AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79152

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79152.t1 MTR_3g101030 80.000 425 68 3 39 446 5 429 0.0 670
MS.gene79152.t1 MTR_3g101050 72.098 448 71 7 1 445 1 397 0.0 598
MS.gene79152.t1 MTR_3g101010 80.418 383 71 2 66 446 9 389 0.0 595
MS.gene79152.t1 MTR_3g018740 69.452 383 110 3 65 444 8 386 0.0 517
MS.gene79152.t1 MTR_8g027395 68.052 385 115 3 64 446 19 397 0.0 517
MS.gene79152.t1 MTR_4g045707 67.347 392 120 5 57 446 3 388 2.66e-179 506
MS.gene79152.t1 MTR_8g461160 65.816 392 130 3 57 444 1 392 6.59e-177 500
MS.gene79152.t1 MTR_3g101180 64.573 398 129 4 57 444 3 398 2.85e-172 489
MS.gene79152.t1 MTR_8g027420 65.195 385 115 4 64 446 8 375 6.00e-172 487
MS.gene79152.t1 MTR_7g451890 59.553 403 157 3 48 446 2 402 2.20e-166 474
MS.gene79152.t1 MTR_3g048000 63.144 388 118 6 60 444 25 390 3.33e-166 473
MS.gene79152.t1 MTR_7g047780 60.050 403 155 3 48 446 2 402 3.06e-165 471
MS.gene79152.t1 MTR_4g088525 65.668 367 118 4 81 445 8 368 6.81e-165 469
MS.gene79152.t1 MTR_7g050810 61.697 389 137 3 66 446 20 404 3.39e-164 468
MS.gene79152.t1 MTR_2g046030 63.377 385 128 5 66 444 9 386 8.00e-163 464
MS.gene79152.t1 MTR_4g088535 64.767 386 110 6 58 441 5 366 3.37e-162 462
MS.gene79152.t1 MTR_2g045980 63.377 385 128 5 66 444 9 386 3.81e-162 462
MS.gene79152.t1 MTR_7g050750 61.299 385 145 2 66 446 12 396 4.19e-162 463
MS.gene79152.t1 MTR_3g101130 60.471 382 148 2 66 446 10 389 7.47e-160 457
MS.gene79152.t1 MTR_3g015620 61.198 384 119 6 66 444 20 378 9.33e-151 433
MS.gene79152.t1 MTR_3g100995 75.294 255 62 1 192 446 11 264 2.89e-139 400
MS.gene79152.t1 MTR_3g102920 58.311 379 118 4 70 444 66 408 1.06e-137 401
MS.gene79152.t1 MTR_3g101200 55.827 369 138 4 78 444 45 390 2.27e-127 374
MS.gene79152.t1 MTR_3g101190 54.348 368 101 4 83 446 8 312 1.16e-124 364
MS.gene79152.t1 MTR_3g018747 68.077 260 65 3 188 444 9 253 1.01e-119 350
MS.gene79152.t1 MTR_3g100010 57.453 322 89 2 85 373 38 344 2.50e-115 342
MS.gene79152.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 1.26e-111 332
MS.gene79152.t1 MTR_3g015760 58.484 277 105 4 173 444 8 279 1.89e-99 299
MS.gene79152.t1 MTR_3g111160 68.571 210 61 2 240 446 13 220 2.87e-90 273
MS.gene79152.t1 MTR_3g100520 60.811 222 70 3 229 446 1 209 6.36e-86 261
MS.gene79152.t1 MTR_3g101110 60.251 239 63 4 188 420 68 280 1.62e-85 263
MS.gene79152.t1 MTR_3g099970 67.179 195 47 2 188 381 20 198 6.12e-84 256
MS.gene79152.t1 MTR_3g114310 41.250 400 208 11 64 446 21 410 1.09e-83 263
MS.gene79152.t1 MTR_2g046410 64.039 203 65 3 248 444 147 347 4.89e-79 249
MS.gene79152.t1 MTR_3g101020 66.486 185 37 2 262 446 1 160 1.49e-76 236
MS.gene79152.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 3.00e-61 197
MS.gene79152.t1 MTR_3g101150 62.420 157 53 2 294 444 1 157 2.34e-59 191
MS.gene79152.t1 MTR_3g102870 57.764 161 66 1 251 409 1 161 4.91e-57 186
MS.gene79152.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 8.90e-44 160
MS.gene79152.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 8.27e-24 95.5
MS.gene79152.t1 MTR_6g046890 63.158 76 25 1 80 155 15 87 2.50e-19 84.3
MS.gene79152.t1 MTR_3g101140 61.538 65 24 1 383 446 52 116 8.42e-17 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79152.t1 AT1G47710 51.852 405 186 4 44 444 18 417 5.66e-145 420
MS.gene79152.t1 AT1G47710 53.403 382 173 3 67 444 10 390 9.00e-145 419
MS.gene79152.t1 AT3G45220 47.692 390 184 7 66 443 9 390 7.43e-119 353
MS.gene79152.t1 AT2G25240 47.396 384 186 7 66 443 9 382 1.78e-115 344
MS.gene79152.t1 AT2G26390 47.287 387 186 6 66 443 9 386 1.03e-114 342
MS.gene79152.t1 AT1G62170 42.547 369 181 5 85 445 88 433 4.06e-95 293
MS.gene79152.t1 AT2G14540 44.010 384 186 6 66 443 37 397 1.82e-93 288
MS.gene79152.t1 AT1G64030 42.188 384 195 7 66 443 9 371 2.10e-90 280
MS.gene79152.t1 AT2G35580 41.645 377 183 9 81 443 18 371 5.21e-89 276
MS.gene79152.t1 AT1G62170 39.055 402 181 6 85 445 88 466 4.24e-88 276
MS.gene79152.t1 AT1G64010 45.833 216 95 4 229 443 1 195 7.35e-59 192
MS.gene79152.t1 AT1G64010 45.771 201 87 4 244 443 2 181 7.37e-53 176
MS.gene79152.t1 AT1G62160 39.560 182 87 4 266 445 60 220 2.22e-34 128
MS.gene79152.t1 AT1G63280 52.174 115 51 2 188 300 8 120 4.99e-32 118
MS.gene79152.t1 AT1G51330 49.550 111 53 2 187 294 30 140 7.37e-24 99.0
MS.gene79152.t1 AT1G64020 31.532 111 73 3 70 179 13 121 3.50e-12 63.5

Find 104 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69403349 MS.gene79152:CDS
ATCGATTTGGATATTGTTTA+TGG 0.196591 7.2:+69404053 None:intergenic
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69403450 MS.gene79152:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+69403181 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69403930 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69403019 MS.gene79152:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69402710 MS.gene79152:CDS
GAAGAAGCAGAGAACAAATT+TGG 0.317759 7.2:+69404137 None:intergenic
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69403807 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69403020 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.331976 7.2:-69402945 MS.gene79152:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69403447 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69403720 MS.gene79152:CDS
GGCTACCGAATCTGAGTTAC+TGG 0.351430 7.2:-69403089 MS.gene79152:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69403045 MS.gene79152:CDS
TTCCTTCCAAATGCAAAAGA+TGG 0.367541 7.2:-69403136 MS.gene79152:CDS
GCCAACTTTGCTTGAGAAGC+TGG 0.369446 7.2:-69403110 MS.gene79152:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69403019 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69403945 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.389726 7.2:+69402850 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+69403288 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69402734 MS.gene79152:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69403687 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69403686 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69403923 MS.gene79152:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69403673 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69403403 MS.gene79152:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69403272 MS.gene79152:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69403275 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69402729 MS.gene79152:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69403402 MS.gene79152:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-69403062 MS.gene79152:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69404040 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69402875 MS.gene79152:CDS
GCATTCACTAGCAGTGGAAT+GGG 0.451094 7.2:-69402821 MS.gene79152:CDS
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:+69402764 None:intergenic
ATATTGTTTATGGTTCTCTT+CGG 0.464401 7.2:+69404063 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69403865 MS.gene79152:CDS
TGCATTCACTAGCAGTGGAA+TGG 0.472960 7.2:-69402822 MS.gene79152:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69403682 MS.gene79152:CDS
TCCTTCCAAATGCAAAAGAT+GGG 0.485174 7.2:-69403135 MS.gene79152:CDS
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+69403987 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69403719 MS.gene79152:CDS
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69403739 None:intergenic
GTCCTAAGCATCATCGCTGC+TGG 0.494673 7.2:-69403874 MS.gene79152:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69403841 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69403449 MS.gene79152:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69403812 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+69403185 None:intergenic
GTGTTCCAGTAACTCAGATT+CGG 0.500783 7.2:+69403084 None:intergenic
GCCAGCTTCTCAAGCAAAGT+TGG 0.503025 7.2:+69403109 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69402709 MS.gene79152:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69403849 None:intergenic
AGCCAGCAGCGATGATGCTT+AGG 0.507534 7.2:+69403872 None:intergenic
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:-69402752 MS.gene79152:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:+69402765 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69403978 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69403840 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69402794 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69403956 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-69403190 MS.gene79152:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69403866 MS.gene79152:CDS
GGAGACGAGGATAGAGGCGA+AGG 0.534345 7.2:+69403783 None:intergenic
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69403342 MS.gene79152:CDS
AATGGCGGAGACGAGGATAG+AGG 0.534736 7.2:+69403777 None:intergenic
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69403815 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+69403983 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:-69402986 MS.gene79152:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69403750 MS.gene79152:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69403754 MS.gene79152:CDS
AGGACAACTTGTAGTGAAAG+TGG 0.550891 7.2:+69403892 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69403055 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69404029 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69403727 MS.gene79152:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69403055 MS.gene79152:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69403626 MS.gene79152:intron
GTCTCCGCCATTCTACAAAA+CGG 0.575265 7.2:-69403766 MS.gene79152:CDS
TTTGTAGAATGGCGGAGACG+AGG 0.576347 7.2:+69403770 None:intergenic
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69403842 None:intergenic
GTAAGACCTCCATTGCTGAA+AGG 0.581658 7.2:+69402953 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69402698 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69403751 MS.gene79152:CDS
TCTATTGCATTCACTAGCAG+TGG 0.592901 7.2:-69402827 MS.gene79152:CDS
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69403957 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69403798 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69402993 MS.gene79152:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69403738 None:intergenic
GCAGAGAACAAATTTGGCGA+TGG 0.609644 7.2:+69404143 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69403971 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-69403398 MS.gene79152:CDS
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69404121 MS.gene79152:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69404030 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69403716 MS.gene79152:CDS
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+69403998 None:intergenic
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69403430 MS.gene79152:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69403951 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69403381 MS.gene79152:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69403801 None:intergenic
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+69404001 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:-69402981 MS.gene79152:CDS
AGTGAATGCAATAGATGCGG+TGG 0.701437 7.2:+69402835 None:intergenic
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69403727 None:intergenic
GCTAGTGAATGCAATAGATG+CGG 0.744397 7.2:+69402832 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69403388 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69403383-69403402 MS.gene79152:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69403322-69403341 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69403857-69403876 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG + chr7.2:69404112-69404131 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG + chr7.2:69404113-69404132 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69403392-69403411 MS.gene79152:CDS 20.0%
! ATATTGTTTATGGTTCTCTT+CGG + chr7.2:69402814-69402833 None:intergenic 25.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69402951-69402970 MS.gene79152:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG - chr7.2:69404122-69404141 MS.gene79152:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:69403589-69403608 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69403855-69403874 MS.gene79152:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69403858-69403877 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69403999-69404018 MS.gene79152:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69403291-69403310 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69403290-69403309 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:69403588-69403607 MS.gene79152:intron 25.0%
!!! ATCGATTTGGATATTGTTTA+TGG + chr7.2:69402824-69402843 None:intergenic 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69403554-69403573 MS.gene79152:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69403971-69403990 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69403666-69403685 MS.gene79152:CDS 25.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69403471-69403490 MS.gene79152:intron 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69402947-69402966 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69403425-69403444 MS.gene79152:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69403602-69403621 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69403424-69403443 MS.gene79152:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69403472-69403491 MS.gene79152:intron 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:69403696-69403715 None:intergenic 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69403602-69403621 MS.gene79152:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69402792-69402811 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69403289-69403308 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69402932-69402951 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69404145-69404164 MS.gene79152:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69404140-69404159 MS.gene79152:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69403430-69403449 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69403929-69403948 MS.gene79152:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69403190-69403209 None:intergenic 35.0%
GAAGAAGCAGAGAACAAATT+TGG + chr7.2:69402740-69402759 None:intergenic 35.0%
TCCTTCCAAATGCAAAAGAT+GGG - chr7.2:69403739-69403758 MS.gene79152:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69403192-69403211 MS.gene79152:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69403881-69403900 MS.gene79152:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69403191-69403210 None:intergenic 35.0%
TTCCTTCCAAATGCAAAAGA+TGG - chr7.2:69403738-69403757 MS.gene79152:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69402799-69402818 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69403204-69403223 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69403036-69403055 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69403248-69403267 MS.gene79152:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69403829-69403848 MS.gene79152:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69402847-69402866 None:intergenic 40.0%
AGGACAACTTGTAGTGAAAG+TGG + chr7.2:69402985-69403004 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69403155-69403174 MS.gene79152:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69403812-69403831 MS.gene79152:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69403822-69403841 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69403819-69403838 MS.gene79152:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:69403692-69403711 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69403525-69403544 MS.gene79152:intron 40.0%
GCTAGTGAATGCAATAGATG+CGG + chr7.2:69404045-69404064 None:intergenic 40.0%
GTGTTCCAGTAACTCAGATT+CGG + chr7.2:69403793-69403812 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69403154-69403173 MS.gene79152:CDS 40.0%
TCTATTGCATTCACTAGCAG+TGG - chr7.2:69404047-69404066 MS.gene79152:CDS 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69403037-69403056 None:intergenic 40.0%
! GTTTTACCTTTCAGCAATGG+AGG - chr7.2:69403915-69403934 MS.gene79152:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69403035-69403054 None:intergenic 40.0%
!! GTGGTTTTACCTTTCAGCAA+TGG - chr7.2:69403912-69403931 MS.gene79152:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69402921-69402940 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69402920-69402939 None:intergenic 45.0%
AGTGAATGCAATAGATGCGG+TGG + chr7.2:69404042-69404061 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69403150-69403169 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69403147-69403166 MS.gene79152:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69402848-69402867 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69402837-69402856 None:intergenic 45.0%
GCAGAGAACAAATTTGGCGA+TGG + chr7.2:69402734-69402753 None:intergenic 45.0%
GCATTCACTAGCAGTGGAAT+GGG - chr7.2:69404053-69404072 MS.gene79152:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69404083-69404102 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69402899-69402918 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69402926-69402945 None:intergenic 45.0%
GTAAGACCTCCATTGCTGAA+AGG + chr7.2:69403924-69403943 None:intergenic 45.0%
GTCTCCGCCATTCTACAAAA+CGG - chr7.2:69403108-69403127 MS.gene79152:CDS 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69403888-69403907 MS.gene79152:CDS 45.0%
TGCATTCACTAGCAGTGGAA+TGG - chr7.2:69404052-69404071 MS.gene79152:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69403444-69403463 MS.gene79152:CDS 45.0%
! AGCACCGTTTTGTAGAATGG+CGG + chr7.2:69403115-69403134 None:intergenic 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69403532-69403551 MS.gene79152:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69403684-69403703 MS.gene79152:CDS 45.0%
! GCCCATCTTTTGCATTTGGA+AGG + chr7.2:69403743-69403762 None:intergenic 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69403065-69403084 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69403476-69403495 MS.gene79152:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69403070-69403089 None:intergenic 45.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69404165-69404184 MS.gene79152:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69402753-69402772 MS.gene79152:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69403764-69403783 MS.gene79152:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69403768-69403787 None:intergenic 50.0%
GGCTACCGAATCTGAGTTAC+TGG - chr7.2:69403785-69403804 MS.gene79152:CDS 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69403493-69403512 MS.gene79152:intron 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:69402879-69402898 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69402906-69402925 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69403158-69403177 MS.gene79152:CDS 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69403062-69403081 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69403747-69403766 None:intergenic 50.0%
! TTTGTAGAATGGCGGAGACG+AGG + chr7.2:69403107-69403126 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69403076-69403095 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69403079-69403098 None:intergenic 50.0%
!!! GGGAGCACCGTTTTGTAGAA+TGG + chr7.2:69403118-69403137 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69403489-69403508 None:intergenic 55.0%
AGCCAGCAGCGATGATGCTT+AGG + chr7.2:69403005-69403024 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69404164-69404183 MS.gene79152:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:69402876-69402895 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69402894-69402913 None:intergenic 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:69402890-69402909 None:intergenic 55.0%
GTCCTAAGCATCATCGCTGC+TGG - chr7.2:69403000-69403019 MS.gene79152:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG - chr7.2:69403893-69403912 MS.gene79152:CDS 55.0%
! AATGGCGGAGACGAGGATAG+AGG + chr7.2:69403100-69403119 None:intergenic 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69403028-69403047 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69403139-69403158 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69403120-69403139 MS.gene79152:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69403094-69403113 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69404027-69404046 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69403009-69403028 MS.gene79152:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69403124-69403143 MS.gene79152:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69403123-69403142 MS.gene79152:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69403138-69403157 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69403008-69403027 MS.gene79152:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69402706 69404190 69402706 ID=MS.gene79152
chr7.2 mRNA 69402706 69404190 69402706 ID=MS.gene79152.t1;Parent=MS.gene79152
chr7.2 exon 69403627 69404190 69403627 ID=MS.gene79152.t1.exon1;Parent=MS.gene79152.t1
chr7.2 CDS 69403627 69404190 69403627 ID=cds.MS.gene79152.t1;Parent=MS.gene79152.t1
chr7.2 exon 69402706 69403482 69402706 ID=MS.gene79152.t1.exon2;Parent=MS.gene79152.t1
chr7.2 CDS 69402706 69403482 69402706 ID=cds.MS.gene79152.t1;Parent=MS.gene79152.t1
Gene Sequence

>MS.gene79152

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAATTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAACAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTCCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGCCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTCCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTACCGAATCTGAGTTACTGGAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCAGCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTATTGCATTCACTAGCAGTGGAATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene79152.t1

MRFSRKTIAIAKFVLCFFVLNIVACLIILDPKVIFPKRTINNIQIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSAILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLATESELLEHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFSNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASIAFTSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG