Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79227.t1 | XP_003601978.1 | 93.6 | 578 | 35 | 2 | 1 | 577 | 1 | 577 | 2.40E-300 | 1040.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79227.t1 | Q9MAH1 | 43.6 | 399 | 217 | 3 | 182 | 576 | 191 | 585 | 5.1e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79227.t1 | G7J3U4 | 93.6 | 578 | 35 | 2 | 1 | 577 | 1 | 577 | 1.7e-300 | 1040.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021587 | MS.gene79227 | PPI |
| MS.gene79227 | MS.gene015906 | PPI |
| MS.gene86308 | MS.gene79227 | PPI |
| MS.gene79227 | MS.gene54083 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79227.t1 | MTR_3g087480 | 96.367 | 578 | 19 | 2 | 1 | 577 | 1 | 577 | 0.0 | 1146 |
| MS.gene79227.t1 | MTR_3g074230 | 58.333 | 360 | 143 | 2 | 220 | 576 | 189 | 544 | 1.98e-143 | 428 |
| MS.gene79227.t1 | MTR_3g074230 | 58.333 | 360 | 143 | 2 | 220 | 576 | 189 | 544 | 8.38e-143 | 428 |
| MS.gene79227.t1 | MTR_5g063200 | 52.970 | 404 | 176 | 3 | 173 | 576 | 175 | 564 | 9.06e-142 | 426 |
| MS.gene79227.t1 | MTR_2g078020 | 48.267 | 375 | 187 | 1 | 209 | 576 | 208 | 582 | 2.78e-123 | 377 |
| MS.gene79227.t1 | MTR_2g078020 | 48.267 | 375 | 187 | 1 | 209 | 576 | 208 | 582 | 1.38e-122 | 377 |
| MS.gene79227.t1 | MTR_6g013475 | 79.231 | 130 | 23 | 2 | 88 | 216 | 3 | 129 | 4.68e-62 | 201 |
| MS.gene79227.t1 | MTR_4g076240 | 25.753 | 365 | 210 | 12 | 223 | 531 | 527 | 886 | 2.04e-21 | 99.4 |
| MS.gene79227.t1 | MTR_2g090135 | 34.921 | 126 | 73 | 2 | 459 | 575 | 101 | 226 | 1.36e-15 | 77.8 |
| MS.gene79227.t1 | MTR_7g090940 | 25.459 | 381 | 225 | 12 | 224 | 551 | 658 | 1032 | 2.27e-15 | 80.5 |
| MS.gene79227.t1 | MTR_7g059150 | 34.959 | 123 | 70 | 2 | 443 | 555 | 79 | 201 | 2.46e-14 | 73.9 |
| MS.gene79227.t1 | MTR_1g030300 | 31.034 | 145 | 98 | 1 | 204 | 348 | 165 | 307 | 2.16e-13 | 73.2 |
| MS.gene79227.t1 | MTR_3g452710 | 33.945 | 109 | 70 | 1 | 223 | 329 | 12 | 120 | 1.11e-12 | 71.2 |
| MS.gene79227.t1 | MTR_3g452710 | 33.945 | 109 | 70 | 1 | 223 | 329 | 12 | 120 | 1.62e-12 | 70.5 |
| MS.gene79227.t1 | MTR_2g090135 | 37.255 | 102 | 56 | 2 | 459 | 552 | 101 | 202 | 1.71e-12 | 67.0 |
| MS.gene79227.t1 | MTR_1g041435 | 28.571 | 105 | 75 | 0 | 460 | 564 | 15 | 119 | 4.04e-12 | 68.2 |
| MS.gene79227.t1 | MTR_1g084100 | 33.929 | 112 | 73 | 1 | 463 | 574 | 98 | 208 | 1.08e-11 | 67.8 |
| MS.gene79227.t1 | MTR_5g012030 | 32.673 | 101 | 68 | 0 | 460 | 560 | 396 | 496 | 1.26e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79227.t1 | AT5G65160 | 54.925 | 599 | 222 | 10 | 7 | 576 | 11 | 590 | 0.0 | 631 |
| MS.gene79227.t1 | AT5G10090 | 60.211 | 475 | 179 | 3 | 105 | 576 | 124 | 591 | 0.0 | 583 |
| MS.gene79227.t1 | AT1G78120 | 54.247 | 365 | 166 | 1 | 214 | 577 | 151 | 515 | 1.35e-127 | 385 |
| MS.gene79227.t1 | AT2G42580 | 49.859 | 355 | 174 | 1 | 221 | 571 | 219 | 573 | 3.41e-112 | 350 |
| MS.gene79227.t1 | AT1G78120 | 53.846 | 325 | 149 | 1 | 214 | 537 | 151 | 475 | 1.61e-108 | 334 |
| MS.gene79227.t1 | AT1G53300 | 46.537 | 361 | 187 | 3 | 221 | 576 | 226 | 585 | 1.53e-105 | 333 |
| MS.gene79227.t1 | AT3G58620 | 45.856 | 362 | 192 | 2 | 214 | 571 | 203 | 564 | 1.40e-103 | 327 |
| MS.gene79227.t1 | AT3G14950 | 44.722 | 360 | 195 | 1 | 221 | 576 | 257 | 616 | 1.66e-103 | 328 |
| MS.gene79227.t1 | AT3G58620 | 45.856 | 362 | 192 | 2 | 214 | 571 | 203 | 564 | 1.80e-103 | 327 |
| MS.gene79227.t1 | AT2G41520 | 25.587 | 426 | 241 | 17 | 217 | 575 | 545 | 961 | 6.25e-22 | 101 |
| MS.gene79227.t1 | AT2G41520 | 25.587 | 426 | 241 | 17 | 217 | 575 | 445 | 861 | 7.78e-22 | 100 |
| MS.gene79227.t1 | AT5G12430 | 26.371 | 383 | 229 | 12 | 223 | 556 | 609 | 987 | 1.57e-21 | 100 |
| MS.gene79227.t1 | AT2G41520 | 25.436 | 401 | 242 | 15 | 217 | 575 | 545 | 930 | 2.40e-16 | 83.6 |
| MS.gene79227.t1 | AT4G12400 | 24.860 | 358 | 237 | 11 | 223 | 568 | 3 | 340 | 2.99e-14 | 75.9 |
| MS.gene79227.t1 | AT4G12400 | 24.860 | 358 | 237 | 11 | 223 | 568 | 3 | 340 | 3.09e-14 | 76.3 |
| MS.gene79227.t1 | AT4G12400 | 31.683 | 101 | 69 | 0 | 460 | 560 | 373 | 473 | 9.79e-11 | 65.1 |
| MS.gene79227.t1 | AT1G04190 | 30.769 | 130 | 89 | 1 | 446 | 575 | 5 | 133 | 4.53e-13 | 70.9 |
| MS.gene79227.t1 | AT3G04240 | 25.143 | 350 | 215 | 10 | 234 | 556 | 167 | 496 | 6.89e-13 | 72.4 |
| MS.gene79227.t1 | AT4G30480 | 32.540 | 126 | 76 | 2 | 459 | 575 | 108 | 233 | 1.84e-12 | 68.6 |
| MS.gene79227.t1 | AT4G08320 | 34.694 | 98 | 64 | 0 | 213 | 310 | 166 | 263 | 5.17e-12 | 68.6 |
| MS.gene79227.t1 | AT4G08320 | 34.694 | 98 | 64 | 0 | 213 | 310 | 166 | 263 | 6.54e-12 | 68.2 |
| MS.gene79227.t1 | AT4G30480 | 36.559 | 93 | 52 | 1 | 459 | 544 | 108 | 200 | 4.14e-11 | 63.2 |
| MS.gene79227.t1 | AT1G56440 | 33.898 | 118 | 77 | 1 | 457 | 574 | 85 | 201 | 4.97e-11 | 65.9 |
| MS.gene79227.t1 | AT1G56440 | 33.898 | 118 | 77 | 1 | 457 | 574 | 75 | 191 | 4.98e-11 | 65.5 |
Find 112 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATGTTGTATGGAAATTT+AGG | 0.096719 | 3.1:+70349482 | MS.gene79227:CDS |
| ACCAATTGGTCCAAAGAATT+TGG | 0.157579 | 3.1:-70350679 | None:intergenic |
| AAAGAAGCTGTTGGTATTTC+AGG | 0.164915 | 3.1:+70349383 | MS.gene79227:CDS |
| GACGATTGTACCAAATTCTT+TGG | 0.195700 | 3.1:+70350669 | MS.gene79227:CDS |
| TTGTTTGCCATCTTGTTGTT+AGG | 0.206579 | 3.1:-70350894 | None:intergenic |
| CTATTTAATTCCTCATCTTC+TGG | 0.221444 | 3.1:-70351343 | None:intergenic |
| CTGCTTGTTTATAATGATAA+AGG | 0.245665 | 3.1:-70350120 | None:intergenic |
| GGATTAATGACAACAGTATT+TGG | 0.247419 | 3.1:+70349089 | MS.gene79227:CDS |
| ATGGAAATTTAGGGAATATT+AGG | 0.268159 | 3.1:+70349492 | MS.gene79227:CDS |
| GAACCACCACGTCGTCGTTT+TGG | 0.274837 | 3.1:-70349173 | None:intergenic |
| GAAATACCAACAGCTTCTTT+TGG | 0.293308 | 3.1:-70349380 | None:intergenic |
| CAGATTTGATGATGCTTTAG+AGG | 0.308396 | 3.1:+70350845 | MS.gene79227:intron |
| TCCAGAGCAGTTGAAAATAA+TGG | 0.313493 | 3.1:+70349715 | MS.gene79227:CDS |
| TTATGTTGTATGGAAATTTA+GGG | 0.317802 | 3.1:+70349483 | MS.gene79227:CDS |
| GATTAGGAAATTTGCACTTT+AGG | 0.321043 | 3.1:+70349936 | MS.gene79227:CDS |
| CTTCAACTGCTTTCTCCAAT+TGG | 0.321511 | 3.1:-70351085 | None:intergenic |
| TTTGGATCATTAACGTTGTT+TGG | 0.329256 | 3.1:-70349155 | None:intergenic |
| CCAGAGCAGTTGAAAATAAT+GGG | 0.331941 | 3.1:+70349716 | MS.gene79227:CDS |
| AGCTCTTCTCAACCTTGCTT+TGG | 0.339234 | 3.1:-70351144 | None:intergenic |
| ACCAAATTCTTTGGACCAAT+TGG | 0.343365 | 3.1:+70350678 | MS.gene79227:CDS |
| AATAAGAGTACTACTTCCTT+TGG | 0.349666 | 3.1:-70349441 | None:intergenic |
| ATCATTAACGTTGTTTGGTA+TGG | 0.365292 | 3.1:-70349150 | None:intergenic |
| AACAAATTTGAATTACCAAT+TGG | 0.367828 | 3.1:-70350693 | None:intergenic |
| TCCGAGGCTTGCGTTGCATA+TGG | 0.372273 | 3.1:+70350990 | MS.gene79227:CDS |
| GATGAATTTGAAACCTTTGA+TGG | 0.375854 | 3.1:-70349320 | None:intergenic |
| TGTTTGCCATCTTGTTGTTA+GGG | 0.377926 | 3.1:-70350893 | None:intergenic |
| CAAAGTAAAATAGAGTTATA+TGG | 0.380890 | 3.1:-70351032 | None:intergenic |
| TGCACCGGATGATAGAGTTT+TGG | 0.382756 | 3.1:-70350257 | None:intergenic |
| ACTCTTATTCGCGCTTCGTC+TGG | 0.385363 | 3.1:+70349455 | MS.gene79227:CDS |
| GGAATTAAATAGAGCATTGT+TGG | 0.387923 | 3.1:+70351354 | MS.gene79227:CDS |
| TTCACTTTAGCAACCTCATC+AGG | 0.390431 | 3.1:-70350157 | None:intergenic |
| TGCTTGTTTATAATGATAAA+GGG | 0.398764 | 3.1:-70350119 | None:intergenic |
| AACCTTGCTTTGGTGTAAGA+TGG | 0.401622 | 3.1:-70351134 | None:intergenic |
| TCTGGCAATGTTATGTTGTA+TGG | 0.402824 | 3.1:+70349473 | MS.gene79227:CDS |
| CATAGAGCTCATCATCGATT+AGG | 0.403953 | 3.1:+70349920 | MS.gene79227:CDS |
| CACGTGGTGGTTCACTTTGT+AGG | 0.410155 | 3.1:+70349672 | MS.gene79227:CDS |
| TAGATCAAAACTCGGCCAAT+TGG | 0.421549 | 3.1:+70351070 | MS.gene79227:CDS |
| ATGGATTATAGATGGAAAGA+TGG | 0.427946 | 3.1:+70351278 | MS.gene79227:intron |
| TAGAGCATTGTTGGAGGCTC+GGG | 0.429040 | 3.1:+70351363 | MS.gene79227:CDS |
| TTCTACCTTCAACTTGTTGG+TGG | 0.437992 | 3.1:-70349645 | None:intergenic |
| TGCACTGAGGCTCGCAGGTT+AGG | 0.440976 | 3.1:+70350205 | MS.gene79227:CDS |
| TTCAAATTCATCAACTACTC+AGG | 0.449757 | 3.1:+70349331 | MS.gene79227:CDS |
| CTGCTTTAACTGCTCTTGGT+AGG | 0.450208 | 3.1:+70349843 | MS.gene79227:CDS |
| ATTTCGCCAGAGAGAAAATC+AGG | 0.454949 | 3.1:+70349062 | MS.gene79227:CDS |
| AGTGCTGCTTTAACTGCTCT+TGG | 0.456396 | 3.1:+70349839 | MS.gene79227:CDS |
| GTGACAGCTGCAAGAGGAAG+AGG | 0.456849 | 3.1:+70350939 | MS.gene79227:CDS |
| TTGAAGCTGTGTTTGAATGT+AGG | 0.462334 | 3.1:+70349870 | MS.gene79227:CDS |
| TGGATTATAGATGGAAAGAT+GGG | 0.467551 | 3.1:+70351279 | MS.gene79227:intron |
| TCATTAACGTTGTTTGGTAT+GGG | 0.474787 | 3.1:-70349149 | None:intergenic |
| ATCATCCACCAACAAGTTGA+AGG | 0.475755 | 3.1:+70349640 | MS.gene79227:CDS |
| AGGCTCGCAGGTTAGGAGAT+TGG | 0.476698 | 3.1:+70350212 | MS.gene79227:CDS |
| GAAAGATGGGAAGCTTCAAT+AGG | 0.478223 | 3.1:+70351292 | MS.gene79227:CDS |
| ATAGAGCATTGTTGGAGGCT+CGG | 0.486677 | 3.1:+70351362 | MS.gene79227:CDS |
| ACGTGGTGGTTCACTTTGTA+GGG | 0.489232 | 3.1:+70349673 | MS.gene79227:CDS |
| ACCTTGCTTTGGTGTAAGAT+GGG | 0.490732 | 3.1:-70351133 | None:intergenic |
| AATGCAAATTCAAATGCAAA+AGG | 0.491684 | 3.1:+70349575 | MS.gene79227:CDS |
| TAGGGCTATATCAACTAGAA+TGG | 0.493499 | 3.1:+70349691 | MS.gene79227:CDS |
| TGAAGCTGTGTTTGAATGTA+GGG | 0.506829 | 3.1:+70349871 | MS.gene79227:CDS |
| GTTGAAAATAATGGGGAATG+AGG | 0.512910 | 3.1:+70349724 | MS.gene79227:CDS |
| GGCAAACAAGGTGTTGAGAA+AGG | 0.512946 | 3.1:+70350908 | MS.gene79227:CDS |
| CGGTGCAGATTCTGCTCCAC+AGG | 0.516911 | 3.1:+70350273 | MS.gene79227:CDS |
| CAGATTAGGAGAAACGGATA+AGG | 0.517315 | 3.1:+70350096 | MS.gene79227:intron |
| ACCTCCAAAACTCTATCATC+CGG | 0.524405 | 3.1:+70350253 | MS.gene79227:CDS |
| ATTTGATGAACAAGAAGACT+TGG | 0.528008 | 3.1:-70349264 | None:intergenic |
| CTTTATCATTATAAACAAGC+AGG | 0.531498 | 3.1:+70350121 | MS.gene79227:CDS |
| TCCATATGCAACGCAAGCCT+CGG | 0.535262 | 3.1:-70350991 | None:intergenic |
| TGCAATAGCTGCATCATACA+AGG | 0.535391 | 3.1:-70349780 | None:intergenic |
| TCAAATTCATCAACTACTCA+GGG | 0.541512 | 3.1:+70349332 | MS.gene79227:CDS |
| GTAAGTGCACTGAGGCTCGC+AGG | 0.542799 | 3.1:+70350200 | MS.gene79227:CDS |
| GCTCAAGTTGATATAGCTGC+TGG | 0.549363 | 3.1:+70350726 | MS.gene79227:CDS |
| TGATTACAGATTAGGAGAAA+CGG | 0.553077 | 3.1:+70350090 | MS.gene79227:intron |
| AAGAGAGACACCAGAAGATG+AGG | 0.555582 | 3.1:+70351333 | MS.gene79227:CDS |
| AACGCCACGTGGACCATCAA+AGG | 0.559475 | 3.1:+70349307 | MS.gene79227:CDS |
| ATTAAATAGAGCATTGTTGG+AGG | 0.561915 | 3.1:+70351357 | MS.gene79227:CDS |
| ACTCAGGGGTATGTTAATCA+AGG | 0.567874 | 3.1:+70349347 | MS.gene79227:CDS |
| GCTTGCGTTGCATATGGAGA+AGG | 0.573416 | 3.1:+70350996 | MS.gene79227:CDS |
| TGATGAGCTCTATGATAATG+AGG | 0.577068 | 3.1:-70349911 | None:intergenic |
| CTTGCGTTGCATATGGAGAA+GGG | 0.577562 | 3.1:+70350997 | MS.gene79227:CDS |
| CCAGAGAGAAAATCAGGCTG+TGG | 0.577805 | 3.1:+70349068 | MS.gene79227:CDS |
| TAATAGTTATTCAAATGCAA+TGG | 0.579556 | 3.1:+70349529 | MS.gene79227:CDS |
| ACGACGTGGTGGTTCAAAAG+AGG | 0.580831 | 3.1:+70349181 | MS.gene79227:CDS |
| AAGTTGATATAGCTGCTGGC+AGG | 0.584890 | 3.1:+70350730 | MS.gene79227:CDS |
| TAATGACAACAGTATTTGGA+AGG | 0.585909 | 3.1:+70349093 | MS.gene79227:CDS |
| TAACAACAAGATGGCAAACA+AGG | 0.586586 | 3.1:+70350896 | MS.gene79227:CDS |
| AAGAGCTGATTGTAATGCCA+AGG | 0.591062 | 3.1:+70351160 | MS.gene79227:CDS |
| CGAGCTGTGACAGCTGCAAG+AGG | 0.594817 | 3.1:+70350933 | MS.gene79227:CDS |
| ACTAGACCCTAACAACAAGA+TGG | 0.595527 | 3.1:+70350887 | MS.gene79227:CDS |
| GCAAATTCAAATGCAAAAGG+AGG | 0.597517 | 3.1:+70349578 | MS.gene79227:CDS |
| CAATCGTCAACATCAAAATG+AGG | 0.603192 | 3.1:-70350654 | None:intergenic |
| TGTCTGCATCTTGATGCCTA+CGG | 0.609966 | 3.1:-70350614 | None:intergenic |
| AGAGTTCCAAAAGAAGCTGT+TGG | 0.612914 | 3.1:+70349374 | MS.gene79227:CDS |
| CTGTGGAGCAGAATCTGCAC+CGG | 0.622358 | 3.1:-70350272 | None:intergenic |
| TTATAAACAAGCAGGATCAG+AGG | 0.623703 | 3.1:+70350129 | MS.gene79227:CDS |
| GCCCATCTTACACCAAAGCA+AGG | 0.628552 | 3.1:+70351132 | MS.gene79227:CDS |
| AATTTAGGGAATATTAGGCA+AGG | 0.632462 | 3.1:+70349497 | MS.gene79227:CDS |
| GATCCAAAACGACGACGTGG+TGG | 0.632918 | 3.1:+70349170 | MS.gene79227:CDS |
| AGGGGTATGTTAATCAAGGT+AGG | 0.636580 | 3.1:+70349351 | MS.gene79227:CDS |
| AAGCGCTGATAAAACTCCGT+AGG | 0.646518 | 3.1:+70350598 | MS.gene79227:CDS |
| CAGAAAACGACAACGCCACG+TGG | 0.652747 | 3.1:+70349296 | MS.gene79227:CDS |
| ATCAGAGGCTGATCCTGATG+AGG | 0.654133 | 3.1:+70350144 | MS.gene79227:CDS |
| TGACAACAGTATTTGGAAGG+CGG | 0.657393 | 3.1:+70349096 | MS.gene79227:CDS |
| CAGAGCAGTTGAAAATAATG+GGG | 0.660016 | 3.1:+70349717 | MS.gene79227:CDS |
| GCAGCTTGTAGATCAAAACT+CGG | 0.660130 | 3.1:+70351062 | MS.gene79227:CDS |
| GAAACCTTTGATGGTCCACG+TGG | 0.673817 | 3.1:-70349311 | None:intergenic |
| CAAGGCATCGAAATTCTCCG+AGG | 0.675699 | 3.1:+70350974 | MS.gene79227:CDS |
| CAACTTAAGAAACAACGAGG+TGG | 0.710109 | 3.1:+70351388 | MS.gene79227:CDS |
| CAAATTCATCAACTACTCAG+GGG | 0.711670 | 3.1:+70349333 | MS.gene79227:CDS |
| AGCAGTTGAAGATTGTACTG+CGG | 0.725831 | 3.1:+70351097 | MS.gene79227:CDS |
| AATGATCCAAAACGACGACG+TGG | 0.732125 | 3.1:+70349167 | MS.gene79227:CDS |
| TCATTTAAGTAAGTGCACTG+AGG | 0.735333 | 3.1:+70350192 | MS.gene79227:CDS |
| TATGGGAGCAGAACCCACAG+AGG | 0.785471 | 3.1:-70349132 | None:intergenic |
| GCGCAACTTAAGAAACAACG+AGG | 0.792961 | 3.1:+70351385 | MS.gene79227:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAATATTTTAAATTGTT+GGG | + | chr3.1:70351211-70351230 | MS.gene79227:intron | 10.0% |
| !!! | TAATGAATATTTTAAATTGT+TGG | + | chr3.1:70351210-70351229 | MS.gene79227:intron | 10.0% |
| !! | AACAAATTTGAATTACCAAT+TGG | - | chr3.1:70350696-70350715 | None:intergenic | 20.0% |
| !! | AACACAATATTAAATGATTG+TGG | - | chr3.1:70350823-70350842 | None:intergenic | 20.0% |
| !! | AACTTGTATATTAATTACCT+TGG | - | chr3.1:70351180-70351199 | None:intergenic | 20.0% |
| !! | CAAAGTAAAATAGAGTTATA+TGG | - | chr3.1:70351035-70351054 | None:intergenic | 20.0% |
| !! | TAATAGTTATTCAAATGCAA+TGG | + | chr3.1:70349529-70349548 | MS.gene79227:CDS | 20.0% |
| !! | TGCTTGTTTATAATGATAAA+GGG | - | chr3.1:70350122-70350141 | None:intergenic | 20.0% |
| !! | TTATGTTGTATGGAAATTTA+GGG | + | chr3.1:70349483-70349502 | MS.gene79227:CDS | 20.0% |
| !! | TTGAAGATATGATGATATAT+AGG | - | chr3.1:70350320-70350339 | None:intergenic | 20.0% |
| !!! | AATTTGCATTTTCAAAATAC+TGG | - | chr3.1:70349565-70349584 | None:intergenic | 20.0% |
| !!! | TAGTTTATGATTTTGAATTG+TGG | + | chr3.1:70350349-70350368 | MS.gene79227:intron | 20.0% |
| ! | AATGATCATCAAAAATCCAA+AGG | + | chr3.1:70349425-70349444 | MS.gene79227:CDS | 25.0% |
| ! | AATGCAAATTCAAATGCAAA+AGG | + | chr3.1:70349575-70349594 | MS.gene79227:CDS | 25.0% |
| ! | AATGTTTATGCATTGTGAAA+TGG | + | chr3.1:70351259-70351278 | MS.gene79227:intron | 25.0% |
| ! | ATGGAAATTTAGGGAATATT+AGG | + | chr3.1:70349492-70349511 | MS.gene79227:CDS | 25.0% |
| ! | CTGCTTGTTTATAATGATAA+AGG | - | chr3.1:70350123-70350142 | None:intergenic | 25.0% |
| ! | CTTGATATTGTAGTAAATTG+TGG | + | chr3.1:70350403-70350422 | MS.gene79227:intron | 25.0% |
| ! | CTTTATCATTATAAACAAGC+AGG | + | chr3.1:70350121-70350140 | MS.gene79227:CDS | 25.0% |
| ! | GTTATGTTGTATGGAAATTT+AGG | + | chr3.1:70349482-70349501 | MS.gene79227:CDS | 25.0% |
| ! | TTATAAAAATGGAAGATTCG+CGG | + | chr3.1:70349748-70349767 | MS.gene79227:CDS | 25.0% |
| !! | ATTATTGCTGATTACAGATT+AGG | + | chr3.1:70350082-70350101 | MS.gene79227:intron | 25.0% |
| !!! | AGGGTAATAGTTTTAATTTG+CGG | - | chr3.1:70350476-70350495 | None:intergenic | 25.0% |
| !!! | ATTGTGAAATGGATTATAGA+TGG | + | chr3.1:70351270-70351289 | MS.gene79227:intron | 25.0% |
| AATTTAGGGAATATTAGGCA+AGG | + | chr3.1:70349497-70349516 | MS.gene79227:CDS | 30.0% | |
| ATCATTAACGTTGTTTGGTA+TGG | - | chr3.1:70349153-70349172 | None:intergenic | 30.0% | |
| ATTTGATGAACAAGAAGACT+TGG | - | chr3.1:70349267-70349286 | None:intergenic | 30.0% | |
| CTATTTAATTCCTCATCTTC+TGG | - | chr3.1:70351346-70351365 | None:intergenic | 30.0% | |
| GATTAGGAAATTTGCACTTT+AGG | + | chr3.1:70349936-70349955 | MS.gene79227:CDS | 30.0% | |
| GGATTAATGACAACAGTATT+TGG | + | chr3.1:70349089-70349108 | MS.gene79227:CDS | 30.0% | |
| GGGAATGAGGATTATAAAAA+TGG | + | chr3.1:70349737-70349756 | MS.gene79227:CDS | 30.0% | |
| TAATGACAACAGTATTTGGA+AGG | + | chr3.1:70349093-70349112 | MS.gene79227:CDS | 30.0% | |
| TCAAATTCATCAACTACTCA+GGG | + | chr3.1:70349332-70349351 | MS.gene79227:CDS | 30.0% | |
| TCATTAACGTTGTTTGGTAT+GGG | - | chr3.1:70349152-70349171 | None:intergenic | 30.0% | |
| TGATTACAGATTAGGAGAAA+CGG | + | chr3.1:70350090-70350109 | MS.gene79227:intron | 30.0% | |
| TGGATTATAGATGGAAAGAT+GGG | + | chr3.1:70351279-70351298 | MS.gene79227:intron | 30.0% | |
| TTCAAATTCATCAACTACTC+AGG | + | chr3.1:70349331-70349350 | MS.gene79227:CDS | 30.0% | |
| TTTGGATCATTAACGTTGTT+TGG | - | chr3.1:70349158-70349177 | None:intergenic | 30.0% | |
| ! | ACTCTATTTTACTTTGCAAC+CGG | + | chr3.1:70351039-70351058 | MS.gene79227:CDS | 30.0% |
| ! | ATGGATTATAGATGGAAAGA+TGG | + | chr3.1:70351278-70351297 | MS.gene79227:intron | 30.0% |
| ! | GATGAATTTGAAACCTTTGA+TGG | - | chr3.1:70349323-70349342 | None:intergenic | 30.0% |
| ! | TTTTTCTACCTTCAACTTGT+TGG | - | chr3.1:70349651-70349670 | None:intergenic | 30.0% |
| !! | AATAAGAGTACTACTTCCTT+TGG | - | chr3.1:70349444-70349463 | None:intergenic | 30.0% |
| !! | ATTAAATAGAGCATTGTTGG+AGG | + | chr3.1:70351357-70351376 | MS.gene79227:CDS | 30.0% |
| !! | CTTCTATAAGAAGCTGTTTT+AGG | - | chr3.1:70349812-70349831 | None:intergenic | 30.0% |
| !! | GGAATTAAATAGAGCATTGT+TGG | + | chr3.1:70351354-70351373 | MS.gene79227:CDS | 30.0% |
| !! | GTGTTTGAAACATTTTGTGA+AGG | - | chr3.1:70349224-70349243 | None:intergenic | 30.0% |
| AAAGAAGCTGTTGGTATTTC+AGG | + | chr3.1:70349383-70349402 | MS.gene79227:CDS | 35.0% | |
| ACCAAATTCTTTGGACCAAT+TGG | + | chr3.1:70350678-70350697 | MS.gene79227:CDS | 35.0% | |
| ACCAATTGGTCCAAAGAATT+TGG | - | chr3.1:70350682-70350701 | None:intergenic | 35.0% | |
| ACGTGATAGAGAGATACATT+AGG | - | chr3.1:70350496-70350515 | None:intergenic | 35.0% | |
| AGCAAAATGTTACGTGTATC+TGG | - | chr3.1:70350017-70350036 | None:intergenic | 35.0% | |
| AGGAAATTTGCACTTTAGGT+AGG | + | chr3.1:70349940-70349959 | MS.gene79227:intron | 35.0% | |
| ATTGTGATTGCGATATATCG+TGG | + | chr3.1:70350431-70350450 | MS.gene79227:intron | 35.0% | |
| CAAATTCATCAACTACTCAG+GGG | + | chr3.1:70349333-70349352 | MS.gene79227:CDS | 35.0% | |
| CAATCGTCAACATCAAAATG+AGG | - | chr3.1:70350657-70350676 | None:intergenic | 35.0% | |
| CAGAGCAGTTGAAAATAATG+GGG | + | chr3.1:70349717-70349736 | MS.gene79227:CDS | 35.0% | |
| CCAGAGCAGTTGAAAATAAT+GGG | + | chr3.1:70349716-70349735 | MS.gene79227:CDS | 35.0% | |
| CGTGATAGAGAGATACATTA+GGG | - | chr3.1:70350495-70350514 | None:intergenic | 35.0% | |
| GACGATTGTACCAAATTCTT+TGG | + | chr3.1:70350669-70350688 | MS.gene79227:CDS | 35.0% | |
| GCAAATTCAAATGCAAAAGG+AGG | + | chr3.1:70349578-70349597 | MS.gene79227:CDS | 35.0% | |
| GCTTATATTTAAGAGCAGAG+CGG | + | chr3.1:70350034-70350053 | MS.gene79227:intron | 35.0% | |
| GGTACTCATCAGTTATTAAC+TGG | + | chr3.1:70350294-70350313 | MS.gene79227:intron | 35.0% | |
| TAACAACAAGATGGCAAACA+AGG | + | chr3.1:70350896-70350915 | MS.gene79227:CDS | 35.0% | |
| TAATAACTGATGAGTACCTG+TGG | - | chr3.1:70350292-70350311 | None:intergenic | 35.0% | |
| TAGGGCTATATCAACTAGAA+TGG | + | chr3.1:70349691-70349710 | MS.gene79227:CDS | 35.0% | |
| TCATTTAAGTAAGTGCACTG+AGG | + | chr3.1:70350192-70350211 | MS.gene79227:CDS | 35.0% | |
| TCCAGAGCAGTTGAAAATAA+TGG | + | chr3.1:70349715-70349734 | MS.gene79227:CDS | 35.0% | |
| TCGAAAAAAACATCCTCTGT+GGG | + | chr3.1:70349119-70349138 | MS.gene79227:CDS | 35.0% | |
| TCTGGCAATGTTATGTTGTA+TGG | + | chr3.1:70349473-70349492 | MS.gene79227:CDS | 35.0% | |
| TGAAGCTGTGTTTGAATGTA+GGG | + | chr3.1:70349871-70349890 | MS.gene79227:CDS | 35.0% | |
| TTATAAACAAGCAGGATCAG+AGG | + | chr3.1:70350129-70350148 | MS.gene79227:CDS | 35.0% | |
| TTGAAGCTGTGTTTGAATGT+AGG | + | chr3.1:70349870-70349889 | MS.gene79227:CDS | 35.0% | |
| TTGAAGGTAGAAAAATCACG+TGG | + | chr3.1:70349656-70349675 | MS.gene79227:CDS | 35.0% | |
| ! | CTCTATTTTACTTTGCAACC+GGG | + | chr3.1:70351040-70351059 | MS.gene79227:CDS | 35.0% |
| ! | GAAATACCAACAGCTTCTTT+TGG | - | chr3.1:70349383-70349402 | None:intergenic | 35.0% |
| ! | GTTGAAAATAATGGGGAATG+AGG | + | chr3.1:70349724-70349743 | MS.gene79227:CDS | 35.0% |
| ! | TGATGAGCTCTATGATAATG+AGG | - | chr3.1:70349914-70349933 | None:intergenic | 35.0% |
| !! | CAGATTTGATGATGCTTTAG+AGG | + | chr3.1:70350845-70350864 | MS.gene79227:intron | 35.0% |
| !! | TGTTTGCCATCTTGTTGTTA+GGG | - | chr3.1:70350896-70350915 | None:intergenic | 35.0% |
| !! | TTGTTTGCCATCTTGTTGTT+AGG | - | chr3.1:70350897-70350916 | None:intergenic | 35.0% |
| AAGAGCTGATTGTAATGCCA+AGG | + | chr3.1:70351160-70351179 | MS.gene79227:CDS | 40.0% | |
| AAGGTAGAAAAATCACGTGG+TGG | + | chr3.1:70349659-70349678 | MS.gene79227:CDS | 40.0% | |
| ACCTCCAAAACTCTATCATC+CGG | + | chr3.1:70350253-70350272 | MS.gene79227:CDS | 40.0% | |
| ACTAGACCCTAACAACAAGA+TGG | + | chr3.1:70350887-70350906 | MS.gene79227:CDS | 40.0% | |
| AGAGTTCCAAAAGAAGCTGT+TGG | + | chr3.1:70349374-70349393 | MS.gene79227:CDS | 40.0% | |
| AGCAGTTGAAGATTGTACTG+CGG | + | chr3.1:70351097-70351116 | MS.gene79227:CDS | 40.0% | |
| ATTTCGCCAGAGAGAAAATC+AGG | + | chr3.1:70349062-70349081 | MS.gene79227:CDS | 40.0% | |
| CAACTTAAGAAACAACGAGG+TGG | + | chr3.1:70351388-70351407 | MS.gene79227:CDS | 40.0% | |
| CAGATTAGGAGAAACGGATA+AGG | + | chr3.1:70350096-70350115 | MS.gene79227:intron | 40.0% | |
| CTTCAACTGCTTTCTCCAAT+TGG | - | chr3.1:70351088-70351107 | None:intergenic | 40.0% | |
| GAAAGATGGGAAGCTTCAAT+AGG | + | chr3.1:70351292-70351311 | MS.gene79227:CDS | 40.0% | |
| GCAGCTTGTAGATCAAAACT+CGG | + | chr3.1:70351062-70351081 | MS.gene79227:CDS | 40.0% | |
| GTCGAAAAAAACATCCTCTG+TGG | + | chr3.1:70349118-70349137 | MS.gene79227:CDS | 40.0% | |
| TAAAAATGGAAGATTCGCGG+AGG | + | chr3.1:70349751-70349770 | MS.gene79227:CDS | 40.0% | |
| TAGATCAAAACTCGGCCAAT+TGG | + | chr3.1:70351070-70351089 | MS.gene79227:CDS | 40.0% | |
| TGACAACAGTATTTGGAAGG+CGG | + | chr3.1:70349096-70349115 | MS.gene79227:CDS | 40.0% | |
| TGCAATAGCTGCATCATACA+AGG | - | chr3.1:70349783-70349802 | None:intergenic | 40.0% | |
| TTCACTTTAGCAACCTCATC+AGG | - | chr3.1:70350160-70350179 | None:intergenic | 40.0% | |
| ! | AACCTTGCTTTGGTGTAAGA+TGG | - | chr3.1:70351137-70351156 | None:intergenic | 40.0% |
| ! | AAGAGGAAACGAGCTTTTCA+AGG | + | chr3.1:70350956-70350975 | MS.gene79227:CDS | 40.0% |
| ! | ACCTTGCTTTGGTGTAAGAT+GGG | - | chr3.1:70351136-70351155 | None:intergenic | 40.0% |
| ! | ACTCAGGGGTATGTTAATCA+AGG | + | chr3.1:70349347-70349366 | MS.gene79227:CDS | 40.0% |
| ! | AGGGGTATGTTAATCAAGGT+AGG | + | chr3.1:70349351-70349370 | MS.gene79227:CDS | 40.0% |
| ! | ATCATCCACCAACAAGTTGA+AGG | + | chr3.1:70349640-70349659 | MS.gene79227:CDS | 40.0% |
| ! | CATAGAGCTCATCATCGATT+AGG | + | chr3.1:70349920-70349939 | MS.gene79227:CDS | 40.0% |
| ! | CCCATTATTTTCAACTGCTC+TGG | - | chr3.1:70349719-70349738 | None:intergenic | 40.0% |
| ! | TGTGCTGATATATGTGACAC+TGG | + | chr3.1:70350545-70350564 | MS.gene79227:intron | 40.0% |
| !! | TTCTACCTTCAACTTGTTGG+TGG | - | chr3.1:70349648-70349667 | None:intergenic | 40.0% |
| !!! | TGATAGAGTTTTGGAGGTCT+CGG | - | chr3.1:70350251-70350270 | None:intergenic | 40.0% |
| AAGAGAGACACCAGAAGATG+AGG | + | chr3.1:70351333-70351352 | MS.gene79227:CDS | 45.0% | |
| AATGATCCAAAACGACGACG+TGG | + | chr3.1:70349167-70349186 | MS.gene79227:CDS | 45.0% | |
| ACGTGGTGGTTCACTTTGTA+GGG | + | chr3.1:70349673-70349692 | MS.gene79227:CDS | 45.0% | |
| AGCTCTTCTCAACCTTGCTT+TGG | - | chr3.1:70351147-70351166 | None:intergenic | 45.0% | |
| CTGCTTTAACTGCTCTTGGT+AGG | + | chr3.1:70349843-70349862 | MS.gene79227:CDS | 45.0% | |
| CTTGCGTTGCATATGGAGAA+GGG | + | chr3.1:70350997-70351016 | MS.gene79227:CDS | 45.0% | |
| GCGCAACTTAAGAAACAACG+AGG | + | chr3.1:70351385-70351404 | MS.gene79227:CDS | 45.0% | |
| GTGGCCACAAAAACAATTGC+AGG | + | chr3.1:70350450-70350469 | MS.gene79227:intron | 45.0% | |
| TGTCTGCATCTTGATGCCTA+CGG | - | chr3.1:70350617-70350636 | None:intergenic | 45.0% | |
| ! | TGCACCGGATGATAGAGTTT+TGG | - | chr3.1:70350260-70350279 | None:intergenic | 45.0% |
| !! | AAGCGCTGATAAAACTCCGT+AGG | + | chr3.1:70350598-70350617 | MS.gene79227:CDS | 45.0% |
| !! | AAGTTGATATAGCTGCTGGC+AGG | + | chr3.1:70350730-70350749 | MS.gene79227:CDS | 45.0% |
| !! | ACCGGATGATAGAGTTTTGG+AGG | - | chr3.1:70350257-70350276 | None:intergenic | 45.0% |
| !! | ACGGAGTTTTATCAGCGCTT+CGG | - | chr3.1:70350598-70350617 | None:intergenic | 45.0% |
| !! | AGTGCTGCTTTAACTGCTCT+TGG | + | chr3.1:70349839-70349858 | MS.gene79227:CDS | 45.0% |
| !! | ATAGAGCATTGTTGGAGGCT+CGG | + | chr3.1:70351362-70351381 | MS.gene79227:CDS | 45.0% |
| !! | GCTCAAGTTGATATAGCTGC+TGG | + | chr3.1:70350726-70350745 | MS.gene79227:CDS | 45.0% |
| !! | GGCAAACAAGGTGTTGAGAA+AGG | + | chr3.1:70350908-70350927 | MS.gene79227:CDS | 45.0% |
| !! | GTTTTGATCTACAAGCTGCC+CGG | - | chr3.1:70351061-70351080 | None:intergenic | 45.0% |
| ACGACGTGGTGGTTCAAAAG+AGG | + | chr3.1:70349181-70349200 | MS.gene79227:CDS | 50.0% | |
| ACTCTTATTCGCGCTTCGTC+TGG | + | chr3.1:70349455-70349474 | MS.gene79227:CDS | 50.0% | |
| ATCAGAGGCTGATCCTGATG+AGG | + | chr3.1:70350144-70350163 | MS.gene79227:CDS | 50.0% | |
| CACGTGGTGGTTCACTTTGT+AGG | + | chr3.1:70349672-70349691 | MS.gene79227:CDS | 50.0% | |
| CCAGAGAGAAAATCAGGCTG+TGG | + | chr3.1:70349068-70349087 | MS.gene79227:CDS | 50.0% | |
| GCCCATCTTACACCAAAGCA+AGG | + | chr3.1:70351132-70351151 | MS.gene79227:CDS | 50.0% | |
| GCTTGCGTTGCATATGGAGA+AGG | + | chr3.1:70350996-70351015 | MS.gene79227:CDS | 50.0% | |
| TCCATATGCAACGCAAGCCT+CGG | - | chr3.1:70350994-70351013 | None:intergenic | 50.0% | |
| ! | CCACAGCCTGATTTTCTCTC+TGG | - | chr3.1:70349071-70349090 | None:intergenic | 50.0% |
| ! | GAAACCTTTGATGGTCCACG+TGG | - | chr3.1:70349314-70349333 | None:intergenic | 50.0% |
| !! | CAAGGCATCGAAATTCTCCG+AGG | + | chr3.1:70350974-70350993 | MS.gene79227:CDS | 50.0% |
| !! | TAGAGCATTGTTGGAGGCTC+GGG | + | chr3.1:70351363-70351382 | MS.gene79227:CDS | 50.0% |
| !!! | GCGGCCTGCAATTGTTTTTG+TGG | - | chr3.1:70350457-70350476 | None:intergenic | 50.0% |
| AACGCCACGTGGACCATCAA+AGG | + | chr3.1:70349307-70349326 | MS.gene79227:CDS | 55.0% | |
| AGGCTCGCAGGTTAGGAGAT+TGG | + | chr3.1:70350212-70350231 | MS.gene79227:CDS | 55.0% | |
| CAGAAAACGACAACGCCACG+TGG | + | chr3.1:70349296-70349315 | MS.gene79227:CDS | 55.0% | |
| CTGTGGAGCAGAATCTGCAC+CGG | - | chr3.1:70350275-70350294 | None:intergenic | 55.0% | |
| GATCCAAAACGACGACGTGG+TGG | + | chr3.1:70349170-70349189 | MS.gene79227:CDS | 55.0% | |
| GTGACAGCTGCAAGAGGAAG+AGG | + | chr3.1:70350939-70350958 | MS.gene79227:CDS | 55.0% | |
| TATGGGAGCAGAACCCACAG+AGG | - | chr3.1:70349135-70349154 | None:intergenic | 55.0% | |
| TCCGAGGCTTGCGTTGCATA+TGG | + | chr3.1:70350990-70351009 | MS.gene79227:CDS | 55.0% | |
| ! | GAACCACCACGTCGTCGTTT+TGG | - | chr3.1:70349176-70349195 | None:intergenic | 55.0% |
| !!! | CGTGGCGTTGTCGTTTTCTG+TGG | - | chr3.1:70349296-70349315 | None:intergenic | 55.0% |
| CGAGCTGTGACAGCTGCAAG+AGG | + | chr3.1:70350933-70350952 | MS.gene79227:CDS | 60.0% | |
| CGGTGCAGATTCTGCTCCAC+AGG | + | chr3.1:70350273-70350292 | MS.gene79227:CDS | 60.0% | |
| GTAAGTGCACTGAGGCTCGC+AGG | + | chr3.1:70350200-70350219 | MS.gene79227:CDS | 60.0% | |
| TGCACTGAGGCTCGCAGGTT+AGG | + | chr3.1:70350205-70350224 | MS.gene79227:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 70349053 | 70351414 | 70349053 | ID=MS.gene79227 |
| chr3.1 | mRNA | 70349053 | 70351414 | 70349053 | ID=MS.gene79227.t1;Parent=MS.gene79227 |
| chr3.1 | exon | 70349053 | 70349957 | 70349053 | ID=MS.gene79227.t1.exon1;Parent=MS.gene79227.t1 |
| chr3.1 | CDS | 70349053 | 70349957 | 70349053 | ID=cds.MS.gene79227.t1;Parent=MS.gene79227.t1 |
| chr3.1 | exon | 70350099 | 70350294 | 70350099 | ID=MS.gene79227.t1.exon2;Parent=MS.gene79227.t1 |
| chr3.1 | CDS | 70350099 | 70350294 | 70350099 | ID=cds.MS.gene79227.t1;Parent=MS.gene79227.t1 |
| chr3.1 | exon | 70350579 | 70350751 | 70350579 | ID=MS.gene79227.t1.exon3;Parent=MS.gene79227.t1 |
| chr3.1 | CDS | 70350579 | 70350751 | 70350579 | ID=cds.MS.gene79227.t1;Parent=MS.gene79227.t1 |
| chr3.1 | exon | 70350848 | 70351181 | 70350848 | ID=MS.gene79227.t1.exon4;Parent=MS.gene79227.t1 |
| chr3.1 | CDS | 70350848 | 70351181 | 70350848 | ID=cds.MS.gene79227.t1;Parent=MS.gene79227.t1 |
| chr3.1 | exon | 70351289 | 70351414 | 70351289 | ID=MS.gene79227.t1.exon5;Parent=MS.gene79227.t1 |
| chr3.1 | CDS | 70351289 | 70351414 | 70351289 | ID=cds.MS.gene79227.t1;Parent=MS.gene79227.t1 |
| Gene Sequence |
| Protein sequence |
