AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79173

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79173.t1 MTR_3g101030 80.235 425 67 3 39 446 5 429 0.0 669
MS.gene79173.t1 MTR_3g101050 72.321 448 70 7 1 445 1 397 0.0 597
MS.gene79173.t1 MTR_3g101010 80.418 383 71 2 66 446 9 389 0.0 593
MS.gene79173.t1 MTR_3g018740 69.974 383 108 3 65 444 8 386 0.0 520
MS.gene79173.t1 MTR_8g027395 67.792 385 116 3 64 446 19 397 0.0 514
MS.gene79173.t1 MTR_4g045707 67.092 392 121 5 57 446 3 388 1.01e-178 504
MS.gene79173.t1 MTR_8g461160 65.816 392 130 2 57 444 1 392 4.11e-178 503
MS.gene79173.t1 MTR_8g027420 64.935 385 116 4 64 446 8 375 2.35e-171 486
MS.gene79173.t1 MTR_3g101180 64.070 398 131 4 57 444 3 398 7.73e-171 485
MS.gene79173.t1 MTR_7g451890 59.801 403 156 3 48 446 2 402 6.56e-166 473
MS.gene79173.t1 MTR_3g048000 62.629 388 120 5 60 444 25 390 3.26e-165 471
MS.gene79173.t1 MTR_7g050810 61.697 389 137 3 66 446 20 404 2.14e-164 469
MS.gene79173.t1 MTR_7g047780 59.801 403 156 3 48 446 2 402 3.06e-163 466
MS.gene79173.t1 MTR_4g088525 64.850 367 121 3 81 445 8 368 5.32e-163 464
MS.gene79173.t1 MTR_2g046030 63.636 385 127 5 66 444 9 386 8.83e-163 464
MS.gene79173.t1 MTR_2g045980 63.636 385 127 5 66 444 9 386 3.61e-162 462
MS.gene79173.t1 MTR_4g088535 64.249 386 112 6 58 441 5 366 7.23e-162 462
MS.gene79173.t1 MTR_7g050750 60.779 385 147 2 66 446 12 396 1.04e-160 459
MS.gene79173.t1 MTR_3g101130 60.209 382 149 2 66 446 10 389 2.62e-159 456
MS.gene79173.t1 MTR_3g015620 60.938 384 120 6 66 444 20 378 2.74e-149 430
MS.gene79173.t1 MTR_3g100995 74.902 255 63 1 192 446 11 264 1.85e-137 395
MS.gene79173.t1 MTR_3g102920 57.895 380 118 6 70 444 66 408 7.50e-135 394
MS.gene79173.t1 MTR_3g101200 55.014 369 141 4 78 444 45 390 3.30e-125 369
MS.gene79173.t1 MTR_3g101190 53.804 368 103 4 83 446 8 312 3.78e-123 360
MS.gene79173.t1 MTR_3g018747 68.462 260 64 3 188 444 9 253 4.13e-120 350
MS.gene79173.t1 MTR_3g100010 57.764 322 88 2 85 373 38 344 1.58e-114 340
MS.gene79173.t1 MTR_7g050830 54.693 309 109 2 68 356 22 319 2.07e-110 328
MS.gene79173.t1 MTR_3g015760 58.123 277 106 4 173 444 8 279 5.34e-98 295
MS.gene79173.t1 MTR_3g111160 68.095 210 62 2 240 446 13 220 2.73e-89 271
MS.gene79173.t1 MTR_3g101110 59.833 239 64 4 188 420 68 280 7.50e-85 262
MS.gene79173.t1 MTR_3g100520 59.910 222 72 3 229 446 1 209 7.75e-85 259
MS.gene79173.t1 MTR_3g114310 42.105 399 204 12 65 446 22 410 1.56e-83 263
MS.gene79173.t1 MTR_3g099970 66.154 195 49 2 188 381 20 198 1.16e-82 253
MS.gene79173.t1 MTR_2g046410 64.532 203 64 3 248 444 147 347 2.65e-79 249
MS.gene79173.t1 MTR_3g101020 66.486 185 37 2 262 446 1 160 5.45e-76 234
MS.gene79173.t1 MTR_3g111150 58.192 177 48 2 66 242 3 153 8.38e-61 196
MS.gene79173.t1 MTR_3g101150 61.783 157 54 2 294 444 1 157 9.20e-59 190
MS.gene79173.t1 MTR_3g102870 57.143 161 67 1 251 409 1 161 3.36e-56 184
MS.gene79173.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 2.91e-44 162
MS.gene79173.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 2.13e-24 97.1
MS.gene79173.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 7.57e-20 85.9
MS.gene79173.t1 MTR_3g101140 63.077 65 23 1 383 446 52 116 1.53e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79173.t1 AT1G47710 52.618 382 176 3 67 444 10 390 6.26e-141 409
MS.gene79173.t1 AT1G47710 51.111 405 189 4 44 444 18 417 6.83e-141 410
MS.gene79173.t1 AT3G45220 47.558 389 186 6 66 443 9 390 6.44e-118 350
MS.gene79173.t1 AT2G25240 47.396 384 186 7 66 443 9 382 1.15e-113 339
MS.gene79173.t1 AT2G26390 46.512 387 189 6 66 443 9 386 7.98e-112 335
MS.gene79173.t1 AT1G62170 42.234 367 185 4 85 445 88 433 8.85e-94 290
MS.gene79173.t1 AT2G14540 44.010 384 186 6 66 443 37 397 1.47e-92 286
MS.gene79173.t1 AT1G64030 42.708 384 193 7 66 443 9 371 2.09e-91 282
MS.gene79173.t1 AT2G35580 41.823 373 188 8 81 443 18 371 1.05e-88 275
MS.gene79173.t1 AT1G62170 38.750 400 185 5 85 445 88 466 6.90e-87 273
MS.gene79173.t1 AT1G64010 46.759 216 93 4 229 443 1 195 9.74e-60 194
MS.gene79173.t1 AT1G64010 46.766 201 85 4 244 443 2 181 1.13e-53 178
MS.gene79173.t1 AT1G62160 39.683 189 88 5 262 445 53 220 5.06e-34 127
MS.gene79173.t1 AT1G63280 51.304 115 52 2 188 300 8 120 4.56e-31 116
MS.gene79173.t1 AT1G51330 48.649 111 54 2 187 294 30 140 2.00e-22 94.7
MS.gene79173.t1 AT1G64020 32.432 111 72 3 70 179 13 121 2.94e-12 63.9

Find 102 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-68938842 MS.gene79173:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-68938943 MS.gene79173:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+68938674 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+68939423 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-68938438 MS.gene79173:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+68939546 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-68938512 MS.gene79173:CDS
GAAGAAGCAGAGAACAAATT+TGG 0.317759 7.2:+68939630 None:intergenic
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+68939300 None:intergenic
CAGGTGCTCAATCCACTTGC+TGG 0.322335 7.2:-68938203 MS.gene79173:CDS
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+68938513 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-68938603 MS.gene79173:CDS
GTCTCCGTCATTCTACAAAA+TGG 0.342130 7.2:-68939259 MS.gene79173:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+68938940 None:intergenic
TTTCTTCCAAATGCAAAAGA+TGG 0.344851 7.2:-68938629 MS.gene79173:CDS
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-68939213 MS.gene79173:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-68938538 MS.gene79173:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+68938512 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+68939438 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+68938343 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+68938781 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-68938227 MS.gene79173:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+68939180 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+68939179 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-68939416 MS.gene79173:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+68939166 None:intergenic
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-68938765 MS.gene79173:CDS
ATTAAAGAACTTCTTCCTCT+AGG 0.441074 7.2:-68938896 MS.gene79173:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+68938768 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-68938222 MS.gene79173:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-68938555 MS.gene79173:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+68939533 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-68938368 MS.gene79173:CDS
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:+68938257 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-68939358 MS.gene79173:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.473973 7.2:-68938895 MS.gene79173:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-68939175 MS.gene79173:CDS
TTCTTCCAAATGCAAAAGAT+GGG 0.486946 7.2:-68938628 MS.gene79173:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+68938602 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-68939212 MS.gene79173:CDS
GTGTTGCAGTAACTCAGATT+CGG 0.491692 7.2:+68938577 None:intergenic
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+68939232 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-68939367 MS.gene79173:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+68939334 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-68938942 MS.gene79173:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+68939305 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+68938678 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+68939556 None:intergenic
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+68939342 None:intergenic
TGCAGTCAGTAGCAGTGGCA+TGG 0.511284 7.2:-68938315 MS.gene79173:CDS
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:-68938245 MS.gene79173:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:+68938258 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+68939333 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+68938287 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+68939449 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+68939385 None:intergenic
AAAATGGTGCTCCCGCAGGC+GGG 0.525926 7.2:-68939243 MS.gene79173:CDS
GGAAACGTTGCTATGGTTGT+TGG 0.529045 7.2:+68939471 None:intergenic
GCAGTCAGTAGCAGTGGCAT+GGG 0.532869 7.2:-68938314 MS.gene79173:CDS
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-68938683 MS.gene79173:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-68939359 MS.gene79173:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-68938835 MS.gene79173:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+68939308 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+68939270 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+68939276 None:intergenic
GCTATGGTTGTTGGTGAGGA+AGG 0.545155 7.2:+68939480 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.547156 7.2:-68938479 MS.gene79173:CDS
CACTAAAATCACCCAGCAAG+TGG 0.552425 7.2:+68938191 None:intergenic
AGGTGCTCAATCCACTTGCT+GGG 0.552433 7.2:-68938202 MS.gene79173:CDS
CTACAAAATGGTGCTCCCGC+AGG 0.558174 7.2:-68939247 MS.gene79173:CDS
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+68938548 None:intergenic
CAAAATGGTGCTCCCGCAGG+CGG 0.565607 7.2:-68939244 MS.gene79173:CDS
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+68939522 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-68939220 MS.gene79173:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-68938548 MS.gene79173:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-68939119 MS.gene79173:intron
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+68939335 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+68938446 None:intergenic
CGTTGCTATGGTTGTTGGTG+AGG 0.587940 7.2:+68939476 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+68939450 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+68939291 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-68938486 MS.gene79173:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+68939231 None:intergenic
GCAGAGAACAAATTTGGCGA+TGG 0.609644 7.2:+68939636 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+68939464 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-68938891 MS.gene79173:CDS
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-68939614 MS.gene79173:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+68939523 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-68939209 MS.gene79173:CDS
TGGTGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+68939491 None:intergenic
TCTGATGCAGTCAGTAGCAG+TGG 0.636122 7.2:-68938320 MS.gene79173:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.639283 7.2:-68938923 MS.gene79173:CDS
TTTGTAGAATGACGGAGACG+AGG 0.640930 7.2:+68939263 None:intergenic
ACTGACTGCATCAGATGCGG+TGG 0.641619 7.2:+68938328 None:intergenic
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+68939444 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-68938874 MS.gene79173:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+68939294 None:intergenic
GCTACTGACTGCATCAGATG+CGG 0.675085 7.2:+68938325 None:intergenic
TGAGGAAGGATTCTGATCGG+AGG 0.692769 7.2:+68939494 None:intergenic
TATGCTGAAGGAGCTAGGTG+TGG 0.709172 7.2:-68938474 MS.gene79173:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+68939220 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+68938881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:68938876-68938895 MS.gene79173:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:68938815-68938834 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:68939350-68939369 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG + chr7.2:68939605-68939624 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG + chr7.2:68939606-68939625 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:68938885-68938904 MS.gene79173:CDS 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:68938444-68938463 MS.gene79173:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG - chr7.2:68939615-68939634 MS.gene79173:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:68939082-68939101 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:68939348-68939367 MS.gene79173:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:68939351-68939370 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:68939492-68939511 MS.gene79173:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+TGG + chr7.2:68938784-68938803 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGT+GGG + chr7.2:68938783-68938802 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:68939081-68939100 MS.gene79173:intron 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:68939047-68939066 MS.gene79173:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:68939464-68939483 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:68939159-68939178 MS.gene79173:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:68938307-68938326 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:68938964-68938983 MS.gene79173:intron 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:68938440-68938459 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:68938918-68938937 MS.gene79173:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:68939095-68939114 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:68938917-68938936 MS.gene79173:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:68938965-68938984 MS.gene79173:intron 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:68939189-68939208 None:intergenic 30.0%
TTCTTCCAAATGCAAAAGAT+GGG - chr7.2:68939232-68939251 MS.gene79173:CDS 30.0%
TTTCTTCCAAATGCAAAAGA+TGG - chr7.2:68939231-68939250 MS.gene79173:CDS 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:68939095-68939114 MS.gene79173:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:68938285-68938304 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGTG+GGG + chr7.2:68938782-68938801 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:68938425-68938444 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:68938317-68938336 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:68939638-68939657 MS.gene79173:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:68939633-68939652 MS.gene79173:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:68938923-68938942 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:68939422-68939441 MS.gene79173:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:68938683-68938702 None:intergenic 35.0%
GAAGAAGCAGAGAACAAATT+TGG + chr7.2:68938233-68938252 None:intergenic 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:68938685-68938704 MS.gene79173:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:68939374-68939393 MS.gene79173:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:68938684-68938703 None:intergenic 35.0%
! AGCACCATTTTGTAGAATGA+CGG + chr7.2:68938608-68938627 None:intergenic 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:68938292-68938311 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:68938697-68938716 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:68938529-68938548 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:68939424-68939443 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:68938741-68938760 MS.gene79173:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:68939322-68939341 MS.gene79173:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:68938340-68938359 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:68938478-68938497 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:68938648-68938667 MS.gene79173:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:68939305-68939324 MS.gene79173:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:68939315-68939334 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:68939312-68939331 MS.gene79173:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:68939185-68939204 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:68939018-68939037 MS.gene79173:intron 40.0%
GTCTCCGTCATTCTACAAAA+TGG - chr7.2:68938601-68938620 MS.gene79173:CDS 40.0%
GTGTTGCAGTAACTCAGATT+CGG + chr7.2:68939286-68939305 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:68938647-68938666 MS.gene79173:CDS 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:68938530-68938549 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:68939408-68939427 MS.gene79173:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:68938528-68938547 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:68939405-68939424 MS.gene79173:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:68938414-68938433 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:68938413-68938432 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:68938643-68938662 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:68938640-68938659 MS.gene79173:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:68938341-68938360 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:68938330-68938349 None:intergenic 45.0%
GCAGAGAACAAATTTGGCGA+TGG + chr7.2:68938227-68938246 None:intergenic 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:68939576-68939595 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:68938392-68938411 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:68938419-68938438 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:68939417-68939436 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:68939381-68939400 MS.gene79173:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:68938937-68938956 MS.gene79173:CDS 45.0%
TGGTGAGGAAGGATTCTGAT+CGG + chr7.2:68938372-68938391 None:intergenic 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:68939025-68939044 MS.gene79173:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:68939177-68939196 MS.gene79173:CDS 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:68938558-68938577 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:68938600-68938619 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:68938969-68938988 MS.gene79173:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:68938563-68938582 None:intergenic 45.0%
AGGTGCTCAATCCACTTGCT+GGG - chr7.2:68939658-68939677 MS.gene79173:CDS 50.0%
CGTTGCTATGGTTGTTGGTG+AGG + chr7.2:68938387-68938406 None:intergenic 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:68938246-68938265 MS.gene79173:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:68939257-68939276 MS.gene79173:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:68939261-68939280 None:intergenic 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:68938986-68939005 MS.gene79173:intron 50.0%
TATGCTGAAGGAGCTAGGTG+TGG - chr7.2:68939386-68939405 MS.gene79173:CDS 50.0%
TCTGATGCAGTCAGTAGCAG+TGG - chr7.2:68939540-68939559 MS.gene79173:CDS 50.0%
TGAGGAAGGATTCTGATCGG+AGG + chr7.2:68938369-68938388 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:68938399-68938418 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:68938651-68938670 MS.gene79173:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:68938593-68938612 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:68938555-68938574 None:intergenic 50.0%
! GCTACTGACTGCATCAGATG+CGG + chr7.2:68939538-68939557 None:intergenic 50.0%
! GCTATGGTTGTTGGTGAGGA+AGG + chr7.2:68938383-68938402 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:68939240-68939259 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:68938569-68938588 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:68938572-68938591 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:68938982-68939001 None:intergenic 55.0%
ACTGACTGCATCAGATGCGG+TGG + chr7.2:68939535-68939554 None:intergenic 55.0%
CAGGTGCTCAATCCACTTGC+TGG - chr7.2:68939657-68939676 MS.gene79173:CDS 55.0%
CTACAAAATGGTGCTCCCGC+AGG - chr7.2:68938613-68938632 MS.gene79173:CDS 55.0%
GCAGTCAGTAGCAGTGGCAT+GGG - chr7.2:68939546-68939565 MS.gene79173:CDS 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:68938493-68938512 MS.gene79173:CDS 55.0%
TGCAGTCAGTAGCAGTGGCA+TGG - chr7.2:68939545-68939564 MS.gene79173:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:68938521-68938540 None:intergenic 55.0%
AAAATGGTGCTCCCGCAGGC+GGG - chr7.2:68938617-68938636 MS.gene79173:CDS 60.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:68938632-68938651 None:intergenic 60.0%
CAAAATGGTGCTCCCGCAGG+CGG - chr7.2:68938616-68938635 MS.gene79173:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:68938587-68938606 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:68939520-68939539 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:68938502-68938521 MS.gene79173:CDS 60.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:68938631-68938650 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:68938501-68938520 MS.gene79173:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 68938199 68939683 68938199 ID=MS.gene79173
chr7.2 mRNA 68938199 68939683 68938199 ID=MS.gene79173.t1;Parent=MS.gene79173
chr7.2 exon 68939120 68939683 68939120 ID=MS.gene79173.t1.exon1;Parent=MS.gene79173.t1
chr7.2 CDS 68939120 68939683 68939120 ID=cds.MS.gene79173.t1;Parent=MS.gene79173.t1
chr7.2 exon 68938199 68938975 68938199 ID=MS.gene79173.t1.exon2;Parent=MS.gene79173.t1
chr7.2 CDS 68938199 68938975 68938199 ID=cds.MS.gene79173.t1;Parent=MS.gene79173.t1
Gene Sequence

>MS.gene79173

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAATTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCACCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAATGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCACTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCATATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAATCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTTCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGCAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGTGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCAGTAGCAGTGGCATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCACTTGCTGGGTGA
Protein sequence

>MS.gene79173.t1

MRFSRKTIAIAKFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESFLTNNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGHIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKNQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLQHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVSSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG