AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79367

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79367.t1 MTR_3g026230 87.179 234 19 1 9 242 16 238 1.02e-108 313
MS.gene79367.t1 MTR_3g026230 68.696 115 22 5 30 136 138 246 3.44e-23 94.7
MS.gene79367.t1 MTR_3g026330 55.205 317 57 5 9 242 16 330 2.46e-74 229
MS.gene79367.t1 MTR_3g026330 68.394 193 49 3 33 215 148 338 9.74e-53 174
MS.gene79367.t1 MTR_3g026330 60.588 170 41 4 28 192 189 337 1.40e-32 121
MS.gene79367.t1 MTR_3g026290 52.568 331 60 5 9 242 16 346 8.30e-72 223
MS.gene79367.t1 MTR_3g026290 65.238 210 48 4 33 231 153 348 6.48e-54 177
MS.gene79367.t1 MTR_3g026290 62.617 107 22 3 42 135 252 353 2.25e-18 83.2
MS.gene79367.t1 MTR_3g026290 66.667 75 20 2 31 102 282 354 2.11e-11 63.2
MS.gene79367.t1 MTR_3g026160 77.717 184 19 2 9 192 16 177 2.28e-68 209
MS.gene79367.t1 MTR_3g026160 65.409 159 30 3 84 242 37 170 5.55e-39 134
MS.gene79367.t1 MTR_3g026160 67.797 118 25 4 136 242 31 146 3.58e-24 95.5
MS.gene79367.t1 MTR_3g026240 53.261 92 38 2 9 100 16 102 7.58e-19 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79367.t1 AT5G09530 61.404 228 66 5 19 242 30 239 1.26e-55 182
MS.gene79367.t1 AT5G09530 56.693 254 65 7 28 237 100 352 1.46e-52 174
MS.gene79367.t1 AT5G09530 60.440 91 28 2 28 112 282 370 2.16e-15 75.1
MS.gene79367.t1 AT5G09520 55.285 123 45 3 9 131 18 130 2.03e-26 99.8
MS.gene79367.t1 AT5G09520 54.737 95 36 2 148 242 40 127 8.17e-16 72.0
MS.gene79367.t1 AT5G09520 61.039 77 29 1 163 238 33 109 1.97e-15 71.2
MS.gene79367.t1 AT5G09520 51.961 102 42 2 129 230 34 128 5.19e-14 67.4
MS.gene79367.t1 AT5G09520 49.074 108 37 2 103 210 41 130 6.31e-14 67.0

Find 87 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGTACCTTTGGTATTTC+TGG 0.080700 3.1:-17201299 None:intergenic
TCGGGTATCTTTGGAATTTC+TGG 0.088558 3.1:-17201062 None:intergenic
AGCTCAGGTTTGGGCAATTC+AGG 0.197717 3.1:-17201014 None:intergenic
AATTCAGGGGCATTAAATTT+AGG 0.220663 3.1:-17201104 None:intergenic
TCAGGTACCTTAGGCAATTC+TGG 0.231204 3.1:-17200855 None:intergenic
TCAGGTACTTTAGGTAATTC+TGG 0.242157 3.1:-17200888 None:intergenic
AACTCTAGCTTTGGTAATTC+AGG 0.247874 3.1:-17201317 None:intergenic
ACCTTTGGTATTTCTGGTTT+GGG 0.248136 3.1:-17201293 None:intergenic
AGTTCAGGCTTTACCAATTC+AGG 0.261051 3.1:-17201350 None:intergenic
AATTCTGGCTTTGGCAATTC+AGG 0.265103 3.1:-17200873 None:intergenic
GACTTTAGGTAGCTCAGGTT+TGG 0.265600 3.1:-17201024 None:intergenic
TTTGGCAATTCGGGTATCTT+TGG 0.268546 3.1:-17201071 None:intergenic
TACCTTTGGTATTTCTGGTT+TGG 0.269930 3.1:-17201294 None:intergenic
TTTGGAAGTTCAGGTACTTT+AGG 0.279783 3.1:-17200897 None:intergenic
TCAAATTTCAATGCAGATAT+AGG 0.293534 3.1:+17200355 MS.gene79367:CDS
TTTGGCAATTCAGGGACTTT+AGG 0.301883 3.1:-17201143 None:intergenic
TTAGGTAATTCAGGAATCTT+AGG 0.302765 3.1:-17200831 None:intergenic
TCAGGTACCTTAGGGATATC+TGG 0.309626 3.1:-17201200 None:intergenic
ATAGACAATTCGGGGACTTT+AGG 0.311738 3.1:-17201038 None:intergenic
ACCTTAGGTAGTTCGGGTTT+TGG 0.322718 3.1:-17201227 None:intergenic
TTAGGCAACTCGGGAACTTT+AGG 0.329308 3.1:-17200987 None:intergenic
TACCTTAGGGATATCTGGTT+TGG 0.332667 3.1:-17201195 None:intergenic
TTCAGGTACCTTAGGTAGTT+CGG 0.333628 3.1:-17201234 None:intergenic
TTTCAAGGTAACTTGGGTTT+TGG 0.337024 3.1:-17201398 None:intergenic
AGCTCGGGCTTTGGAAGTTC+AGG 0.341805 3.1:-17200906 None:intergenic
TCAGGTACCTTAGGTAGTTC+GGG 0.349878 3.1:-17201233 None:intergenic
AAGTCGGACTTTGGCAATTC+GGG 0.351787 3.1:-17201080 None:intergenic
ATAGGTGGAAAATCAAGTTT+TGG 0.353325 3.1:-17200792 None:intergenic
ACTTTGGGAAACTCGGGTTT+TGG 0.357337 3.1:-17200954 None:intergenic
TTTGGTAACTCAGGTACCTT+AGG 0.357882 3.1:-17201209 None:intergenic
TTAGGCAACTCAGGAACTTT+GGG 0.358876 3.1:-17200969 None:intergenic
ACTTTACGTAGTTCATGTTT+TGG 0.362916 3.1:-17201161 None:intergenic
ACTTTAGGTAGCTCAGGTTT+GGG 0.365399 3.1:-17201023 None:intergenic
AATTTCTGGCATAGACAATT+CGG 0.365865 3.1:-17201048 None:intergenic
ACATTAACTTTAGGTAGTTC+AGG 0.370017 3.1:-17201365 None:intergenic
GGAAGCTCAGGCTTTGGTAT+AGG 0.376080 3.1:-17200810 None:intergenic
AATTCTGGCTTAGGTAATTC+AGG 0.380278 3.1:-17200840 None:intergenic
TAAGTCGGACTTTGGCAATT+CGG 0.380730 3.1:-17201081 None:intergenic
AGTTCAGGGACATTAACTTT+AGG 0.387475 3.1:-17201374 None:intergenic
TTGGGCAAGTCAGAGACTTT+TGG 0.389011 3.1:-17201275 None:intergenic
CTCAGGAACTTTGGGAAACT+CGG 0.389158 3.1:-17200961 None:intergenic
ACTTTAGGTAATTCTGGCTT+TGG 0.389572 3.1:-17200882 None:intergenic
TTTAGGCAACTCAGGAACTT+TGG 0.393082 3.1:-17200970 None:intergenic
ATCTTAGGAAGCTCAGGCTT+TGG 0.394512 3.1:-17200816 None:intergenic
ATTTCTGGCATAGACAATTC+GGG 0.397522 3.1:-17201047 None:intergenic
TTTGGTAATTCAGGTACCTT+TGG 0.399783 3.1:-17201308 None:intergenic
AACTTAGGTAGCTCGGGCTT+TGG 0.403695 3.1:-17200915 None:intergenic
TTCAGGGACTTTAGGTGGCT+CGG 0.421818 3.1:-17201135 None:intergenic
ACCTTAGGGATATCTGGTTT+GGG 0.423518 3.1:-17201194 None:intergenic
TTTACCAATTCAGGTACCTT+AGG 0.428581 3.1:-17201341 None:intergenic
GTTACCTAAGGTACCTGAAT+TGG 0.434651 3.1:+17201337 MS.gene79367:CDS
ACCTTAGGTAACTCTAGCTT+TGG 0.436884 3.1:-17201326 None:intergenic
AGAGTATTACAATGGTTGTC+GGG 0.440611 3.1:+17200733 MS.gene79367:CDS
TTTGGCAATTCAGGTACCTT+AGG 0.442441 3.1:-17200864 None:intergenic
TTTGGTAATTCAGGTACCTT+AGG 0.451961 3.1:-17201242 None:intergenic
TCAGGAATCTTAGGAAGCTC+AGG 0.453881 3.1:-17200822 None:intergenic
AATTTAGGTAAGTCGGACTT+TGG 0.460942 3.1:-17201089 None:intergenic
AACATTAAACTTAGGTAGCT+CGG 0.462347 3.1:-17200922 None:intergenic
ACCTTAGGCAATTCTGGCTT+AGG 0.463421 3.1:-17200849 None:intergenic
TTAGGAATTTCAAGGTAACT+TGG 0.464784 3.1:-17201405 None:intergenic
TCGGGGACTTTAGGTAGCTC+AGG 0.467048 3.1:-17201029 None:intergenic
TTGGGCAATTCAGGGAACTT+AGG 0.475381 3.1:-17201005 None:intergenic
GGCAATTCAGGGACTTTAGG+TGG 0.484066 3.1:-17201140 None:intergenic
GGCATTAAATTTAGGTAAGT+CGG 0.487607 3.1:-17201096 None:intergenic
GACAACCATTGTAATACTCT+TGG 0.489157 3.1:-17200730 None:intergenic
AATTCAGGAACATTAAACTT+AGG 0.490699 3.1:-17200930 None:intergenic
ACATTAAACTTAGGTAGCTC+GGG 0.491103 3.1:-17200921 None:intergenic
TTCAGGGAACTTAGGCAACT+CGG 0.499436 3.1:-17200997 None:intergenic
TCAGGGACTTTAGGTGGCTC+GGG 0.502047 3.1:-17201134 None:intergenic
TTGGTAACTCAGGTACCTTA+GGG 0.506353 3.1:-17201208 None:intergenic
AACCATTGTAATACTCTTGG+CGG 0.510875 3.1:-17200727 None:intergenic
GCTCAGGTTTGGGCAATTCA+GGG 0.523757 3.1:-17201013 None:intergenic
AAGAGTATTACAATGGTTGT+CGG 0.526376 3.1:+17200732 MS.gene79367:CDS
TCAGGAACTTTGGGAAACTC+GGG 0.528389 3.1:-17200960 None:intergenic
AGCTCAGGCTTTGGTATAGG+TGG 0.530445 3.1:-17200807 None:intergenic
TAGGAATTTCAAGGTAACTT+GGG 0.539622 3.1:-17201404 None:intergenic
ACCAAAACCCGAACTACCTA+AGG 0.540714 3.1:+17201226 MS.gene79367:CDS
TCGGGAACTTTAGGCAACTC+AGG 0.569614 3.1:-17200978 None:intergenic
TCAGGGAACTTAGGCAACTC+GGG 0.582113 3.1:-17200996 None:intergenic
ACCTAAGCCAGAATTGCCTA+AGG 0.603337 3.1:+17200848 MS.gene79367:CDS
TTTCTGGCATAGACAATTCG+GGG 0.611978 3.1:-17201046 None:intergenic
ACCAAAGCTAGAGTTACCTA+AGG 0.616598 3.1:+17201325 MS.gene79367:CDS
GAGTATTACAATGGTTGTCG+GGG 0.633099 3.1:+17200734 MS.gene79367:CDS
GCCCAAACCAGATATCCCTA+AGG 0.649847 3.1:+17201193 MS.gene79367:CDS
ATCCGCCAAGAGTATTACAA+TGG 0.672419 3.1:+17200725 MS.gene79367:CDS
GCCCAAACCAGAAATACCAA+AGG 0.685777 3.1:+17201292 MS.gene79367:CDS
TCTAGAGTCGAACATACCTG+AGG 0.701502 3.1:+17200767 MS.gene79367:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATGGAAAAATAATTTT+TGG - chr3.1:17200690-17200709 None:intergenic 10.0%
!! AAAAAATAGAACGTTATTGT+TGG - chr3.1:17200389-17200408 None:intergenic 20.0%
!!! CTAATTAAATTTTGTTTTGC+TGG + chr3.1:17200435-17200454 MS.gene79367:intron 20.0%
! AACTAAAAAATGTGTAAGCA+AGG - chr3.1:17200523-17200542 None:intergenic 25.0%
! AATTCAGGAACATTAAACTT+AGG - chr3.1:17200933-17200952 None:intergenic 25.0%
! ACTAAAAAATGTGTAAGCAA+GGG - chr3.1:17200522-17200541 None:intergenic 25.0%
! AGTATAGCTAGAATCATTAA+TGG - chr3.1:17200705-17200724 None:intergenic 25.0%
! TCAAATTTCAATGCAGATAT+AGG + chr3.1:17200355-17200374 MS.gene79367:CDS 25.0%
! TTCAGGAAGATATATTATAG+TGG - chr3.1:17200640-17200659 None:intergenic 25.0%
AACATTAAACTTAGGTAGCT+CGG - chr3.1:17200925-17200944 None:intergenic 30.0%
ACATTAACTTTAGGTAGTTC+AGG - chr3.1:17201368-17201387 None:intergenic 30.0%
GGCATTAAATTTAGGTAAGT+CGG - chr3.1:17201099-17201118 None:intergenic 30.0%
TTAGGTAATTCAGGAATCTT+AGG - chr3.1:17200834-17200853 None:intergenic 30.0%
! ACTTTACGTAGTTCATGTTT+TGG - chr3.1:17201164-17201183 None:intergenic 30.0%
! ATAGGTGGAAAATCAAGTTT+TGG - chr3.1:17200795-17200814 None:intergenic 30.0%
!! AAGAGTATTACAATGGTTGT+CGG + chr3.1:17200732-17200751 MS.gene79367:CDS 30.0%
!! AATTCAGGGGCATTAAATTT+AGG - chr3.1:17201107-17201126 None:intergenic 30.0%
!! AATTTCTGGCATAGACAATT+CGG - chr3.1:17201051-17201070 None:intergenic 30.0%
AACCATTGTAATACTCTTGG+CGG - chr3.1:17200730-17200749 None:intergenic 35.0%
AATTTAGGTAAGTCGGACTT+TGG - chr3.1:17201092-17201111 None:intergenic 35.0%
ACATTAAACTTAGGTAGCTC+GGG - chr3.1:17200924-17200943 None:intergenic 35.0%
AGTTCAGGGACATTAACTTT+AGG - chr3.1:17201377-17201396 None:intergenic 35.0%
GACAACCATTGTAATACTCT+TGG - chr3.1:17200733-17200752 None:intergenic 35.0%
TCAGGTACTTTAGGTAATTC+TGG - chr3.1:17200891-17200910 None:intergenic 35.0%
TTGATGTAAGCCATGAGAAA+AGG - chr3.1:17200663-17200682 None:intergenic 35.0%
TTTACCAATTCAGGTACCTT+AGG - chr3.1:17201344-17201363 None:intergenic 35.0%
TTTGGAAGTTCAGGTACTTT+AGG - chr3.1:17200900-17200919 None:intergenic 35.0%
! AGAGTATTACAATGGTTGTC+GGG + chr3.1:17200733-17200752 MS.gene79367:CDS 35.0%
! TGTTTTGCTGGACAATGTAT+AGG + chr3.1:17200447-17200466 MS.gene79367:intron 35.0%
! TTTGGTAATTCAGGTACCTT+AGG - chr3.1:17201245-17201264 None:intergenic 35.0%
! TTTGGTAATTCAGGTACCTT+TGG - chr3.1:17201245-17201264 None:intergenic 35.0%
!! AACTCTAGCTTTGGTAATTC+AGG - chr3.1:17201320-17201339 None:intergenic 35.0%
!! AATTCTGGCTTAGGTAATTC+AGG - chr3.1:17200843-17200862 None:intergenic 35.0%
!! ACCTTTGGTATTTCTGGTTT+GGG - chr3.1:17201296-17201315 None:intergenic 35.0%
!! ACTTTAGGTAATTCTGGCTT+TGG - chr3.1:17200885-17200904 None:intergenic 35.0%
!! ATTTCTGGCATAGACAATTC+GGG - chr3.1:17201050-17201069 None:intergenic 35.0%
!! TACCTTTGGTATTTCTGGTT+TGG - chr3.1:17201297-17201316 None:intergenic 35.0%
!!! AAATCAAGTTTTGGAACCTC+AGG - chr3.1:17200786-17200805 None:intergenic 35.0%
!!! AGTTCATGTTTTGGCAATTC+AGG - chr3.1:17201155-17201174 None:intergenic 35.0%
!!! GTTCATGTTTTGGCAATTCA+GGG - chr3.1:17201154-17201173 None:intergenic 35.0%
ACCAAAGCTAGAGTTACCTA+AGG + chr3.1:17201325-17201344 MS.gene79367:CDS 40.0%
ACTTTAGGTAGCTCAGGTTT+GGG - chr3.1:17201026-17201045 None:intergenic 40.0%
AGTTCAGGCTTTACCAATTC+AGG - chr3.1:17201353-17201372 None:intergenic 40.0%
ATAGACAATTCGGGGACTTT+AGG - chr3.1:17201041-17201060 None:intergenic 40.0%
GAGTATTACAATGGTTGTCG+GGG + chr3.1:17200734-17200753 MS.gene79367:CDS 40.0%
TAAGCCATGAGAAAAGGTTC+AGG - chr3.1:17200657-17200676 None:intergenic 40.0%
TAAGTCGGACTTTGGCAATT+CGG - chr3.1:17201084-17201103 None:intergenic 40.0%
TACCTTAGGGATATCTGGTT+TGG - chr3.1:17201198-17201217 None:intergenic 40.0%
TCAGGTACCTTTGGTATTTC+TGG - chr3.1:17201302-17201321 None:intergenic 40.0%
TTAGGCAACTCAGGAACTTT+GGG - chr3.1:17200972-17200991 None:intergenic 40.0%
TTCAGGTACCTTAGGTAGTT+CGG - chr3.1:17201237-17201256 None:intergenic 40.0%
TTTAGGCAACTCAGGAACTT+TGG - chr3.1:17200973-17200992 None:intergenic 40.0%
TTTGGCAATTCAGGGACTTT+AGG - chr3.1:17201146-17201165 None:intergenic 40.0%
TTTGGCAATTCAGGTACCTT+AGG - chr3.1:17200867-17200886 None:intergenic 40.0%
TTTGGCAATTCGGGTATCTT+TGG - chr3.1:17201074-17201093 None:intergenic 40.0%
! ACCTTAGGGATATCTGGTTT+GGG - chr3.1:17201197-17201216 None:intergenic 40.0%
! ACCTTAGGTAACTCTAGCTT+TGG - chr3.1:17201329-17201348 None:intergenic 40.0%
! GTTACCTAAGGTACCTGAAT+TGG + chr3.1:17201337-17201356 MS.gene79367:CDS 40.0%
! TCTTCCTGAACCTTTTCTCA+TGG + chr3.1:17200650-17200669 MS.gene79367:intron 40.0%
! TTGGTAACTCAGGTACCTTA+GGG - chr3.1:17201211-17201230 None:intergenic 40.0%
! TTTCTGGCATAGACAATTCG+GGG - chr3.1:17201049-17201068 None:intergenic 40.0%
! TTTGGTAACTCAGGTACCTT+AGG - chr3.1:17201212-17201231 None:intergenic 40.0%
!! AATTCTGGCTTTGGCAATTC+AGG - chr3.1:17200876-17200895 None:intergenic 40.0%
!! ACTTTTGGTAGCTCAGGTTT+TGG - chr3.1:17201263-17201282 None:intergenic 40.0%
!! AGCTCAGGTTTTGGTAATTC+AGG - chr3.1:17201254-17201273 None:intergenic 40.0%
!! ATCCGCCAAGAGTATTACAA+TGG + chr3.1:17200725-17200744 MS.gene79367:CDS 40.0%
!! TCGGGTATCTTTGGAATTTC+TGG - chr3.1:17201065-17201084 None:intergenic 40.0%
AAGTCGGACTTTGGCAATTC+GGG - chr3.1:17201083-17201102 None:intergenic 45.0%
ACCAAAACCCGAACTACCTA+AGG + chr3.1:17201226-17201245 MS.gene79367:CDS 45.0%
ACCTAAGCCAGAATTGCCTA+AGG + chr3.1:17200848-17200867 MS.gene79367:CDS 45.0%
ATCTTAGGAAGCTCAGGCTT+TGG - chr3.1:17200819-17200838 None:intergenic 45.0%
ATGTGTAAGCAAGGGTGAGT+TGG - chr3.1:17200514-17200533 None:intergenic 45.0%
GACTTTAGGTAGCTCAGGTT+TGG - chr3.1:17201027-17201046 None:intergenic 45.0%
GCCCAAACCAGAAATACCAA+AGG + chr3.1:17201292-17201311 MS.gene79367:CDS 45.0%
TCAGGAATCTTAGGAAGCTC+AGG - chr3.1:17200825-17200844 None:intergenic 45.0%
TCAGGTACCTTAGGCAATTC+TGG - chr3.1:17200858-17200877 None:intergenic 45.0%
TCAGGTACCTTAGGGATATC+TGG - chr3.1:17201203-17201222 None:intergenic 45.0%
TCAGGTACCTTAGGTAGTTC+GGG - chr3.1:17201236-17201255 None:intergenic 45.0%
TTAGGCAACTCGGGAACTTT+AGG - chr3.1:17200990-17201009 None:intergenic 45.0%
TTCAGGGAACTTAGGCAACT+CGG - chr3.1:17201000-17201019 None:intergenic 45.0%
TTGGGCAATTCAGGGAACTT+AGG - chr3.1:17201008-17201027 None:intergenic 45.0%
! CTCAGGAACTTTGGGAAACT+CGG - chr3.1:17200964-17200983 None:intergenic 45.0%
! TCAGGAACTTTGGGAAACTC+GGG - chr3.1:17200963-17200982 None:intergenic 45.0%
! TCTAGAGTCGAACATACCTG+AGG + chr3.1:17200767-17200786 MS.gene79367:CDS 45.0%
! TTGGGCAAGTCAGAGACTTT+TGG - chr3.1:17201278-17201297 None:intergenic 45.0%
!! AACTCGGGTTTTGGCAATTC+AGG - chr3.1:17200948-17200967 None:intergenic 45.0%
!! AACTTGGGTTTTGGCAGTTC+AGG - chr3.1:17201392-17201411 None:intergenic 45.0%
!! ACCTTAGGCAATTCTGGCTT+AGG - chr3.1:17200852-17200871 None:intergenic 45.0%
!! ACCTTAGGTAGTTCGGGTTT+TGG - chr3.1:17201230-17201249 None:intergenic 45.0%
!! ACTTGGGTTTTGGCAGTTCA+GGG - chr3.1:17201391-17201410 None:intergenic 45.0%
!! ACTTTGGGAAACTCGGGTTT+TGG - chr3.1:17200957-17200976 None:intergenic 45.0%
!! AGTTCGGGTTTTGGTAACTC+AGG - chr3.1:17201221-17201240 None:intergenic 45.0%
!! CTCGGGTTTTGACAATTCAG+GGG - chr3.1:17201120-17201139 None:intergenic 45.0%
!! GCTCGGGTTTTGACAATTCA+GGG - chr3.1:17201121-17201140 None:intergenic 45.0%
!! TCAGAGACTTTTGGTAGCTC+AGG - chr3.1:17201269-17201288 None:intergenic 45.0%
AACTTAGGTAGCTCGGGCTT+TGG - chr3.1:17200918-17200937 None:intergenic 50.0%
AGCTCAGGTTTGGGCAATTC+AGG - chr3.1:17201017-17201036 None:intergenic 50.0%
GCCCAAACCAGATATCCCTA+AGG + chr3.1:17201193-17201212 MS.gene79367:CDS 50.0%
GCTCAGGTTTGGGCAATTCA+GGG - chr3.1:17201016-17201035 None:intergenic 50.0%
GGCAATTCAGGGACTTTAGG+TGG - chr3.1:17201143-17201162 None:intergenic 50.0%
TCAGGGAACTTAGGCAACTC+GGG - chr3.1:17200999-17201018 None:intergenic 50.0%
TCGGGAACTTTAGGCAACTC+AGG - chr3.1:17200981-17201000 None:intergenic 50.0%
TTCAGGGACTTTAGGTGGCT+CGG - chr3.1:17201138-17201157 None:intergenic 50.0%
! AGCTCAGGCTTTGGTATAGG+TGG - chr3.1:17200810-17200829 None:intergenic 50.0%
! GGAAGCTCAGGCTTTGGTAT+AGG - chr3.1:17200813-17200832 None:intergenic 50.0%
!! GGCTCGGGTTTTGACAATTC+AGG - chr3.1:17201122-17201141 None:intergenic 50.0%
TCAGGGACTTTAGGTGGCTC+GGG - chr3.1:17201137-17201156 None:intergenic 55.0%
TCGGGGACTTTAGGTAGCTC+AGG - chr3.1:17201032-17201051 None:intergenic 55.0%
!! AGCTCGGGCTTTGGAAGTTC+AGG - chr3.1:17200909-17200928 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 17200349 17201418 17200349 ID=MS.gene79367
chr3.1 mRNA 17200349 17201418 17200349 ID=MS.gene79367.t1;Parent=MS.gene79367
chr3.1 exon 17200349 17200376 17200349 ID=MS.gene79367.t1.exon1;Parent=MS.gene79367.t1
chr3.1 CDS 17200349 17200376 17200349 ID=cds.MS.gene79367.t1;Parent=MS.gene79367.t1
chr3.1 exon 17200718 17201418 17200718 ID=MS.gene79367.t1.exon2;Parent=MS.gene79367.t1
chr3.1 CDS 17200718 17201418 17200718 ID=cds.MS.gene79367.t1;Parent=MS.gene79367.t1
Gene Sequence

>MS.gene79367

ATGCTTTCAAATTTCAATGCAGATATAGGTTTGTTAACCAACAATAACGTTCTATTTTTTTTTTTTTTGTTGACAAGAATAAAGTTCTAATTAAATTTTGTTTTGCTGGACAATGTATAGGTAAGAAGTTGAACTAACAATACTTACAACTACACAATCTCACCAACTCACCCTTGCTTACACATTTTTTAGTTGCAATATTTCATCTATAAAAGCTACATACATGACACAACACATACAAAACACACAACAGAAGCATATCAAAATCATTAGTATTGCAAAAAAGTTCCACTATAATATATCTTCCTGAACCTTTTCTCATGGCTTACATCAATTTGCCAAAAATTATTTTTCCATTAATGATTCTAGCTATACTATCCGCCAAGAGTATTACAATGGTTGTCGGGGCACGCAATCTTCTAGAGTCGAACATACCTGAGGTTCCAAAACTTGATTTTCCACCTATACCAAAGCCTGAGCTTCCTAAGATTCCTGAATTACCTAAGCCAGAATTGCCTAAGGTACCTGAATTGCCAAAGCCAGAATTACCTAAAGTACCTGAACTTCCAAAGCCCGAGCTACCTAAGTTTAATGTTCCTGAATTGCCAAAACCCGAGTTTCCCAAAGTTCCTGAGTTGCCTAAAGTTCCCGAGTTGCCTAAGTTCCCTGAATTGCCCAAACCTGAGCTACCTAAAGTCCCCGAATTGTCTATGCCAGAAATTCCAAAGATACCCGAATTGCCAAAGTCCGACTTACCTAAATTTAATGCCCCTGAATTGTCAAAACCCGAGCCACCTAAAGTCCCTGAATTGCCAAAACATGAACTACGTAAAGTCTCTGAGTTGCCCAAACCAGATATCCCTAAGGTACCTGAGTTACCAAAACCCGAACTACCTAAGGTACCTGAATTACCAAAACCTGAGCTACCAAAAGTCTCTGACTTGCCCAAACCAGAAATACCAAAGGTACCTGAATTACCAAAGCTAGAGTTACCTAAGGTACCTGAATTGGTAAAGCCTGAACTACCTAAAGTTAATGTCCCTGAACTGCCAAAACCCAAGTTACCTTGA
Protein sequence

>MS.gene79367.t1

MLSNFNADIAILSAKSITMVVGARNLLESNIPEVPKLDFPPIPKPELPKIPELPKPELPKVPELPKPELPKVPELPKPELPKFNVPELPKPEFPKVPELPKVPELPKFPELPKPELPKVPELSMPEIPKIPELPKSDLPKFNAPELSKPEPPKVPELPKHELRKVSELPKPDIPKVPELPKPELPKVPELPKPELPKVSDLPKPEIPKVPELPKLELPKVPELVKPELPKVNVPELPKPKLP