Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79447.t1 | XP_013459089.1 | 75.6 | 295 | 39 | 4 | 1 | 277 | 1 | 280 | 1.10E-108 | 403.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79447.t1 | A0A072UU19 | 75.6 | 295 | 39 | 4 | 1 | 277 | 1 | 280 | 7.7e-109 | 403.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051795 | MS.gene79447 | 0.858475 | 8.03E-63 | -1.69E-46 |
| MS.gene051826 | MS.gene79447 | 0.8584 | 8.46E-63 | -1.69E-46 |
| MS.gene056302 | MS.gene79447 | 0.803734 | 3.03E-49 | -1.69E-46 |
| MS.gene060347 | MS.gene79447 | 0.825578 | 4.34E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79447.t1 | MTR_3g024330 | 78.644 | 295 | 30 | 5 | 1 | 277 | 1 | 280 | 1.02e-133 | 416 |
| MS.gene79447.t1 | MTR_3g024330 | 78.644 | 295 | 30 | 5 | 1 | 277 | 1 | 280 | 1.34e-133 | 416 |
| MS.gene79447.t1 | MTR_4g109420 | 54.683 | 331 | 79 | 6 | 1 | 278 | 1 | 313 | 7.06e-90 | 293 |
| MS.gene79447.t1 | MTR_4g109420 | 54.683 | 331 | 79 | 6 | 1 | 278 | 1 | 313 | 7.43e-90 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79447.t1 | AT5G07980 | 33.333 | 306 | 140 | 8 | 1 | 260 | 1 | 288 | 3.17e-28 | 115 |
| MS.gene79447.t1 | AT5G07980 | 33.333 | 306 | 140 | 8 | 1 | 260 | 1 | 288 | 3.17e-28 | 115 |
| MS.gene79447.t1 | AT5G07940 | 35.256 | 312 | 128 | 11 | 1 | 260 | 1 | 290 | 4.24e-27 | 112 |
| MS.gene79447.t1 | AT5G07940 | 35.256 | 312 | 128 | 11 | 1 | 260 | 1 | 290 | 4.24e-27 | 112 |
| MS.gene79447.t1 | AT5G07940 | 35.577 | 312 | 127 | 11 | 1 | 260 | 1 | 290 | 4.59e-27 | 112 |
| MS.gene79447.t1 | AT5G07940 | 35.577 | 312 | 127 | 11 | 1 | 260 | 1 | 290 | 4.59e-27 | 112 |
| MS.gene79447.t1 | AT5G07940 | 35.577 | 312 | 127 | 11 | 1 | 260 | 1 | 290 | 4.59e-27 | 112 |
| MS.gene79447.t1 | AT5G07970 | 30.719 | 306 | 149 | 7 | 1 | 260 | 1 | 289 | 4.17e-24 | 103 |
| MS.gene79447.t1 | AT5G07970 | 30.719 | 306 | 149 | 7 | 1 | 260 | 1 | 289 | 4.17e-24 | 103 |
| MS.gene79447.t1 | AT5G07970 | 30.719 | 306 | 149 | 7 | 1 | 260 | 1 | 289 | 4.17e-24 | 103 |
Find 94 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTAAAATTCTTCAAAT+TGG | 0.187841 | 3.4:+16804571 | None:intergenic |
| TCATGTCAATTTGATTTCTT+TGG | 0.200247 | 3.4:-16804179 | MS.gene79447:CDS |
| CATTCTGCTTCTCCTATTAA+TGG | 0.208742 | 3.4:-16803942 | MS.gene79447:CDS |
| CAGGAATAAGCAACAATATA+TGG | 0.234072 | 3.4:-16804631 | MS.gene79447:CDS |
| TTCTTCAAATTGGAAATAAA+AGG | 0.235943 | 3.4:+16804581 | None:intergenic |
| CTGTCCACTGCTTCGTTTCC+AGG | 0.240883 | 3.4:+16804728 | None:intergenic |
| TTTACAGGAATTCCATTAAT+AGG | 0.246833 | 3.4:+16803930 | None:intergenic |
| GCACAATGGAGCTAATATTA+TGG | 0.254180 | 3.4:-16804218 | MS.gene79447:CDS |
| AAGTTAGATGCCTCATTTAC+AGG | 0.261231 | 3.4:+16803915 | None:intergenic |
| TCTTACGGGGTTCCAATATC+TGG | 0.306161 | 3.4:-16803733 | MS.gene79447:CDS |
| CGGGGTTCCAATATCTGGTT+CGG | 0.321127 | 3.4:-16803728 | MS.gene79447:CDS |
| CTGCTTGAGTGTGAAAATAA+AGG | 0.321292 | 3.4:+16803692 | None:intergenic |
| GCCTCTGCTGTTCTTGCATC+TGG | 0.326754 | 3.4:+16804048 | None:intergenic |
| CATATATTGTTGCTTATTCC+TGG | 0.327608 | 3.4:+16804632 | None:intergenic |
| GATGGGTTTGGTTCATAATC+AGG | 0.332672 | 3.4:-16803766 | MS.gene79447:CDS |
| CTTACAGCCACTTGTTGGTT+TGG | 0.343925 | 3.4:+16804277 | None:intergenic |
| CATCTGATTTCTTCCAGACT+CGG | 0.344421 | 3.4:+16804300 | None:intergenic |
| CGCAACGCTTGTCCTTGTTC+AGG | 0.352668 | 3.4:+16803792 | None:intergenic |
| TTAGAGGACCCATGCATAAC+TGG | 0.365102 | 3.4:+16803835 | None:intergenic |
| ATGCATGGGTCCTCTAATAA+TGG | 0.366473 | 3.4:-16803829 | MS.gene79447:CDS |
| AAAGAAACCTGAGGCATTGC+AGG | 0.367300 | 3.4:+16803664 | None:intergenic |
| CCTTTACCTAGACAGCATTC+AGG | 0.379819 | 3.4:-16804113 | MS.gene79447:intron |
| GTGCCTCCCGAACCAGATAT+TGG | 0.386442 | 3.4:+16803721 | None:intergenic |
| TGTCAATTTGATTTCTTTGG+AGG | 0.396541 | 3.4:-16804176 | MS.gene79447:CDS |
| AGCGTTGCGCATGATGGGTT+TGG | 0.396760 | 3.4:-16803778 | MS.gene79447:CDS |
| TAGCTCCATTGTGCCTAGTC+TGG | 0.397159 | 3.4:+16804227 | None:intergenic |
| CACAATGGAGCTAATATTAT+GGG | 0.400078 | 3.4:-16804217 | MS.gene79447:CDS |
| CAGGGAGATCAGTCTCTTAC+GGG | 0.402064 | 3.4:-16803747 | MS.gene79447:CDS |
| TGTCTTGAAATAGACGGATC+TGG | 0.403579 | 3.4:+16803978 | None:intergenic |
| GTTATGCAACTAATGCAAAT+TGG | 0.407675 | 3.4:-16803876 | MS.gene79447:CDS |
| TCAAATTCGAGGCCCGAGTC+TGG | 0.413030 | 3.4:-16804313 | MS.gene79447:CDS |
| GGGGTTCCAATATCTGGTTC+GGG | 0.417946 | 3.4:-16803727 | MS.gene79447:CDS |
| GCCTCGAATTTGATTGTGAC+AGG | 0.421484 | 3.4:+16804323 | None:intergenic |
| TGGCTACATGCAGGGACAAC+AGG | 0.423041 | 3.4:-16804254 | MS.gene79447:CDS |
| CTCAAGCAGTTGATGGGAAC+TGG | 0.426385 | 3.4:-16804655 | MS.gene79447:CDS |
| TGCATTAGTTGCATAACATC+AGG | 0.430659 | 3.4:+16803882 | None:intergenic |
| AGCAAAGCAACAGAATTCTA+TGG | 0.432458 | 3.4:-16804003 | MS.gene79447:CDS |
| TATCATTCTCAAGCAGTTGA+TGG | 0.438076 | 3.4:-16804662 | MS.gene79447:CDS |
| CAGCAATATTCTCATGTTCA+TGG | 0.441874 | 3.4:-16803637 | MS.gene79447:CDS |
| AAGGCACACCAGCCGATCTC+TGG | 0.443734 | 3.4:+16804600 | None:intergenic |
| GTCTTGAAATAGACGGATCT+GGG | 0.449718 | 3.4:+16803979 | None:intergenic |
| CTCTGTCACAGATTCTGAGC+AGG | 0.451692 | 3.4:-16804383 | MS.gene79447:CDS |
| TCAGGGAGATCAGTCTCTTA+CGG | 0.461898 | 3.4:-16803748 | MS.gene79447:CDS |
| CTGGAAACGAAGCAGTGGAC+AGG | 0.466228 | 3.4:-16804727 | MS.gene79447:CDS |
| GCAGTTGATGGGAACTGGCC+AGG | 0.467826 | 3.4:-16804650 | MS.gene79447:CDS |
| GGCTGTAAGTGGCTACATGC+AGG | 0.470025 | 3.4:-16804263 | MS.gene79447:CDS |
| TGAGTGTGAAAATAAAGGTT+AGG | 0.481556 | 3.4:+16803697 | None:intergenic |
| AACATAAGGTCCATTATTAG+AGG | 0.482759 | 3.4:+16803819 | None:intergenic |
| AGGACAAGCGTTGCGCATGA+TGG | 0.488222 | 3.4:-16803784 | MS.gene79447:CDS |
| CTTGAGAATGATACTGTCCC+TGG | 0.491739 | 3.4:+16804672 | None:intergenic |
| TAATATTATGGGAATGGATA+CGG | 0.494833 | 3.4:-16804206 | MS.gene79447:CDS |
| CTTGTTCAGGAGATAACATA+AGG | 0.495211 | 3.4:+16803805 | None:intergenic |
| ATCTGATTTCTTCCAGACTC+GGG | 0.496372 | 3.4:+16804301 | None:intergenic |
| AGGAATAAGCAACAATATAT+GGG | 0.508193 | 3.4:-16804630 | MS.gene79447:CDS |
| TGGTCAAGAAAACTTGTCCC+AGG | 0.509065 | 3.4:-16804690 | MS.gene79447:CDS |
| ACCTGTCACAATCAAATTCG+AGG | 0.514477 | 3.4:-16804324 | MS.gene79447:CDS |
| TGAGGTGGATTATCTATGCC+TGG | 0.518173 | 3.4:-16804746 | None:intergenic |
| AGATAAGCCTGCAATGCCTC+AGG | 0.518875 | 3.4:-16803671 | MS.gene79447:CDS |
| AGCCACTTACAGCCACTTGT+TGG | 0.519653 | 3.4:+16804272 | None:intergenic |
| TAATGGAATTCCTGTAAATG+AGG | 0.519658 | 3.4:-16803925 | MS.gene79447:CDS |
| GGACAAGCGTTGCGCATGAT+GGG | 0.520087 | 3.4:-16803783 | MS.gene79447:CDS |
| CATTAATAGGAGAAGCAGAA+TGG | 0.524161 | 3.4:+16803943 | None:intergenic |
| TGGAGCTAATATTATGGGAA+TGG | 0.527561 | 3.4:-16804212 | MS.gene79447:CDS |
| GGTGCATCTCCAGTTATGCA+TGG | 0.529580 | 3.4:-16803844 | MS.gene79447:CDS |
| CTCAGAATCTGTGACAGAGA+AGG | 0.531143 | 3.4:+16804387 | None:intergenic |
| GCTGGCAGCCAGAGATCGGC+TGG | 0.534281 | 3.4:-16804608 | MS.gene79447:CDS |
| ATGGGCTGGCAGCCAGAGAT+CGG | 0.541580 | 3.4:-16804612 | MS.gene79447:CDS |
| ATCATTCTCAAGCAGTTGAT+GGG | 0.544393 | 3.4:-16804661 | MS.gene79447:CDS |
| TCAGAATCTGTGACAGAGAA+GGG | 0.547300 | 3.4:+16804388 | None:intergenic |
| ATGGGTTTGGTTCATAATCA+GGG | 0.547903 | 3.4:-16803765 | MS.gene79447:CDS |
| AGCAATATTCTCATGTTCAT+GGG | 0.555284 | 3.4:-16803636 | MS.gene79447:CDS |
| ATAAGCAACAATATATGGGC+TGG | 0.555945 | 3.4:-16804626 | MS.gene79447:CDS |
| AACCAACAAGTGGCTGTAAG+TGG | 0.556831 | 3.4:-16804274 | MS.gene79447:CDS |
| GTGCATCTCCAGTTATGCAT+GGG | 0.571860 | 3.4:-16803843 | MS.gene79447:CDS |
| GCTGTAAGTGGCTACATGCA+GGG | 0.593658 | 3.4:-16804262 | MS.gene79447:CDS |
| TTCAAACTATGTCGCAAATG+TGG | 0.593929 | 3.4:+16804346 | None:intergenic |
| GGTCAAGAAAACTTGTCCCA+GGG | 0.599004 | 3.4:-16804689 | MS.gene79447:CDS |
| TGGAAACGAAGCAGTGGACA+GGG | 0.602523 | 3.4:-16804726 | MS.gene79447:CDS |
| TCTGTCACAGATTCTGAGCA+GGG | 0.613667 | 3.4:-16804382 | MS.gene79447:CDS |
| TCAGATGCCAAACCAACAAG+TGG | 0.624458 | 3.4:-16804284 | MS.gene79447:CDS |
| ATGAGGCATCTAACTTCATG+TGG | 0.634961 | 3.4:-16803908 | MS.gene79447:CDS |
| TAACTGGAGATGCACCACGC+TGG | 0.638001 | 3.4:+16803851 | None:intergenic |
| ACCAGATGCAAGAACAGCAG+AGG | 0.645673 | 3.4:-16804049 | MS.gene79447:CDS |
| ACTGTCTGTCTTGAAATAGA+CGG | 0.646312 | 3.4:+16803972 | None:intergenic |
| CTTATGTTATCTCCTGAACA+AGG | 0.647986 | 3.4:-16803804 | MS.gene79447:CDS |
| TTGAGAATGATACTGTCCCT+GGG | 0.651612 | 3.4:+16804673 | None:intergenic |
| TATGCCTGGAAACGAAGCAG+TGG | 0.666332 | 3.4:-16804732 | MS.gene79447:CDS |
| TGAACATGAGAATATTGCTG+TGG | 0.669035 | 3.4:+16803640 | None:intergenic |
| GAACATGAGAATATTGCTGT+GGG | 0.674874 | 3.4:+16803641 | None:intergenic |
| GTTCCAATATCTGGTTCGGG+AGG | 0.680201 | 3.4:-16803724 | MS.gene79447:CDS |
| TCTTGAAATAGACGGATCTG+GGG | 0.686694 | 3.4:+16803980 | None:intergenic |
| TGCTGTGGGAAAGAAACCTG+AGG | 0.709781 | 3.4:+16803655 | None:intergenic |
| AGGGAGATCAGTCTCTTACG+GGG | 0.724337 | 3.4:-16803746 | MS.gene79447:CDS |
| AATGCAAATTGGCTCCAGCG+TGG | 0.726430 | 3.4:-16803865 | MS.gene79447:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAAATGTATAAAAAA+TGG | + | chr3.4:16803855-16803874 | None:intergenic | 10.0% |
| !! | TTGATTAAAATTCTTCAAAT+TGG | + | chr3.4:16803774-16803793 | None:intergenic | 15.0% |
| !!! | TTTTTGAATAACTAAAACAA+TGG | - | chr3.4:16803871-16803890 | MS.gene79447:CDS | 15.0% |
| !! | TATAAAAAATGGATAATGAC+AGG | + | chr3.4:16803844-16803863 | None:intergenic | 20.0% |
| !! | TTCTTCAAATTGGAAATAAA+AGG | + | chr3.4:16803764-16803783 | None:intergenic | 20.0% |
| !! | TTTCTTGACCAAAAAAATTA+TGG | + | chr3.4:16803643-16803662 | None:intergenic | 20.0% |
| ! | AGGAATAAGCAACAATATAT+GGG | - | chr3.4:16803712-16803731 | MS.gene79447:CDS | 25.0% |
| ! | TAATATTATGGGAATGGATA+CGG | - | chr3.4:16804136-16804155 | MS.gene79447:intron | 25.0% |
| ! | TTTACAGGAATTCCATTAAT+AGG | + | chr3.4:16804415-16804434 | None:intergenic | 25.0% |
| !! | TCATGTCAATTTGATTTCTT+TGG | - | chr3.4:16804163-16804182 | MS.gene79447:intron | 25.0% |
| !!! | AATTTTAATCAACAGCAATC+TGG | - | chr3.4:16803782-16803801 | MS.gene79447:CDS | 25.0% |
| AACATAAGGTCCATTATTAG+AGG | + | chr3.4:16804526-16804545 | None:intergenic | 30.0% | |
| AGCAATATTCTCATGTTCAT+GGG | - | chr3.4:16804706-16804725 | MS.gene79447:CDS | 30.0% | |
| CACAATGGAGCTAATATTAT+GGG | - | chr3.4:16804125-16804144 | MS.gene79447:intron | 30.0% | |
| CAGGAATAAGCAACAATATA+TGG | - | chr3.4:16803711-16803730 | MS.gene79447:CDS | 30.0% | |
| GTTATGCAACTAATGCAAAT+TGG | - | chr3.4:16804466-16804485 | MS.gene79447:intron | 30.0% | |
| TAATGGAATTCCTGTAAATG+AGG | - | chr3.4:16804417-16804436 | MS.gene79447:intron | 30.0% | |
| TGAGTGTGAAAATAAAGGTT+AGG | + | chr3.4:16804648-16804667 | None:intergenic | 30.0% | |
| ! | CATATATTGTTGCTTATTCC+TGG | + | chr3.4:16803713-16803732 | None:intergenic | 30.0% |
| ! | TGTCAATTTGATTTCTTTGG+AGG | - | chr3.4:16804166-16804185 | MS.gene79447:CDS | 30.0% |
| AAGTTAGATGCCTCATTTAC+AGG | + | chr3.4:16804430-16804449 | None:intergenic | 35.0% | |
| ACTGTCTGTCTTGAAATAGA+CGG | + | chr3.4:16804373-16804392 | None:intergenic | 35.0% | |
| AGCAAAGCAACAGAATTCTA+TGG | - | chr3.4:16804339-16804358 | MS.gene79447:CDS | 35.0% | |
| ATAAGCAACAATATATGGGC+TGG | - | chr3.4:16803716-16803735 | MS.gene79447:CDS | 35.0% | |
| ATCATTCTCAAGCAGTTGAT+GGG | - | chr3.4:16803681-16803700 | MS.gene79447:CDS | 35.0% | |
| CAGCAATATTCTCATGTTCA+TGG | - | chr3.4:16804705-16804724 | MS.gene79447:CDS | 35.0% | |
| CATTAATAGGAGAAGCAGAA+TGG | + | chr3.4:16804402-16804421 | None:intergenic | 35.0% | |
| CATTCTGCTTCTCCTATTAA+TGG | - | chr3.4:16804400-16804419 | MS.gene79447:CDS | 35.0% | |
| CTGCTTGAGTGTGAAAATAA+AGG | + | chr3.4:16804653-16804672 | None:intergenic | 35.0% | |
| CTTATGTTATCTCCTGAACA+AGG | - | chr3.4:16804538-16804557 | MS.gene79447:intron | 35.0% | |
| CTTGTTCAGGAGATAACATA+AGG | + | chr3.4:16804540-16804559 | None:intergenic | 35.0% | |
| GAACATGAGAATATTGCTGT+GGG | + | chr3.4:16804704-16804723 | None:intergenic | 35.0% | |
| GCACAATGGAGCTAATATTA+TGG | - | chr3.4:16804124-16804143 | MS.gene79447:intron | 35.0% | |
| TATCATTCTCAAGCAGTTGA+TGG | - | chr3.4:16803680-16803699 | MS.gene79447:CDS | 35.0% | |
| TGAACATGAGAATATTGCTG+TGG | + | chr3.4:16804705-16804724 | None:intergenic | 35.0% | |
| TGCATTAGTTGCATAACATC+AGG | + | chr3.4:16804463-16804482 | None:intergenic | 35.0% | |
| TGGAGCTAATATTATGGGAA+TGG | - | chr3.4:16804130-16804149 | MS.gene79447:intron | 35.0% | |
| TTCAAACTATGTCGCAAATG+TGG | + | chr3.4:16803999-16804018 | None:intergenic | 35.0% | |
| TTTATTCCTGAATGCTGTCT+AGG | + | chr3.4:16804238-16804257 | None:intergenic | 35.0% | |
| ! | ATGGGTTTGGTTCATAATCA+GGG | - | chr3.4:16804577-16804596 | MS.gene79447:CDS | 35.0% |
| !!! | GACAGGGTCCATAATTTTTT+TGG | - | chr3.4:16803632-16803651 | MS.gene79447:CDS | 35.0% |
| ACCTGTCACAATCAAATTCG+AGG | - | chr3.4:16804018-16804037 | MS.gene79447:CDS | 40.0% | |
| ATCTGATTTCTTCCAGACTC+GGG | + | chr3.4:16804044-16804063 | None:intergenic | 40.0% | |
| ATGCATGGGTCCTCTAATAA+TGG | - | chr3.4:16804513-16804532 | MS.gene79447:intron | 40.0% | |
| CATCTGATTTCTTCCAGACT+CGG | + | chr3.4:16804045-16804064 | None:intergenic | 40.0% | |
| GTCTTGAAATAGACGGATCT+GGG | + | chr3.4:16804366-16804385 | None:intergenic | 40.0% | |
| TCAGAATCTGTGACAGAGAA+GGG | + | chr3.4:16803957-16803976 | None:intergenic | 40.0% | |
| TCTTGAAATAGACGGATCTG+GGG | + | chr3.4:16804365-16804384 | None:intergenic | 40.0% | |
| TGTCTTGAAATAGACGGATC+TGG | + | chr3.4:16804367-16804386 | None:intergenic | 40.0% | |
| TTGAGAATGATACTGTCCCT+GGG | + | chr3.4:16803672-16803691 | None:intergenic | 40.0% | |
| ! | ATGAGGCATCTAACTTCATG+TGG | - | chr3.4:16804434-16804453 | MS.gene79447:intron | 40.0% |
| ! | GATGGGTTTGGTTCATAATC+AGG | - | chr3.4:16804576-16804595 | MS.gene79447:CDS | 40.0% |
| AACCAACAAGTGGCTGTAAG+TGG | - | chr3.4:16804068-16804087 | MS.gene79447:CDS | 45.0% | |
| CAAGTAAGTGGTCACCAGAA+TGG | - | chr3.4:16804196-16804215 | MS.gene79447:CDS | 45.0% | |
| CCTGAATGCTGTCTAGGTAA+AGG | + | chr3.4:16804232-16804251 | None:intergenic | 45.0% | |
| CCTTTACCTAGACAGCATTC+AGG | - | chr3.4:16804229-16804248 | MS.gene79447:CDS | 45.0% | |
| CTCAGAATCTGTGACAGAGA+AGG | + | chr3.4:16803958-16803977 | None:intergenic | 45.0% | |
| CTTGAGAATGATACTGTCCC+TGG | + | chr3.4:16803673-16803692 | None:intergenic | 45.0% | |
| GCCTCGAATTTGATTGTGAC+AGG | + | chr3.4:16804022-16804041 | None:intergenic | 45.0% | |
| GGTCAAGAAAACTTGTCCCA+GGG | - | chr3.4:16803653-16803672 | MS.gene79447:CDS | 45.0% | |
| GTGCATCTCCAGTTATGCAT+GGG | - | chr3.4:16804499-16804518 | MS.gene79447:intron | 45.0% | |
| TCAGATGCCAAACCAACAAG+TGG | - | chr3.4:16804058-16804077 | MS.gene79447:CDS | 45.0% | |
| TCAGGGAGATCAGTCTCTTA+CGG | - | chr3.4:16804594-16804613 | MS.gene79447:CDS | 45.0% | |
| TCTGTCACAGATTCTGAGCA+GGG | - | chr3.4:16803960-16803979 | MS.gene79447:CDS | 45.0% | |
| TCTTACGGGGTTCCAATATC+TGG | - | chr3.4:16804609-16804628 | MS.gene79447:CDS | 45.0% | |
| TGGTCAAGAAAACTTGTCCC+AGG | - | chr3.4:16803652-16803671 | MS.gene79447:CDS | 45.0% | |
| TTAGAGGACCCATGCATAAC+TGG | + | chr3.4:16804510-16804529 | None:intergenic | 45.0% | |
| ! | AAGGCTGAAGCATTCCATTC+TGG | + | chr3.4:16804213-16804232 | None:intergenic | 45.0% |
| ! | CTTACAGCCACTTGTTGGTT+TGG | + | chr3.4:16804068-16804087 | None:intergenic | 45.0% |
| ! | GACAACAGGTTTTCCAGACT+AGG | - | chr3.4:16804102-16804121 | MS.gene79447:CDS | 45.0% |
| ! | GTTTTCCAGACTAGGCACAA+TGG | - | chr3.4:16804110-16804129 | MS.gene79447:intron | 45.0% |
| !! | AAAGAAACCTGAGGCATTGC+AGG | + | chr3.4:16804681-16804700 | None:intergenic | 45.0% |
| ACCAGATGCAAGAACAGCAG+AGG | - | chr3.4:16804293-16804312 | MS.gene79447:CDS | 50.0% | |
| AGATAAGCCTGCAATGCCTC+AGG | - | chr3.4:16804671-16804690 | MS.gene79447:CDS | 50.0% | |
| AGCCACTTACAGCCACTTGT+TGG | + | chr3.4:16804073-16804092 | None:intergenic | 50.0% | |
| AGGGAGATCAGTCTCTTACG+GGG | - | chr3.4:16804596-16804615 | MS.gene79447:CDS | 50.0% | |
| CAGGGAGATCAGTCTCTTAC+GGG | - | chr3.4:16804595-16804614 | MS.gene79447:CDS | 50.0% | |
| CGGGGTTCCAATATCTGGTT+CGG | - | chr3.4:16804614-16804633 | MS.gene79447:CDS | 50.0% | |
| CTCTGTCACAGATTCTGAGC+AGG | - | chr3.4:16803959-16803978 | MS.gene79447:CDS | 50.0% | |
| GCTGTAAGTGGCTACATGCA+GGG | - | chr3.4:16804080-16804099 | MS.gene79447:CDS | 50.0% | |
| GGAGGTCAACAGCAAGTAAG+TGG | - | chr3.4:16804184-16804203 | MS.gene79447:CDS | 50.0% | |
| GGTGCATCTCCAGTTATGCA+TGG | - | chr3.4:16804498-16804517 | MS.gene79447:intron | 50.0% | |
| TAGCTCCATTGTGCCTAGTC+TGG | + | chr3.4:16804118-16804137 | None:intergenic | 50.0% | |
| TGCTGTGGGAAAGAAACCTG+AGG | + | chr3.4:16804690-16804709 | None:intergenic | 50.0% | |
| TGGAAACGAAGCAGTGGACA+GGG | - | chr3.4:16803616-16803635 | MS.gene79447:CDS | 50.0% | |
| ! | AATGCAAATTGGCTCCAGCG+TGG | - | chr3.4:16804477-16804496 | MS.gene79447:intron | 50.0% |
| ! | GGGGTTCCAATATCTGGTTC+GGG | - | chr3.4:16804615-16804634 | MS.gene79447:CDS | 50.0% |
| !! | CTCAAGCAGTTGATGGGAAC+TGG | - | chr3.4:16803687-16803706 | MS.gene79447:CDS | 50.0% |
| !! | GTTCCAATATCTGGTTCGGG+AGG | - | chr3.4:16804618-16804637 | MS.gene79447:CDS | 50.0% |
| CGCAACGCTTGTCCTTGTTC+AGG | + | chr3.4:16804553-16804572 | None:intergenic | 55.0% | |
| CTGGAAACGAAGCAGTGGAC+AGG | - | chr3.4:16803615-16803634 | MS.gene79447:CDS | 55.0% | |
| CTGTCCACTGCTTCGTTTCC+AGG | + | chr3.4:16803617-16803636 | None:intergenic | 55.0% | |
| GCCTCTGCTGTTCTTGCATC+TGG | + | chr3.4:16804297-16804316 | None:intergenic | 55.0% | |
| GGCTGTAAGTGGCTACATGC+AGG | - | chr3.4:16804079-16804098 | MS.gene79447:CDS | 55.0% | |
| GTGCCTCCCGAACCAGATAT+TGG | + | chr3.4:16804624-16804643 | None:intergenic | 55.0% | |
| TAACTGGAGATGCACCACGC+TGG | + | chr3.4:16804494-16804513 | None:intergenic | 55.0% | |
| TCAAATTCGAGGCCCGAGTC+TGG | - | chr3.4:16804029-16804048 | MS.gene79447:CDS | 55.0% | |
| TGGCTACATGCAGGGACAAC+AGG | - | chr3.4:16804088-16804107 | MS.gene79447:CDS | 55.0% | |
| ! | AGGACAAGCGTTGCGCATGA+TGG | - | chr3.4:16804558-16804577 | MS.gene79447:intron | 55.0% |
| ! | GGACAAGCGTTGCGCATGAT+GGG | - | chr3.4:16804559-16804578 | MS.gene79447:intron | 55.0% |
| !! | AGCGTTGCGCATGATGGGTT+TGG | - | chr3.4:16804564-16804583 | MS.gene79447:CDS | 55.0% |
| AAGGCACACCAGCCGATCTC+TGG | + | chr3.4:16803745-16803764 | None:intergenic | 60.0% | |
| !! | ATGGGCTGGCAGCCAGAGAT+CGG | - | chr3.4:16803730-16803749 | MS.gene79447:CDS | 60.0% |
| !! | GCAGTTGATGGGAACTGGCC+AGG | - | chr3.4:16803692-16803711 | MS.gene79447:CDS | 60.0% |
| GCTGGCAGCCAGAGATCGGC+TGG | - | chr3.4:16803734-16803753 | MS.gene79447:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 16803611 | 16804753 | 16803611 | ID=MS.gene79447 |
| chr3.4 | mRNA | 16803611 | 16804753 | 16803611 | ID=MS.gene79447.t1;Parent=MS.gene79447 |
| chr3.4 | exon | 16804561 | 16804753 | 16804561 | ID=MS.gene79447.t1.exon1;Parent=MS.gene79447.t1 |
| chr3.4 | CDS | 16804561 | 16804753 | 16804561 | ID=cds.MS.gene79447.t1;Parent=MS.gene79447.t1 |
| chr3.4 | exon | 16804166 | 16804424 | 16804166 | ID=MS.gene79447.t1.exon2;Parent=MS.gene79447.t1 |
| chr3.4 | CDS | 16804166 | 16804424 | 16804166 | ID=cds.MS.gene79447.t1;Parent=MS.gene79447.t1 |
| chr3.4 | exon | 16803611 | 16804124 | 16803611 | ID=MS.gene79447.t1.exon3;Parent=MS.gene79447.t1 |
| chr3.4 | CDS | 16803611 | 16804124 | 16803611 | ID=cds.MS.gene79447.t1;Parent=MS.gene79447.t1 |
| Gene Sequence |
| Protein sequence |
