AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79148

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79148.t1 MTR_3g101030 80.471 425 66 3 39 446 5 429 0.0 675
MS.gene79148.t1 MTR_3g101050 72.444 450 66 8 1 445 1 397 0.0 595
MS.gene79148.t1 MTR_3g101010 80.679 383 70 2 66 446 9 389 0.0 594
MS.gene79148.t1 MTR_3g018740 69.974 383 108 3 65 444 8 386 0.0 521
MS.gene79148.t1 MTR_8g027395 67.532 385 117 3 64 446 19 397 0.0 512
MS.gene79148.t1 MTR_4g045707 66.921 393 120 5 57 446 3 388 9.57e-178 502
MS.gene79148.t1 MTR_8g461160 65.561 392 131 2 57 444 1 392 1.16e-176 499
MS.gene79148.t1 MTR_3g101180 64.070 398 131 4 57 444 3 398 2.04e-171 486
MS.gene79148.t1 MTR_8g027420 64.935 385 116 4 64 446 8 375 5.57e-171 484
MS.gene79148.t1 MTR_3g048000 63.144 388 118 5 60 444 25 390 4.01e-166 473
MS.gene79148.t1 MTR_7g451890 59.553 403 157 3 48 446 2 402 8.81e-165 470
MS.gene79148.t1 MTR_4g088525 64.850 367 121 3 81 445 8 368 6.06e-163 464
MS.gene79148.t1 MTR_2g046030 63.636 385 127 5 66 444 9 386 1.19e-162 464
MS.gene79148.t1 MTR_7g047780 59.553 403 157 3 48 446 2 402 3.16e-162 463
MS.gene79148.t1 MTR_2g045980 63.636 385 127 5 66 444 9 386 3.90e-162 462
MS.gene79148.t1 MTR_7g050810 60.925 389 140 3 66 446 20 404 6.11e-162 462
MS.gene79148.t1 MTR_4g088535 63.990 386 113 6 58 441 5 366 2.54e-160 458
MS.gene79148.t1 MTR_7g050750 60.519 385 148 2 66 446 12 396 1.38e-159 456
MS.gene79148.t1 MTR_3g101130 59.948 382 150 2 66 446 10 389 5.38e-158 452
MS.gene79148.t1 MTR_3g015620 60.677 384 121 6 66 444 20 378 1.21e-148 428
MS.gene79148.t1 MTR_3g100995 75.686 255 61 1 192 446 11 264 1.57e-138 398
MS.gene79148.t1 MTR_3g102920 58.421 380 116 6 70 444 66 408 1.38e-136 398
MS.gene79148.t1 MTR_3g101200 55.014 369 141 4 78 444 45 390 1.60e-124 367
MS.gene79148.t1 MTR_3g101190 54.076 368 102 4 83 446 8 312 5.23e-123 360
MS.gene79148.t1 MTR_3g018747 69.231 260 62 3 188 444 9 253 1.09e-121 355
MS.gene79148.t1 MTR_3g100010 57.764 322 88 2 85 373 38 344 6.49e-115 341
MS.gene79148.t1 MTR_7g050830 54.693 309 109 2 68 356 22 319 1.14e-109 327
MS.gene79148.t1 MTR_3g015760 58.123 277 106 4 173 444 8 279 6.56e-98 295
MS.gene79148.t1 MTR_3g111160 68.571 210 61 2 240 446 13 220 4.38e-90 273
MS.gene79148.t1 MTR_3g100520 60.811 222 70 3 229 446 1 209 2.76e-86 263
MS.gene79148.t1 MTR_3g101110 60.251 239 63 4 188 420 68 280 8.19e-86 264
MS.gene79148.t1 MTR_3g114310 42.250 400 204 12 64 446 21 410 7.33e-85 266
MS.gene79148.t1 MTR_3g099970 66.154 195 49 2 188 381 20 198 2.22e-82 252
MS.gene79148.t1 MTR_2g046410 64.532 203 64 3 248 444 147 347 2.35e-79 250
MS.gene79148.t1 MTR_3g101020 67.027 185 36 2 262 446 1 160 1.02e-76 236
MS.gene79148.t1 MTR_3g111150 58.192 177 48 2 66 242 3 153 1.91e-60 194
MS.gene79148.t1 MTR_3g101150 61.783 157 54 2 294 444 1 157 9.11e-59 190
MS.gene79148.t1 MTR_3g102870 57.143 161 67 1 251 409 1 161 9.25e-56 183
MS.gene79148.t1 MTR_3g100990 58.108 148 59 2 66 213 9 153 8.37e-44 160
MS.gene79148.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 2.11e-24 97.1
MS.gene79148.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 7.80e-20 85.9
MS.gene79148.t1 MTR_3g101140 63.077 65 23 1 383 446 52 116 1.31e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79148.t1 AT1G47710 53.141 382 174 3 67 444 10 390 3.06e-142 412
MS.gene79148.t1 AT1G47710 51.605 405 187 4 44 444 18 417 5.76e-142 412
MS.gene79148.t1 AT3G45220 48.072 389 184 6 66 443 9 390 2.68e-119 354
MS.gene79148.t1 AT2G25240 47.656 384 185 7 66 443 9 382 2.46e-114 341
MS.gene79148.t1 AT2G26390 46.770 387 188 6 66 443 9 386 1.93e-112 336
MS.gene79148.t1 AT1G62170 42.779 367 183 4 85 445 88 433 5.32e-95 293
MS.gene79148.t1 AT2G14540 44.010 384 186 6 66 443 37 397 2.58e-92 285
MS.gene79148.t1 AT1G64030 42.708 384 193 7 66 443 9 371 7.45e-91 281
MS.gene79148.t1 AT2G35580 42.359 373 186 8 81 443 18 371 5.53e-90 278
MS.gene79148.t1 AT1G62170 39.250 400 183 5 85 445 88 466 3.04e-88 276
MS.gene79148.t1 AT1G64010 47.222 216 92 4 229 443 1 195 5.29e-60 195
MS.gene79148.t1 AT1G64010 46.766 201 85 4 244 443 2 181 2.19e-53 177
MS.gene79148.t1 AT1G62160 40.110 182 86 4 266 445 60 220 1.43e-34 129
MS.gene79148.t1 AT1G63280 52.174 115 51 2 188 300 8 120 2.87e-31 116
MS.gene79148.t1 AT1G51330 49.550 111 53 2 187 294 30 140 3.77e-23 97.1
MS.gene79148.t1 AT1G64020 32.432 111 72 3 70 179 13 121 4.33e-12 63.5

Find 103 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTTTCGTCGATGGTTTA+TGG 0.158405 7.2:-69448458 MS.gene79148:CDS
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69448087 MS.gene79148:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69448188 MS.gene79148:CDS
TTGTCTTCGCCTTGCTTATA+AGG 0.248930 7.2:+69447919 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69448668 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-69447683 MS.gene79148:CDS
ATCTTTCGTCGATGGTTTAT+GGG 0.279350 7.2:-69448457 MS.gene79148:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69448791 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69447757 MS.gene79148:CDS
TTAAAGAACTTCTTCCTCTA+TGG 0.306207 7.2:-69448140 MS.gene79148:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69447448 MS.gene79148:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69448545 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69447758 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.335053 7.2:-69447848 MS.gene79148:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69448185 None:intergenic
GAAGAAGCAGAGAACAAAAT+TGG 0.347022 7.2:+69448875 None:intergenic
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69447783 MS.gene79148:CDS
TTTCTTCCAAATGCAAAAGA+TGG 0.370490 7.2:-69447874 MS.gene79148:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69447757 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69448683 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+69447588 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+69448026 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69447472 MS.gene79148:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69448425 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69448424 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69448661 MS.gene79148:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69448411 None:intergenic
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69448010 MS.gene79148:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69448013 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69447467 MS.gene79148:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-69447800 MS.gene79148:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69448778 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69447613 MS.gene79148:CDS
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:+69447502 None:intergenic
GAATGATAAGTTTGATGCTT+CGG 0.462529 7.2:-69448058 MS.gene79148:CDS
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69448603 MS.gene79148:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69448420 MS.gene79148:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.482981 7.2:+69447847 None:intergenic
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+69448725 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.489339 7.2:-69448465 MS.gene79148:CDS
GTGTTGCAGTAACTCAGATT+CGG 0.491692 7.2:+69447822 None:intergenic
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69448477 None:intergenic
TTCTTCCAAATGCAAAAGAT+GGG 0.493850 7.2:-69447873 MS.gene79148:CDS
GTCCTAAGCATCATCGCTGC+TGG 0.494673 7.2:-69448612 MS.gene79148:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69448579 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69448187 MS.gene79148:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69448550 None:intergenic
CTTCGCCTTGCTTATAAGGA+AGG 0.497710 7.2:+69447923 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69448801 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69447447 MS.gene79148:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69448587 None:intergenic
AGCCAGCAGCGATGATGCTT+AGG 0.507534 7.2:+69448610 None:intergenic
TGCAGTCAGTAGCAGTGGCA+TGG 0.511284 7.2:-69447560 MS.gene79148:CDS
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:-69447490 MS.gene79148:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:+69447503 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69448716 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69448578 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69447532 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69448694 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532609 7.2:-69447928 MS.gene79148:CDS
GCAGTCAGTAGCAGTGGCAT+GGG 0.532869 7.2:-69447559 MS.gene79148:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69448604 MS.gene79148:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69448080 MS.gene79148:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69448553 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69448515 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69448521 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+69448721 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.547156 7.2:-69447724 MS.gene79148:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69448488 MS.gene79148:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69448492 MS.gene79148:CDS
AGGACAACTTGTAGTGAAAG+TGG 0.550891 7.2:+69448630 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69447793 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69448767 None:intergenic
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69447793 MS.gene79148:CDS
TTTCGTCGATGGTTTATGGG+TGG 0.570484 7.2:-69448454 MS.gene79148:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69448364 MS.gene79148:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69448504 MS.gene79148:CDS
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69448580 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+69447691 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69447436 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69448489 MS.gene79148:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69448508 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69448695 None:intergenic
AGAACTTCTTCCTCTATGGT+CGG 0.601665 7.2:-69448136 MS.gene79148:CDS
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69448536 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69447731 MS.gene79148:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69448476 None:intergenic
GCAGAGAACAAAATTGGCGA+TGG 0.606690 7.2:+69448881 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69448709 None:intergenic
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69448859 MS.gene79148:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69448768 None:intergenic
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+69448736 None:intergenic
TCTGATGCAGTCAGTAGCAG+TGG 0.636122 7.2:-69447565 MS.gene79148:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69448168 MS.gene79148:CDS
ACTGACTGCATCAGATGCGG+TGG 0.641619 7.2:+69447573 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.653287 7.2:-69448119 MS.gene79148:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69448689 None:intergenic
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69448539 None:intergenic
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+69448739 None:intergenic
GCTACTGACTGCATCAGATG+CGG 0.675085 7.2:+69447570 None:intergenic
AAGTTGTCGACCGACCATAG+AGG 0.689211 7.2:+69448126 None:intergenic
CCATCGACGAAAGATAGATG+AGG 0.702172 7.2:+69448465 None:intergenic
TATGCTGAAGGAGCTAGGTG+TGG 0.709172 7.2:-69447719 MS.gene79148:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69448060-69448079 None:intergenic 15.0%
!!! ATTGATTTTAAGTTTTGATA+TGG - chr7.2:69448121-69448140 MS.gene79148:CDS 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69448595-69448614 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG + chr7.2:69448850-69448869 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG + chr7.2:69448851-69448870 None:intergenic 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69447689-69447708 MS.gene79148:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG - chr7.2:69448860-69448879 MS.gene79148:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:69448327-69448346 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69448593-69448612 MS.gene79148:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69448596-69448615 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69448737-69448756 MS.gene79148:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69448029-69448048 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69448028-69448047 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:69448326-69448345 MS.gene79148:intron 25.0%
!!! AAGTTTTGATATGGTTTGAA+AGG - chr7.2:69448130-69448149 MS.gene79148:CDS 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69448709-69448728 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69448404-69448423 MS.gene79148:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69447552-69447571 None:intergenic 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69447685-69447704 None:intergenic 30.0%
GAATGATAAGTTTGATGCTT+CGG - chr7.2:69448292-69448311 MS.gene79148:intron 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69448163-69448182 MS.gene79148:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69448340-69448359 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69448162-69448181 MS.gene79148:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+TGG - chr7.2:69448210-69448229 MS.gene79148:intron 30.0%
TTCTTCCAAATGCAAAAGAT+GGG - chr7.2:69448477-69448496 MS.gene79148:CDS 30.0%
TTTCTTCCAAATGCAAAAGA+TGG - chr7.2:69448476-69448495 MS.gene79148:CDS 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69448340-69448359 MS.gene79148:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69447530-69447549 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69448027-69448046 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69447670-69447689 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69447562-69447581 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69448883-69448902 MS.gene79148:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69448878-69448897 MS.gene79148:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69448168-69448187 None:intergenic 35.0%
ATCTTTCGTCGATGGTTTAT+GGG - chr7.2:69447893-69447912 MS.gene79148:CDS 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69448667-69448686 MS.gene79148:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69447928-69447947 None:intergenic 35.0%
GAAGAAGCAGAGAACAAAAT+TGG + chr7.2:69447478-69447497 None:intergenic 35.0%
TATCTTTCGTCGATGGTTTA+TGG - chr7.2:69447892-69447911 MS.gene79148:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69447930-69447949 MS.gene79148:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69448619-69448638 MS.gene79148:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69447929-69447948 None:intergenic 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69447537-69447556 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69447942-69447961 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69447774-69447793 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:69448669-69448688 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69447986-69448005 MS.gene79148:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69448567-69448586 MS.gene79148:CDS 40.0%
AGAACTTCTTCCTCTATGGT+CGG - chr7.2:69448214-69448233 MS.gene79148:intron 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69447585-69447604 None:intergenic 40.0%
AGGACAACTTGTAGTGAAAG+TGG + chr7.2:69447723-69447742 None:intergenic 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69448550-69448569 MS.gene79148:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69448560-69448579 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69448557-69448576 MS.gene79148:CDS 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69448263-69448282 MS.gene79148:intron 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69447846-69447865 MS.gene79148:CDS 40.0%
GTGTTGCAGTAACTCAGATT+CGG + chr7.2:69448531-69448550 None:intergenic 40.0%
TTGTCTTCGCCTTGCTTATA+AGG + chr7.2:69448434-69448453 None:intergenic 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69447853-69447872 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69447775-69447794 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:69448653-69448672 MS.gene79148:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69447773-69447792 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:69448650-69448669 MS.gene79148:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69447659-69447678 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69447658-69447677 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69447888-69447907 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69447885-69447904 MS.gene79148:CDS 45.0%
CTTCGCCTTGCTTATAAGGA+AGG + chr7.2:69448430-69448449 None:intergenic 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69447586-69447605 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69447575-69447594 None:intergenic 45.0%
GCAGAGAACAAAATTGGCGA+TGG + chr7.2:69447472-69447491 None:intergenic 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69448821-69448840 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69447637-69447656 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69447664-69447683 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:69448662-69448681 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69448626-69448645 MS.gene79148:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69448182-69448201 MS.gene79148:CDS 45.0%
TTTCGTCGATGGTTTATGGG+TGG - chr7.2:69447896-69447915 MS.gene79148:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69448270-69448289 MS.gene79148:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69448422-69448441 MS.gene79148:CDS 45.0%
! GGCAACCCATCTTTTGCATT+TGG + chr7.2:69448485-69448504 None:intergenic 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69447803-69447822 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69447845-69447864 None:intergenic 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69447808-69447827 None:intergenic 45.0%
AAGTTGTCGACCGACCATAG+AGG + chr7.2:69448227-69448246 None:intergenic 50.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69448903-69448922 MS.gene79148:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69447491-69447510 MS.gene79148:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69448502-69448521 MS.gene79148:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69448506-69448525 None:intergenic 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69448231-69448250 MS.gene79148:intron 50.0%
TATGCTGAAGGAGCTAGGTG+TGG - chr7.2:69448631-69448650 MS.gene79148:CDS 50.0%
TCTGATGCAGTCAGTAGCAG+TGG - chr7.2:69448785-69448804 MS.gene79148:CDS 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:69447617-69447636 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69447644-69447663 None:intergenic 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69447838-69447857 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69447800-69447819 None:intergenic 50.0%
! GCTACTGACTGCATCAGATG+CGG + chr7.2:69448783-69448802 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69447814-69447833 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69447817-69447836 None:intergenic 50.0%
ACTGACTGCATCAGATGCGG+TGG + chr7.2:69448780-69448799 None:intergenic 55.0%
AGCCAGCAGCGATGATGCTT+AGG + chr7.2:69447743-69447762 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69448902-69448921 MS.gene79148:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:69447614-69447633 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69447632-69447651 None:intergenic 55.0%
GCAGTCAGTAGCAGTGGCAT+GGG - chr7.2:69448791-69448810 MS.gene79148:CDS 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:69447628-69447647 None:intergenic 55.0%
GTCCTAAGCATCATCGCTGC+TGG - chr7.2:69447738-69447757 MS.gene79148:CDS 55.0%
TGCAGTCAGTAGCAGTGGCA+TGG - chr7.2:69448790-69448809 MS.gene79148:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69447766-69447785 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69447877-69447896 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69447858-69447877 MS.gene79148:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69447832-69447851 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69448765-69448784 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69447747-69447766 MS.gene79148:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69447862-69447881 MS.gene79148:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69447861-69447880 MS.gene79148:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69447876-69447895 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69447746-69447765 MS.gene79148:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69447444 69448928 69447444 ID=MS.gene79148
chr7.2 mRNA 69447444 69448928 69447444 ID=MS.gene79148.t1;Parent=MS.gene79148
chr7.2 exon 69448365 69448928 69448365 ID=MS.gene79148.t1.exon1;Parent=MS.gene79148.t1
chr7.2 CDS 69448365 69448928 69448365 ID=cds.MS.gene79148.t1;Parent=MS.gene79148.t1
chr7.2 exon 69447444 69448220 69447444 ID=MS.gene79148.t1.exon2;Parent=MS.gene79148.t1
chr7.2 CDS 69447444 69448220 69447444 ID=cds.MS.gene79148.t1;Parent=MS.gene79148.t1
Gene Sequence

>MS.gene79148

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAATTTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTCCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTTTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAGTTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTATGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAAGTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGCGAAGACAAGCGTCAATTTACTATGTATTTTTTTCTTCCAAATGCAAAAGATGGGTTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGCAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGTGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCAGTAGCAGTGGCATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene79148.t1

MRFSRKTIAIANFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGLWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLWSVDNLTRLIFANALYFKGEWNDKFDASDTNAYDFHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLQHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVSSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG