AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79160.t1 MTR_3g101030 80.000 425 68 3 39 446 5 429 0.0 669
MS.gene79160.t1 MTR_3g101050 71.652 448 73 7 1 445 1 397 0.0 593
MS.gene79160.t1 MTR_3g101010 80.157 383 72 2 66 446 9 389 0.0 592
MS.gene79160.t1 MTR_8g027395 67.792 385 116 3 64 446 19 397 0.0 514
MS.gene79160.t1 MTR_3g018740 69.191 383 111 3 65 444 8 386 0.0 513
MS.gene79160.t1 MTR_4g045707 67.092 392 121 5 57 446 3 388 4.86e-178 503
MS.gene79160.t1 MTR_8g461160 65.561 392 131 3 57 444 1 392 1.13e-175 497
MS.gene79160.t1 MTR_3g101180 64.573 398 129 4 57 444 3 398 3.83e-172 488
MS.gene79160.t1 MTR_8g027420 64.935 385 116 4 64 446 8 375 5.51e-171 484
MS.gene79160.t1 MTR_7g451890 59.553 403 157 3 48 446 2 402 3.64e-166 473
MS.gene79160.t1 MTR_7g047780 60.050 403 155 3 48 446 2 402 4.94e-165 471
MS.gene79160.t1 MTR_3g048000 62.887 388 119 6 60 444 25 390 5.21e-165 470
MS.gene79160.t1 MTR_7g050810 61.697 389 137 3 66 446 20 404 4.70e-164 468
MS.gene79160.t1 MTR_4g088525 65.395 367 119 4 81 445 8 368 9.68e-164 466
MS.gene79160.t1 MTR_7g050750 61.299 385 145 2 66 446 12 396 4.77e-162 462
MS.gene79160.t1 MTR_2g046030 63.117 385 129 5 66 444 9 386 1.76e-161 461
MS.gene79160.t1 MTR_2g045980 63.117 385 129 5 66 444 9 386 4.59e-161 460
MS.gene79160.t1 MTR_4g088535 64.508 386 111 6 58 441 5 366 5.39e-161 459
MS.gene79160.t1 MTR_3g101130 60.209 382 149 2 66 446 10 389 1.00e-158 454
MS.gene79160.t1 MTR_3g015620 60.938 384 120 6 66 444 20 378 1.36e-149 431
MS.gene79160.t1 MTR_3g100995 75.294 255 62 1 192 446 11 264 1.20e-138 398
MS.gene79160.t1 MTR_3g102920 58.047 379 119 3 70 444 66 408 2.90e-138 403
MS.gene79160.t1 MTR_3g101200 55.556 369 139 4 78 444 45 390 4.82e-126 371
MS.gene79160.t1 MTR_3g101190 54.076 368 102 4 83 446 8 312 1.50e-123 362
MS.gene79160.t1 MTR_3g018747 67.692 260 66 3 188 444 9 253 1.46e-118 347
MS.gene79160.t1 MTR_3g100010 57.453 322 89 2 85 373 38 344 7.72e-115 340
MS.gene79160.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 1.96e-111 331
MS.gene79160.t1 MTR_3g015760 58.123 277 106 4 173 444 8 279 2.50e-98 296
MS.gene79160.t1 MTR_3g111160 68.095 210 62 2 240 446 13 220 3.11e-89 271
MS.gene79160.t1 MTR_3g101110 60.251 239 63 4 188 420 68 280 1.62e-85 263
MS.gene79160.t1 MTR_3g100520 60.811 222 70 3 229 446 1 209 1.84e-85 260
MS.gene79160.t1 MTR_3g114310 41.250 400 208 11 64 446 21 410 8.67e-84 263
MS.gene79160.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 8.30e-83 253
MS.gene79160.t1 MTR_2g046410 63.547 203 66 3 248 444 147 347 7.73e-78 246
MS.gene79160.t1 MTR_3g101020 66.486 185 37 2 262 446 1 160 1.16e-76 236
MS.gene79160.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 2.75e-61 197
MS.gene79160.t1 MTR_3g101150 62.420 157 53 2 294 444 1 157 2.19e-59 191
MS.gene79160.t1 MTR_3g102870 57.764 161 66 1 251 409 1 161 5.41e-57 186
MS.gene79160.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 7.49e-44 160
MS.gene79160.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 8.10e-24 95.5
MS.gene79160.t1 MTR_6g046890 63.158 76 25 1 80 155 15 87 2.40e-19 84.3
MS.gene79160.t1 MTR_3g101140 61.538 65 24 1 383 446 52 116 8.18e-17 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79160.t1 AT1G47710 51.605 405 187 4 44 444 18 417 1.28e-143 417
MS.gene79160.t1 AT1G47710 53.141 382 174 3 67 444 10 390 1.82e-143 415
MS.gene79160.t1 AT3G45220 47.436 390 185 7 66 443 9 390 1.04e-117 350
MS.gene79160.t1 AT2G25240 47.135 384 187 7 66 443 9 382 2.86e-114 341
MS.gene79160.t1 AT2G26390 47.028 387 187 6 66 443 9 386 1.57e-113 339
MS.gene79160.t1 AT1G62170 42.547 369 181 5 85 445 88 433 1.78e-94 291
MS.gene79160.t1 AT2G14540 43.750 384 187 6 66 443 37 397 3.06e-92 285
MS.gene79160.t1 AT1G64030 42.188 384 195 7 66 443 9 371 6.65e-90 278
MS.gene79160.t1 AT2G35580 41.379 377 184 9 81 443 18 371 1.16e-87 272
MS.gene79160.t1 AT1G62170 39.055 402 181 6 85 445 88 466 1.84e-87 275
MS.gene79160.t1 AT1G64010 45.370 216 96 4 229 443 1 195 1.03e-57 189
MS.gene79160.t1 AT1G64010 45.274 201 88 4 244 443 2 181 1.27e-51 172
MS.gene79160.t1 AT1G62160 39.560 182 87 4 266 445 60 220 2.13e-34 128
MS.gene79160.t1 AT1G63280 51.304 115 52 2 188 300 8 120 6.95e-31 115
MS.gene79160.t1 AT1G51330 48.649 111 54 2 187 294 30 140 1.05e-22 95.5
MS.gene79160.t1 AT1G64020 31.532 111 73 3 70 179 13 121 3.47e-12 63.5

Find 103 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69299757 MS.gene79160:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69299858 MS.gene79160:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+69299589 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69300338 None:intergenic
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69300461 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69299427 MS.gene79160:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69299118 MS.gene79160:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69300215 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69299428 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.331976 7.2:-69299353 MS.gene79160:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69299855 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69300128 MS.gene79160:CDS
GAAGAAGCAGAGAACAAAAT+TGG 0.347022 7.2:+69300545 None:intergenic
GGCTACCGAATCTGAGTTAC+TGG 0.351430 7.2:-69299497 MS.gene79160:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69299453 MS.gene79160:CDS
TTCCTTCCAAATGCAAAAGA+TGG 0.367541 7.2:-69299544 MS.gene79160:CDS
GCCAACTTTGCTTGAGAAGC+TGG 0.369446 7.2:-69299518 MS.gene79160:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69299427 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69300353 None:intergenic
ATTCAAAAGGCGAAAATCAT+AGG 0.386713 7.2:+69299696 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.389726 7.2:+69299258 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69299142 MS.gene79160:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69300095 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69300094 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69300331 MS.gene79160:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69300081 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69299811 MS.gene79160:CDS
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69299137 MS.gene79160:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69299810 MS.gene79160:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.446012 7.2:-69299680 MS.gene79160:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-69299470 MS.gene79160:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69300448 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69299283 MS.gene79160:CDS
GCATTCACTAGCAGTGGAAT+GGG 0.451094 7.2:-69299229 MS.gene79160:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.453776 7.2:+69299683 None:intergenic
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:+69299172 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69300273 MS.gene79160:CDS
TGCATTCACTAGCAGTGGAA+TGG 0.472960 7.2:-69299230 MS.gene79160:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69300090 MS.gene79160:CDS
TCCTTCCAAATGCAAAAGAT+GGG 0.485174 7.2:-69299543 MS.gene79160:CDS
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+69300395 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69300127 MS.gene79160:CDS
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69300147 None:intergenic
GTCCTAAGCATCATCGCTGC+TGG 0.494673 7.2:-69300282 MS.gene79160:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69300249 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69299857 MS.gene79160:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69300220 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+69299593 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69300471 None:intergenic
GTGTTCCAGTAACTCAGATT+CGG 0.500783 7.2:+69299492 None:intergenic
GCCAGCTTCTCAAGCAAAGT+TGG 0.503025 7.2:+69299517 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69299117 MS.gene79160:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69300257 None:intergenic
AGCCAGCAGCGATGATGCTT+AGG 0.507534 7.2:+69300280 None:intergenic
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:-69299160 MS.gene79160:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:+69299173 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69300386 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69300248 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69299202 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69300364 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-69299598 MS.gene79160:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69300274 MS.gene79160:CDS
GGAGACGAGGATAGAGGCGA+AGG 0.534345 7.2:+69300191 None:intergenic
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69299750 MS.gene79160:CDS
AATGGCGGAGACGAGGATAG+AGG 0.534736 7.2:+69300185 None:intergenic
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69300223 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+69300391 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:-69299394 MS.gene79160:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69300158 MS.gene79160:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69300162 MS.gene79160:CDS
AGGACAACTTGTAGTGAAAG+TGG 0.550891 7.2:+69300300 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69299463 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69300437 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69300135 MS.gene79160:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69299463 MS.gene79160:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69300034 MS.gene79160:intron
GTCTCCGCCATTCTACAAAA+CGG 0.575265 7.2:-69300174 MS.gene79160:CDS
TTTGTAGAATGGCGGAGACG+AGG 0.576347 7.2:+69300178 None:intergenic
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69300250 None:intergenic
GTAAGACCTCCATTGCTGAA+AGG 0.581658 7.2:+69299361 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69299106 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69300159 MS.gene79160:CDS
TCTATTGCATTCACTAGCAG+TGG 0.592901 7.2:-69299235 MS.gene79160:CDS
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69300365 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69300206 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69299401 MS.gene79160:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69300146 None:intergenic
GCAGAGAACAAAATTGGCGA+TGG 0.606690 7.2:+69300551 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69300379 None:intergenic
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69300529 MS.gene79160:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69300438 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69300124 MS.gene79160:CDS
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+69300406 None:intergenic
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69299838 MS.gene79160:CDS
GGTCTGTCGACAACTTAACT+CGG 0.656685 7.2:-69299789 MS.gene79160:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69300359 None:intergenic
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69300209 None:intergenic
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+69300409 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:-69299389 MS.gene79160:CDS
AGTGAATGCAATAGATGCGG+TGG 0.701437 7.2:+69299243 None:intergenic
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69300135 None:intergenic
GCTAGTGAATGCAATAGATG+CGG 0.744397 7.2:+69299240 None:intergenic
AAGTTGTCGACAGACCCTAG+AGG 0.761678 7.2:+69299796 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69299791-69299810 MS.gene79160:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69299730-69299749 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69300265-69300284 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG + chr7.2:69300520-69300539 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG + chr7.2:69300521-69300540 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69299800-69299819 MS.gene79160:CDS 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69299359-69299378 MS.gene79160:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG - chr7.2:69300530-69300549 MS.gene79160:CDS 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69300263-69300282 MS.gene79160:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69300266-69300285 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69300407-69300426 MS.gene79160:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69299699-69299718 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69299698-69299717 None:intergenic 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69299962-69299981 MS.gene79160:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69300379-69300398 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69300074-69300093 MS.gene79160:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69299222-69299241 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69299879-69299898 MS.gene79160:intron 30.0%
ATTCAAAAGGCGAAAATCAT+AGG + chr7.2:69299997-69300016 None:intergenic 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69299355-69299374 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69299833-69299852 MS.gene79160:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69300010-69300029 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69299832-69299851 MS.gene79160:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69299880-69299899 MS.gene79160:intron 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:69300104-69300123 None:intergenic 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69300010-69300029 MS.gene79160:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69299200-69299219 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69299697-69299716 None:intergenic 30.0%
! TATGATTTTCGCCTTTTGAA+TGG - chr7.2:69299996-69300015 MS.gene79160:intron 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69299340-69299359 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69299232-69299251 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69300553-69300572 MS.gene79160:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69300548-69300567 MS.gene79160:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69299838-69299857 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69300337-69300356 MS.gene79160:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69299598-69299617 None:intergenic 35.0%
GAAGAAGCAGAGAACAAAAT+TGG + chr7.2:69299148-69299167 None:intergenic 35.0%
TCCTTCCAAATGCAAAAGAT+GGG - chr7.2:69300147-69300166 MS.gene79160:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69299600-69299619 MS.gene79160:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69300289-69300308 MS.gene79160:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69299599-69299618 None:intergenic 35.0%
TTCCTTCCAAATGCAAAAGA+TGG - chr7.2:69300146-69300165 MS.gene79160:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69299207-69299226 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69299612-69299631 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69299444-69299463 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69299656-69299675 MS.gene79160:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69300237-69300256 MS.gene79160:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69299255-69299274 None:intergenic 40.0%
AGGACAACTTGTAGTGAAAG+TGG + chr7.2:69299393-69299412 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69299563-69299582 MS.gene79160:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69300220-69300239 MS.gene79160:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69300230-69300249 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69300227-69300246 MS.gene79160:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:69300100-69300119 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69299933-69299952 MS.gene79160:intron 40.0%
GCTAGTGAATGCAATAGATG+CGG + chr7.2:69300453-69300472 None:intergenic 40.0%
GTGTTCCAGTAACTCAGATT+CGG + chr7.2:69300201-69300220 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69299562-69299581 MS.gene79160:CDS 40.0%
TCTATTGCATTCACTAGCAG+TGG - chr7.2:69300455-69300474 MS.gene79160:CDS 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69299445-69299464 None:intergenic 40.0%
! GTTTTACCTTTCAGCAATGG+AGG - chr7.2:69300323-69300342 MS.gene79160:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69299443-69299462 None:intergenic 40.0%
!! GTGGTTTTACCTTTCAGCAA+TGG - chr7.2:69300320-69300339 MS.gene79160:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69299329-69299348 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69299328-69299347 None:intergenic 45.0%
AGTGAATGCAATAGATGCGG+TGG + chr7.2:69300450-69300469 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69299558-69299577 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69299555-69299574 MS.gene79160:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69299256-69299275 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69299245-69299264 None:intergenic 45.0%
GCAGAGAACAAAATTGGCGA+TGG + chr7.2:69299142-69299161 None:intergenic 45.0%
GCATTCACTAGCAGTGGAAT+GGG - chr7.2:69300461-69300480 MS.gene79160:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69300491-69300510 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69299307-69299326 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69299334-69299353 None:intergenic 45.0%
GGTCTGTCGACAACTTAACT+CGG - chr7.2:69299901-69299920 MS.gene79160:intron 45.0%
GTAAGACCTCCATTGCTGAA+AGG + chr7.2:69300332-69300351 None:intergenic 45.0%
GTCTCCGCCATTCTACAAAA+CGG - chr7.2:69299516-69299535 MS.gene79160:CDS 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69300296-69300315 MS.gene79160:CDS 45.0%
TGCATTCACTAGCAGTGGAA+TGG - chr7.2:69300460-69300479 MS.gene79160:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69299852-69299871 MS.gene79160:CDS 45.0%
! AGCACCGTTTTGTAGAATGG+CGG + chr7.2:69299523-69299542 None:intergenic 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69299940-69299959 MS.gene79160:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69300092-69300111 MS.gene79160:CDS 45.0%
! GCCCATCTTTTGCATTTGGA+AGG + chr7.2:69300151-69300170 None:intergenic 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69299473-69299492 None:intergenic 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69299478-69299497 None:intergenic 45.0%
AAGTTGTCGACAGACCCTAG+AGG + chr7.2:69299897-69299916 None:intergenic 50.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69300573-69300592 MS.gene79160:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69299161-69299180 MS.gene79160:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69300172-69300191 MS.gene79160:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69300176-69300195 None:intergenic 50.0%
GGCTACCGAATCTGAGTTAC+TGG - chr7.2:69300193-69300212 MS.gene79160:CDS 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:69299287-69299306 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69299314-69299333 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69299566-69299585 MS.gene79160:CDS 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69299470-69299489 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69300155-69300174 None:intergenic 50.0%
! TTTGTAGAATGGCGGAGACG+AGG + chr7.2:69299515-69299534 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69299484-69299503 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69299487-69299506 None:intergenic 50.0%
!!! GGGAGCACCGTTTTGTAGAA+TGG + chr7.2:69299526-69299545 None:intergenic 50.0%
AGCCAGCAGCGATGATGCTT+AGG + chr7.2:69299413-69299432 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69300572-69300591 MS.gene79160:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:69299284-69299303 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69299302-69299321 None:intergenic 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:69299298-69299317 None:intergenic 55.0%
GTCCTAAGCATCATCGCTGC+TGG - chr7.2:69299408-69299427 MS.gene79160:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG - chr7.2:69300301-69300320 MS.gene79160:CDS 55.0%
! AATGGCGGAGACGAGGATAG+AGG + chr7.2:69299508-69299527 None:intergenic 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69299436-69299455 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69299547-69299566 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69299528-69299547 MS.gene79160:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69299502-69299521 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69300435-69300454 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69299417-69299436 MS.gene79160:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69299532-69299551 MS.gene79160:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69299531-69299550 MS.gene79160:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69299546-69299565 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69299416-69299435 MS.gene79160:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69299114 69300598 69299114 ID=MS.gene79160
chr7.2 mRNA 69299114 69300598 69299114 ID=MS.gene79160.t1;Parent=MS.gene79160
chr7.2 exon 69300035 69300598 69300035 ID=MS.gene79160.t1.exon1;Parent=MS.gene79160.t1
chr7.2 CDS 69300035 69300598 69300035 ID=cds.MS.gene79160.t1;Parent=MS.gene79160.t1
chr7.2 exon 69299114 69299890 69299114 ID=MS.gene79160.t1.exon2;Parent=MS.gene79160.t1
chr7.2 CDS 69299114 69299890 69299114 ID=cds.MS.gene79160.t1;Parent=MS.gene79160.t1
Gene Sequence

>MS.gene79160

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAATTTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTCCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGCCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCTGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCGCCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTCCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTACCGAATCTGAGTTACTGGAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCAGCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTATTGCATTCACTAGCAGTGGAATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene79160.t1

MRFSRKTIAIANFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSAILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFRLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLATESELLEHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFSNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASIAFTSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG