AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79168

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79168.t1 MTR_3g101030 80.471 425 66 3 39 446 5 429 0.0 672
MS.gene79168.t1 MTR_3g101050 72.321 448 70 7 1 445 1 397 0.0 600
MS.gene79168.t1 MTR_3g101010 81.201 383 68 2 66 446 9 389 0.0 599
MS.gene79168.t1 MTR_8g027395 68.312 385 114 3 64 446 19 397 0.0 520
MS.gene79168.t1 MTR_3g018740 69.452 383 110 3 65 444 8 386 0.0 516
MS.gene79168.t1 MTR_4g045707 67.347 392 120 5 57 446 3 388 4.85e-179 505
MS.gene79168.t1 MTR_8g461160 66.071 392 129 3 57 444 1 392 1.11e-178 505
MS.gene79168.t1 MTR_8g027420 65.195 385 115 4 64 446 8 375 1.47e-172 488
MS.gene79168.t1 MTR_3g101180 64.322 398 130 4 57 444 3 398 2.25e-171 486
MS.gene79168.t1 MTR_3g048000 63.402 388 117 6 60 444 25 390 3.47e-167 476
MS.gene79168.t1 MTR_7g451890 59.305 403 158 3 48 446 2 402 3.41e-165 471
MS.gene79168.t1 MTR_4g088525 65.668 367 118 4 81 445 8 368 5.13e-165 469
MS.gene79168.t1 MTR_7g047780 59.801 403 156 3 48 446 2 402 5.16e-164 468
MS.gene79168.t1 MTR_7g050810 61.697 389 137 3 66 446 20 404 5.42e-164 468
MS.gene79168.t1 MTR_2g046030 63.377 385 128 5 66 444 9 386 1.51e-162 464
MS.gene79168.t1 MTR_4g088535 64.508 386 111 6 58 441 5 366 3.64e-162 462
MS.gene79168.t1 MTR_2g045980 63.377 385 128 5 66 444 9 386 5.29e-162 462
MS.gene79168.t1 MTR_7g050750 61.039 385 146 2 66 446 12 396 6.41e-161 460
MS.gene79168.t1 MTR_3g101130 60.733 382 147 2 66 446 10 389 2.54e-160 458
MS.gene79168.t1 MTR_3g015620 61.458 384 118 6 66 444 20 378 4.74e-151 434
MS.gene79168.t1 MTR_3g100995 76.078 255 60 1 192 446 11 264 3.88e-140 402
MS.gene79168.t1 MTR_3g102920 58.047 379 119 4 70 444 66 408 3.80e-136 397
MS.gene79168.t1 MTR_3g101200 55.556 369 139 4 78 444 45 390 1.41e-126 372
MS.gene79168.t1 MTR_3g101190 53.533 368 104 4 83 446 8 312 1.54e-122 359
MS.gene79168.t1 MTR_3g018747 68.077 260 65 3 188 444 9 253 6.89e-120 350
MS.gene79168.t1 MTR_3g100010 57.453 322 89 2 85 373 38 344 1.74e-113 337
MS.gene79168.t1 MTR_7g050830 54.369 309 110 2 68 356 22 319 4.93e-109 325
MS.gene79168.t1 MTR_3g015760 58.845 277 104 4 173 444 8 279 1.25e-99 299
MS.gene79168.t1 MTR_3g111160 68.571 210 61 2 240 446 13 220 2.12e-90 273
MS.gene79168.t1 MTR_3g100520 60.360 222 71 3 229 446 1 209 9.70e-86 261
MS.gene79168.t1 MTR_3g101110 60.251 239 63 4 188 420 68 280 1.16e-84 261
MS.gene79168.t1 MTR_3g114310 41.250 400 208 11 64 446 21 410 2.79e-83 262
MS.gene79168.t1 MTR_3g099970 66.154 195 49 2 188 381 20 198 8.68e-82 251
MS.gene79168.t1 MTR_2g046410 64.039 203 65 3 248 444 147 347 3.99e-79 249
MS.gene79168.t1 MTR_3g101020 68.108 185 34 2 262 446 1 160 1.41e-78 241
MS.gene79168.t1 MTR_3g111150 58.192 177 48 2 66 242 3 153 1.06e-60 195
MS.gene79168.t1 MTR_3g101150 63.057 157 52 2 294 444 1 157 1.51e-60 194
MS.gene79168.t1 MTR_3g102870 57.764 161 66 1 251 409 1 161 8.50e-56 183
MS.gene79168.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 3.00e-44 162
MS.gene79168.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 2.24e-24 97.1
MS.gene79168.t1 MTR_6g046890 63.636 77 25 1 79 155 14 87 7.80e-20 85.9
MS.gene79168.t1 MTR_3g101140 63.077 65 23 1 383 446 52 116 4.61e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79168.t1 AT1G47710 52.880 382 175 3 67 444 10 390 4.39e-142 412
MS.gene79168.t1 AT1G47710 51.493 402 186 4 47 444 21 417 1.42e-141 411
MS.gene79168.t1 AT3G45220 48.205 390 182 7 66 443 9 390 2.37e-119 354
MS.gene79168.t1 AT2G25240 47.396 384 186 7 66 443 9 382 1.59e-114 341
MS.gene79168.t1 AT2G26390 46.512 387 189 6 66 443 9 386 3.50e-112 335
MS.gene79168.t1 AT1G62170 42.818 369 180 5 85 445 88 433 5.20e-95 293
MS.gene79168.t1 AT2G14540 44.271 384 185 6 66 443 37 397 1.98e-93 288
MS.gene79168.t1 AT1G64030 42.448 384 194 7 66 443 9 371 4.42e-90 279
MS.gene79168.t1 AT2G35580 41.645 377 183 9 81 443 18 371 1.53e-88 274
MS.gene79168.t1 AT1G62170 39.303 402 180 6 85 445 88 466 3.85e-88 276
MS.gene79168.t1 AT1G64010 46.296 216 94 4 229 443 1 195 3.71e-59 192
MS.gene79168.t1 AT1G64010 46.269 201 86 4 244 443 2 181 4.33e-53 176
MS.gene79168.t1 AT1G62160 40.659 182 85 4 266 445 60 220 2.34e-35 130
MS.gene79168.t1 AT1G63280 50.435 115 53 2 188 300 8 120 5.93e-30 113
MS.gene79168.t1 AT1G51330 47.748 111 55 2 187 294 30 140 6.96e-22 93.2
MS.gene79168.t1 AT1G64020 32.432 111 72 3 70 179 13 121 3.02e-12 63.9

Find 100 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69205533 MS.gene79168:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69205634 MS.gene79168:CDS
TTGTCTTCGCCTTGCTTATA+AGG 0.248930 7.2:+69205365 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69206114 None:intergenic
GTTGAGTTGGTCGGTGGATT+TGG 0.272245 7.2:+69205991 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69205203 MS.gene79168:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69204894 MS.gene79168:CDS
GAAGAAGCAGAGAACAAATT+TGG 0.317759 7.2:+69206321 None:intergenic
ATCGATTGCGATATTGCTTA+TGG 0.318091 7.2:+69206237 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69205204 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-69205294 MS.gene79168:CDS
CAATGGAGGTCTTACTAAAA+TGG 0.331976 7.2:-69205129 MS.gene79168:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69205631 None:intergenic
TTTCTTCCAAATGCAAAAGA+TGG 0.344851 7.2:-69205320 MS.gene79168:CDS
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69205904 MS.gene79168:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69205229 MS.gene79168:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69205203 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69206129 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.389726 7.2:+69205034 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+69205472 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69204918 MS.gene79168:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69205871 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69205870 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69206107 MS.gene79168:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69205857 None:intergenic
GTTGGTCGGTGGATTTGGAT+TGG 0.428668 7.2:+69205996 None:intergenic
CCTACTTCCACTTTATCAAA+AGG 0.435106 7.2:+69205239 None:intergenic
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69205456 MS.gene79168:CDS
ATTAAAGAACTTCTTCCTCT+AGG 0.441074 7.2:-69205587 MS.gene79168:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69205459 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69204913 MS.gene79168:CDS
TCTCTAATCATAAACAAGAA+AGG 0.443816 7.2:+69204948 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69205059 MS.gene79168:CDS
GCATTCACTAGCAGTGGAAT+GGG 0.451094 7.2:-69205005 MS.gene79168:CDS
CTCTAATCATAAACAAGAAA+GGG 0.468439 7.2:+69204949 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69206049 MS.gene79168:CDS
TGCATTCACTAGCAGTGGAA+TGG 0.472960 7.2:-69205006 MS.gene79168:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.473973 7.2:-69205586 MS.gene79168:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69205866 MS.gene79168:CDS
ATGATTAGAGAAGAATTGAC+TGG 0.486911 7.2:-69204936 MS.gene79168:CDS
TTCTTCCAAATGCAAAAGAT+GGG 0.486946 7.2:-69205319 MS.gene79168:CDS
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+69206171 None:intergenic
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+69205293 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69205903 MS.gene79168:CDS
GTGTTGCAGTAACTCAGATT+CGG 0.491692 7.2:+69205268 None:intergenic
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69205923 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-69206058 MS.gene79168:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69206025 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69205633 MS.gene79168:CDS
ATATTGCTTATGGTTCTCTT+CGG 0.497512 7.2:+69206247 None:intergenic
CTTCGCCTTGCTTATAAGGA+AGG 0.497710 7.2:+69205369 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69204893 MS.gene79168:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69206033 None:intergenic
GGTCGGTGGATTTGGATTGG+AGG 0.510974 7.2:+69205999 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69206162 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69206024 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69204978 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69206140 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+69206076 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532609 7.2:-69205374 MS.gene79168:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69206050 MS.gene79168:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69205526 MS.gene79168:CDS
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69205961 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69205967 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+69206167 None:intergenic
TAGAGGCGAAGGAGTTGAGT+TGG 0.541556 7.2:+69205978 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:-69205170 MS.gene79168:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69205934 MS.gene79168:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69205938 MS.gene79168:CDS
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69206213 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69205911 MS.gene79168:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69205810 MS.gene79168:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69205950 MS.gene79168:CDS
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69206026 None:intergenic
GTAAGACCTCCATTGCTGAA+AGG 0.581658 7.2:+69205137 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69204882 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69205935 MS.gene79168:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69205954 None:intergenic
TCTATTGCATTCACTAGCAG+TGG 0.592901 7.2:-69205011 MS.gene79168:CDS
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69206141 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69205177 MS.gene79168:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69205922 None:intergenic
GCAGAGAACAAATTTGGCGA+TGG 0.609644 7.2:+69206327 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69206155 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-69205582 MS.gene79168:CDS
GGCGAAGGAGTTGAGTTGGT+CGG 0.615033 7.2:+69205982 None:intergenic
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69206305 MS.gene79168:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69206214 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69205900 MS.gene79168:CDS
GAAGGAGTTGAGTTGGTCGG+TGG 0.633538 7.2:+69205985 None:intergenic
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+69206182 None:intergenic
TGGGCTGAAAGAGAGACAAA+CGG 0.639283 7.2:-69205614 MS.gene79168:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69206135 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69205565 MS.gene79168:CDS
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+69206185 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:-69205165 MS.gene79168:CDS
AGTGAATGCAATAGATGCGG+TGG 0.701437 7.2:+69205019 None:intergenic
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69205911 None:intergenic
GCTAGTGAATGCAATAGATG+CGG 0.744397 7.2:+69205016 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69205572 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69205567-69205586 MS.gene79168:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69205506-69205525 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69206041-69206060 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69205576-69205595 MS.gene79168:CDS 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69205135-69205154 MS.gene79168:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:69205773-69205792 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69206039-69206058 MS.gene79168:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69206042-69206061 None:intergenic 25.0%
! CTCTAATCATAAACAAGAAA+GGG + chr7.2:69206296-69206315 None:intergenic 25.0%
! TCTCTAATCATAAACAAGAA+AGG + chr7.2:69206297-69206316 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69206183-69206202 MS.gene79168:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+TGG + chr7.2:69205475-69205494 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGT+GGG + chr7.2:69205474-69205493 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:69205772-69205791 MS.gene79168:intron 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69205738-69205757 MS.gene79168:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69206155-69206174 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69205850-69205869 MS.gene79168:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69204998-69205017 None:intergenic 30.0%
ATGATTAGAGAAGAATTGAC+TGG - chr7.2:69206306-69206325 MS.gene79168:CDS 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69205655-69205674 MS.gene79168:intron 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69205131-69205150 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69205609-69205628 MS.gene79168:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69205786-69205805 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69205608-69205627 MS.gene79168:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69205656-69205675 MS.gene79168:intron 30.0%
TTCTTCCAAATGCAAAAGAT+GGG - chr7.2:69205923-69205942 MS.gene79168:CDS 30.0%
TTTCTTCCAAATGCAAAAGA+TGG - chr7.2:69205922-69205941 MS.gene79168:CDS 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69205786-69205805 MS.gene79168:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69204976-69204995 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGTG+GGG + chr7.2:69205473-69205492 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69205116-69205135 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69206329-69206348 MS.gene79168:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69206324-69206343 MS.gene79168:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69205614-69205633 None:intergenic 35.0%
ATCGATTGCGATATTGCTTA+TGG + chr7.2:69205008-69205027 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69206113-69206132 MS.gene79168:CDS 35.0%
CCTACTTCCACTTTATCAAA+AGG + chr7.2:69206006-69206025 None:intergenic 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69205374-69205393 None:intergenic 35.0%
GAAGAAGCAGAGAACAAATT+TGG + chr7.2:69204924-69204943 None:intergenic 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69205376-69205395 MS.gene79168:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69206065-69206084 MS.gene79168:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69205375-69205394 None:intergenic 35.0%
! CAAGCTTCCTTTTGATAAAG+TGG - chr7.2:69205996-69206015 MS.gene79168:CDS 35.0%
! CCTTTTGATAAAGTGGAAGT+AGG - chr7.2:69206003-69206022 MS.gene79168:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69204983-69205002 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69205388-69205407 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69205220-69205239 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69205432-69205451 MS.gene79168:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69206013-69206032 MS.gene79168:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69205031-69205050 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:69205169-69205188 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69205339-69205358 MS.gene79168:CDS 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69205709-69205728 MS.gene79168:intron 40.0%
GCTAGTGAATGCAATAGATG+CGG + chr7.2:69206229-69206248 None:intergenic 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69205292-69205311 MS.gene79168:CDS 40.0%
GTGTTGCAGTAACTCAGATT+CGG + chr7.2:69205977-69205996 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69205338-69205357 MS.gene79168:CDS 40.0%
TCTATTGCATTCACTAGCAG+TGG - chr7.2:69206231-69206250 MS.gene79168:CDS 40.0%
TTGTCTTCGCCTTGCTTATA+AGG + chr7.2:69205880-69205899 None:intergenic 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69205299-69205318 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69205221-69205240 None:intergenic 40.0%
! GTTTTACCTTTCAGCAATGG+AGG - chr7.2:69206099-69206118 MS.gene79168:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69205219-69205238 None:intergenic 40.0%
!! GTGGTTTTACCTTTCAGCAA+TGG - chr7.2:69206096-69206115 MS.gene79168:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69205105-69205124 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69205104-69205123 None:intergenic 45.0%
AGTGAATGCAATAGATGCGG+TGG + chr7.2:69206226-69206245 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69205334-69205353 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69205331-69205350 MS.gene79168:CDS 45.0%
CTTCGCCTTGCTTATAAGGA+AGG + chr7.2:69205876-69205895 None:intergenic 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69205032-69205051 None:intergenic 45.0%
GCAGAGAACAAATTTGGCGA+TGG + chr7.2:69204918-69204937 None:intergenic 45.0%
GCATTCACTAGCAGTGGAAT+GGG - chr7.2:69206237-69206256 MS.gene79168:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69206267-69206286 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69205083-69205102 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69205110-69205129 None:intergenic 45.0%
GTAAGACCTCCATTGCTGAA+AGG + chr7.2:69206108-69206127 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69206072-69206091 MS.gene79168:CDS 45.0%
TGCATTCACTAGCAGTGGAA+TGG - chr7.2:69206236-69206255 MS.gene79168:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69205628-69205647 MS.gene79168:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69205716-69205735 MS.gene79168:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69205868-69205887 MS.gene79168:CDS 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69205291-69205310 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69205660-69205679 MS.gene79168:intron 45.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69206349-69206368 MS.gene79168:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69204937-69204956 MS.gene79168:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69205948-69205967 MS.gene79168:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69205952-69205971 None:intergenic 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69205677-69205696 MS.gene79168:intron 50.0%
TAGAGGCGAAGGAGTTGAGT+TGG + chr7.2:69205267-69205286 None:intergenic 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:69205063-69205082 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69205090-69205109 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69205342-69205361 MS.gene79168:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69205284-69205303 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69205931-69205950 None:intergenic 50.0%
! GTTGGTCGGTGGATTTGGAT+TGG + chr7.2:69205249-69205268 None:intergenic 50.0%
!! GTTGAGTTGGTCGGTGGATT+TGG + chr7.2:69205254-69205273 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69205673-69205692 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69206348-69206367 MS.gene79168:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:69205060-69205079 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69205078-69205097 None:intergenic 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:69205074-69205093 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:69205184-69205203 MS.gene79168:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG - chr7.2:69206077-69206096 MS.gene79168:CDS 55.0%
! GGTCGGTGGATTTGGATTGG+AGG + chr7.2:69205246-69205265 None:intergenic 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69205212-69205231 None:intergenic 55.0%
!! GAAGGAGTTGAGTTGGTCGG+TGG + chr7.2:69205260-69205279 None:intergenic 55.0%
!! GGCGAAGGAGTTGAGTTGGT+CGG + chr7.2:69205263-69205282 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69205323-69205342 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69205304-69205323 MS.gene79168:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69205278-69205297 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69206211-69206230 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69205193-69205212 MS.gene79168:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69205308-69205327 MS.gene79168:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69205307-69205326 MS.gene79168:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69205322-69205341 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69205192-69205211 MS.gene79168:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69204890 69206374 69204890 ID=MS.gene79168
chr7.2 mRNA 69204890 69206374 69204890 ID=MS.gene79168.t1;Parent=MS.gene79168
chr7.2 exon 69205811 69206374 69205811 ID=MS.gene79168.t1.exon1;Parent=MS.gene79168.t1
chr7.2 CDS 69205811 69206374 69205811 ID=cds.MS.gene79168.t1;Parent=MS.gene79168.t1
chr7.2 exon 69204890 69205666 69204890 ID=MS.gene79168.t1.exon2;Parent=MS.gene79168.t1
chr7.2 CDS 69204890 69205666 69204890 ID=cds.MS.gene79168.t1;Parent=MS.gene79168.t1
Gene Sequence

>MS.gene79168

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAATTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCGCAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGACCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCACTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCATATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTATTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGCGAAGACAAGCGTCAATTTACAATGTACTTTTTTCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGCAACACAAGCTTCCTTTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCAGCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTATTGCATTCACTAGCAGTGGAATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTAGAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene79168.t1

MRFSRKTIAIAKFVLCFFVLNIVACLIILDPKVIFPKRTISNIAIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGHIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTIEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLQHKLPFDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFSNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASIAFTSSGMGFPTRLDFVADHPFLFMIREELTGTIIFVGQVLNPLAG