AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79172

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79172.t1 MTR_3g101030 80.000 425 68 3 39 446 5 429 0.0 669
MS.gene79172.t1 MTR_3g101050 71.652 448 73 7 1 445 1 397 0.0 595
MS.gene79172.t1 MTR_3g101010 79.896 383 73 2 66 446 9 389 0.0 591
MS.gene79172.t1 MTR_3g018740 69.974 383 108 3 65 444 8 386 0.0 521
MS.gene79172.t1 MTR_8g027395 66.750 400 122 4 49 446 7 397 0.0 520
MS.gene79172.t1 MTR_4g045707 67.602 392 119 5 57 446 3 388 2.86e-180 509
MS.gene79172.t1 MTR_8g461160 65.816 392 130 3 57 444 1 392 1.25e-176 499
MS.gene79172.t1 MTR_8g027420 65.455 385 114 4 64 446 8 375 3.66e-173 490
MS.gene79172.t1 MTR_3g101180 64.573 398 129 4 57 444 3 398 5.26e-172 488
MS.gene79172.t1 MTR_3g048000 63.144 388 118 6 60 444 25 390 3.15e-167 476
MS.gene79172.t1 MTR_7g451890 59.553 403 157 3 48 446 2 402 2.43e-166 474
MS.gene79172.t1 MTR_4g088525 65.940 367 117 4 81 445 8 368 5.47e-166 471
MS.gene79172.t1 MTR_7g047780 60.050 403 155 3 48 446 2 402 3.23e-165 471
MS.gene79172.t1 MTR_7g050810 61.954 389 136 3 66 446 20 404 9.76e-165 470
MS.gene79172.t1 MTR_7g050750 61.299 385 145 2 66 446 12 396 3.33e-162 463
MS.gene79172.t1 MTR_4g088535 64.249 386 112 6 58 441 5 366 6.78e-162 462
MS.gene79172.t1 MTR_2g046030 63.117 385 129 5 66 444 9 386 6.87e-162 462
MS.gene79172.t1 MTR_2g045980 63.117 385 129 5 66 444 9 386 1.94e-161 461
MS.gene79172.t1 MTR_3g101130 60.209 382 149 2 66 446 10 389 1.23e-158 454
MS.gene79172.t1 MTR_3g015620 61.198 384 119 6 66 444 20 378 1.70e-150 433
MS.gene79172.t1 MTR_3g100995 74.510 255 64 1 192 446 11 264 7.73e-138 396
MS.gene79172.t1 MTR_3g102920 57.784 379 120 4 70 444 66 408 2.90e-136 397
MS.gene79172.t1 MTR_3g101200 55.556 369 139 4 78 444 45 390 9.34e-127 373
MS.gene79172.t1 MTR_3g101190 54.496 367 100 4 84 446 9 312 1.61e-124 364
MS.gene79172.t1 MTR_3g018747 68.077 260 65 3 188 444 9 253 8.57e-120 350
MS.gene79172.t1 MTR_3g100010 57.764 322 88 2 85 373 38 344 3.65e-115 341
MS.gene79172.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 1.59e-111 332
MS.gene79172.t1 MTR_3g015760 58.123 277 106 4 173 444 8 279 1.11e-98 297
MS.gene79172.t1 MTR_3g111160 67.619 210 63 2 240 446 13 220 6.57e-89 270
MS.gene79172.t1 MTR_3g100520 60.811 222 70 3 229 446 1 209 5.71e-86 262
MS.gene79172.t1 MTR_3g101110 59.833 239 64 4 188 420 68 280 3.48e-84 260
MS.gene79172.t1 MTR_3g114310 41.250 400 208 11 64 446 21 410 1.51e-83 263
MS.gene79172.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 1.66e-83 255
MS.gene79172.t1 MTR_2g046410 63.547 203 66 3 248 444 147 347 3.97e-78 246
MS.gene79172.t1 MTR_3g101020 65.405 185 39 2 262 446 1 160 3.65e-75 232
MS.gene79172.t1 MTR_3g111150 58.192 177 48 2 66 242 3 153 4.13e-61 196
MS.gene79172.t1 MTR_3g101150 62.420 157 53 2 294 444 1 157 2.06e-59 192
MS.gene79172.t1 MTR_3g102870 57.143 161 67 1 251 409 1 161 1.27e-56 185
MS.gene79172.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 2.17e-44 162
MS.gene79172.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 2.00e-24 97.1
MS.gene79172.t1 MTR_6g046890 69.697 66 20 0 80 145 15 80 1.30e-19 85.1
MS.gene79172.t1 MTR_3g101140 61.538 65 24 1 383 446 52 116 8.67e-17 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79172.t1 AT1G47710 52.880 382 175 3 67 444 10 390 1.86e-143 415
MS.gene79172.t1 AT1G47710 51.358 405 188 4 44 444 18 417 2.04e-143 416
MS.gene79172.t1 AT3G45220 47.436 390 185 7 66 443 9 390 2.92e-118 351
MS.gene79172.t1 AT2G25240 47.396 384 186 7 66 443 9 382 1.26e-115 344
MS.gene79172.t1 AT2G26390 47.028 387 187 6 66 443 9 386 3.97e-114 340
MS.gene79172.t1 AT1G62170 42.547 369 181 5 85 445 88 433 4.28e-95 293
MS.gene79172.t1 AT2G14540 44.010 384 186 6 66 443 37 397 2.59e-93 288
MS.gene79172.t1 AT1G64030 42.708 384 193 7 66 443 9 371 4.28e-92 284
MS.gene79172.t1 AT2G35580 42.175 377 181 9 81 443 18 371 1.56e-90 280
MS.gene79172.t1 AT1G62170 39.055 402 181 6 85 445 88 466 3.98e-88 276
MS.gene79172.t1 AT1G64010 45.370 216 96 4 229 443 1 195 1.19e-58 191
MS.gene79172.t1 AT1G64010 45.274 201 88 4 244 443 2 181 1.37e-52 175
MS.gene79172.t1 AT1G62160 38.624 189 90 5 262 445 53 220 4.00e-33 125
MS.gene79172.t1 AT1G63280 51.304 115 52 2 188 300 8 120 1.29e-31 117
MS.gene79172.t1 AT1G51330 49.550 111 53 2 187 294 30 140 1.44e-23 98.2
MS.gene79172.t1 AT1G64020 33.333 111 71 3 70 179 13 121 7.54e-13 65.5

Find 103 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69132174 MS.gene79172:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69132275 MS.gene79172:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+69132006 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69132755 None:intergenic
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69132878 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69131844 MS.gene79172:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69132632 None:intergenic
CAGGTGCTCAATCCACTTGC+TGG 0.322335 7.2:-69131535 MS.gene79172:CDS
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69131845 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.331976 7.2:-69131770 MS.gene79172:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69132272 None:intergenic
TTTCTTCCAAATGCAAAAGA+TGG 0.344851 7.2:-69131961 MS.gene79172:CDS
GAAGAAGCAGAGAACAAAAT+TGG 0.347022 7.2:+69132962 None:intergenic
GGCTACCGAATCTGAGTTAC+TGG 0.351430 7.2:-69131914 MS.gene79172:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69131870 MS.gene79172:CDS
GCCAACTTTGCTTGAGAAGC+TGG 0.369446 7.2:-69131935 MS.gene79172:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69131844 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69132770 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.389726 7.2:+69131675 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+69132113 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69131559 MS.gene79172:CDS
TATCTTTCGTCAATGGTGTA+TGG 0.398022 7.2:-69132545 MS.gene79172:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69132512 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69132511 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69132748 MS.gene79172:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69132498 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69132228 MS.gene79172:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69132097 MS.gene79172:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69132100 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69131554 MS.gene79172:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69132227 MS.gene79172:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-69131887 MS.gene79172:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69132865 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69131700 MS.gene79172:CDS
GCATTCACTAGCAGTGGAAT+GGG 0.451094 7.2:-69131646 MS.gene79172:CDS
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:+69131589 None:intergenic
ATCATCGCTGCTGGCTCTGA+GGG 0.455670 7.2:-69132690 MS.gene79172:CDS
TGCATTCACTAGCAGTGGAA+TGG 0.472960 7.2:-69131647 MS.gene79172:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69132507 MS.gene79172:CDS
CCTCATCTATCTTTCGTCAA+TGG 0.476041 7.2:-69132552 MS.gene79172:CDS
TTCTTCCAAATGCAAAAGAT+GGG 0.486946 7.2:-69131960 MS.gene79172:CDS
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+69132812 None:intergenic
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69132564 None:intergenic
TCATGACTAGTGAGAAGAAT+CGG 0.494354 7.2:-69132068 MS.gene79172:CDS
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-69132699 MS.gene79172:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69132666 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69132274 MS.gene79172:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69132637 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+69132010 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69132888 None:intergenic
GTGTTCCAGTAACTCAGATT+CGG 0.500783 7.2:+69131909 None:intergenic
GCCAGCTTCTCAAGCAAAGT+TGG 0.503025 7.2:+69131934 None:intergenic
ATCTTTCGTCAATGGTGTAT+GGG 0.513261 7.2:-69132544 MS.gene79172:CDS
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:-69131577 MS.gene79172:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:+69131590 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69132803 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69132665 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69131619 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69132781 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+69132717 None:intergenic
CATCATCGCTGCTGGCTCTG+AGG 0.528826 7.2:-69132691 MS.gene79172:CDS
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-69132015 MS.gene79172:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69132167 MS.gene79172:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69132640 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69132602 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69132608 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+69132808 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:-69131811 MS.gene79172:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69132575 MS.gene79172:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69132579 MS.gene79172:CDS
CACTAAAATCACCCAGCAAG+TGG 0.552425 7.2:+69131523 None:intergenic
AGGTGCTCAATCCACTTGCT+GGG 0.552433 7.2:-69131534 MS.gene79172:CDS
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69131880 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69132854 None:intergenic
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69131880 MS.gene79172:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69132451 MS.gene79172:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69132591 MS.gene79172:CDS
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69132667 None:intergenic
GTAAGACCTCCATTGCTGAA+AGG 0.581658 7.2:+69131778 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69132576 MS.gene79172:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69132595 None:intergenic
TCTATTGCATTCACTAGCAG+TGG 0.592901 7.2:-69131652 MS.gene79172:CDS
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69132782 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69132623 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69131818 MS.gene79172:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69132563 None:intergenic
GCAGAGAACAAAATTGGCGA+TGG 0.606690 7.2:+69132968 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69132796 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-69132223 MS.gene79172:CDS
TTTCGTCAATGGTGTATGGG+TGG 0.617958 7.2:-69132541 MS.gene79172:CDS
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69132946 MS.gene79172:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69132855 None:intergenic
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+69132823 None:intergenic
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69132255 MS.gene79172:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69132776 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69132206 MS.gene79172:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69132626 None:intergenic
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+69132826 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:-69131806 MS.gene79172:CDS
AGTGAATGCAATAGATGCGG+TGG 0.701437 7.2:+69131660 None:intergenic
GCTAGTGAATGCAATAGATG+CGG 0.744397 7.2:+69131657 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69132213 None:intergenic
CCATTGACGAAAGATAGATG+AGG 0.773193 7.2:+69132552 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69132208-69132227 MS.gene79172:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69132147-69132166 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69132682-69132701 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG + chr7.2:69132937-69132956 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG + chr7.2:69132938-69132957 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69132217-69132236 MS.gene79172:CDS 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69131776-69131795 MS.gene79172:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG - chr7.2:69132947-69132966 MS.gene79172:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:69132414-69132433 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69132680-69132699 MS.gene79172:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69132683-69132702 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69132824-69132843 MS.gene79172:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+TGG + chr7.2:69132116-69132135 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGT+GGG + chr7.2:69132115-69132134 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:69132413-69132432 MS.gene79172:intron 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69132379-69132398 MS.gene79172:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69132796-69132815 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69132491-69132510 MS.gene79172:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69131639-69131658 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69132296-69132315 MS.gene79172:intron 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69131772-69131791 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69132250-69132269 MS.gene79172:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69132427-69132446 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69132249-69132268 MS.gene79172:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69132297-69132316 MS.gene79172:intron 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:69132521-69132540 None:intergenic 30.0%
TTCTTCCAAATGCAAAAGAT+GGG - chr7.2:69132564-69132583 MS.gene79172:CDS 30.0%
TTTCTTCCAAATGCAAAAGA+TGG - chr7.2:69132563-69132582 MS.gene79172:CDS 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69132427-69132446 MS.gene79172:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69131617-69131636 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGTG+GGG + chr7.2:69132114-69132133 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69131757-69131776 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69131649-69131668 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69132970-69132989 MS.gene79172:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69132965-69132984 MS.gene79172:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69132255-69132274 None:intergenic 35.0%
ATCTTTCGTCAATGGTGTAT+GGG - chr7.2:69131980-69131999 MS.gene79172:CDS 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69132754-69132773 MS.gene79172:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69132015-69132034 None:intergenic 35.0%
GAAGAAGCAGAGAACAAAAT+TGG + chr7.2:69131565-69131584 None:intergenic 35.0%
TATCTTTCGTCAATGGTGTA+TGG - chr7.2:69131979-69131998 MS.gene79172:CDS 35.0%
TCATGACTAGTGAGAAGAAT+CGG - chr7.2:69132456-69132475 MS.gene79172:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69132017-69132036 MS.gene79172:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69132706-69132725 MS.gene79172:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69132016-69132035 None:intergenic 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69131624-69131643 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69132029-69132048 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69131861-69131880 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69132073-69132092 MS.gene79172:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69132654-69132673 MS.gene79172:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69131672-69131691 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:69131810-69131829 None:intergenic 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69132637-69132656 MS.gene79172:CDS 40.0%
CCATTGACGAAAGATAGATG+AGG + chr7.2:69131975-69131994 None:intergenic 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69132647-69132666 None:intergenic 40.0%
CCTCATCTATCTTTCGTCAA+TGG - chr7.2:69131972-69131991 MS.gene79172:CDS 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69132644-69132663 MS.gene79172:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:69132517-69132536 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69132350-69132369 MS.gene79172:intron 40.0%
GCTAGTGAATGCAATAGATG+CGG + chr7.2:69132870-69132889 None:intergenic 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69131933-69131952 MS.gene79172:CDS 40.0%
GTGTTCCAGTAACTCAGATT+CGG + chr7.2:69132618-69132637 None:intergenic 40.0%
TCTATTGCATTCACTAGCAG+TGG - chr7.2:69132872-69132891 MS.gene79172:CDS 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69131940-69131959 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69131862-69131881 None:intergenic 40.0%
! GTTTTACCTTTCAGCAATGG+AGG - chr7.2:69132740-69132759 MS.gene79172:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69131860-69131879 None:intergenic 40.0%
!! GTGGTTTTACCTTTCAGCAA+TGG - chr7.2:69132737-69132756 MS.gene79172:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69131746-69131765 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69131745-69131764 None:intergenic 45.0%
AGTGAATGCAATAGATGCGG+TGG + chr7.2:69132867-69132886 None:intergenic 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69131673-69131692 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69131662-69131681 None:intergenic 45.0%
GCAGAGAACAAAATTGGCGA+TGG + chr7.2:69131559-69131578 None:intergenic 45.0%
GCATTCACTAGCAGTGGAAT+GGG - chr7.2:69132878-69132897 MS.gene79172:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69132908-69132927 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69131724-69131743 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69131751-69131770 None:intergenic 45.0%
GTAAGACCTCCATTGCTGAA+AGG + chr7.2:69132749-69132768 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69132713-69132732 MS.gene79172:CDS 45.0%
TGCATTCACTAGCAGTGGAA+TGG - chr7.2:69132877-69132896 MS.gene79172:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69132269-69132288 MS.gene79172:CDS 45.0%
TTTCGTCAATGGTGTATGGG+TGG - chr7.2:69131983-69132002 MS.gene79172:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69132357-69132376 MS.gene79172:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69132509-69132528 MS.gene79172:CDS 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69131890-69131909 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69131932-69131951 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69132301-69132320 MS.gene79172:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69131895-69131914 None:intergenic 45.0%
AGGTGCTCAATCCACTTGCT+GGG - chr7.2:69132990-69133009 MS.gene79172:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69131578-69131597 MS.gene79172:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69132589-69132608 MS.gene79172:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69132593-69132612 None:intergenic 50.0%
GGCTACCGAATCTGAGTTAC+TGG - chr7.2:69132610-69132629 MS.gene79172:CDS 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69132318-69132337 MS.gene79172:intron 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:69131704-69131723 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69131731-69131750 None:intergenic 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69131925-69131944 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69131887-69131906 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69132572-69132591 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69131901-69131920 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69131904-69131923 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69132314-69132333 None:intergenic 55.0%
CAGGTGCTCAATCCACTTGC+TGG - chr7.2:69132989-69133008 MS.gene79172:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:69131701-69131720 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69131719-69131738 None:intergenic 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:69131715-69131734 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:69131825-69131844 MS.gene79172:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG - chr7.2:69132718-69132737 MS.gene79172:CDS 55.0%
!! ATCATCGCTGCTGGCTCTGA+GGG - chr7.2:69131834-69131853 MS.gene79172:CDS 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69131964-69131983 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69131945-69131964 MS.gene79172:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69131919-69131938 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69132852-69132871 None:intergenic 60.0%
!! CATCATCGCTGCTGGCTCTG+AGG - chr7.2:69131833-69131852 MS.gene79172:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69131949-69131968 MS.gene79172:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69131948-69131967 MS.gene79172:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69131963-69131982 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69131531 69133015 69131531 ID=MS.gene79172
chr7.2 mRNA 69131531 69133015 69131531 ID=MS.gene79172.t1;Parent=MS.gene79172
chr7.2 exon 69132452 69133015 69132452 ID=MS.gene79172.t1.exon1;Parent=MS.gene79172.t1
chr7.2 CDS 69132452 69133015 69132452 ID=cds.MS.gene79172.t1;Parent=MS.gene79172.t1
chr7.2 exon 69131531 69132307 69131531 ID=MS.gene79172.t1.exon2;Parent=MS.gene79172.t1
chr7.2 CDS 69131531 69132307 69131531 ID=cds.MS.gene79172.t1;Parent=MS.gene79172.t1
Gene Sequence

>MS.gene79172

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAATTTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCTGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCAATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCACTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAATCGGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTTCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTACCGAATCTGAGTTACTGGAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCAGCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTATTGCATTCACTAGCAGTGGAATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCACTTGCTGGGTGA
Protein sequence

>MS.gene79172.t1

MRFSRKTIAIANFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVNGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKNRFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLATESELLEHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFSNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASIAFTSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG