AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79165

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79165.t1 MTR_3g101030 76.000 425 58 4 39 419 5 429 0.0 625
MS.gene79165.t1 MTR_3g101050 67.188 448 66 8 1 418 1 397 0.0 540
MS.gene79165.t1 MTR_3g101010 74.151 383 68 3 66 419 9 389 0.0 533
MS.gene79165.t1 MTR_3g018740 63.708 383 105 4 65 417 8 386 3.95e-162 461
MS.gene79165.t1 MTR_8g027395 60.750 400 119 5 49 419 7 397 9.13e-162 461
MS.gene79165.t1 MTR_8g461160 60.714 392 123 3 57 417 1 392 2.43e-159 454
MS.gene79165.t1 MTR_4g045707 61.990 392 114 6 57 419 3 388 1.13e-158 452
MS.gene79165.t1 MTR_8g027420 59.481 385 110 5 64 419 8 375 2.70e-151 433
MS.gene79165.t1 MTR_3g101180 58.794 398 125 5 57 417 3 398 4.68e-151 434
MS.gene79165.t1 MTR_3g048000 57.990 388 111 6 60 417 25 390 1.56e-146 422
MS.gene79165.t1 MTR_4g088525 59.946 367 112 4 81 418 8 368 5.07e-146 420
MS.gene79165.t1 MTR_2g046030 58.961 385 118 6 66 417 9 386 6.38e-145 418
MS.gene79165.t1 MTR_2g045980 58.961 385 118 6 66 417 9 386 3.07e-144 416
MS.gene79165.t1 MTR_7g451890 56.104 385 138 3 66 419 18 402 9.73e-144 415
MS.gene79165.t1 MTR_3g101130 56.218 386 138 4 62 419 7 389 1.03e-142 412
MS.gene79165.t1 MTR_7g050810 56.041 389 132 4 66 419 20 404 1.59e-142 412
MS.gene79165.t1 MTR_7g050750 55.584 385 140 3 66 419 12 396 1.26e-141 410
MS.gene79165.t1 MTR_7g047780 56.104 385 138 3 66 419 18 402 3.46e-141 409
MS.gene79165.t1 MTR_4g088535 58.290 386 108 7 58 414 5 366 1.36e-139 404
MS.gene79165.t1 MTR_3g102920 62.040 353 119 6 70 417 66 408 5.10e-138 401
MS.gene79165.t1 MTR_3g015620 55.469 384 114 7 66 417 20 378 8.51e-130 379
MS.gene79165.t1 MTR_3g100995 67.059 255 56 2 192 419 11 264 1.41e-115 338
MS.gene79165.t1 MTR_3g101200 49.864 369 133 5 78 417 45 390 4.67e-105 316
MS.gene79165.t1 MTR_3g101190 48.370 368 96 5 83 419 8 312 3.32e-103 309
MS.gene79165.t1 MTR_3g018747 59.231 260 61 4 188 417 9 253 6.19e-97 291
MS.gene79165.t1 MTR_3g100010 51.553 322 81 3 85 346 38 344 1.83e-95 290
MS.gene79165.t1 MTR_3g111160 68.571 210 61 2 213 419 13 220 1.60e-90 273
MS.gene79165.t1 MTR_7g050830 48.220 309 102 3 68 329 22 319 8.47e-90 275
MS.gene79165.t1 MTR_3g100520 60.092 218 70 3 206 419 5 209 3.53e-83 254
MS.gene79165.t1 MTR_2g046410 64.532 203 64 3 221 417 147 347 1.06e-79 250
MS.gene79165.t1 MTR_3g015760 50.542 277 100 5 173 417 8 279 1.01e-78 245
MS.gene79165.t1 MTR_3g101110 60.563 213 77 4 188 393 68 280 1.07e-77 242
MS.gene79165.t1 MTR_3g101020 66.486 185 37 2 235 419 1 160 2.36e-76 234
MS.gene79165.t1 MTR_3g114310 39.250 400 189 13 64 419 21 410 2.25e-72 233
MS.gene79165.t1 MTR_3g099970 54.872 195 44 3 188 354 20 198 2.57e-61 197
MS.gene79165.t1 MTR_3g101150 61.783 157 54 2 267 417 1 157 3.13e-59 190
MS.gene79165.t1 MTR_3g102870 57.143 161 67 1 224 382 1 161 3.01e-56 183
MS.gene79165.t1 MTR_3g100990 65.354 127 42 1 66 192 9 133 1.99e-44 161
MS.gene79165.t1 MTR_3g111150 54.610 141 38 2 66 206 3 117 4.29e-40 141
MS.gene79165.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 1.56e-24 97.1
MS.gene79165.t1 MTR_6g046890 63.636 77 25 1 79 155 14 87 5.09e-20 86.3
MS.gene79165.t1 MTR_3g101140 63.077 65 23 1 356 419 52 116 1.04e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79165.t1 AT1G47710 47.160 405 178 6 44 417 18 417 2.47e-121 359
MS.gene79165.t1 AT1G47710 47.704 392 170 5 57 417 3 390 3.85e-121 357
MS.gene79165.t1 AT3G45220 44.473 389 171 6 66 416 9 390 4.04e-106 319
MS.gene79165.t1 AT2G25240 44.271 384 171 7 66 416 9 382 3.64e-100 303
MS.gene79165.t1 AT2G26390 43.669 387 173 6 66 416 9 386 6.87e-100 303
MS.gene79165.t1 AT1G62170 38.420 367 172 5 85 418 88 433 5.39e-78 248
MS.gene79165.t1 AT2G14540 40.104 384 174 7 66 416 37 397 2.44e-76 243
MS.gene79165.t1 AT2G35580 37.634 372 178 7 81 416 18 371 6.43e-76 241
MS.gene79165.t1 AT1G64030 38.281 384 183 8 66 416 9 371 2.42e-75 240
MS.gene79165.t1 AT1G62170 35.250 400 172 6 85 418 88 466 3.00e-71 232
MS.gene79165.t1 AT1G64010 46.479 213 92 4 205 416 4 195 8.82e-58 188
MS.gene79165.t1 AT1G64010 47.264 201 84 4 217 416 2 181 1.14e-54 179
MS.gene79165.t1 AT1G62160 40.659 182 85 4 239 418 60 220 1.57e-35 130
MS.gene79165.t1 AT1G63280 38.261 115 40 3 188 273 8 120 7.16e-16 73.9
MS.gene79165.t1 AT1G64020 32.432 111 72 3 70 179 13 121 2.11e-12 64.3

Find 95 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69262670 MS.gene79165:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+69262399 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-69262163 MS.gene79165:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69263273 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69262237 MS.gene79165:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69261928 MS.gene79165:CDS
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69262238 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-69262328 MS.gene79165:CDS
ACTGAAACAATCATCTTTGT+TGG 0.329190 7.2:-69261952 MS.gene79165:CDS
GGCTTCCGAATCTGAGTTAC+TGG 0.336274 7.2:-69262307 MS.gene79165:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69262667 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69262940 MS.gene79165:CDS
GAAGAAGCAGAGAACAAAAT+TGG 0.347022 7.2:+69263357 None:intergenic
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69262263 MS.gene79165:CDS
TTCCTTCCAAATGCAAAAGA+TGG 0.367541 7.2:-69262354 MS.gene79165:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69262237 None:intergenic
GTTGAGTTGATCGGTCGATT+TGG 0.382394 7.2:+69263027 None:intergenic
TTCTTTAGAGAAAAGATGTT+TGG 0.384056 7.2:+69263165 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+69262068 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+69262506 None:intergenic
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69262907 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69262906 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69263143 MS.gene79165:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69262893 None:intergenic
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69262490 MS.gene79165:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69262493 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69261947 MS.gene79165:CDS
TCTCTAATCATAAACAAGAA+AGG 0.443816 7.2:+69261982 None:intergenic
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69263260 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69262093 MS.gene79165:CDS
GTTGATCGGTCGATTTGGAT+TGG 0.460855 7.2:+69263032 None:intergenic
CTCTAATCATAAACAAGAAA+GGG 0.468439 7.2:+69261983 None:intergenic
CAAGCTTCCTCTTGATAAAG+TGG 0.471637 7.2:-69262280 MS.gene79165:CDS
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69263085 MS.gene79165:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69262902 MS.gene79165:CDS
TCCTTCCAAATGCAAAAGAT+GGG 0.485174 7.2:-69262353 MS.gene79165:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+69262327 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69262939 MS.gene79165:CDS
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69262959 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-69263094 MS.gene79165:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69263061 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69262669 MS.gene79165:CDS
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+69262403 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69263283 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69261927 MS.gene79165:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69263069 None:intergenic
GTGGTCCAGTAACTCAGATT+CGG 0.507220 7.2:+69262302 None:intergenic
TGCAGTCAGTAGCAGTGGCA+TGG 0.511284 7.2:-69262040 MS.gene79165:CDS
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69263060 None:intergenic
GCTATGGTTGTTTGCGAGGG+AGG 0.521590 7.2:+69263207 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69262012 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69263176 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+69263112 None:intergenic
GCAGTCAGTAGCAGTGGCAT+GGG 0.532869 7.2:-69262039 MS.gene79165:CDS
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-69262408 MS.gene79165:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69263086 MS.gene79165:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69262560 MS.gene79165:intron
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69262997 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69263003 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.547156 7.2:-69262204 MS.gene79165:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69262970 MS.gene79165:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69262974 MS.gene79165:CDS
CGTTGCTATGGTTGTTTGCG+AGG 0.559095 7.2:+69263203 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69262273 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69263249 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69262947 MS.gene79165:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69262273 MS.gene79165:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69262846 MS.gene79165:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69262986 MS.gene79165:CDS
GATCGGTCGATTTGGATTGG+AGG 0.573657 7.2:+69263035 None:intergenic
GTTGCTATGGTTGTTTGCGA+GGG 0.577691 7.2:+69263204 None:intergenic
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69263062 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+69262171 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69261916 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69262971 MS.gene79165:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69262990 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69263177 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69262211 MS.gene79165:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69262958 None:intergenic
GCAGAGAACAAAATTGGCGA+TGG 0.606690 7.2:+69263363 None:intergenic
AGAGAAAAGATGTTTGGCGA+TGG 0.611486 7.2:+69263171 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69263191 None:intergenic
TTGCGAGGGAGGATTCTGAT+CGG 0.616661 7.2:+69263218 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.618285 7.2:+69263018 None:intergenic
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69263341 MS.gene79165:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69263250 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69262936 MS.gene79165:CDS
CTTTATCAAGAGGAAGCTTG+TGG 0.630661 7.2:+69262283 None:intergenic
TCTGATGCAGTCAGTAGCAG+TGG 0.636122 7.2:-69262045 MS.gene79165:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69262650 MS.gene79165:intron
ACTGACTGCATCAGATGCGG+TGG 0.641619 7.2:+69262053 None:intergenic
CGAGGGAGGATTCTGATCGG+AGG 0.645667 7.2:+69263221 None:intergenic
GCTACTGACTGCATCAGATG+CGG 0.675085 7.2:+69262050 None:intergenic
TATGCTGAAGGAGCTAGGTG+TGG 0.709172 7.2:-69262199 MS.gene79165:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69262947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAATTTAACAAAATC+AGG + chr7.2:69262540-69262559 None:intergenic 10.0%
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69262601-69262620 MS.gene79165:intron 10.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69263077-69263096 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69262610-69262629 MS.gene79165:intron 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69262169-69262188 MS.gene79165:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:69262809-69262828 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69263075-69263094 MS.gene79165:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69263078-69263097 None:intergenic 25.0%
! CTCTAATCATAAACAAGAAA+GGG + chr7.2:69263332-69263351 None:intergenic 25.0%
! TCTCTAATCATAAACAAGAA+AGG + chr7.2:69263333-69263352 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69263219-69263238 MS.gene79165:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69262509-69262528 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69262508-69262527 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:69262808-69262827 MS.gene79165:intron 25.0%
!! TTCTTTAGAGAAAAGATGTT+TGG + chr7.2:69262150-69262169 None:intergenic 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69262774-69262793 MS.gene79165:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69263191-69263210 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69262886-69262905 MS.gene79165:CDS 25.0%
ACTGAAACAATCATCTTTGT+TGG - chr7.2:69263360-69263379 MS.gene79165:CDS 30.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69262032-69262051 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69262689-69262708 MS.gene79165:intron 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69262643-69262662 MS.gene79165:intron 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69262822-69262841 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69262642-69262661 MS.gene79165:intron 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69262690-69262709 MS.gene79165:intron 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:69262916-69262935 None:intergenic 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69262822-69262841 MS.gene79165:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69262010-69262029 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69262507-69262526 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69262042-69262061 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69263365-69263384 MS.gene79165:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69262648-69262667 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69263149-69263168 MS.gene79165:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69262408-69262427 None:intergenic 35.0%
GAAGAAGCAGAGAACAAAAT+TGG + chr7.2:69261958-69261977 None:intergenic 35.0%
TCCTTCCAAATGCAAAAGAT+GGG - chr7.2:69262959-69262978 MS.gene79165:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69262410-69262429 MS.gene79165:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69263101-69263120 MS.gene79165:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69262409-69262428 None:intergenic 35.0%
TTCCTTCCAAATGCAAAAGA+TGG - chr7.2:69262958-69262977 MS.gene79165:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69262017-69262036 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69262422-69262441 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69262254-69262273 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:69263151-69263170 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69262466-69262485 MS.gene79165:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69263049-69263068 MS.gene79165:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69262065-69262084 None:intergenic 40.0%
AGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69262144-69262163 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:69262203-69262222 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69262373-69262392 MS.gene79165:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69263032-69263051 MS.gene79165:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69263042-69263061 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69263039-69263058 MS.gene79165:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:69262912-69262931 None:intergenic 40.0%
CTTTATCAAGAGGAAGCTTG+TGG + chr7.2:69263032-69263051 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69262745-69262764 MS.gene79165:intron 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69262326-69262345 MS.gene79165:CDS 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69262372-69262391 MS.gene79165:CDS 40.0%
TCTGTCGACAACTTAACACT+CGG - chr7.2:69262713-69262732 MS.gene79165:intron 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69262333-69262352 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69262255-69262274 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:69263135-69263154 MS.gene79165:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69262253-69262272 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:69263132-69263151 MS.gene79165:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69262139-69262158 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69262138-69262157 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69262368-69262387 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69262365-69262384 MS.gene79165:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69262066-69262085 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69262055-69262074 None:intergenic 45.0%
GCAGAGAACAAAATTGGCGA+TGG + chr7.2:69261952-69261971 None:intergenic 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69263303-69263322 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:69263144-69263163 None:intergenic 45.0%
GTGGTCCAGTAACTCAGATT+CGG + chr7.2:69263013-69263032 None:intergenic 45.0%
GTTGCTATGGTTGTTTGCGA+GGG + chr7.2:69262111-69262130 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69263108-69263127 MS.gene79165:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69262662-69262681 MS.gene79165:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69262752-69262771 MS.gene79165:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69262904-69262923 MS.gene79165:CDS 45.0%
! GCCCATCTTTTGCATTTGGA+AGG + chr7.2:69262963-69262982 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69262325-69262344 None:intergenic 45.0%
!! GTTGAGTTGATCGGTCGATT+TGG + chr7.2:69262288-69262307 None:intergenic 45.0%
!! GTTGATCGGTCGATTTGGAT+TGG + chr7.2:69262283-69262302 None:intergenic 45.0%
AAGTTGTCGACAGACCCTAG+AGG + chr7.2:69262707-69262726 None:intergenic 50.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69263385-69263404 MS.gene79165:CDS 50.0%
CGTTGCTATGGTTGTTTGCG+AGG + chr7.2:69262112-69262131 None:intergenic 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69261971-69261990 MS.gene79165:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69262984-69263003 MS.gene79165:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69262988-69263007 None:intergenic 50.0%
GGCTTCCGAATCTGAGTTAC+TGG - chr7.2:69263005-69263024 MS.gene79165:CDS 50.0%
TATGCTGAAGGAGCTAGGTG+TGG - chr7.2:69263113-69263132 MS.gene79165:CDS 50.0%
TCTGATGCAGTCAGTAGCAG+TGG - chr7.2:69263267-69263286 MS.gene79165:CDS 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69262124-69262143 None:intergenic 50.0%
TTGCGAGGGAGGATTCTGAT+CGG + chr7.2:69262097-69262116 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69262376-69262395 MS.gene79165:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69262318-69262337 None:intergenic 50.0%
! GCTACTGACTGCATCAGATG+CGG + chr7.2:69263265-69263284 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69262967-69262986 None:intergenic 50.0%
!! GATCGGTCGATTTGGATTGG+AGG + chr7.2:69262280-69262299 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69262297-69262316 None:intergenic 50.0%
ACTGACTGCATCAGATGCGG+TGG + chr7.2:69263262-69263281 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69263384-69263403 MS.gene79165:CDS 55.0%
GCAGTCAGTAGCAGTGGCAT+GGG - chr7.2:69263273-69263292 MS.gene79165:CDS 55.0%
GCTATGGTTGTTTGCGAGGG+AGG + chr7.2:69262108-69262127 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:69262218-69262237 MS.gene79165:CDS 55.0%
TGCAGTCAGTAGCAGTGGCA+TGG - chr7.2:69263272-69263291 MS.gene79165:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69262246-69262265 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69262357-69262376 None:intergenic 60.0%
CGAGGGAGGATTCTGATCGG+AGG + chr7.2:69262094-69262113 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69262338-69262357 MS.gene79165:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69262312-69262331 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69263247-69263266 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69262227-69262246 MS.gene79165:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69262342-69262361 MS.gene79165:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69262341-69262360 MS.gene79165:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69262356-69262375 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69262226-69262245 MS.gene79165:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69261924 69263410 69261924 ID=MS.gene79165
chr7.2 mRNA 69261924 69263410 69261924 ID=MS.gene79165.t1;Parent=MS.gene79165
chr7.2 exon 69262847 69263410 69262847 ID=MS.gene79165.t1.exon1;Parent=MS.gene79165.t1
chr7.2 CDS 69262847 69263410 69262847 ID=cds.MS.gene79165.t1;Parent=MS.gene79165.t1
chr7.2 exon 69262651 69262702 69262651 ID=MS.gene79165.t1.exon2;Parent=MS.gene79165.t1
chr7.2 CDS 69262651 69262702 69262651 ID=cds.MS.gene79165.t1;Parent=MS.gene79165.t1
chr7.2 exon 69261924 69262567 69261924 ID=MS.gene79165.t1.exon3;Parent=MS.gene79165.t1
chr7.2 CDS 69261924 69262567 69261924 ID=cds.MS.gene79165.t1;Parent=MS.gene79165.t1
Gene Sequence

>MS.gene79165

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAATTTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTCCCTCGCAAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCTAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCGACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTTTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCTGTCGACAACTTAACACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTCCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGGACCACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGTGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCAGTAGCAGTGGCATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTAGAGAAGAATTGACTGAAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene79165.t1

MRFSRKTIAIANFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESSLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLDHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVSSSGMGFPTRLDFVADHPFLFMIREELTETIIFVGQVLNPLAG