AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79151

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79151.t1 MTR_3g101030 79.765 425 69 3 39 446 5 429 0.0 668
MS.gene79151.t1 MTR_3g101050 71.429 448 74 7 1 445 1 397 0.0 592
MS.gene79151.t1 MTR_3g101010 79.896 383 73 2 66 446 9 389 0.0 591
MS.gene79151.t1 MTR_8g027395 66.000 400 125 4 49 446 7 397 0.0 513
MS.gene79151.t1 MTR_3g018740 68.930 383 112 3 65 444 8 386 0.0 513
MS.gene79151.t1 MTR_4g045707 66.837 392 122 5 57 446 3 388 5.85e-178 503
MS.gene79151.t1 MTR_8g461160 65.306 392 132 3 57 444 1 392 1.64e-175 497
MS.gene79151.t1 MTR_3g101180 64.322 398 130 4 57 444 3 398 6.55e-172 488
MS.gene79151.t1 MTR_8g027420 64.675 385 117 4 64 446 8 375 1.87e-170 483
MS.gene79151.t1 MTR_7g451890 59.305 403 158 3 48 446 2 402 1.05e-165 472
MS.gene79151.t1 MTR_7g047780 59.801 403 156 3 48 446 2 402 1.18e-164 469
MS.gene79151.t1 MTR_3g048000 62.629 388 120 6 60 444 25 390 1.23e-164 469
MS.gene79151.t1 MTR_7g050810 61.697 389 137 3 66 446 20 404 1.74e-164 469
MS.gene79151.t1 MTR_4g088525 65.395 367 119 4 81 445 8 368 1.67e-163 465
MS.gene79151.t1 MTR_7g050750 61.039 385 146 2 66 446 12 396 1.25e-161 462
MS.gene79151.t1 MTR_2g046030 62.857 385 130 5 66 444 9 386 3.53e-161 460
MS.gene79151.t1 MTR_4g088535 64.249 386 112 6 58 441 5 366 1.47e-160 458
MS.gene79151.t1 MTR_2g045980 62.857 385 130 5 66 444 9 386 1.49e-160 459
MS.gene79151.t1 MTR_3g101130 59.948 382 150 2 66 446 10 389 2.48e-158 453
MS.gene79151.t1 MTR_3g015620 60.677 384 121 6 66 444 20 378 2.99e-149 429
MS.gene79151.t1 MTR_3g102920 58.047 379 119 3 70 444 66 408 9.55e-139 404
MS.gene79151.t1 MTR_3g100995 75.294 255 62 1 192 446 11 264 1.36e-138 398
MS.gene79151.t1 MTR_3g101200 55.285 369 140 4 78 444 45 390 1.41e-125 370
MS.gene79151.t1 MTR_3g101190 54.076 368 102 4 83 446 8 312 1.48e-123 362
MS.gene79151.t1 MTR_3g018747 67.692 260 66 3 188 444 9 253 1.12e-118 347
MS.gene79151.t1 MTR_3g100010 57.143 322 90 2 85 373 38 344 2.22e-114 339
MS.gene79151.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 9.78e-112 332
MS.gene79151.t1 MTR_3g015760 58.123 277 106 4 173 444 8 279 2.64e-98 296
MS.gene79151.t1 MTR_3g111160 68.095 210 62 2 240 446 13 220 3.05e-89 271
MS.gene79151.t1 MTR_3g100520 60.811 222 70 3 229 446 1 209 1.80e-85 260
MS.gene79151.t1 MTR_3g101110 60.251 239 63 4 188 420 68 280 1.84e-85 263
MS.gene79151.t1 MTR_3g114310 41.250 400 208 11 64 446 21 410 1.38e-83 263
MS.gene79151.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 7.21e-83 253
MS.gene79151.t1 MTR_2g046410 63.547 203 66 3 248 444 147 347 8.52e-78 246
MS.gene79151.t1 MTR_3g101020 66.486 185 37 2 262 446 1 160 1.08e-76 236
MS.gene79151.t1 MTR_3g111150 58.192 177 48 2 66 242 3 153 6.98e-61 196
MS.gene79151.t1 MTR_3g101150 62.420 157 53 2 294 444 1 157 2.12e-59 192
MS.gene79151.t1 MTR_3g102870 57.764 161 66 1 251 409 1 161 4.91e-57 186
MS.gene79151.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 1.03e-43 160
MS.gene79151.t1 MTR_4g093550 62.195 82 29 1 66 147 10 89 1.72e-23 94.4
MS.gene79151.t1 MTR_6g046890 61.842 76 26 1 80 155 15 87 5.77e-19 83.6
MS.gene79151.t1 MTR_3g101140 61.538 65 24 1 383 446 52 116 7.79e-17 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79151.t1 AT1G47710 51.358 405 188 4 44 444 18 417 2.25e-143 416
MS.gene79151.t1 AT1G47710 52.880 382 175 3 67 444 10 390 4.13e-143 414
MS.gene79151.t1 AT3G45220 47.436 390 185 7 66 443 9 390 9.84e-118 350
MS.gene79151.t1 AT2G25240 46.875 384 188 7 66 443 9 382 6.82e-114 340
MS.gene79151.t1 AT2G26390 46.770 387 188 6 66 443 9 386 3.63e-113 338
MS.gene79151.t1 AT1G62170 42.818 369 180 5 85 445 88 433 5.98e-95 293
MS.gene79151.t1 AT2G14540 44.010 384 186 6 66 443 37 397 9.98e-93 286
MS.gene79151.t1 AT1G64030 42.448 384 194 7 66 443 9 371 1.99e-90 280
MS.gene79151.t1 AT1G62170 39.303 402 180 6 85 445 88 466 5.04e-88 276
MS.gene79151.t1 AT2G35580 41.114 377 185 9 81 443 18 371 2.47e-87 271
MS.gene79151.t1 AT1G64010 45.370 216 96 4 229 443 1 195 1.04e-57 189
MS.gene79151.t1 AT1G64010 45.274 201 88 4 244 443 2 181 1.23e-51 172
MS.gene79151.t1 AT1G62160 39.560 182 87 4 266 445 60 220 2.22e-34 128
MS.gene79151.t1 AT1G63280 51.304 115 52 2 188 300 8 120 7.02e-31 115
MS.gene79151.t1 AT1G51330 48.649 111 54 2 187 294 30 140 1.02e-22 95.5
MS.gene79151.t1 AT1G64020 32.432 111 72 3 70 179 13 121 1.10e-12 65.1

Find 104 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69415814 MS.gene79151:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69415915 MS.gene79151:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+69415646 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69416395 None:intergenic
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69416518 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69415484 MS.gene79151:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69415175 MS.gene79151:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69416272 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69415485 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.331976 7.2:-69415410 MS.gene79151:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69415912 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69416185 MS.gene79151:CDS
GAAGAAGCAGAGAACAAAAT+TGG 0.347022 7.2:+69416602 None:intergenic
GGCTACCGAATCTGAGTTAC+TGG 0.351430 7.2:-69415554 MS.gene79151:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69415510 MS.gene79151:CDS
TTCCTTCCAAATGCAAAAGA+TGG 0.367541 7.2:-69415601 MS.gene79151:CDS
GCCAACTTTGCTTGAGAAGC+TGG 0.369446 7.2:-69415575 MS.gene79151:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69415484 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69416410 None:intergenic
ATTCAAAAGGCGAAAATCAT+AGG 0.386713 7.2:+69415753 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.389726 7.2:+69415315 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69415199 MS.gene79151:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69416152 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69416151 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69416388 MS.gene79151:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69416138 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69415868 MS.gene79151:CDS
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69415194 MS.gene79151:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69415867 MS.gene79151:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.446012 7.2:-69415737 MS.gene79151:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-69415527 MS.gene79151:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69416505 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69415340 MS.gene79151:CDS
GCATTCACTAGCAGTGGAAT+GGG 0.451094 7.2:-69415286 MS.gene79151:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.453776 7.2:+69415740 None:intergenic
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:+69415229 None:intergenic
CTCGGAGCCAGCAGCGATGA+TGG 0.454855 7.2:+69416332 None:intergenic
TGCATTCACTAGCAGTGGAA+TGG 0.472960 7.2:-69415287 MS.gene79151:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69416147 MS.gene79151:CDS
ATCATCGCTGCTGGCTCCGA+GGG 0.482435 7.2:-69416330 MS.gene79151:CDS
TCCTTCCAAATGCAAAAGAT+GGG 0.485174 7.2:-69415600 MS.gene79151:CDS
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+69416452 None:intergenic
AGCCAGCAGCGATGATGGTT+AGG 0.488928 7.2:+69416337 None:intergenic
GTCCTAACCATCATCGCTGC+TGG 0.491022 7.2:-69416339 MS.gene79151:CDS
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69416184 MS.gene79151:CDS
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69416204 None:intergenic
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69416306 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69415914 MS.gene79151:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69416277 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+69415650 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69416528 None:intergenic
GTGTTCCAGTAACTCAGATT+CGG 0.500783 7.2:+69415549 None:intergenic
GCCAGCTTCTCAAGCAAAGT+TGG 0.503025 7.2:+69415574 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69415174 MS.gene79151:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69416314 None:intergenic
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:-69415217 MS.gene79151:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:+69415230 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69416443 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69416305 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69415259 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69416421 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-69415655 MS.gene79151:CDS
GGAGACGAGGATAGAGGCGA+AGG 0.534345 7.2:+69416248 None:intergenic
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69415807 MS.gene79151:CDS
AATGGCGGAGACGAGGATAG+AGG 0.534736 7.2:+69416242 None:intergenic
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69416280 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+69416448 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:-69415451 MS.gene79151:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.543407 7.2:-69416331 MS.gene79151:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69416215 MS.gene79151:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69416219 MS.gene79151:CDS
AGGACAACTTGTAGTGAAAG+TGG 0.553374 7.2:+69416357 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69415520 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69416494 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69416192 MS.gene79151:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69415520 MS.gene79151:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69416091 MS.gene79151:intron
GTCTCCGCCATTCTACAAAA+CGG 0.575265 7.2:-69416231 MS.gene79151:CDS
TTTGTAGAATGGCGGAGACG+AGG 0.576347 7.2:+69416235 None:intergenic
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69416307 None:intergenic
GTAAGACCTCCATTGCTGAA+AGG 0.581658 7.2:+69415418 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69415163 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69416216 MS.gene79151:CDS
TCTATTGCATTCACTAGCAG+TGG 0.592901 7.2:-69415292 MS.gene79151:CDS
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69416422 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69416263 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69415458 MS.gene79151:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69416203 None:intergenic
GCAGAGAACAAAATTGGCGA+TGG 0.606690 7.2:+69416608 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69416436 None:intergenic
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69416586 MS.gene79151:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69416495 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69416181 MS.gene79151:CDS
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+69416463 None:intergenic
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69415895 MS.gene79151:CDS
GGTCTGTCGACAACTTAACT+CGG 0.656685 7.2:-69415846 MS.gene79151:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69416416 None:intergenic
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69416266 None:intergenic
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+69416466 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:-69415446 MS.gene79151:CDS
AGTGAATGCAATAGATGCGG+TGG 0.701437 7.2:+69415300 None:intergenic
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69416192 None:intergenic
GCTAGTGAATGCAATAGATG+CGG 0.744397 7.2:+69415297 None:intergenic
AAGTTGTCGACAGACCCTAG+AGG 0.761678 7.2:+69415853 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69415848-69415867 MS.gene79151:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69415787-69415806 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69416322-69416341 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG + chr7.2:69416577-69416596 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG + chr7.2:69416578-69416597 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69415857-69415876 MS.gene79151:CDS 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69415416-69415435 MS.gene79151:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG - chr7.2:69416587-69416606 MS.gene79151:CDS 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69416320-69416339 MS.gene79151:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69416323-69416342 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69416464-69416483 MS.gene79151:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69415756-69415775 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69415755-69415774 None:intergenic 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69416019-69416038 MS.gene79151:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69416436-69416455 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69416131-69416150 MS.gene79151:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69415279-69415298 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69415936-69415955 MS.gene79151:intron 30.0%
ATTCAAAAGGCGAAAATCAT+AGG + chr7.2:69416054-69416073 None:intergenic 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69415412-69415431 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69415890-69415909 MS.gene79151:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69416067-69416086 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69415889-69415908 MS.gene79151:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69415937-69415956 MS.gene79151:intron 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:69416161-69416180 None:intergenic 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69416067-69416086 MS.gene79151:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69415257-69415276 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69415754-69415773 None:intergenic 30.0%
! TATGATTTTCGCCTTTTGAA+TGG - chr7.2:69416053-69416072 MS.gene79151:intron 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69415397-69415416 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69415289-69415308 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69416610-69416629 MS.gene79151:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69416605-69416624 MS.gene79151:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69415895-69415914 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69416394-69416413 MS.gene79151:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69415655-69415674 None:intergenic 35.0%
GAAGAAGCAGAGAACAAAAT+TGG + chr7.2:69415205-69415224 None:intergenic 35.0%
TCCTTCCAAATGCAAAAGAT+GGG - chr7.2:69416204-69416223 MS.gene79151:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69415657-69415676 MS.gene79151:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69416346-69416365 MS.gene79151:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69415656-69415675 None:intergenic 35.0%
TTCCTTCCAAATGCAAAAGA+TGG - chr7.2:69416203-69416222 MS.gene79151:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69415264-69415283 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69415669-69415688 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69415501-69415520 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69415713-69415732 MS.gene79151:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69416294-69416313 MS.gene79151:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69415312-69415331 None:intergenic 40.0%
AGGACAACTTGTAGTGAAAG+TGG + chr7.2:69415450-69415469 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69415620-69415639 MS.gene79151:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69416277-69416296 MS.gene79151:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69416287-69416306 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69416284-69416303 MS.gene79151:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:69416157-69416176 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69415990-69416009 MS.gene79151:intron 40.0%
GCTAGTGAATGCAATAGATG+CGG + chr7.2:69416510-69416529 None:intergenic 40.0%
GTGTTCCAGTAACTCAGATT+CGG + chr7.2:69416258-69416277 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69415619-69415638 MS.gene79151:CDS 40.0%
TCTATTGCATTCACTAGCAG+TGG - chr7.2:69416512-69416531 MS.gene79151:CDS 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69415502-69415521 None:intergenic 40.0%
! GTTTTACCTTTCAGCAATGG+AGG - chr7.2:69416380-69416399 MS.gene79151:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69415500-69415519 None:intergenic 40.0%
!! GTGGTTTTACCTTTCAGCAA+TGG - chr7.2:69416377-69416396 MS.gene79151:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69415386-69415405 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69415385-69415404 None:intergenic 45.0%
AGTGAATGCAATAGATGCGG+TGG + chr7.2:69416507-69416526 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69415615-69415634 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69415612-69415631 MS.gene79151:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69415313-69415332 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69415302-69415321 None:intergenic 45.0%
GCAGAGAACAAAATTGGCGA+TGG + chr7.2:69415199-69415218 None:intergenic 45.0%
GCATTCACTAGCAGTGGAAT+GGG - chr7.2:69416518-69416537 MS.gene79151:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69416548-69416567 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69415364-69415383 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69415391-69415410 None:intergenic 45.0%
GGTCTGTCGACAACTTAACT+CGG - chr7.2:69415958-69415977 MS.gene79151:intron 45.0%
GTAAGACCTCCATTGCTGAA+AGG + chr7.2:69416389-69416408 None:intergenic 45.0%
GTCTCCGCCATTCTACAAAA+CGG - chr7.2:69415573-69415592 MS.gene79151:CDS 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69416353-69416372 MS.gene79151:CDS 45.0%
TGCATTCACTAGCAGTGGAA+TGG - chr7.2:69416517-69416536 MS.gene79151:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69415909-69415928 MS.gene79151:CDS 45.0%
! AGCACCGTTTTGTAGAATGG+CGG + chr7.2:69415580-69415599 None:intergenic 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69415997-69416016 MS.gene79151:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69416149-69416168 MS.gene79151:CDS 45.0%
! GCCCATCTTTTGCATTTGGA+AGG + chr7.2:69416208-69416227 None:intergenic 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69415530-69415549 None:intergenic 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69415535-69415554 None:intergenic 45.0%
AAGTTGTCGACAGACCCTAG+AGG + chr7.2:69415954-69415973 None:intergenic 50.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69416630-69416649 MS.gene79151:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69415218-69415237 MS.gene79151:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69416229-69416248 MS.gene79151:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69416233-69416252 None:intergenic 50.0%
GGCTACCGAATCTGAGTTAC+TGG - chr7.2:69416250-69416269 MS.gene79151:CDS 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:69415344-69415363 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69415371-69415390 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69415623-69415642 MS.gene79151:CDS 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69415527-69415546 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69416212-69416231 None:intergenic 50.0%
! TTTGTAGAATGGCGGAGACG+AGG + chr7.2:69415572-69415591 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69415541-69415560 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69415544-69415563 None:intergenic 50.0%
!!! GGGAGCACCGTTTTGTAGAA+TGG + chr7.2:69415583-69415602 None:intergenic 50.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69416629-69416648 MS.gene79151:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:69415341-69415360 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69415359-69415378 None:intergenic 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:69415355-69415374 None:intergenic 55.0%
GTCCTAACCATCATCGCTGC+TGG - chr7.2:69415465-69415484 MS.gene79151:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG - chr7.2:69416358-69416377 MS.gene79151:CDS 55.0%
! AATGGCGGAGACGAGGATAG+AGG + chr7.2:69415565-69415584 None:intergenic 55.0%
! AGCCAGCAGCGATGATGGTT+AGG + chr7.2:69415470-69415489 None:intergenic 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69415493-69415512 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69415604-69415623 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69415585-69415604 MS.gene79151:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69415559-69415578 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69416492-69416511 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69415474-69415493 MS.gene79151:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69415589-69415608 MS.gene79151:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69415588-69415607 MS.gene79151:CDS 65.0%
CTCGGAGCCAGCAGCGATGA+TGG + chr7.2:69415475-69415494 None:intergenic 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69415603-69415622 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69415473-69415492 MS.gene79151:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69415171 69416655 69415171 ID=MS.gene79151
chr7.2 mRNA 69415171 69416655 69415171 ID=MS.gene79151.t1;Parent=MS.gene79151
chr7.2 exon 69416092 69416655 69416092 ID=MS.gene79151.t1.exon1;Parent=MS.gene79151.t1
chr7.2 CDS 69416092 69416655 69416092 ID=cds.MS.gene79151.t1;Parent=MS.gene79151.t1
chr7.2 exon 69415171 69415947 69415171 ID=MS.gene79151.t1.exon2;Parent=MS.gene79151.t1
chr7.2 CDS 69415171 69415947 69415171 ID=cds.MS.gene79151.t1;Parent=MS.gene79151.t1
Gene Sequence

>MS.gene79151

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAATTTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTCCTAACCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGCCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCTGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCGCCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTCCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTACCGAATCTGAGTTACTGGAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCAGCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTATTGCATTCACTAGCAGTGGAATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene79151.t1

MRFSRKTIAIANFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLTIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSAILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFRLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLATESELLEHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFSNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASIAFTSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG