AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79156

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79156.t1 MTR_3g101030 80.471 425 66 3 39 446 5 429 0.0 675
MS.gene79156.t1 MTR_3g101050 72.321 448 70 7 1 445 1 397 0.0 599
MS.gene79156.t1 MTR_3g101010 80.940 383 69 2 66 446 9 389 0.0 599
MS.gene79156.t1 MTR_3g018740 69.974 383 108 3 65 444 8 386 0.0 520
MS.gene79156.t1 MTR_8g027395 68.052 385 115 3 64 446 19 397 0.0 517
MS.gene79156.t1 MTR_4g045707 66.837 392 122 5 57 446 3 388 8.58e-178 502
MS.gene79156.t1 MTR_8g461160 65.561 392 131 2 57 444 1 392 2.17e-176 499
MS.gene79156.t1 MTR_3g101180 64.573 398 129 4 57 444 3 398 1.06e-172 490
MS.gene79156.t1 MTR_8g027420 65.195 385 115 4 64 446 8 375 1.86e-172 488
MS.gene79156.t1 MTR_3g048000 63.144 388 118 5 60 444 25 390 1.60e-166 474
MS.gene79156.t1 MTR_7g451890 60.050 403 155 3 48 446 2 402 2.83e-166 474
MS.gene79156.t1 MTR_4g088525 65.123 367 120 3 81 445 8 368 3.35e-164 467
MS.gene79156.t1 MTR_7g050810 61.440 389 138 3 66 446 20 404 1.54e-163 467
MS.gene79156.t1 MTR_2g046030 63.472 386 128 5 65 444 8 386 2.28e-163 466
MS.gene79156.t1 MTR_7g047780 60.050 403 155 3 48 446 2 402 2.46e-163 466
MS.gene79156.t1 MTR_2g045980 63.636 385 127 5 66 444 9 386 6.72e-163 464
MS.gene79156.t1 MTR_4g088535 64.249 386 112 6 58 441 5 366 6.70e-162 462
MS.gene79156.t1 MTR_7g050750 61.039 385 146 2 66 446 12 396 4.05e-161 460
MS.gene79156.t1 MTR_3g101130 60.209 382 149 2 66 446 10 389 5.15e-159 455
MS.gene79156.t1 MTR_3g015620 61.198 384 119 6 66 444 20 378 1.52e-150 433
MS.gene79156.t1 MTR_3g100995 75.686 255 61 1 192 446 11 264 8.61e-140 401
MS.gene79156.t1 MTR_3g102920 57.895 380 118 6 70 444 66 408 4.24e-136 397
MS.gene79156.t1 MTR_3g101200 55.285 369 140 4 78 444 45 390 4.82e-126 371
MS.gene79156.t1 MTR_3g101190 54.076 368 102 4 83 446 8 312 8.88e-124 362
MS.gene79156.t1 MTR_3g018747 68.462 260 64 3 188 444 9 253 1.81e-120 352
MS.gene79156.t1 MTR_3g100010 58.385 322 86 2 85 373 38 344 2.93e-116 344
MS.gene79156.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 1.09e-110 329
MS.gene79156.t1 MTR_3g015760 58.484 277 105 4 173 444 8 279 7.92e-99 297
MS.gene79156.t1 MTR_3g111160 67.619 210 63 2 240 446 13 220 5.41e-89 270
MS.gene79156.t1 MTR_3g101110 61.088 239 61 4 188 420 68 280 9.96e-88 269
MS.gene79156.t1 MTR_3g100520 59.459 222 73 3 229 446 1 209 1.38e-84 258
MS.gene79156.t1 MTR_3g114310 42.000 400 205 12 64 446 21 410 7.70e-84 264
MS.gene79156.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 1.60e-83 255
MS.gene79156.t1 MTR_2g046410 64.039 203 65 3 248 444 147 347 1.04e-78 248
MS.gene79156.t1 MTR_3g101020 67.027 185 36 2 262 446 1 160 4.74e-77 237
MS.gene79156.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 8.55e-62 198
MS.gene79156.t1 MTR_3g101150 61.783 157 54 2 294 444 1 157 1.30e-58 189
MS.gene79156.t1 MTR_3g102870 57.143 161 67 1 251 409 1 161 2.08e-55 182
MS.gene79156.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 2.68e-44 162
MS.gene79156.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 2.13e-24 97.1
MS.gene79156.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 7.96e-20 85.9
MS.gene79156.t1 MTR_3g101140 63.077 65 23 1 383 446 52 116 1.40e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79156.t1 AT1G47710 51.358 405 188 4 44 444 18 417 2.31e-142 414
MS.gene79156.t1 AT1G47710 52.880 382 175 3 67 444 10 390 2.60e-142 412
MS.gene79156.t1 AT3G45220 47.815 389 185 6 66 443 9 390 2.56e-119 354
MS.gene79156.t1 AT2G25240 47.396 384 186 7 66 443 9 382 9.05e-114 339
MS.gene79156.t1 AT2G26390 46.512 387 189 6 66 443 9 386 5.46e-112 335
MS.gene79156.t1 AT1G62170 42.507 367 184 4 85 445 88 433 6.74e-95 293
MS.gene79156.t1 AT2G14540 44.271 384 185 6 66 443 37 397 7.34e-94 289
MS.gene79156.t1 AT1G64030 42.708 384 193 7 66 443 9 371 3.11e-91 281
MS.gene79156.t1 AT2G35580 42.091 373 187 8 81 443 18 371 1.06e-89 277
MS.gene79156.t1 AT1G62170 39.000 400 184 5 85 445 88 466 5.49e-88 276
MS.gene79156.t1 AT1G64010 46.759 216 93 4 229 443 1 195 5.05e-59 192
MS.gene79156.t1 AT1G64010 46.766 201 85 4 244 443 2 181 5.24e-53 176
MS.gene79156.t1 AT1G62160 39.560 182 87 4 266 445 60 220 7.80e-34 127
MS.gene79156.t1 AT1G63280 52.174 115 51 2 188 300 8 120 5.70e-32 118
MS.gene79156.t1 AT1G51330 50.450 111 52 2 187 294 30 140 2.12e-24 100
MS.gene79156.t1 AT1G64020 32.432 111 72 3 70 179 13 121 2.97e-12 63.9

Find 101 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69336597 MS.gene79156:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69336698 MS.gene79156:CDS
TTGTCTTCGCCTTGCTTATA+AGG 0.248930 7.2:+69336429 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69337179 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-69336193 MS.gene79156:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69337302 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69336267 MS.gene79156:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69335958 MS.gene79156:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69337056 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69336268 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-69336358 MS.gene79156:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69336695 None:intergenic
TTTCTTCCAAATGCAAAAGA+TGG 0.344851 7.2:-69336384 MS.gene79156:CDS
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69336969 MS.gene79156:CDS
GAAGAAGCAGAGAACAAAAT+TGG 0.347022 7.2:+69337386 None:intergenic
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69336293 MS.gene79156:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69336267 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69337194 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+69336098 None:intergenic
ATTCAAAAGGTGAAAGTCAT+AGG 0.388384 7.2:+69336536 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69335982 MS.gene79156:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69336936 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69336935 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69337172 MS.gene79156:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69336922 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69336651 MS.gene79156:CDS
CCTACTTCCACTTTATCAAA+AGG 0.435106 7.2:+69336303 None:intergenic
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69336520 MS.gene79156:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69336523 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69335977 MS.gene79156:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69336650 MS.gene79156:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69337289 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69336123 MS.gene79156:CDS
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:+69336012 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69337114 MS.gene79156:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69336931 MS.gene79156:CDS
TTCTTCCAAATGCAAAAGAT+GGG 0.486946 7.2:-69336383 MS.gene79156:CDS
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+69337236 None:intergenic
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+69336357 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69336968 MS.gene79156:CDS
GTGTTGCAGTAACTCAGATT+CGG 0.491692 7.2:+69336332 None:intergenic
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69336988 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-69337123 MS.gene79156:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69337090 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69336697 MS.gene79156:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69337061 None:intergenic
CTTCGCCTTGCTTATAAGGA+AGG 0.497710 7.2:+69336433 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69337312 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69335957 MS.gene79156:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69337098 None:intergenic
TGCAGTCAGTAGCAGTGGCA+TGG 0.511284 7.2:-69336070 MS.gene79156:CDS
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:-69336000 MS.gene79156:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:+69336013 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69337227 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69337089 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69336042 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69337205 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+69337141 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532609 7.2:-69336438 MS.gene79156:CDS
GCAGTCAGTAGCAGTGGCAT+GGG 0.532869 7.2:-69336069 MS.gene79156:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69337115 MS.gene79156:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69336590 MS.gene79156:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69337064 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69337026 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69337032 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+69337232 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.547156 7.2:-69336234 MS.gene79156:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69336999 MS.gene79156:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69337003 MS.gene79156:CDS
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69337278 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69336976 MS.gene79156:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69336875 MS.gene79156:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69337015 MS.gene79156:CDS
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69337091 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+69336201 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69335946 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69337000 MS.gene79156:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69337019 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69337206 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69337047 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69336241 MS.gene79156:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69336987 None:intergenic
GCAGAGAACAAAATTGGCGA+TGG 0.606690 7.2:+69337392 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69337220 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-69336646 MS.gene79156:CDS
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69337370 MS.gene79156:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69337279 None:intergenic
ACTTCATGACTAGTGAGAAG+AGG 0.625893 7.2:-69336494 MS.gene79156:CDS
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69336965 MS.gene79156:CDS
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+69337247 None:intergenic
TCTGATGCAGTCAGTAGCAG+TGG 0.636122 7.2:-69336075 MS.gene79156:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69336678 MS.gene79156:CDS
ACTGACTGCATCAGATGCGG+TGG 0.641619 7.2:+69336083 None:intergenic
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69337200 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69336629 MS.gene79156:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69337050 None:intergenic
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+69337250 None:intergenic
GCTACTGACTGCATCAGATG+CGG 0.675085 7.2:+69336080 None:intergenic
TATGCTGAAGGAGCTAGGTG+TGG 0.709172 7.2:-69336229 MS.gene79156:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69336976 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69336636 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69336632-69336651 MS.gene79156:CDS 10.0%
!! ACAAAAAATTTAACAAAATC+AGG + chr7.2:69336570-69336589 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69337106-69337125 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG + chr7.2:69337361-69337380 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG + chr7.2:69337362-69337381 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69336641-69336660 MS.gene79156:CDS 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69336199-69336218 MS.gene79156:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG - chr7.2:69337371-69337390 MS.gene79156:CDS 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69337104-69337123 MS.gene79156:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69337107-69337126 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69337248-69337267 MS.gene79156:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69336539-69336558 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69336538-69336557 None:intergenic 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69336803-69336822 MS.gene79156:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69337220-69337239 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69336915-69336934 MS.gene79156:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69336062-69336081 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69336720-69336739 MS.gene79156:intron 30.0%
ATTCAAAAGGTGAAAGTCAT+AGG + chr7.2:69336838-69336857 None:intergenic 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69336195-69336214 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69336674-69336693 MS.gene79156:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69336851-69336870 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69336673-69336692 MS.gene79156:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69336721-69336740 MS.gene79156:intron 30.0%
TTCTTCCAAATGCAAAAGAT+GGG - chr7.2:69336988-69337007 MS.gene79156:CDS 30.0%
TTTCTTCCAAATGCAAAAGA+TGG - chr7.2:69336987-69337006 MS.gene79156:CDS 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69336851-69336870 MS.gene79156:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69336040-69336059 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69336537-69336556 None:intergenic 30.0%
! TATGACTTTCACCTTTTGAA+TGG - chr7.2:69336837-69336856 MS.gene79156:intron 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69336180-69336199 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69336072-69336091 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69337394-69337413 MS.gene79156:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69337389-69337408 MS.gene79156:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69336679-69336698 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69337178-69337197 MS.gene79156:CDS 35.0%
CCTACTTCCACTTTATCAAA+AGG + chr7.2:69337071-69337090 None:intergenic 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69336438-69336457 None:intergenic 35.0%
GAAGAAGCAGAGAACAAAAT+TGG + chr7.2:69335988-69336007 None:intergenic 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69336440-69336459 MS.gene79156:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69337130-69337149 MS.gene79156:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69336439-69336458 None:intergenic 35.0%
! CAAGCTTCCTTTTGATAAAG+TGG - chr7.2:69337061-69337080 MS.gene79156:CDS 35.0%
! CCTTTTGATAAAGTGGAAGT+AGG - chr7.2:69337068-69337087 MS.gene79156:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69336047-69336066 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69336452-69336471 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69336284-69336303 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:69337180-69337199 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69336496-69336515 MS.gene79156:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69337078-69337097 MS.gene79156:CDS 40.0%
ACTTCATGACTAGTGAGAAG+AGG - chr7.2:69336877-69336896 MS.gene79156:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69336095-69336114 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:69336233-69336252 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69336403-69336422 MS.gene79156:CDS 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69336774-69336793 MS.gene79156:intron 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69336356-69336375 MS.gene79156:CDS 40.0%
GTGTTGCAGTAACTCAGATT+CGG + chr7.2:69337042-69337061 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69336402-69336421 MS.gene79156:CDS 40.0%
TTGTCTTCGCCTTGCTTATA+AGG + chr7.2:69336945-69336964 None:intergenic 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69336363-69336382 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69336285-69336304 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:69337164-69337183 MS.gene79156:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69336283-69336302 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:69337161-69337180 MS.gene79156:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69336169-69336188 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69336168-69336187 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69336398-69336417 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69336395-69336414 MS.gene79156:CDS 45.0%
CTTCGCCTTGCTTATAAGGA+AGG + chr7.2:69336941-69336960 None:intergenic 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69336096-69336115 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69336085-69336104 None:intergenic 45.0%
GCAGAGAACAAAATTGGCGA+TGG + chr7.2:69335982-69336001 None:intergenic 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69337332-69337351 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69336147-69336166 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69336174-69336193 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:69337173-69337192 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69337137-69337156 MS.gene79156:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69336693-69336712 MS.gene79156:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69336781-69336800 MS.gene79156:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69336933-69336952 MS.gene79156:CDS 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69336313-69336332 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69336355-69336374 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69336725-69336744 MS.gene79156:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69336318-69336337 None:intergenic 45.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69337414-69337433 MS.gene79156:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69336001-69336020 MS.gene79156:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69337013-69337032 MS.gene79156:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69337017-69337036 None:intergenic 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69336742-69336761 MS.gene79156:intron 50.0%
TATGCTGAAGGAGCTAGGTG+TGG - chr7.2:69337142-69337161 MS.gene79156:CDS 50.0%
TCTGATGCAGTCAGTAGCAG+TGG - chr7.2:69337296-69337315 MS.gene79156:CDS 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:69336127-69336146 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69336154-69336173 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69336406-69336425 MS.gene79156:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69336348-69336367 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69336310-69336329 None:intergenic 50.0%
! GCTACTGACTGCATCAGATG+CGG + chr7.2:69337294-69337313 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69336996-69337015 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69336324-69336343 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69336327-69336346 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69336738-69336757 None:intergenic 55.0%
ACTGACTGCATCAGATGCGG+TGG + chr7.2:69337291-69337310 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69337413-69337432 MS.gene79156:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:69336124-69336143 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69336142-69336161 None:intergenic 55.0%
GCAGTCAGTAGCAGTGGCAT+GGG - chr7.2:69337302-69337321 MS.gene79156:CDS 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:69336138-69336157 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:69336248-69336267 MS.gene79156:CDS 55.0%
TGCAGTCAGTAGCAGTGGCA+TGG - chr7.2:69337301-69337320 MS.gene79156:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69336276-69336295 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69336387-69336406 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69336368-69336387 MS.gene79156:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69336342-69336361 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69337276-69337295 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69336257-69336276 MS.gene79156:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69336372-69336391 MS.gene79156:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69336371-69336390 MS.gene79156:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69336386-69336405 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69336256-69336275 MS.gene79156:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69335954 69337439 69335954 ID=MS.gene79156
chr7.2 mRNA 69335954 69337439 69335954 ID=MS.gene79156.t1;Parent=MS.gene79156
chr7.2 exon 69336876 69337439 69336876 ID=MS.gene79156.t1.exon1;Parent=MS.gene79156.t1
chr7.2 CDS 69336876 69337439 69336876 ID=cds.MS.gene79156.t1;Parent=MS.gene79156.t1
chr7.2 exon 69335954 69336730 69335954 ID=MS.gene79156.t1.exon2;Parent=MS.gene79156.t1
chr7.2 CDS 69335954 69336730 69335954 ID=cds.MS.gene79156.t1;Parent=MS.gene79156.t1
Gene Sequence

>MS.gene79156

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAATTTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGACTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAGGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGCGAAGACAAGCGTCAATTTACTATGTACTTTTTTCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGCAACACAAGCTTCCTTTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGTGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCAGTAGCAGTGGCATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene79156.t1

MRFSRKTIAIANFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKRQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLQHKLPFDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVSSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG