AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79174

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79174.t1 MTR_3g101030 79.294 425 68 4 39 443 5 429 0.0 664
MS.gene79174.t1 MTR_3g101050 72.707 447 67 7 1 442 1 397 0.0 602
MS.gene79174.t1 MTR_3g101010 80.157 383 69 3 66 443 9 389 0.0 592
MS.gene79174.t1 MTR_3g018740 70.341 381 107 3 65 441 8 386 0.0 521
MS.gene79174.t1 MTR_8g027395 67.003 397 123 4 49 443 7 397 0.0 520
MS.gene79174.t1 MTR_4g045707 67.692 390 119 4 57 443 3 388 0.0 511
MS.gene79174.t1 MTR_8g461160 65.816 392 127 2 57 441 1 392 1.01e-178 505
MS.gene79174.t1 MTR_8g027420 66.492 382 112 4 64 443 8 375 2.17e-175 496
MS.gene79174.t1 MTR_3g101180 64.824 398 125 5 57 441 3 398 2.41e-173 491
MS.gene79174.t1 MTR_3g048000 63.636 385 118 4 60 441 25 390 6.37e-169 480
MS.gene79174.t1 MTR_7g451890 62.338 385 138 2 66 443 18 402 8.59e-168 477
MS.gene79174.t1 MTR_4g088525 65.934 364 119 3 81 442 8 368 1.15e-166 473
MS.gene79174.t1 MTR_7g050810 62.176 386 137 3 66 443 20 404 1.27e-165 472
MS.gene79174.t1 MTR_4g088535 65.274 383 110 6 58 438 5 366 2.91e-165 470
MS.gene79174.t1 MTR_7g047780 61.818 385 140 2 66 443 18 402 1.11e-164 469
MS.gene79174.t1 MTR_2g046030 63.281 384 129 5 65 441 8 386 6.02e-163 464
MS.gene79174.t1 MTR_7g050750 61.299 385 142 2 66 443 12 396 1.23e-162 464
MS.gene79174.t1 MTR_3g101130 61.399 386 142 3 62 443 7 389 1.77e-162 463
MS.gene79174.t1 MTR_2g045980 63.446 383 128 5 66 441 9 386 3.20e-162 462
MS.gene79174.t1 MTR_3g015620 62.663 383 112 5 66 441 20 378 1.39e-152 438
MS.gene79174.t1 MTR_3g100995 75.591 254 60 1 192 443 11 264 4.85e-140 402
MS.gene79174.t1 MTR_3g102920 58.575 379 114 5 70 441 66 408 2.58e-138 403
MS.gene79174.t1 MTR_3g101200 55.014 369 138 4 78 441 45 390 8.33e-127 373
MS.gene79174.t1 MTR_3g101190 54.918 366 99 5 83 443 8 312 6.27e-125 365
MS.gene79174.t1 MTR_3g018747 68.726 259 62 3 188 441 9 253 6.03e-120 350
MS.gene79174.t1 MTR_3g100010 58.075 322 87 2 85 373 38 344 3.84e-116 344
MS.gene79174.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 3.71e-111 330
MS.gene79174.t1 MTR_3g015760 60.870 276 97 4 173 441 8 279 2.87e-100 301
MS.gene79174.t1 MTR_3g111160 68.421 209 60 3 240 443 13 220 6.90e-89 270
MS.gene79174.t1 MTR_3g100520 61.644 219 70 3 229 443 1 209 2.89e-87 265
MS.gene79174.t1 MTR_3g114310 42.569 397 204 11 64 443 21 410 1.28e-86 271
MS.gene79174.t1 MTR_3g101110 60.251 239 60 4 188 417 68 280 8.89e-86 264
MS.gene79174.t1 MTR_3g099970 66.154 195 49 2 188 381 20 198 3.45e-83 254
MS.gene79174.t1 MTR_2g046410 63.861 202 64 4 248 441 147 347 1.46e-78 248
MS.gene79174.t1 MTR_3g101020 66.848 184 35 2 262 443 1 160 2.83e-77 238
MS.gene79174.t1 MTR_3g111150 58.427 178 48 2 65 242 2 153 1.41e-61 197
MS.gene79174.t1 MTR_3g101150 61.146 157 52 2 294 441 1 157 1.95e-58 189
MS.gene79174.t1 MTR_3g102870 59.211 152 60 1 251 400 1 152 2.67e-55 181
MS.gene79174.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 2.37e-44 162
MS.gene79174.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 2.34e-24 97.1
MS.gene79174.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 7.02e-20 85.9
MS.gene79174.t1 MTR_3g101140 61.538 65 21 1 383 443 52 116 2.67e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79174.t1 AT1G47710 53.061 392 173 5 57 441 3 390 2.51e-143 415
MS.gene79174.t1 AT1G47710 52.346 405 181 6 44 441 18 417 2.92e-143 416
MS.gene79174.t1 AT3G45220 48.718 390 177 7 66 440 9 390 7.47e-123 363
MS.gene79174.t1 AT2G25240 47.769 381 186 6 66 440 9 382 3.84e-117 348
MS.gene79174.t1 AT2G26390 46.615 384 190 5 66 440 9 386 3.79e-114 340
MS.gene79174.t1 AT1G62170 42.896 366 181 4 85 442 88 433 6.41e-97 298
MS.gene79174.t1 AT2G14540 41.579 380 198 5 66 440 37 397 8.84e-94 289
MS.gene79174.t1 AT1G64030 40.945 381 201 6 66 440 9 371 3.40e-93 286
MS.gene79174.t1 AT2G35580 41.935 372 186 8 81 440 18 371 2.64e-90 279
MS.gene79174.t1 AT1G62170 39.348 399 181 5 85 442 88 466 5.22e-90 281
MS.gene79174.t1 AT1G64010 46.262 214 94 4 229 440 1 195 6.53e-59 192
MS.gene79174.t1 AT1G64010 46.231 199 86 4 244 440 2 181 4.74e-53 176
MS.gene79174.t1 AT1G62160 40.782 179 86 4 266 442 60 220 5.36e-36 132
MS.gene79174.t1 AT1G63280 53.043 115 50 2 188 300 8 120 9.98e-33 120
MS.gene79174.t1 AT1G51330 50.450 111 52 2 187 294 30 140 1.60e-24 100
MS.gene79174.t1 AT1G64020 32.432 111 72 3 70 179 13 121 2.47e-12 63.9

Find 103 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-68927831 MS.gene79174:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-68927932 MS.gene79174:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+68927663 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+68928412 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-68927427 MS.gene79174:CDS
CGCATCTGATGCAGTCAGTA+TGG 0.276049 7.2:-68927313 MS.gene79174:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+68928535 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-68927501 MS.gene79174:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-68927201 MS.gene79174:CDS
GAAGAAGCAGAGAACAAATT+TGG 0.317759 7.2:+68928619 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+68927502 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-68927592 MS.gene79174:CDS
GGCTTCCGAATCTGAGTTAC+TGG 0.338294 7.2:-68927571 MS.gene79174:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+68927929 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-68928202 MS.gene79174:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-68927527 MS.gene79174:CDS
GGCAGCCCATCTTGTGCATT+TGG 0.369527 7.2:+68927612 None:intergenic
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+68927501 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+68928427 None:intergenic
GTTGAGTTGATCGGTCGATT+TGG 0.382394 7.2:+68928289 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+68927332 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+68927770 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-68927225 MS.gene79174:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+68928169 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+68928168 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-68928405 MS.gene79174:CDS
GATGTTGAATGGGATCGATT+TGG 0.423165 7.2:+68928522 None:intergenic
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+68928155 None:intergenic
TTCCTTCCAAATGCACAAGA+TGG 0.428926 7.2:-68927618 MS.gene79174:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-68927754 MS.gene79174:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+68927757 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-68927220 MS.gene79174:CDS
TCTCTAATCATAAACAAGAA+AGG 0.443816 7.2:+68927255 None:intergenic
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-68927544 MS.gene79174:CDS
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-68927357 MS.gene79174:CDS
GTTGATCGGTCGATTTGGAT+TGG 0.460855 7.2:+68928294 None:intergenic
CTCTAATCATAAACAAGAAA+GGG 0.468439 7.2:+68927256 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-68928347 MS.gene79174:CDS
TCAAAGAACTTCTTCCTCTA+GGG 0.473973 7.2:-68927884 MS.gene79174:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-68928164 MS.gene79174:CDS
GTGTTCCAGTAACTCAGATT+CGG 0.474362 7.2:+68927566 None:intergenic
ATCAAAGAACTTCTTCCTCT+AGG 0.484467 7.2:-68927885 MS.gene79174:CDS
ATGATTAGAGAAGAATTGAC+TGG 0.486911 7.2:-68927243 MS.gene79174:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+68927591 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-68928201 MS.gene79174:CDS
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+68928221 None:intergenic
TCCTTCCAAATGCACAAGAT+GGG 0.494435 7.2:-68927617 MS.gene79174:CDS
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-68928356 MS.gene79174:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+68928323 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-68927931 MS.gene79174:CDS
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+68927667 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+68928545 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-68927200 MS.gene79174:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+68928331 None:intergenic
GAGAAGCTGTTGATGTTGAA+TGG 0.512945 7.2:+68928511 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+68928322 None:intergenic
GCTATGGTTGTTTGCGAGGG+AGG 0.521590 7.2:+68928469 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+68928438 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+68928374 None:intergenic
GCCCATCTTGTGCATTTGGA+AGG 0.526536 7.2:+68927616 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-68927672 MS.gene79174:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-68928348 MS.gene79174:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-68927824 MS.gene79174:CDS
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:-68927468 MS.gene79174:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-68928232 MS.gene79174:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-68928236 MS.gene79174:CDS
AGAAGCTGTTGATGTTGAAT+GGG 0.554031 7.2:+68928512 None:intergenic
AATGACGGAGACGAGTATAG+AGG 0.554390 7.2:+68928259 None:intergenic
GGAGACGAGTATAGAGGCGA+AGG 0.558466 7.2:+68928265 None:intergenic
CGTTGCTATGGTTGTTTGCG+AGG 0.559095 7.2:+68928465 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+68927537 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.564663 7.2:+68927285 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-68928209 MS.gene79174:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-68927537 MS.gene79174:CDS
GTCTCCGTCATTCTACAAAA+CGG 0.567880 7.2:-68928248 MS.gene79174:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-68928108 MS.gene79174:intron
GATCGGTCGATTTGGATTGG+AGG 0.573657 7.2:+68928297 None:intergenic
GCATCTGATGCAGTCAGTAT+GGG 0.576573 7.2:-68927312 MS.gene79174:CDS
GTTGCTATGGTTGTTTGCGA+GGG 0.577691 7.2:+68928466 None:intergenic
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+68928324 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+68927435 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+68927189 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-68928233 MS.gene79174:CDS
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+68928439 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-68927475 MS.gene79174:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+68928220 None:intergenic
GCAGAGAACAAATTTGGCGA+TGG 0.609644 7.2:+68928625 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+68928453 None:intergenic
TTGCGAGGGAGGATTCTGAT+CGG 0.616661 7.2:+68928480 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.618285 7.2:+68928280 None:intergenic
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-68928603 MS.gene79174:CDS
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-68928198 MS.gene79174:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-68927912 MS.gene79174:CDS
ACTGACTGCATCAGATGCGG+TGG 0.645350 7.2:+68927317 None:intergenic
CGAGGGAGGATTCTGATCGG+AGG 0.645667 7.2:+68928483 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.649781 7.2:-68927880 MS.gene79174:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+68928433 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-68927863 MS.gene79174:CDS
CATACTGACTGCATCAGATG+CGG 0.683885 7.2:+68927314 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:-68927463 MS.gene79174:CDS
AACTCGACTAGACTTTGTAG+CGG 0.708512 7.2:-68927283 MS.gene79174:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+68928209 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+68927870 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:68927813-68927832 None:intergenic 15.0%
!!! ATTGATTTTAAGTTTTGATA+TGG - chr7.2:68927874-68927893 MS.gene79174:CDS 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:68928348-68928367 None:intergenic 20.0%
!!! GAATAATAATTTTGATGCTT+CGG - chr7.2:68928045-68928064 MS.gene79174:intron 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:68927442-68927461 MS.gene79174:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:68928080-68928099 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:68928346-68928365 MS.gene79174:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:68928349-68928368 None:intergenic 25.0%
! CTCTAATCATAAACAAGAAA+GGG + chr7.2:68928594-68928613 None:intergenic 25.0%
! TCTCTAATCATAAACAAGAA+AGG + chr7.2:68928595-68928614 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:68928490-68928509 MS.gene79174:CDS 25.0%
!! ACATGCATAAGTATTTTGTA+GGG + chr7.2:68927790-68927809 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:68928079-68928098 MS.gene79174:intron 25.0%
!!! AAGTTTTGATATGGTTTGAA+AGG - chr7.2:68927883-68927902 MS.gene79174:CDS 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:68928462-68928481 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:68928157-68928176 MS.gene79174:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:68927305-68927324 None:intergenic 30.0%
ATGATTAGAGAAGAATTGAC+TGG - chr7.2:68928604-68928623 MS.gene79174:CDS 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:68927438-68927457 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:68927916-68927935 MS.gene79174:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:68928093-68928112 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:68927915-68927934 MS.gene79174:CDS 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:68928187-68928206 None:intergenic 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:68928093-68928112 MS.gene79174:intron 30.0%
! AAGTATTTTGTAGGGAAAAG+AGG + chr7.2:68927782-68927801 None:intergenic 30.0%
! AGTATTTTGTAGGGAAAAGA+GGG + chr7.2:68927781-68927800 None:intergenic 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:68927283-68927302 None:intergenic 30.0%
! GACATGCATAAGTATTTTGT+AGG + chr7.2:68927791-68927810 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:68927423-68927442 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:68927315-68927334 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:68928627-68928646 MS.gene79174:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:68928622-68928641 MS.gene79174:CDS 35.0%
AGAAGCTGTTGATGTTGAAT+GGG + chr7.2:68927338-68927357 None:intergenic 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:68927921-68927940 None:intergenic 35.0%
ATCAAAGAACTTCTTCCTCT+AGG - chr7.2:68927962-68927981 MS.gene79174:intron 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:68928420-68928439 MS.gene79174:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:68927681-68927700 None:intergenic 35.0%
GAAGAAGCAGAGAACAAATT+TGG + chr7.2:68927231-68927250 None:intergenic 35.0%
TCAAAGAACTTCTTCCTCTA+GGG - chr7.2:68927963-68927982 MS.gene79174:intron 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:68927683-68927702 MS.gene79174:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:68928372-68928391 MS.gene79174:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:68927682-68927701 None:intergenic 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:68927290-68927309 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:68927695-68927714 None:intergenic 35.0%
! GTATTTTGTAGGGAAAAGAG+GGG + chr7.2:68927780-68927799 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:68927527-68927546 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:68928422-68928441 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:68927739-68927758 MS.gene79174:CDS 35.0%
AACTCGACTAGACTTTGTAG+CGG - chr7.2:68928564-68928583 MS.gene79174:CDS 40.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:68928320-68928339 MS.gene79174:CDS 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:68927476-68927495 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:68927646-68927665 MS.gene79174:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:68928303-68928322 MS.gene79174:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:68928313-68928332 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:68928310-68928329 MS.gene79174:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:68928183-68928202 None:intergenic 40.0%
GAGAAGCTGTTGATGTTGAA+TGG + chr7.2:68927339-68927358 None:intergenic 40.0%
GATGTTGAATGGGATCGATT+TGG + chr7.2:68927328-68927347 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:68928016-68928035 MS.gene79174:intron 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:68927599-68927618 MS.gene79174:CDS 40.0%
GTGTTCCAGTAACTCAGATT+CGG + chr7.2:68928284-68928303 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:68927645-68927664 MS.gene79174:CDS 40.0%
TCCTTCCAAATGCACAAGAT+GGG - chr7.2:68928230-68928249 MS.gene79174:CDS 40.0%
TTCCTTCCAAATGCACAAGA+TGG - chr7.2:68928229-68928248 MS.gene79174:CDS 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:68927606-68927625 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:68927528-68927547 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:68928406-68928425 MS.gene79174:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:68927526-68927545 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:68928403-68928422 MS.gene79174:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:68927412-68927431 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:68927411-68927430 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:68927641-68927660 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:68927638-68927657 MS.gene79174:CDS 45.0%
GCAGAGAACAAATTTGGCGA+TGG + chr7.2:68927225-68927244 None:intergenic 45.0%
GCATCTGATGCAGTCAGTAT+GGG - chr7.2:68928535-68928554 MS.gene79174:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:68928565-68928584 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:68927417-68927436 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:68928415-68928434 None:intergenic 45.0%
GTTGCTATGGTTGTTTGCGA+GGG + chr7.2:68927384-68927403 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:68928379-68928398 MS.gene79174:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:68927935-68927954 MS.gene79174:CDS 45.0%
! AATGACGGAGACGAGTATAG+AGG + chr7.2:68927591-68927610 None:intergenic 45.0%
! CATACTGACTGCATCAGATG+CGG + chr7.2:68928536-68928555 None:intergenic 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:68928023-68928042 MS.gene79174:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:68928175-68928194 MS.gene79174:CDS 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:68927967-68927986 MS.gene79174:intron 45.0%
!! GTTGAGTTGATCGGTCGATT+TGG + chr7.2:68927561-68927580 None:intergenic 45.0%
!! GTTGATCGGTCGATTTGGAT+TGG + chr7.2:68927556-68927575 None:intergenic 45.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:68928647-68928666 MS.gene79174:CDS 50.0%
CGCATCTGATGCAGTCAGTA+TGG - chr7.2:68928534-68928553 MS.gene79174:CDS 50.0%
CGTTGCTATGGTTGTTTGCG+AGG + chr7.2:68927385-68927404 None:intergenic 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:68927244-68927263 MS.gene79174:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:68928255-68928274 MS.gene79174:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:68928259-68928278 None:intergenic 50.0%
GCCCATCTTGTGCATTTGGA+AGG + chr7.2:68928234-68928253 None:intergenic 50.0%
GGCTTCCGAATCTGAGTTAC+TGG - chr7.2:68928276-68928295 MS.gene79174:CDS 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:68927984-68928003 MS.gene79174:intron 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:68927397-68927416 None:intergenic 50.0%
TTGCGAGGGAGGATTCTGAT+CGG + chr7.2:68927370-68927389 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:68927649-68927668 MS.gene79174:CDS 50.0%
!! GATCGGTCGATTTGGATTGG+AGG + chr7.2:68927553-68927572 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:68927570-68927589 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:68927980-68927999 None:intergenic 55.0%
ACTGACTGCATCAGATGCGG+TGG + chr7.2:68928533-68928552 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:68928646-68928665 MS.gene79174:CDS 55.0%
GCTATGGTTGTTTGCGAGGG+AGG + chr7.2:68927381-68927400 None:intergenic 55.0%
GGAGACGAGTATAGAGGCGA+AGG + chr7.2:68927585-68927604 None:intergenic 55.0%
GGCAGCCCATCTTGTGCATT+TGG + chr7.2:68928238-68928257 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:68927491-68927510 MS.gene79174:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG - chr7.2:68928384-68928403 MS.gene79174:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:68927519-68927538 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:68927630-68927649 None:intergenic 60.0%
CGAGGGAGGATTCTGATCGG+AGG + chr7.2:68927367-68927386 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:68927611-68927630 MS.gene79174:CDS 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:68928518-68928537 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:68927500-68927519 MS.gene79174:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:68927615-68927634 MS.gene79174:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:68927614-68927633 MS.gene79174:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:68927629-68927648 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:68927499-68927518 MS.gene79174:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 68927197 68928672 68927197 ID=MS.gene79174
chr7.2 mRNA 68927197 68928672 68927197 ID=MS.gene79174.t1;Parent=MS.gene79174
chr7.2 exon 68928109 68928672 68928109 ID=MS.gene79174.t1.exon1;Parent=MS.gene79174.t1
chr7.2 CDS 68928109 68928672 68928109 ID=cds.MS.gene79174.t1;Parent=MS.gene79174.t1
chr7.2 exon 68927197 68927964 68927197 ID=MS.gene79174.t1.exon2;Parent=MS.gene79174.t1
chr7.2 CDS 68927197 68927964 68927197 ID=cds.MS.gene79174.t1;Parent=MS.gene79174.t1
Gene Sequence

>MS.gene79174

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAATTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCATTCAACATCAACAGCTTCTCGATTTCCTCCGATCAGAATCCTCCCTCGCAAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCGACCGATCAACTCAACTCCTTCGCCTCTATACTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCCCTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAGTTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATCAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATAATAATTTTGATGCTTCGGATACAAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTCCTTCCAAATGCACAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGGAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCAGTATGGGTTTTCCAACTCGACTAGACTTTGTAGCGGATCACCCTTTCTTGTTTATGATTAGAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene79174.t1

MRFSRKTIAIAKFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPIQHQQLLDFLRSESSLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNNNFDASDTNAYDFHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAQDGLPTLLEKLASESELLEHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVSMGFPTRLDFVADHPFLFMIREELTGTIIFVGQVLNPLAG