AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79175

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79175.t1 MTR_3g101030 80.000 425 68 3 39 446 5 429 0.0 667
MS.gene79175.t1 MTR_3g101050 72.545 448 69 7 1 445 1 397 0.0 597
MS.gene79175.t1 MTR_3g101010 80.418 383 71 2 66 446 9 389 0.0 593
MS.gene79175.t1 MTR_3g018740 69.452 383 110 3 65 444 8 386 1.10e-179 516
MS.gene79175.t1 MTR_8g027395 67.532 385 117 3 64 446 19 397 4.32e-178 512
MS.gene79175.t1 MTR_4g045707 66.582 392 123 5 57 446 3 388 1.17e-173 500
MS.gene79175.t1 MTR_8g461160 65.306 392 132 2 57 444 1 392 8.46e-172 496
MS.gene79175.t1 MTR_8g027420 64.675 385 117 4 64 446 8 375 2.06e-167 484
MS.gene79175.t1 MTR_3g101180 63.819 398 132 4 57 444 3 398 2.11e-167 485
MS.gene79175.t1 MTR_3g048000 62.887 388 119 5 60 444 25 390 3.23e-162 471
MS.gene79175.t1 MTR_7g451890 59.701 402 156 3 49 446 3 402 6.41e-161 468
MS.gene79175.t1 MTR_4g088525 64.754 366 121 3 81 444 8 367 5.09e-159 462
MS.gene79175.t1 MTR_2g046030 63.212 386 129 5 65 444 8 386 1.21e-158 462
MS.gene79175.t1 MTR_2g045980 63.212 386 129 5 65 444 8 386 2.45e-158 461
MS.gene79175.t1 MTR_7g050810 60.925 389 140 3 66 446 20 404 3.38e-158 462
MS.gene79175.t1 MTR_7g047780 59.701 402 156 3 49 446 3 402 4.51e-158 461
MS.gene79175.t1 MTR_4g088535 63.990 386 113 6 58 441 5 366 1.67e-157 459
MS.gene79175.t1 MTR_7g050750 60.519 385 148 2 66 446 12 396 2.28e-155 454
MS.gene79175.t1 MTR_3g101130 59.948 382 150 2 66 446 10 389 2.82e-154 451
MS.gene79175.t1 MTR_3g015620 60.519 385 122 6 65 444 19 378 2.15e-145 428
MS.gene79175.t1 MTR_3g100995 75.294 255 62 1 192 446 11 264 9.86e-135 396
MS.gene79175.t1 MTR_3g102920 58.684 380 115 6 70 444 66 408 1.30e-133 399
MS.gene79175.t1 MTR_7g029240 81.452 248 19 2 447 669 179 424 7.92e-125 377
MS.gene79175.t1 MTR_3g101200 55.014 369 141 4 78 444 45 390 7.19e-121 365
MS.gene79175.t1 MTR_3g101190 53.804 368 103 4 83 446 8 312 3.33e-119 358
MS.gene79175.t1 MTR_3g018747 68.462 260 64 3 188 444 9 253 1.11e-116 350
MS.gene79175.t1 MTR_3g100010 57.862 318 86 2 85 369 38 340 4.24e-111 338
MS.gene79175.t1 MTR_7g050830 54.545 308 109 2 68 355 22 318 7.45e-106 324
MS.gene79175.t1 MTR_3g015760 58.065 279 103 4 173 444 8 279 1.33e-94 293
MS.gene79175.t1 MTR_3g111160 68.095 210 62 2 240 446 13 220 2.00e-86 270
MS.gene79175.t1 MTR_3g100520 60.811 222 70 3 229 446 1 209 1.44e-84 265
MS.gene79175.t1 MTR_3g101110 60.251 239 63 4 188 420 68 280 2.30e-83 265
MS.gene79175.t1 MTR_7g112430 54.138 290 82 11 424 667 137 421 6.14e-83 268
MS.gene79175.t1 MTR_3g114310 41.935 403 207 12 64 449 21 413 6.53e-82 265
MS.gene79175.t1 MTR_3g099970 66.154 195 49 2 188 381 20 198 2.04e-79 251
MS.gene79175.t1 MTR_2g046410 64.039 203 65 3 248 444 147 347 9.04e-76 247
MS.gene79175.t1 MTR_1g083750 50.172 291 92 12 424 666 45 330 1.99e-74 243
MS.gene79175.t1 MTR_3g101020 67.027 185 36 2 262 446 1 160 7.19e-74 235
MS.gene79175.t1 MTR_1g083750 50.172 291 92 12 424 666 137 422 2.41e-73 243
MS.gene79175.t1 MTR_3g101540 43.493 292 109 12 424 666 135 419 3.67e-59 205
MS.gene79175.t1 MTR_3g101540 43.493 292 109 12 424 666 135 419 3.72e-59 205
MS.gene79175.t1 MTR_3g111150 57.865 178 49 2 65 242 2 153 4.64e-59 196
MS.gene79175.t1 MTR_1g019760 43.493 292 112 10 424 668 134 419 6.74e-58 202
MS.gene79175.t1 MTR_3g101150 61.392 158 55 2 294 445 1 158 1.66e-56 189
MS.gene79175.t1 MTR_3g102870 57.143 161 67 1 251 409 1 161 5.92e-54 182
MS.gene79175.t1 MTR_1g110210 54.857 175 56 5 424 579 137 307 9.75e-50 176
MS.gene79175.t1 MTR_1g019760 47.111 225 76 8 424 609 134 354 7.15e-46 168
MS.gene79175.t1 MTR_3g100990 58.108 148 59 2 66 213 9 153 6.53e-43 162
MS.gene79175.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 5.41e-24 97.1
MS.gene79175.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 7.78e-20 86.7
MS.gene79175.t1 MTR_3g101140 63.077 65 23 1 383 446 52 116 3.55e-16 75.5
MS.gene79175.t1 MTR_1g014640 36.496 137 76 5 449 584 210 336 4.12e-12 68.6
MS.gene79175.t1 MTR_1g013400 36.496 137 76 5 449 584 210 336 4.12e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79175.t1 AT1G47710 52.880 382 175 3 67 444 10 390 7.81e-138 409
MS.gene79175.t1 AT1G47710 51.358 405 188 4 44 444 18 417 1.89e-137 409
MS.gene79175.t1 AT3G45220 47.301 389 187 5 66 443 9 390 1.31e-114 349
MS.gene79175.t1 AT2G25240 47.135 384 187 7 66 443 9 382 3.21e-109 335
MS.gene79175.t1 AT2G26390 46.253 387 190 6 66 443 9 386 2.55e-107 330
MS.gene79175.t1 AT1G62170 42.507 367 184 4 85 445 88 433 2.05e-91 291
MS.gene79175.t1 AT2G14540 44.010 384 186 6 66 443 37 397 1.25e-89 285
MS.gene79175.t1 AT1G64030 42.708 384 193 7 66 443 9 371 7.45e-88 280
MS.gene79175.t1 AT2G35580 41.935 372 189 7 81 443 18 371 6.73e-86 274
MS.gene79175.t1 AT1G62170 39.000 400 184 5 85 445 88 466 1.58e-84 274
MS.gene79175.t1 AT1G09160 50.172 291 92 12 424 667 137 421 5.94e-72 239
MS.gene79175.t1 AT1G09160 50.172 291 92 12 424 667 137 421 5.94e-72 239
MS.gene79175.t1 AT1G68410 49.488 293 95 11 424 667 142 430 2.10e-70 236
MS.gene79175.t1 AT1G68410 49.488 293 95 11 424 667 142 430 2.10e-70 236
MS.gene79175.t1 AT1G68410 49.488 293 95 11 424 667 142 430 2.10e-70 236
MS.gene79175.t1 AT1G68410 49.488 293 95 11 424 667 142 430 2.10e-70 236
MS.gene79175.t1 AT1G47380 44.828 290 108 10 424 666 133 417 6.11e-61 210
MS.gene79175.t1 AT1G64010 46.296 216 94 4 229 443 1 195 9.07e-56 189
MS.gene79175.t1 AT1G64010 46.269 201 86 4 244 443 2 181 7.07e-50 172
MS.gene79175.t1 AT1G62160 40.110 182 86 4 266 445 60 220 1.58e-33 128
MS.gene79175.t1 AT1G63280 51.304 115 52 2 188 300 8 120 5.88e-30 114
MS.gene79175.t1 AT1G51330 48.649 111 54 2 187 294 30 140 1.70e-22 96.3
MS.gene79175.t1 AT1G64020 32.432 111 72 3 70 179 13 121 3.23e-12 64.3

Find 161 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTTTCGTCGATGGTTTA+TGG 0.158405 7.2:-68914758 MS.gene79175:CDS
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-68914387 MS.gene79175:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-68914488 MS.gene79175:CDS
TTGTCTTCGCCTTGCTTATA+AGG 0.248930 7.2:+68914219 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+68914968 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-68913983 MS.gene79175:CDS
ATCTTTCGTCGATGGTTTAT+GGG 0.279350 7.2:-68914757 MS.gene79175:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+68915091 None:intergenic
TCATAGCCTCCGATGGTGTT+TGG 0.287715 7.2:-68912330 MS.gene79175:CDS
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-68914057 MS.gene79175:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-68913748 MS.gene79175:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+68914845 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+68914058 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-68914148 MS.gene79175:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+68914485 None:intergenic
GAAGAAGCAGAGAACAAAAT+TGG 0.347022 7.2:+68915175 None:intergenic
ATTCAAAAGGTGACAATCAT+AGG 0.353674 7.2:+68914326 None:intergenic
CATAGCCTCCGATGGTGTTT+GGG 0.354249 7.2:-68912329 MS.gene79175:CDS
TCAATAGGAGACGCAGATCT+AGG 0.356749 7.2:-68912430 MS.gene79175:CDS
TTTCTTCCAAATGCAAAAGA+TGG 0.358663 7.2:-68914174 MS.gene79175:CDS
TCCGCTGCTGCCACCACCAT+TGG 0.367191 7.2:+68912360 None:intergenic
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-68914083 MS.gene79175:CDS
AACCTTGCTGATAGCTTTGT+TGG 0.374344 7.2:+68912067 None:intergenic
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+68914057 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+68914983 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+68913888 None:intergenic
GGCCCTCTTCGCGTTTGGCC+TGG 0.386611 7.2:-68912472 MS.gene79175:CDS
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-68913772 MS.gene79175:CDS
TGGAAGATAATGTGGAAGAG+AGG 0.397087 7.2:-68912546 MS.gene79175:CDS
GCACAAACTGTCGGAAGAAA+AGG 0.401952 7.2:-68911863 MS.gene79175:CDS
TTATGTCTATCTAGATCAAT+AGG 0.411648 7.2:-68912445 MS.gene79175:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+68914725 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+68914724 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-68914961 MS.gene79175:CDS
GTGGTGGCCCTCTTCGCGTT+TGG 0.422128 7.2:-68912477 MS.gene79175:CDS
ACTTGCTTAACATGTGGTAT+TGG 0.424208 7.2:+68912394 None:intergenic
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+68914711 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-68914441 MS.gene79175:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-68914310 MS.gene79175:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+68914313 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-68913767 MS.gene79175:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-68914440 MS.gene79175:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-68914100 MS.gene79175:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+68915078 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-68913913 MS.gene79175:CDS
AGGGTTCTGTGTTTATAGAA+AGG 0.450479 7.2:-68912016 MS.gene79175:CDS
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:+68913802 None:intergenic
TGCTGCAAAGCTAGTGGTTG+AGG 0.454795 7.2:-68912251 MS.gene79175:CDS
TGCCAGCGGGTTGATCCTCT+TGG 0.457835 7.2:+68911934 None:intergenic
GGTTGATCCTCTTGGCAAAT+CGG 0.459240 7.2:+68911942 None:intergenic
AATTCATAATATTAGACCAT+TGG 0.464300 7.2:+68911819 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-68914903 MS.gene79175:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-68914720 MS.gene79175:CDS
TCGGAAGAAAAGGGATATCA+TGG 0.484861 7.2:-68911853 MS.gene79175:CDS
TTCTTCCAAATGCAAAAGAT+GGG 0.486946 7.2:-68914173 MS.gene79175:CDS
GTGGAAGATTTATTTGAAGA+GGG 0.487400 7.2:-68912035 MS.gene79175:CDS
GCTATGGTTGTTGGCGAGGA+AGG 0.487621 7.2:+68915025 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.489339 7.2:-68914765 MS.gene79175:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+68914147 None:intergenic
GTGTTGCAGTAACTCAGATT+CGG 0.491692 7.2:+68914122 None:intergenic
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+68914777 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-68914912 MS.gene79175:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+68914879 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-68914487 MS.gene79175:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+68914850 None:intergenic
CTTCGCCTTGCTTATAAGGA+AGG 0.497710 7.2:+68914223 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+68915101 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-68913747 MS.gene79175:intron
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+68914887 None:intergenic
TGCAGTCAGTAGCAGTGGCA+TGG 0.511284 7.2:-68913860 MS.gene79175:CDS
CCTCTTCGCGTTTGGCCTGG+TGG 0.511520 7.2:-68912469 MS.gene79175:CDS
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:-68913790 MS.gene79175:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:+68913803 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+68915016 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+68914878 None:intergenic
CACAAACTGTCGGAAGAAAA+GGG 0.520513 7.2:-68911862 MS.gene79175:CDS
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+68913832 None:intergenic
CAATAGGAGACGCAGATCTA+GGG 0.523092 7.2:-68912429 MS.gene79175:CDS
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+68914994 None:intergenic
TCTGTGTTTATAGAAAGGTT+TGG 0.525266 7.2:-68912011 MS.gene79175:CDS
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+68914930 None:intergenic
TAGACCGTTGAATTCTCCAT+TGG 0.526729 7.2:-68911901 MS.gene79175:CDS
CACCAGGCCAAACGCGAAGA+GGG 0.526903 7.2:+68912470 None:intergenic
TCCAATGGTGGTGGCAGCAG+CGG 0.528317 7.2:-68912361 MS.gene79175:CDS
CTTGGCCTTCCTTATAAGCA+AGG 0.532609 7.2:-68914228 MS.gene79175:CDS
GCAGTCAGTAGCAGTGGCAT+GGG 0.532869 7.2:-68913859 MS.gene79175:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-68914904 MS.gene79175:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-68914380 MS.gene79175:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+68914853 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+68914815 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+68914821 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.537977 7.2:+68915021 None:intergenic
GAGGATCAACCCGCTGGCAA+TGG 0.545778 7.2:-68911930 MS.gene79175:CDS
GAGGAAGCTATAATATCTAA+AGG 0.546374 7.2:-68912232 MS.gene79175:CDS
TCTGATATGCTGAAGGAGCT+AGG 0.547156 7.2:-68914024 MS.gene79175:CDS
CAGCTGTCCGATTTGCCAAG+AGG 0.547598 7.2:-68911949 MS.gene79175:CDS
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-68914788 MS.gene79175:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-68914792 MS.gene79175:CDS
TGTGGAAGATTTATTTGAAG+AGG 0.550439 7.2:-68912036 MS.gene79175:CDS
AACAAAGCTATCAGCAAGGT+TGG 0.556506 7.2:-68912065 MS.gene79175:CDS
ATGGTGGTGGCAGCAGCGGA+AGG 0.557302 7.2:-68912357 MS.gene79175:CDS
CAGCAAGGTTGGTGTTGTTG+TGG 0.561995 7.2:-68912054 MS.gene79175:CDS
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+68914093 None:intergenic
GGGATATCATGGAAGGAAAG+AGG 0.564636 7.2:-68911842 MS.gene79175:CDS
TGCCAAGAGGATCAACCCGC+TGG 0.564881 7.2:-68911936 MS.gene79175:CDS
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+68915067 None:intergenic
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-68914093 MS.gene79175:CDS
TTTCGTCGATGGTTTATGGG+TGG 0.570484 7.2:-68914754 MS.gene79175:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-68914664 MS.gene79175:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-68914804 MS.gene79175:CDS
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+68914880 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+68913991 None:intergenic
CCGTTGAATTCTCCATTGGA+AGG 0.580734 7.2:-68911897 MS.gene79175:CDS
GGAAGATAATGTGGAAGAGA+GGG 0.583371 7.2:-68912545 MS.gene79175:CDS
CCACCAGGCCAAACGCGAAG+AGG 0.586707 7.2:+68912469 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+68913736 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-68914789 MS.gene79175:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+68914808 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+68914995 None:intergenic
AAACTACTTTCCAATGGTGG+TGG 0.600967 7.2:-68912370 MS.gene79175:CDS
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+68914836 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-68914031 MS.gene79175:CDS
CTAGATAGACATAATCCACC+AGG 0.603809 7.2:+68912454 None:intergenic
AAGAAAAGGGATATCATGGA+AGG 0.604789 7.2:-68911849 MS.gene79175:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+68914776 None:intergenic
GCAGAGAACAAAATTGGCGA+TGG 0.606690 7.2:+68915181 None:intergenic
GGATGCTTTATCAAATGACA+TGG 0.609265 7.2:-68912308 MS.gene79175:CDS
CTAGATATACCATTGCCAGC+GGG 0.610649 7.2:+68911921 None:intergenic
CAAGTCAAACTACTTTCCAA+TGG 0.612728 7.2:-68912376 MS.gene79175:CDS
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+68915009 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-68914436 MS.gene79175:CDS
AGGGAGCGTGTTATTGCAAG+TGG 0.614814 7.2:-68912526 MS.gene79175:CDS
GTCAAACTACTTTCCAATGG+TGG 0.616035 7.2:-68912373 MS.gene79175:CDS
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-68915159 MS.gene79175:CDS
TCACAGGCTGGAAGATAATG+TGG 0.619365 7.2:-68912554 MS.gene79175:intron
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+68915068 None:intergenic
AGTTTGACTTGCTTAACATG+TGG 0.624940 7.2:+68912388 None:intergenic
ATGGCAGCAGCAGCATGTCG+AGG 0.626209 7.2:-68912289 MS.gene79175:CDS
AGGCTTATCATAGCCTCCGA+TGG 0.629263 7.2:-68912337 MS.gene79175:CDS
TGGCGAGGAAGGATTCTGAT+CGG 0.634681 7.2:+68915036 None:intergenic
TAAAGCATCCCAAACACCAT+CGG 0.635547 7.2:+68912321 None:intergenic
TCTGATGCAGTCAGTAGCAG+TGG 0.636122 7.2:-68913865 MS.gene79175:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-68914468 MS.gene79175:CDS
CCTTCCAATGGAGAATTCAA+CGG 0.637364 7.2:+68911897 None:intergenic
ACTGACTGCATCAGATGCGG+TGG 0.641619 7.2:+68913873 None:intergenic
AATACAGGGAGGTGATCAGA+AGG 0.643153 7.2:+68912172 None:intergenic
AGAATTTGCTGCAAAGCTAG+TGG 0.650112 7.2:-68912257 MS.gene79175:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+68914989 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-68914419 MS.gene79175:CDS
AGCATCCCAAACACCATCGG+AGG 0.663223 7.2:+68912324 None:intergenic
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+68914839 None:intergenic
CGAGGAAGGATTCTGATCGG+AGG 0.668188 7.2:+68915039 None:intergenic
GCTACTGACTGCATCAGATG+CGG 0.675085 7.2:+68913870 None:intergenic
TACCAACAAAGCTATCAGCA+AGG 0.675328 7.2:-68912069 MS.gene79175:CDS
TCTAGATATACCATTGCCAG+CGG 0.676986 7.2:+68911920 None:intergenic
CATGGAAGGAAAGAGGCCAA+TGG 0.679026 7.2:-68911835 MS.gene79175:CDS
GAGCGTGTTATTGCAAGTGG+TGG 0.694435 7.2:-68912523 MS.gene79175:CDS
AAAAGACACGATTATCGTGG+TGG 0.695438 7.2:-68912493 MS.gene79175:CDS
CCATCGACGAAAGATAGATG+AGG 0.702172 7.2:+68914765 None:intergenic
TATGCTGAAGGAGCTAGGTG+TGG 0.709172 7.2:-68914019 MS.gene79175:CDS
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+68914426 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTCAAAAAAAAAAAAAAAT+CGG - chr7.2:68913841-68913860 MS.gene79175:CDS 10.0%
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:68912507-68912526 MS.gene79175:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:68912446-68912465 None:intergenic 15.0%
!!! ATGTTTTGTGAAATTAAAAT+AGG - chr7.2:68913806-68913825 MS.gene79175:CDS 15.0%
!! AAAAAAACATCTATGACATA+TGG + chr7.2:68913526-68913545 None:intergenic 20.0%
!! AAAAAGAATATTTGAGTCAA+TGG + chr7.2:68913778-68913797 None:intergenic 20.0%
!! ACAATATGATGTTAGTAAAA+TGG - chr7.2:68913463-68913482 MS.gene79175:intron 20.0%
!! ATAAATAAACTACATAACCT+AGG - chr7.2:68914327-68914346 MS.gene79175:CDS 20.0%
!! ATTAAGACAAACATACTTAT+AGG - chr7.2:68914173-68914192 MS.gene79175:CDS 20.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:68912981-68913000 None:intergenic 20.0%
!! CAATATGATGTTAGTAAAAT+GGG - chr7.2:68913464-68913483 MS.gene79175:intron 20.0%
!! CTATAATCATAAACAAGAAA+GGG + chr7.2:68913236-68913255 None:intergenic 20.0%
!! TAAATAAACTACATAACCTA+GGG - chr7.2:68914328-68914347 MS.gene79175:CDS 20.0%
!! TCTATAATCATAAACAAGAA+AGG + chr7.2:68913237-68913256 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:68912516-68912535 MS.gene79175:CDS 20.0%
!!! ATTTTTTTTTTGTACTTGCA+TGG - chr7.2:68913870-68913889 MS.gene79175:CDS 20.0%
!!! TAGTTTTATCAAGAAACTTT+TGG - chr7.2:68913939-68913958 MS.gene79175:CDS 20.0%
! AACAAAACATAAAACCAGAA+TGG + chr7.2:68914040-68914059 None:intergenic 25.0%
! ATAGTGGTAAACATTAAATC+TGG - chr7.2:68913683-68913702 MS.gene79175:intron 25.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:68912075-68912094 MS.gene79175:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG - chr7.2:68913246-68913265 MS.gene79175:intron 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:68912979-68912998 MS.gene79175:intron 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:68912982-68913001 None:intergenic 25.0%
! TGCTATTAATACCAACAAAT+TGG + chr7.2:68914134-68914153 None:intergenic 25.0%
! TGGATCAACAATAGATAATA+GGG - chr7.2:68913344-68913363 MS.gene79175:intron 25.0%
! TTATGTCTATCTAGATCAAT+AGG - chr7.2:68914591-68914610 MS.gene79175:intron 25.0%
! TTCTTAGATTTCTTTCGAAA+AGG + chr7.2:68914941-68914960 None:intergenic 25.0%
! TTGGATCAACAATAGATAAT+AGG - chr7.2:68913343-68913362 MS.gene79175:intron 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:68913123-68913142 MS.gene79175:intron 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:68912415-68912434 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:68912414-68912433 None:intergenic 25.0%
!! ATACAAAAGTATGAACTCTT+CGG + chr7.2:68913564-68913583 None:intergenic 25.0%
!!! ATTCTGGTTTTATGTTTTGT+TGG - chr7.2:68914039-68914058 MS.gene79175:CDS 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:68912678-68912697 MS.gene79175:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:68913095-68913114 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:68912790-68912809 MS.gene79175:intron 25.0%
!!! TTCTGGTTTTATGTTTTGTT+GGG - chr7.2:68914040-68914059 MS.gene79175:CDS 25.0%
AAAAAATATCACCCACACAT+GGG + chr7.2:68913430-68913449 None:intergenic 30.0%
AAGAATATTTGAGTCAATGG+AGG + chr7.2:68913775-68913794 None:intergenic 30.0%
ACATATGGAAACATATGGAA+AGG + chr7.2:68913511-68913530 None:intergenic 30.0%
AGTATCTACTAATATGCAAC+GGG + chr7.2:68914427-68914446 None:intergenic 30.0%
ATATTAGTAGATACTGAAGG+AGG - chr7.2:68914432-68914451 MS.gene79175:CDS 30.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:68911938-68911957 None:intergenic 30.0%
ATGGGATCATATCCAAATAT+AGG + chr7.2:68913412-68913431 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:68912595-68912614 MS.gene79175:intron 30.0%
ATTCAAAAGGTGACAATCAT+AGG + chr7.2:68912713-68912732 None:intergenic 30.0%
CAGTATCTACTAATATGCAA+CGG + chr7.2:68914428-68914447 None:intergenic 30.0%
CTATGACATATGGAAACATA+TGG + chr7.2:68913516-68913535 None:intergenic 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:68912071-68912090 None:intergenic 30.0%
GAAGGATATATAGAATCAGA+AGG - chr7.2:68913657-68913676 MS.gene79175:intron 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:68912549-68912568 MS.gene79175:CDS 30.0%
GAGGAAGCTATAATATCTAA+AGG - chr7.2:68914804-68914823 MS.gene79175:CDS 30.0%
GATGAAGATAGTCCTATATT+TGG - chr7.2:68913397-68913416 MS.gene79175:intron 30.0%
GGTAAACATTAAATCTGGTT+GGG - chr7.2:68913688-68913707 MS.gene79175:intron 30.0%
GTAAACATTAAATCTGGTTG+GGG - chr7.2:68913689-68913708 MS.gene79175:intron 30.0%
GTGGAAGATTTATTTGAAGA+GGG - chr7.2:68915001-68915020 MS.gene79175:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:68912726-68912745 None:intergenic 30.0%
TAGAATCAGAAGGAATATAG+TGG - chr7.2:68913667-68913686 MS.gene79175:intron 30.0%
TCCAAATATCCAATATAGTG+TGG + chr7.2:68913328-68913347 None:intergenic 30.0%
TCTGTGTTTATAGAAAGGTT+TGG - chr7.2:68915025-68915044 MS.gene79175:CDS 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:68912548-68912567 MS.gene79175:CDS 30.0%
TGAGTTGTCAAAGAAATTAG+AGG + chr7.2:68913609-68913628 None:intergenic 30.0%
TGCATATTAGTAGATACTGA+AGG - chr7.2:68914429-68914448 MS.gene79175:CDS 30.0%
TGGTAAACATTAAATCTGGT+TGG - chr7.2:68913687-68913706 MS.gene79175:intron 30.0%
TGTGGAAGATTTATTTGAAG+AGG - chr7.2:68915000-68915019 MS.gene79175:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:68912596-68912615 MS.gene79175:intron 30.0%
TTCTTCCAAATGCAAAAGAT+GGG - chr7.2:68912863-68912882 MS.gene79175:intron 30.0%
TTTCGAAAAGGAAAAAGAAG+CGG + chr7.2:68914929-68914948 None:intergenic 30.0%
TTTCTTCCAAATGCAAAAGA+TGG - chr7.2:68912862-68912881 MS.gene79175:intron 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:68912726-68912745 MS.gene79175:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:68911916-68911935 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:68912413-68912432 None:intergenic 30.0%
! TATGATTGTCACCTTTTGAA+TGG - chr7.2:68912712-68912731 MS.gene79175:intron 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:68912056-68912075 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:68911948-68911967 None:intergenic 30.0%
!! TTTTATGTTTTGTTGGGTTG+TGG - chr7.2:68914046-68914065 MS.gene79175:CDS 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:68913269-68913288 MS.gene79175:intron 35.0%
AAGAAAAGGGATATCATGGA+AGG - chr7.2:68915187-68915206 MS.gene79175:CDS 35.0%
AAGAGCTCCTTTGATCTTAA+GGG + chr7.2:68914107-68914126 None:intergenic 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:68913264-68913283 MS.gene79175:intron 35.0%
ACTTGCTTAACATGTGGTAT+TGG + chr7.2:68914645-68914664 None:intergenic 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:68912554-68912573 None:intergenic 35.0%
AGCTCTTGATACCAATTTGT+TGG - chr7.2:68914120-68914139 MS.gene79175:CDS 35.0%
AGGGTTCTGTGTTTATAGAA+AGG - chr7.2:68915020-68915039 MS.gene79175:CDS 35.0%
ATCTTTCGTCGATGGTTTAT+GGG - chr7.2:68912279-68912298 MS.gene79175:CDS 35.0%
ATGATATCTAACACCTGCTA+AGG - chr7.2:68913628-68913647 MS.gene79175:intron 35.0%
CAAAAAATATCACCCACACA+TGG + chr7.2:68913431-68913450 None:intergenic 35.0%
CAAGTCAAACTACTTTCCAA+TGG - chr7.2:68914660-68914679 MS.gene79175:intron 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:68913053-68913072 MS.gene79175:intron 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:68912314-68912333 None:intergenic 35.0%
GAAGAAGCAGAGAACAAAAT+TGG + chr7.2:68911864-68911883 None:intergenic 35.0%
GACAGTTTGTGCAGAAAAAT+GGG + chr7.2:68915165-68915184 None:intergenic 35.0%
GCCACACTATATTGGATATT+TGG - chr7.2:68913324-68913343 MS.gene79175:intron 35.0%
GGATGCTTTATCAAATGACA+TGG - chr7.2:68914728-68914747 MS.gene79175:CDS 35.0%
GTAAAAAGACACGATTATCG+TGG - chr7.2:68914540-68914559 MS.gene79175:intron 35.0%
TATCTTTCGTCGATGGTTTA+TGG - chr7.2:68912278-68912297 MS.gene79175:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:68912316-68912335 MS.gene79175:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:68913005-68913024 MS.gene79175:intron 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:68912315-68912334 None:intergenic 35.0%
TTGACTTCGGTTGTAATACA+GGG + chr7.2:68914881-68914900 None:intergenic 35.0%
TTTAGTGTGCCACACTATAT+TGG - chr7.2:68913316-68913335 MS.gene79175:intron 35.0%
! CATTTTTCTGCACAAACTGT+CGG - chr7.2:68915164-68915183 MS.gene79175:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:68911923-68911942 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:68912328-68912347 None:intergenic 35.0%
! TAGTTTTCTCCTGCAAATAC+AGG - chr7.2:68913985-68914004 MS.gene79175:CDS 35.0%
! TTCTTTCGTGTAGTTGACTT+CGG + chr7.2:68914894-68914913 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:68912160-68912179 None:intergenic 35.0%
!! AGTTTGACTTGCTTAACATG+TGG + chr7.2:68914651-68914670 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:68913055-68913074 None:intergenic 35.0%
!! TAGTGTTGAGTATTTTCCCT+AGG + chr7.2:68914347-68914366 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:68912372-68912391 MS.gene79175:CDS 35.0%
AAAAGACACGATTATCGTGG+TGG - chr7.2:68914543-68914562 MS.gene79175:intron 40.0%
AAACTACTTTCCAATGGTGG+TGG - chr7.2:68914666-68914685 MS.gene79175:CDS 40.0%
AAAGCTATGCAGTAGTAGTG+TGG + chr7.2:68913731-68913750 None:intergenic 40.0%
AACAAAGCTATCAGCAAGGT+TGG - chr7.2:68914971-68914990 MS.gene79175:CDS 40.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:68912953-68912972 MS.gene79175:intron 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:68911971-68911990 None:intergenic 40.0%
AGAGCTCCTTTGATCTTAAG+GGG + chr7.2:68914106-68914125 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:68912109-68912128 None:intergenic 40.0%
ATCCTTCCAATTACCTTAGC+AGG + chr7.2:68913644-68913663 None:intergenic 40.0%
ATGGAAACATATGGAAAGGC+AGG + chr7.2:68913507-68913526 None:intergenic 40.0%
CAAGAGCTCCTTTGATCTTA+AGG + chr7.2:68914108-68914127 None:intergenic 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:68912936-68912955 MS.gene79175:intron 40.0%
CACAAACTGTCGGAAGAAAA+GGG - chr7.2:68915174-68915193 MS.gene79175:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:68912946-68912965 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:68912943-68912962 MS.gene79175:intron 40.0%
CCTTCCAATGGAGAATTCAA+CGG + chr7.2:68915142-68915161 None:intergenic 40.0%
CGACAGTTTGTGCAGAAAAA+TGG + chr7.2:68915166-68915185 None:intergenic 40.0%
CTAACACCTGCTAAGGTAAT+TGG - chr7.2:68913635-68913654 MS.gene79175:intron 40.0%
CTAGATAGACATAATCCACC+AGG + chr7.2:68914585-68914604 None:intergenic 40.0%
CTATCCTTACTGTTGATCAC+AGG - chr7.2:68914466-68914485 MS.gene79175:CDS 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:68912649-68912668 MS.gene79175:intron 40.0%
GGAAGATAATGTGGAAGAGA+GGG - chr7.2:68914491-68914510 MS.gene79175:CDS 40.0%
GTCAAACTACTTTCCAATGG+TGG - chr7.2:68914663-68914682 MS.gene79175:intron 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:68912232-68912251 MS.gene79175:CDS 40.0%
GTGTTGCAGTAACTCAGATT+CGG + chr7.2:68912917-68912936 None:intergenic 40.0%
TACCAACAAAGCTATCAGCA+AGG - chr7.2:68914967-68914986 MS.gene79175:CDS 40.0%
TAGACCGTTGAATTCTCCAT+TGG - chr7.2:68915135-68915154 MS.gene79175:CDS 40.0%
TCGGAAGAAAAGGGATATCA+TGG - chr7.2:68915183-68915202 MS.gene79175:CDS 40.0%
TCTAGATATACCATTGCCAG+CGG + chr7.2:68915119-68915138 None:intergenic 40.0%
TGGAAGATAATGTGGAAGAG+AGG - chr7.2:68914490-68914509 MS.gene79175:CDS 40.0%
TTAGTAGATACTGAAGGAGG+AGG - chr7.2:68914435-68914454 MS.gene79175:CDS 40.0%
TTGGATATGATCCCATGTGT+GGG - chr7.2:68913416-68913435 MS.gene79175:intron 40.0%
TTGTCTTCGCCTTGCTTATA+AGG + chr7.2:68912820-68912839 None:intergenic 40.0%
TTTGGATATGATCCCATGTG+TGG - chr7.2:68913415-68913434 MS.gene79175:intron 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:68912239-68912258 None:intergenic 40.0%
! CACTATCACTACGTTTGTTG+TGG - chr7.2:68914362-68914381 MS.gene79175:CDS 40.0%
! GTTGACTTCGGTTGTAATAC+AGG + chr7.2:68914882-68914901 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:68912161-68912180 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:68913039-68913058 MS.gene79175:intron 40.0%
! TAAAGCATCCCAAACACCAT+CGG + chr7.2:68914718-68914737 None:intergenic 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:68912159-68912178 None:intergenic 40.0%
! TTTTCTCCTGCAAATACAGG+AGG - chr7.2:68913988-68914007 MS.gene79175:CDS 40.0%
!! AACCTTGCTGATAGCTTTGT+TGG + chr7.2:68914972-68914991 None:intergenic 40.0%
!! AGAATTTGCTGCAAAGCTAG+TGG - chr7.2:68914779-68914798 MS.gene79175:CDS 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:68913036-68913055 MS.gene79175:intron 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:68912045-68912064 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:68912044-68912063 None:intergenic 45.0%
AATACAGGGAGGTGATCAGA+AGG + chr7.2:68914867-68914886 None:intergenic 45.0%
ACTTCGGTTGTAATACAGGG+AGG + chr7.2:68914878-68914897 None:intergenic 45.0%
ATTGTGACTGTCGCATCTGT+TGG - chr7.2:68914396-68914415 MS.gene79175:CDS 45.0%
CAATAGGAGACGCAGATCTA+GGG - chr7.2:68914607-68914626 MS.gene79175:intron 45.0%
CACCTGCTAAGGTAATTGGA+AGG - chr7.2:68913639-68913658 MS.gene79175:intron 45.0%
CACTAAAATCACCCAGCAAG+AGG + chr7.2:68913303-68913322 None:intergenic 45.0%
CACTGTCCCCTTAAGATCAA+AGG - chr7.2:68914097-68914116 MS.gene79175:CDS 45.0%
CAGAAAAATGGGCCTTCCAA+TGG + chr7.2:68915154-68915173 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:68912274-68912293 None:intergenic 45.0%
CCGTTGAATTCTCCATTGGA+AGG - chr7.2:68915139-68915158 MS.gene79175:CDS 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:68912271-68912290 MS.gene79175:CDS 45.0%
CTAGATATACCATTGCCAGC+GGG + chr7.2:68915118-68915137 None:intergenic 45.0%
CTTCGCCTTGCTTATAAGGA+AGG + chr7.2:68912816-68912835 None:intergenic 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:68911972-68911991 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:68911961-68911980 None:intergenic 45.0%
GCACAAACTGTCGGAAGAAA+AGG - chr7.2:68915173-68915192 MS.gene79175:CDS 45.0%
GCAGAGAACAAAATTGGCGA+TGG + chr7.2:68911858-68911877 None:intergenic 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:68913207-68913226 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:68912023-68912042 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:68912050-68912069 None:intergenic 45.0%
GGAGTTGTTTGATGCCATTC+TGG - chr7.2:68914023-68914042 MS.gene79175:CDS 45.0%
GGGATATCATGGAAGGAAAG+AGG - chr7.2:68915194-68915213 MS.gene79175:CDS 45.0%
GGTTGATCCTCTTGGCAAAT+CGG + chr7.2:68915097-68915116 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:68913048-68913067 None:intergenic 45.0%
TCAATAGGAGACGCAGATCT+AGG - chr7.2:68914606-68914625 MS.gene79175:intron 45.0%
TCACAGGCTGGAAGATAATG+TGG - chr7.2:68914482-68914501 MS.gene79175:CDS 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:68913012-68913031 MS.gene79175:intron 45.0%
TGAGTCAATGGAGGAACACA+AGG + chr7.2:68913766-68913785 None:intergenic 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:68912568-68912587 MS.gene79175:intron 45.0%
TGTGTTGAGCAGTGTGAAGT+AGG + chr7.2:68914260-68914279 None:intergenic 45.0%
TTTCGTCGATGGTTTATGGG+TGG - chr7.2:68912282-68912301 MS.gene79175:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:68912656-68912675 MS.gene79175:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:68912808-68912827 MS.gene79175:intron 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:68912189-68912208 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:68912231-68912250 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:68912600-68912619 MS.gene79175:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:68912194-68912213 None:intergenic 45.0%
!!! TTTTGTATTTTAATAAATTT+TGG - chr7.2:68913576-68913595 MS.gene79175:intron 5.0%
AGGCTTATCATAGCCTCCGA+TGG - chr7.2:68914699-68914718 MS.gene79175:CDS 50.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:68913289-68913308 MS.gene79175:intron 50.0%
CATAGCCTCCGATGGTGTTT+GGG - chr7.2:68914707-68914726 MS.gene79175:CDS 50.0%
CATGGAAGGAAAGAGGCCAA+TGG - chr7.2:68915201-68915220 MS.gene79175:CDS 50.0%
CCAGCCTGTGATCAACAGTA+AGG + chr7.2:68914473-68914492 None:intergenic 50.0%
CCTTACTGTTGATCACAGGC+TGG - chr7.2:68914470-68914489 MS.gene79175:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:68911877-68911896 MS.gene79175:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:68912888-68912907 MS.gene79175:intron 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:68912892-68912911 None:intergenic 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:68912617-68912636 MS.gene79175:intron 50.0%
TATGCTGAAGGAGCTAGGTG+TGG - chr7.2:68913017-68913036 MS.gene79175:intron 50.0%
TCATAGCCTCCGATGGTGTT+TGG - chr7.2:68914706-68914725 MS.gene79175:CDS 50.0%
TCTCCTGCAAATACAGGAGG+TGG - chr7.2:68913991-68914010 MS.gene79175:CDS 50.0%
TCTGATGCAGTCAGTAGCAG+TGG - chr7.2:68913171-68913190 MS.gene79175:intron 50.0%
TGCTGCAAAGCTAGTGGTTG+AGG - chr7.2:68914785-68914804 MS.gene79175:CDS 50.0%
TGGCGAGGAAGGATTCTGAT+CGG + chr7.2:68912003-68912022 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:68912030-68912049 None:intergenic 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:68912224-68912243 None:intergenic 50.0%
! AGGGAGCGTGTTATTGCAAG+TGG - chr7.2:68914510-68914529 MS.gene79175:intron 50.0%
! GAGCGTGTTATTGCAAGTGG+TGG - chr7.2:68914513-68914532 MS.gene79175:intron 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:68912186-68912205 None:intergenic 50.0%
! GCTACTGACTGCATCAGATG+CGG + chr7.2:68913169-68913188 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:68912871-68912890 None:intergenic 50.0%
!! CAGCAAGGTTGGTGTTGTTG+TGG - chr7.2:68914982-68915001 MS.gene79175:CDS 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:68912200-68912219 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:68912203-68912222 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:68912613-68912632 None:intergenic 55.0%
ACTGACTGCATCAGATGCGG+TGG + chr7.2:68913166-68913185 None:intergenic 55.0%
AGCATCCCAAACACCATCGG+AGG + chr7.2:68914715-68914734 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:68913288-68913307 MS.gene79175:intron 55.0%
CCTCCACCTCCTGTATTTGC+AGG + chr7.2:68913997-68914016 None:intergenic 55.0%
CCTGCAAATACAGGAGGTGG+AGG - chr7.2:68913994-68914013 MS.gene79175:CDS 55.0%
CGAGGAAGGATTCTGATCGG+AGG + chr7.2:68912000-68912019 None:intergenic 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:68912018-68912037 None:intergenic 55.0%
GCAGTCAGTAGCAGTGGCAT+GGG - chr7.2:68913177-68913196 MS.gene79175:intron 55.0%
GCTATGGTTGTTGGCGAGGA+AGG + chr7.2:68912014-68912033 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:68912124-68912143 MS.gene79175:intron 55.0%
TACAGGAGGTGGAGGCAAAG+AGG - chr7.2:68914002-68914021 MS.gene79175:CDS 55.0%
TGCAGTCAGTAGCAGTGGCA+TGG - chr7.2:68913176-68913195 MS.gene79175:intron 55.0%
! CAGCTGTCCGATTTGCCAAG+AGG - chr7.2:68915087-68915106 MS.gene79175:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:68912152-68912171 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:68912263-68912282 None:intergenic 60.0%
ATGGCAGCAGCAGCATGTCG+AGG - chr7.2:68914747-68914766 MS.gene79175:CDS 60.0%
CACCAGGCCAAACGCGAAGA+GGG + chr7.2:68914569-68914588 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:68912244-68912263 MS.gene79175:CDS 60.0%
GAGGATCAACCCGCTGGCAA+TGG - chr7.2:68915106-68915125 MS.gene79175:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:68912218-68912237 None:intergenic 60.0%
TGCCAAGAGGATCAACCCGC+TGG - chr7.2:68915100-68915119 MS.gene79175:CDS 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:68913151-68913170 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:68912133-68912152 MS.gene79175:intron 60.0%
!! TCCAATGGTGGTGGCAGCAG+CGG - chr7.2:68914675-68914694 MS.gene79175:CDS 60.0%
!! TGCCAGCGGGTTGATCCTCT+TGG + chr7.2:68915105-68915124 None:intergenic 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:68912248-68912267 MS.gene79175:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:68912247-68912266 MS.gene79175:CDS 65.0%
CCACCAGGCCAAACGCGAAG+AGG + chr7.2:68914570-68914589 None:intergenic 65.0%
CCTCTTCGCGTTTGGCCTGG+TGG - chr7.2:68914567-68914586 MS.gene79175:intron 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:68912262-68912281 None:intergenic 65.0%
GTGGTGGCCCTCTTCGCGTT+TGG - chr7.2:68914559-68914578 MS.gene79175:intron 65.0%
TCCGCTGCTGCCACCACCAT+TGG + chr7.2:68914679-68914698 None:intergenic 65.0%
!! ATGGTGGTGGCAGCAGCGGA+AGG - chr7.2:68914679-68914698 MS.gene79175:CDS 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:68912132-68912151 MS.gene79175:intron 65.0%
GGCCCTCTTCGCGTTTGGCC+TGG - chr7.2:68914564-68914583 MS.gene79175:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 68911830 68915228 68911830 ID=MS.gene79175
chr7.2 mRNA 68911830 68915228 68911830 ID=MS.gene79175.t1;Parent=MS.gene79175
chr7.2 exon 68914665 68915228 68914665 ID=MS.gene79175.t1.exon1;Parent=MS.gene79175.t1
chr7.2 CDS 68914665 68915228 68914665 ID=cds.MS.gene79175.t1;Parent=MS.gene79175.t1
chr7.2 exon 68913748 68914520 68913748 ID=MS.gene79175.t1.exon2;Parent=MS.gene79175.t1
chr7.2 CDS 68913748 68914520 68913748 ID=cds.MS.gene79175.t1;Parent=MS.gene79175.t1
chr7.2 exon 68912177 68912570 68912177 ID=MS.gene79175.t1.exon3;Parent=MS.gene79175.t1
chr7.2 CDS 68912177 68912570 68912177 ID=cds.MS.gene79175.t1;Parent=MS.gene79175.t1
chr7.2 exon 68911830 68912108 68911830 ID=MS.gene79175.t1.exon4;Parent=MS.gene79175.t1
chr7.2 CDS 68911830 68912108 68911830 ID=cds.MS.gene79175.t1;Parent=MS.gene79175.t1
Gene Sequence

>MS.gene79175

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAATTTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTTCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTTTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTGTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGCGAAGACAAGCGTCAATTTACTATGTATTTTTTTCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGCAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGTGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCAGTAGCAGTGGCATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGATTTTAGTGTGCCACACTATATTGGATATTTGGATCAACAATAGATAATAGGGAATTTATTTTTTAATATATCGCGTGTTTATGATGAAGATAGTCCTATATTTGGATATGATCCCATGTGTGGGTGATATTTTTTGCATATTTTTCTGACAATATGATGTTAGTAAAATGGGTATGTGTAGATGATTTACCTGCCTTTCCATATGTTTCCATATGTCATAGATGTTTTTTTTTTTTTTCTTTCTTTCCGAAGAGTTCATACTTTTGTATTTTAATAAATTTTGGTAAACTTCCTCTAATTTCTTTGACAACTCATGATATCTAACACCTGCTAAGGTAATTGGAAGGATATATAGAATCAGAAGGAATATAGTGGTAAACATTAAATCTGGTTGGGGACACGAACATTTAATGCCACACTACTACTGCATAGCTTTCTTCAGTCTTCACCTTGTGTTCCTCCATTGACTCAAATATTCTTTTTTCTGTGTAATGTTTTGTGAAATTAAAATAGGATCTGTATTTTTCTTCAAAAAAAAAAAAAAATCGGATCTGTATTTTTTTTTTGTACTTGCATGGTAACATTATGCTGAGAAATTATAGACGATGATTAAATTGTAAATGTTAGTTTTATCAAGAAACTTTTGGTATTATGTTACTTTTCAAAGTCATAGTTTTCTCCTGCAAATACAGGAGGTGGAGGCAAAGAGGAGTTGTTTGATGCCATTCTGGTTTTATGTTTTGTTGGGTTGTGGTTTTCTCACTTTTTTTTTTTTAAATACTCACTGTCCCCTTAAGATCAAAGGAGCTCTTGATACCAATTTGTTGGTATTAATAGCATCAACATATGCTTTCATTCATTAAGACAAACATACTTATAGGAAATACATAGAGTACAAGATAAGTTTCTGCTGTACACACAGCTCAAAACAGACAAGATAGTCCTACTTCACACTGCTCAACACACTACACACTGCTCAATAATAATGTTCTACACTTAGTCATGACATTACATAAATAAACTACATAACCTAGGGAAAATACTCAACACTATCACTACGTTTGTTGTGGTTGATGAGAGTATTGTGACTGTCGCATCTGTTGGTGATTCCCGTTGCATATTAGTAGATACTGAAGGAGGAGGCGTAGTTTCTATCCTTACTGTTGATCACAGGCTGGAAGATAATGTGGAAGAGAGGGAGCGTGTTATTGCAAGTGGTGGTGAAGTAAAAAGACACGATTATCGTGGTGGCCCTCTTCGCGTTTGGCCTGGTGGATTATGTCTATCTAGATCAATAGGAGACGCAGATCTAGGGAAATATATTGTTCCAATACCACATGTTAAGCAAGTCAAACTACTTTCCAATGGTGGTGGCAGCAGCGGAAGGCTTATCATAGCCTCCGATGGTGTTTGGGATGCTTTATCAAATGACATGGCAGCAGCAGCATGTCGAGGTGTAGCTGCAGAATTTGCTGCAAAGCTAGTGGTTGAGGAAGCTATAATATCTAAAGGCTTGAGAGATGATACATCATGCATTGTTGTAGATATTCCTTCTGATCACCTCCCTGTATTACAACCGAAGTCAACTACACGAAAGAAATTGTGCTAAAACCGCTTCTTTTTCCTTTTCGAAAGAAATCTAAGAAGAACTCTACCAACAAAGCTATCAGCAAGGTTGGTGTTGTTGTGGAAGATTTATTTGAAGAGGGTTCTGTGTTTATAGAAAGGTTTGGCGATGATTTTTCACTTAATAACAACTCTCATCAGATTTTCAGCTGTCCGATTTGCCAAGAGGATCAACCCGCTGGCAATGGTATATCTAGACCGTTGAATTCTCCATTGGAAGGCCCATTTTTCTGCACAAACTGTCGGAAGAAAAGGGATATCATGGAAGGAAAGAGGCCAATGGTCTAA
Protein sequence

>MS.gene79175.t1

MRFSRKTIAIANFVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESFLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGLWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDCHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLQHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVSSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAGLEDNVEERERVIASGGEVKRHDYRGGPLRVWPGGLCLSRSIGDADLGKYIVPIPHVKQVKLLSNGGGSSGRLIIASDGVWDALSNDMAAAACRGVAAEFAAKLVVEEAIISKGLRDDTSCIVVDIPSDHLPKSKKNSTNKAISKVGVVVEDLFEEGSVFIERFGDDFSLNNNSHQIFSCPICQEDQPAGNGISRPLNSPLEGPFFCTNCRKKRDIMEGKRPMV