AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79161

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79161.t1 MTR_3g101030 79.529 425 70 3 39 446 5 429 0.0 666
MS.gene79161.t1 MTR_3g101050 72.321 448 70 7 1 445 1 397 0.0 602
MS.gene79161.t1 MTR_3g101010 79.896 383 73 2 66 446 9 389 0.0 588
MS.gene79161.t1 MTR_8g027395 68.052 385 115 3 64 446 19 397 0.0 518
MS.gene79161.t1 MTR_3g018740 69.713 383 109 3 65 444 8 386 0.0 517
MS.gene79161.t1 MTR_4g045707 66.837 392 122 5 57 446 3 388 2.96e-179 506
MS.gene79161.t1 MTR_8g461160 65.561 392 131 2 57 444 1 392 1.38e-177 502
MS.gene79161.t1 MTR_8g027420 65.195 385 115 4 64 446 8 375 8.58e-173 489
MS.gene79161.t1 MTR_3g101180 64.322 398 130 4 57 444 3 398 2.92e-172 489
MS.gene79161.t1 MTR_3g048000 63.402 388 117 5 60 444 25 390 3.87e-168 478
MS.gene79161.t1 MTR_7g451890 60.050 403 155 3 48 446 2 402 1.18e-167 477
MS.gene79161.t1 MTR_7g047780 60.050 403 155 3 48 446 2 402 2.48e-165 471
MS.gene79161.t1 MTR_4g088525 65.123 367 120 3 81 445 8 368 4.55e-165 469
MS.gene79161.t1 MTR_4g088535 64.767 386 110 6 58 441 5 366 3.02e-164 468
MS.gene79161.t1 MTR_2g046030 63.636 385 127 5 66 444 9 386 4.68e-164 468
MS.gene79161.t1 MTR_7g050810 61.440 389 138 3 66 446 20 404 5.42e-164 468
MS.gene79161.t1 MTR_7g050750 61.299 385 145 2 66 446 12 396 2.22e-163 466
MS.gene79161.t1 MTR_2g045980 63.377 385 128 5 66 444 9 386 7.92e-162 462
MS.gene79161.t1 MTR_3g101130 60.209 382 149 2 66 446 10 389 3.72e-160 457
MS.gene79161.t1 MTR_3g015620 60.938 384 120 6 66 444 20 378 3.06e-150 432
MS.gene79161.t1 MTR_3g102920 59.211 380 113 6 70 444 66 408 5.31e-141 410
MS.gene79161.t1 MTR_3g100995 75.294 255 62 1 192 446 11 264 1.71e-139 400
MS.gene79161.t1 MTR_3g101200 55.285 369 140 4 78 444 45 390 7.93e-127 373
MS.gene79161.t1 MTR_3g101190 54.076 368 102 4 83 446 8 312 3.86e-125 365
MS.gene79161.t1 MTR_3g018747 68.462 260 64 3 188 444 9 253 6.67e-120 350
MS.gene79161.t1 MTR_3g100010 57.453 322 89 2 85 373 38 344 2.66e-115 342
MS.gene79161.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 1.13e-111 332
MS.gene79161.t1 MTR_3g015760 57.762 277 107 4 173 444 8 279 3.73e-98 296
MS.gene79161.t1 MTR_3g111160 68.095 210 62 2 240 446 13 220 4.08e-89 270
MS.gene79161.t1 MTR_3g100520 60.360 222 71 3 229 446 1 209 1.03e-86 264
MS.gene79161.t1 MTR_3g101110 59.833 239 64 4 188 420 68 280 1.22e-86 266
MS.gene79161.t1 MTR_3g114310 42.250 400 204 12 64 446 21 410 1.17e-85 268
MS.gene79161.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 1.94e-84 258
MS.gene79161.t1 MTR_2g046410 64.532 203 64 3 248 444 147 347 4.26e-80 252
MS.gene79161.t1 MTR_3g101020 65.946 185 38 2 262 446 1 160 7.54e-76 234
MS.gene79161.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 2.69e-61 197
MS.gene79161.t1 MTR_3g101150 61.783 157 54 2 294 444 1 157 8.02e-60 192
MS.gene79161.t1 MTR_3g102870 57.764 161 66 1 251 409 1 161 2.70e-57 187
MS.gene79161.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 8.90e-44 160
MS.gene79161.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 7.71e-24 95.5
MS.gene79161.t1 MTR_6g046890 63.158 76 25 1 80 155 15 87 2.63e-19 84.3
MS.gene79161.t1 MTR_3g101140 63.077 65 23 1 383 446 52 116 1.10e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79161.t1 AT1G47710 51.111 405 189 4 44 444 18 417 3.20e-140 408
MS.gene79161.t1 AT1G47710 52.618 382 176 3 67 444 10 390 4.96e-140 407
MS.gene79161.t1 AT3G45220 47.558 389 186 5 66 443 9 390 3.59e-120 356
MS.gene79161.t1 AT2G25240 47.396 384 186 7 66 443 9 382 8.06e-116 345
MS.gene79161.t1 AT2G26390 47.028 387 187 6 66 443 9 386 3.92e-114 340
MS.gene79161.t1 AT1G62170 42.234 367 185 4 85 445 88 433 1.12e-94 292
MS.gene79161.t1 AT2G14540 44.010 384 186 6 66 443 37 397 1.45e-93 288
MS.gene79161.t1 AT1G64030 42.188 384 195 7 66 443 9 371 5.57e-91 281
MS.gene79161.t1 AT2G35580 41.555 373 189 8 81 443 18 371 9.12e-89 275
MS.gene79161.t1 AT1G62170 38.750 400 185 5 85 445 88 466 9.38e-88 275
MS.gene79161.t1 AT1G64010 46.296 216 94 4 229 443 1 195 2.13e-59 193
MS.gene79161.t1 AT1G64010 46.269 201 86 4 244 443 2 181 2.10e-53 177
MS.gene79161.t1 AT1G62160 39.560 182 87 4 266 445 60 220 3.15e-34 127
MS.gene79161.t1 AT1G63280 52.174 115 51 2 188 300 8 120 4.32e-32 119
MS.gene79161.t1 AT1G51330 49.550 111 53 2 187 294 30 140 6.28e-24 99.0
MS.gene79161.t1 AT1G64020 31.532 111 73 3 70 179 13 121 3.27e-12 63.9

Find 103 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69288887 MS.gene79161:CDS
ATCGATTTGGATATTGTTTA+TGG 0.196591 7.2:+69289591 None:intergenic
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69288988 MS.gene79161:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+69288719 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69289468 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-69288483 MS.gene79161:CDS
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69288557 MS.gene79161:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69288248 MS.gene79161:CDS
GAAGAAGCAGAGAACAAATT+TGG 0.317759 7.2:+69289675 None:intergenic
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69289345 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69288558 None:intergenic
ACTGAAACAATCATCTTTGT+TGG 0.329190 7.2:-69288272 MS.gene79161:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69288985 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69289258 MS.gene79161:CDS
GGCTACCGAATCTGAGTTAC+TGG 0.351430 7.2:-69288627 MS.gene79161:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69288583 MS.gene79161:CDS
TTCCTTCCAAATGCAAAAGA+TGG 0.367541 7.2:-69288674 MS.gene79161:CDS
GCCAACTTTGCTTGAGAAGC+TGG 0.369446 7.2:-69288648 MS.gene79161:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69288557 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69289483 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+69288388 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+69288826 None:intergenic
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69289225 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69289224 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69289461 MS.gene79161:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69289211 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69288941 MS.gene79161:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69288810 MS.gene79161:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69288813 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69288267 MS.gene79161:CDS
TCTCTAATCATAAACAAGAA+AGG 0.443816 7.2:+69288302 None:intergenic
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69288940 MS.gene79161:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-69288600 MS.gene79161:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69289578 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69288413 MS.gene79161:CDS
ATATTGTTTATGGTTCTCTT+CGG 0.464401 7.2:+69289601 None:intergenic
CTCTAATCATAAACAAGAAA+GGG 0.468439 7.2:+69288303 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69289403 MS.gene79161:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69289220 MS.gene79161:CDS
TCCTTCCAAATGCAAAAGAT+GGG 0.485174 7.2:-69288673 MS.gene79161:CDS
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+69289525 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69289257 MS.gene79161:CDS
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69289277 None:intergenic
GTCCTAAGCATCATCGCTGC+TGG 0.494673 7.2:-69289412 MS.gene79161:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69289379 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69288987 MS.gene79161:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69289350 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+69288723 None:intergenic
GTGTTCCAGTAACTCAGATT+CGG 0.500783 7.2:+69288622 None:intergenic
GCCAGCTTCTCAAGCAAAGT+TGG 0.503025 7.2:+69288647 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69288247 MS.gene79161:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69289387 None:intergenic
AGCCAGCAGCGATGATGCTT+AGG 0.507534 7.2:+69289410 None:intergenic
TGCAGTCAGTAGCAGTGGCA+TGG 0.511284 7.2:-69288360 MS.gene79161:CDS
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69289516 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69289378 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69288332 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69289494 None:intergenic
GCAGTCAGTAGCAGTGGCAT+GGG 0.532869 7.2:-69288359 MS.gene79161:CDS
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-69288728 MS.gene79161:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69289404 MS.gene79161:CDS
GGAGACGAGGATAGAGGCGA+AGG 0.534345 7.2:+69289321 None:intergenic
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69288880 MS.gene79161:CDS
AATGGCGGAGACGAGGATAG+AGG 0.534736 7.2:+69289315 None:intergenic
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69289353 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+69289521 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:-69288524 MS.gene79161:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69289288 MS.gene79161:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69289292 MS.gene79161:CDS
AGGACAACTTGTAGTGAAAG+TGG 0.550891 7.2:+69289430 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69288593 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69289567 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69289265 MS.gene79161:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69288593 MS.gene79161:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69289164 MS.gene79161:intron
GTCTCCGCCATTCTACAAAA+CGG 0.575265 7.2:-69289304 MS.gene79161:CDS
TTTGTAGAATGGCGGAGACG+AGG 0.576347 7.2:+69289308 None:intergenic
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69289380 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+69288491 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69288236 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69289289 MS.gene79161:CDS
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69289495 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69289336 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69288531 MS.gene79161:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69289276 None:intergenic
GCAGAGAACAAATTTGGCGA+TGG 0.609644 7.2:+69289681 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69289509 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-69288936 MS.gene79161:CDS
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69289659 MS.gene79161:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69289568 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69289254 MS.gene79161:CDS
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+69289536 None:intergenic
TCTGATGCAGTCAGTAGCAG+TGG 0.636122 7.2:-69288365 MS.gene79161:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69288968 MS.gene79161:CDS
ACTGACTGCATCAGATGCGG+TGG 0.641619 7.2:+69288373 None:intergenic
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69289489 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69288919 MS.gene79161:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69289339 None:intergenic
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+69289539 None:intergenic
GCTACTGACTGCATCAGATG+CGG 0.675085 7.2:+69288370 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:-69288519 MS.gene79161:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69289265 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69288926 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69288921-69288940 MS.gene79161:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69288860-69288879 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69289395-69289414 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69288930-69288949 MS.gene79161:CDS 20.0%
!!! GAATGATTTTAGAAATGAAT+AGG + chr7.2:69289509-69289528 None:intergenic 20.0%
! ATATTGTTTATGGTTCTCTT+CGG + chr7.2:69288352-69288371 None:intergenic 25.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69288489-69288508 MS.gene79161:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:69289127-69289146 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69289393-69289412 MS.gene79161:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69289396-69289415 None:intergenic 25.0%
! CTCTAATCATAAACAAGAAA+GGG + chr7.2:69289650-69289669 None:intergenic 25.0%
! TCTCTAATCATAAACAAGAA+AGG + chr7.2:69289651-69289670 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69289537-69289556 MS.gene79161:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69288829-69288848 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69288828-69288847 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:69289126-69289145 MS.gene79161:intron 25.0%
!!! ATCGATTTGGATATTGTTTA+TGG + chr7.2:69288362-69288381 None:intergenic 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69289092-69289111 MS.gene79161:intron 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69289204-69289223 MS.gene79161:CDS 25.0%
ACTGAAACAATCATCTTTGT+TGG - chr7.2:69289678-69289697 MS.gene79161:CDS 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69289009-69289028 MS.gene79161:intron 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69288485-69288504 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69288963-69288982 MS.gene79161:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69289140-69289159 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69288962-69288981 MS.gene79161:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69289010-69289029 MS.gene79161:intron 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:69289234-69289253 None:intergenic 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69289140-69289159 MS.gene79161:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69288330-69288349 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69288827-69288846 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69288470-69288489 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69289683-69289702 MS.gene79161:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69288968-69288987 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69289467-69289486 MS.gene79161:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69288728-69288747 None:intergenic 35.0%
GAAGAAGCAGAGAACAAATT+TGG + chr7.2:69288278-69288297 None:intergenic 35.0%
TCCTTCCAAATGCAAAAGAT+GGG - chr7.2:69289277-69289296 MS.gene79161:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69288730-69288749 MS.gene79161:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69289419-69289438 MS.gene79161:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69288729-69288748 None:intergenic 35.0%
TTCCTTCCAAATGCAAAAGA+TGG - chr7.2:69289276-69289295 MS.gene79161:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69288337-69288356 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69288742-69288761 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69288574-69288593 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:69289469-69289488 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69288786-69288805 MS.gene79161:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69289367-69289386 MS.gene79161:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69288385-69288404 None:intergenic 40.0%
AGGACAACTTGTAGTGAAAG+TGG + chr7.2:69288523-69288542 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69288693-69288712 MS.gene79161:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69289350-69289369 MS.gene79161:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69289360-69289379 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69289357-69289376 MS.gene79161:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:69289230-69289249 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69289063-69289082 MS.gene79161:intron 40.0%
GTGTTCCAGTAACTCAGATT+CGG + chr7.2:69289331-69289350 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69288692-69288711 MS.gene79161:CDS 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69288575-69288594 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:69289453-69289472 MS.gene79161:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69288573-69288592 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:69289450-69289469 MS.gene79161:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69288459-69288478 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69288458-69288477 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69288688-69288707 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69288685-69288704 MS.gene79161:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69288386-69288405 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69288375-69288394 None:intergenic 45.0%
GCAGAGAACAAATTTGGCGA+TGG + chr7.2:69288272-69288291 None:intergenic 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69289621-69289640 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69288437-69288456 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69288464-69288483 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:69289462-69289481 None:intergenic 45.0%
GTCTCCGCCATTCTACAAAA+CGG - chr7.2:69288646-69288665 MS.gene79161:CDS 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69289426-69289445 MS.gene79161:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69288982-69289001 MS.gene79161:CDS 45.0%
! AGCACCGTTTTGTAGAATGG+CGG + chr7.2:69288653-69288672 None:intergenic 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69289070-69289089 MS.gene79161:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69289222-69289241 MS.gene79161:CDS 45.0%
! GCCCATCTTTTGCATTTGGA+AGG + chr7.2:69289281-69289300 None:intergenic 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69288603-69288622 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69289014-69289033 MS.gene79161:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69288608-69288627 None:intergenic 45.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69289703-69289722 MS.gene79161:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69288291-69288310 MS.gene79161:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69289302-69289321 MS.gene79161:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69289306-69289325 None:intergenic 50.0%
GGCTACCGAATCTGAGTTAC+TGG - chr7.2:69289323-69289342 MS.gene79161:CDS 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69289031-69289050 MS.gene79161:intron 50.0%
TCTGATGCAGTCAGTAGCAG+TGG - chr7.2:69289585-69289604 MS.gene79161:CDS 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:69288417-69288436 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69288444-69288463 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69288696-69288715 MS.gene79161:CDS 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69288600-69288619 None:intergenic 50.0%
! GCTACTGACTGCATCAGATG+CGG + chr7.2:69289583-69289602 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69289285-69289304 None:intergenic 50.0%
! TTTGTAGAATGGCGGAGACG+AGG + chr7.2:69288645-69288664 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69288614-69288633 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69288617-69288636 None:intergenic 50.0%
!!! GGGAGCACCGTTTTGTAGAA+TGG + chr7.2:69288656-69288675 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69289027-69289046 None:intergenic 55.0%
ACTGACTGCATCAGATGCGG+TGG + chr7.2:69289580-69289599 None:intergenic 55.0%
AGCCAGCAGCGATGATGCTT+AGG + chr7.2:69288543-69288562 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69289702-69289721 MS.gene79161:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:69288414-69288433 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69288432-69288451 None:intergenic 55.0%
GCAGTCAGTAGCAGTGGCAT+GGG - chr7.2:69289591-69289610 MS.gene79161:CDS 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:69288428-69288447 None:intergenic 55.0%
GTCCTAAGCATCATCGCTGC+TGG - chr7.2:69288538-69288557 MS.gene79161:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG - chr7.2:69289431-69289450 MS.gene79161:CDS 55.0%
TGCAGTCAGTAGCAGTGGCA+TGG - chr7.2:69289590-69289609 MS.gene79161:CDS 55.0%
! AATGGCGGAGACGAGGATAG+AGG + chr7.2:69288638-69288657 None:intergenic 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69288566-69288585 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69288677-69288696 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69288658-69288677 MS.gene79161:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69288632-69288651 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69289565-69289584 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69288547-69288566 MS.gene79161:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69288662-69288681 MS.gene79161:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69288661-69288680 MS.gene79161:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69288676-69288695 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69288546-69288565 MS.gene79161:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69288244 69289728 69288244 ID=MS.gene79161
chr7.2 mRNA 69288244 69289728 69288244 ID=MS.gene79161.t1;Parent=MS.gene79161
chr7.2 exon 69289165 69289728 69289165 ID=MS.gene79161.t1.exon1;Parent=MS.gene79161.t1
chr7.2 CDS 69289165 69289728 69289165 ID=cds.MS.gene79161.t1;Parent=MS.gene79161.t1
chr7.2 exon 69288244 69289020 69288244 ID=MS.gene79161.t1.exon2;Parent=MS.gene79161.t1
chr7.2 CDS 69288244 69289020 69288244 ID=cds.MS.gene79161.t1;Parent=MS.gene79161.t1
Gene Sequence

>MS.gene79161

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAATTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAACAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTCCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGCCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTCCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTACCGAATCTGAGTTACTGGAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATTCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCAGTAGCAGTGGCATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTAGAGAAGAATTGACTGAAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene79161.t1

MRFSRKTIAIAKFVLCFFVLNIVACLIILDPKVIFPKRTINNIQIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSAILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLATESELLEHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLFISKIIHKSFIDVNEEGTEAVAATASDAVSSSGMGFPTRLDFVADHPFLFMIREELTETIIFVGQVLNPLAG