-69510607 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69509570-69509589 MS.gene79146:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69509685-69509704 MS.gene79146:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69509684-69509703 MS.gene79146:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69509699-69509718 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69509569-69509588 MS.gene79146:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69509267 69510751 69509267 ID=MS.gene79146
chr7.2 mRNA 69509267 69510751 69509267 ID=MS.gene79146.t1;Parent=MS.gene79146
chr7.2 exon 69510188 69510751 69510188 ID=MS.gene79146.t1.exon1;Parent=MS.gene79146.t1
chr7.2 CDS 69510188 69510751 69510188 ID=cds.MS.gene79146.t1;Parent=MS.gene79146.t1
chr7.2 exon 69509267 69510043 69509267 ID=MS.gene79146.t1.exon2;Parent=MS.gene79146.t1
chr7.2 CDS 69509267 69510043 69509267 ID=cds.MS.gene79146.t1;Parent=MS.gene79146.t1
Gene Sequence

>MS.gene79146

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAATTTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGCGAAGACAAGCGTCAATTTACTATGTACTTTTTTCTTCCAAATGCGAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGCAACACAAGCTTCCTTTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGTGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTATTGCATTCACTAGCAGTGGAATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCACTTGCTGGGTGA
Protein sequence

>MS.gene79146.t1

MRFSRKTIAIANFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLQHKLPFDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASIAFTSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG