Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79629.t1 | XP_003621144.1 | 98.8 | 672 | 8 | 0 | 1 | 672 | 1 | 672 | 0.00E+00 | 1301.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79629.t1 | B9RUN8 | 79.9 | 678 | 125 | 4 | 1 | 672 | 1 | 673 | 1.7e-311 | 1069.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79629.t1 | G7KZV0 | 98.8 | 672 | 8 | 0 | 1 | 672 | 1 | 672 | 0.0e+00 | 1301.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene79629 | MS.gene055526 | PPI |
MS.gene40954 | MS.gene79629 | PPI |
MS.gene79629 | MS.gene013250 | PPI |
MS.gene41663 | MS.gene79629 | PPI |
MS.gene06336 | MS.gene79629 | PPI |
MS.gene049222 | MS.gene79629 | PPI |
MS.gene013177 | MS.gene79629 | PPI |
MS.gene06250 | MS.gene79629 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79629.t1 | MTR_7g009740 | 98.810 | 672 | 8 | 0 | 1 | 672 | 1 | 672 | 0.0 | 1370 |
MS.gene79629.t1 | MTR_3g097250 | 51.159 | 647 | 293 | 5 | 34 | 671 | 41 | 673 | 0.0 | 654 |
MS.gene79629.t1 | MTR_1g052535 | 25.932 | 590 | 343 | 21 | 7 | 554 | 15 | 552 | 5.11e-34 | 138 |
MS.gene79629.t1 | MTR_1g052535 | 32.063 | 315 | 168 | 10 | 7 | 293 | 15 | 311 | 8.14e-30 | 124 |
MS.gene79629.t1 | MTR_4g079360 | 31.518 | 257 | 134 | 4 | 64 | 296 | 54 | 292 | 3.16e-28 | 120 |
MS.gene79629.t1 | MTR_2g069320 | 42.466 | 146 | 78 | 3 | 67 | 208 | 19 | 162 | 7.66e-25 | 110 |
MS.gene79629.t1 | MTR_2g069050 | 42.361 | 144 | 81 | 2 | 67 | 208 | 19 | 162 | 1.01e-24 | 110 |
MS.gene79629.t1 | MTR_2g069310 | 42.361 | 144 | 81 | 2 | 67 | 208 | 19 | 162 | 2.61e-24 | 108 |
MS.gene79629.t1 | MTR_1g048000 | 41.667 | 144 | 82 | 2 | 67 | 208 | 19 | 162 | 6.42e-24 | 107 |
MS.gene79629.t1 | MTR_7g044770 | 36.145 | 166 | 81 | 3 | 65 | 222 | 60 | 208 | 3.45e-22 | 102 |
MS.gene79629.t1 | MTR_4g119340 | 37.241 | 145 | 73 | 3 | 67 | 208 | 14 | 143 | 1.33e-19 | 94.4 |
MS.gene79629.t1 | MTR_4g116430 | 32.886 | 149 | 86 | 2 | 64 | 208 | 136 | 274 | 6.33e-17 | 85.5 |
MS.gene79629.t1 | MTR_2g020660 | 36.747 | 166 | 80 | 5 | 65 | 222 | 53 | 201 | 9.96e-17 | 84.7 |
MS.gene79629.t1 | MTR_4g101750 | 31.285 | 179 | 98 | 4 | 38 | 212 | 68 | 225 | 1.00e-14 | 78.2 |
MS.gene79629.t1 | MTR_4g101750 | 31.285 | 179 | 98 | 4 | 38 | 212 | 68 | 225 | 1.10e-14 | 78.2 |
MS.gene79629.t1 | MTR_2g064840 | 25.547 | 274 | 164 | 7 | 47 | 311 | 480 | 722 | 3.02e-11 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79629.t1 | AT5G39900 | 77.448 | 674 | 139 | 6 | 1 | 672 | 1 | 663 | 0.0 | 1058 |
MS.gene79629.t1 | AT5G08650 | 51.223 | 613 | 285 | 4 | 59 | 671 | 78 | 676 | 0.0 | 617 |
MS.gene79629.t1 | AT5G08650 | 48.905 | 548 | 266 | 4 | 59 | 606 | 78 | 611 | 0.0 | 535 |
MS.gene79629.t1 | AT5G13650 | 26.799 | 556 | 321 | 22 | 34 | 554 | 49 | 553 | 2.57e-37 | 148 |
MS.gene79629.t1 | AT5G13650 | 27.308 | 520 | 297 | 20 | 67 | 554 | 82 | 552 | 4.20e-37 | 148 |
MS.gene79629.t1 | AT2G31060 | 26.139 | 505 | 292 | 13 | 60 | 528 | 52 | 511 | 2.09e-30 | 127 |
MS.gene79629.t1 | AT2G31060 | 26.337 | 505 | 295 | 14 | 60 | 528 | 52 | 515 | 2.59e-29 | 124 |
MS.gene79629.t1 | AT1G56070 | 42.361 | 144 | 81 | 2 | 67 | 208 | 19 | 162 | 5.50e-24 | 108 |
MS.gene79629.t1 | AT1G56070 | 42.361 | 144 | 81 | 2 | 67 | 208 | 19 | 162 | 5.50e-24 | 108 |
MS.gene79629.t1 | AT1G56070 | 42.361 | 144 | 81 | 2 | 67 | 208 | 19 | 162 | 5.50e-24 | 108 |
MS.gene79629.t1 | AT3G12915 | 41.667 | 144 | 82 | 2 | 67 | 208 | 19 | 162 | 1.86e-23 | 106 |
MS.gene79629.t1 | AT3G22980 | 40.000 | 145 | 69 | 2 | 67 | 208 | 9 | 138 | 2.98e-21 | 99.8 |
MS.gene79629.t1 | AT3G22980 | 40.000 | 145 | 69 | 2 | 67 | 208 | 9 | 138 | 2.98e-21 | 99.8 |
MS.gene79629.t1 | AT3G22980 | 40.000 | 145 | 69 | 2 | 67 | 208 | 9 | 138 | 2.98e-21 | 99.8 |
MS.gene79629.t1 | AT1G06220 | 37.584 | 149 | 79 | 3 | 64 | 208 | 135 | 273 | 3.97e-20 | 95.9 |
MS.gene79629.t1 | AT1G06220 | 37.584 | 149 | 79 | 3 | 64 | 208 | 135 | 273 | 3.97e-20 | 95.9 |
MS.gene79629.t1 | AT1G06220 | 37.584 | 149 | 79 | 3 | 64 | 208 | 135 | 273 | 3.97e-20 | 95.9 |
MS.gene79629.t1 | AT1G45332 | 34.146 | 164 | 83 | 3 | 67 | 222 | 65 | 211 | 6.33e-20 | 95.1 |
MS.gene79629.t1 | AT2G45030 | 34.146 | 164 | 83 | 3 | 67 | 222 | 65 | 211 | 6.79e-20 | 95.1 |
MS.gene79629.t1 | AT5G25230 | 36.242 | 149 | 81 | 3 | 64 | 208 | 121 | 259 | 1.16e-18 | 91.3 |
MS.gene79629.t1 | AT5G25230 | 36.242 | 149 | 81 | 3 | 64 | 208 | 121 | 259 | 1.16e-18 | 91.3 |
MS.gene79629.t1 | AT1G62750 | 32.886 | 149 | 80 | 3 | 68 | 212 | 97 | 229 | 6.07e-14 | 75.9 |
MS.gene79629.t1 | AT4G11160 | 26.070 | 257 | 148 | 6 | 47 | 296 | 204 | 425 | 3.26e-13 | 73.6 |
MS.gene79629.t1 | AT4G11160 | 26.070 | 257 | 148 | 6 | 47 | 296 | 206 | 427 | 3.41e-13 | 73.6 |
MS.gene79629.t1 | AT4G11160 | 26.070 | 257 | 148 | 6 | 47 | 296 | 206 | 427 | 3.43e-13 | 73.2 |
Find 144 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTCTTGCTGATCGGTTAT+TGG | 0.208053 | 7.3:+88401831 | MS.gene79629:CDS |
GCTGATCCCGACCGTGTTAA+AGG | 0.211297 | 7.3:+88403411 | MS.gene79629:CDS |
ATCAATAATGGCTTTCTCTT+TGG | 0.231245 | 7.3:-88401740 | None:intergenic |
CCTACTGGAATCTTGTTTAC+TGG | 0.242995 | 7.3:+88403735 | MS.gene79629:CDS |
GATCGGTTATTGGAGCTTAC+TGG | 0.258431 | 7.3:+88401841 | MS.gene79629:CDS |
CTTTCTCTTTGGTGTTGTTT+TGG | 0.269768 | 7.3:-88401729 | None:intergenic |
GTGGATGTGGAACCTCTTCC+AGG | 0.288978 | 7.3:+88403840 | MS.gene79629:CDS |
TTGCTAACATCGGCTAAAAC+TGG | 0.312340 | 7.3:+88403474 | MS.gene79629:CDS |
TACACGAAAGAAGAAGCTTT+TGG | 0.312536 | 7.3:+88409199 | MS.gene79629:CDS |
ATCTCCAATACGTGCCTCTT+TGG | 0.323148 | 7.3:-88403793 | None:intergenic |
CTGCTCTAGGTCTAGGGTTC+AGG | 0.324685 | 7.3:+88404610 | MS.gene79629:CDS |
TCAGTATCTTGATAAATTGC+AGG | 0.349168 | 7.3:+88401891 | MS.gene79629:CDS |
ACGAAACCTTCAATAGTTCA+TGG | 0.351084 | 7.3:-88409289 | None:intergenic |
TGCTTGTCAGGGCGTGCTTT+TGG | 0.352582 | 7.3:+88403278 | MS.gene79629:CDS |
AAGGTCACTAGCTGCTTGTC+AGG | 0.359410 | 7.3:+88403266 | MS.gene79629:CDS |
TCGGAATACTCATAGATATA+AGG | 0.362737 | 7.3:-88405727 | None:intergenic |
TGCCATGTTGCTGTCGTTGA+TGG | 0.371153 | 7.3:+88403621 | MS.gene79629:CDS |
CTATGCATCATTTGATTATG+AGG | 0.373945 | 7.3:+88407670 | MS.gene79629:CDS |
CATCCTGAACTTACGCCTAC+TGG | 0.374824 | 7.3:+88403720 | MS.gene79629:CDS |
TGTTTGTGTAAACAGGAATA+TGG | 0.376872 | 7.3:+88405673 | MS.gene79629:intron |
TGGGTTATTCTACTTGATAA+AGG | 0.383459 | 7.3:-88401661 | None:intergenic |
GGGTTATTCTACTTGATAAA+GGG | 0.385895 | 7.3:-88401660 | None:intergenic |
GAGCGTATACCTCCGCCTCC+TGG | 0.396452 | 7.3:+88403531 | MS.gene79629:CDS |
GATCAAACATCGATTTCAAT+TGG | 0.397668 | 7.3:-88403434 | None:intergenic |
TCATATGAAGCTATGGATAT+AGG | 0.398593 | 7.3:+88403690 | MS.gene79629:CDS |
GAGAAATTTCTCACAAGCTC+TGG | 0.408314 | 7.3:-88401778 | None:intergenic |
AGCGTTCCATGAACTATTGA+AGG | 0.411225 | 7.3:+88409283 | MS.gene79629:CDS |
CAAGTTGGTTACGTTATAAC+CGG | 0.420904 | 7.3:+88403759 | MS.gene79629:CDS |
CTTCAAAGCAGCAAAACATA+TGG | 0.421700 | 7.3:+88404476 | MS.gene79629:CDS |
CACCCTTCTCTCTGAGCGTA+GGG | 0.424744 | 7.3:+88406043 | MS.gene79629:CDS |
ACTAGCACTGCTCTAGGTCT+AGG | 0.427464 | 7.3:+88404603 | MS.gene79629:CDS |
CAGGCTACCACTCGTTGCTT+GGG | 0.430966 | 7.3:-88405870 | None:intergenic |
ACAGGCTACCACTCGTTGCT+TGG | 0.433082 | 7.3:-88405871 | None:intergenic |
GAAGTATCGTCTTCCTTTGA+GGG | 0.433212 | 7.3:+88407601 | MS.gene79629:CDS |
TGTCTTAGGTTGAGAGAGAA+AGG | 0.434285 | 7.3:+88403097 | MS.gene79629:intron |
AATAGTGATGATTCTAAAGA+TGG | 0.440643 | 7.3:+88403171 | MS.gene79629:CDS |
TGCTAACATCGGCTAAAACT+GGG | 0.444983 | 7.3:+88403475 | MS.gene79629:CDS |
TGAAGTATCGTCTTCCTTTG+AGG | 0.445367 | 7.3:+88407600 | MS.gene79629:CDS |
ACAGAAAAGTGCACGTGTAA+TGG | 0.445676 | 7.3:-88401695 | None:intergenic |
GCAACGAGTGGTAGCCTGTT+GGG | 0.445716 | 7.3:+88405875 | MS.gene79629:CDS |
GTGTAATGGAAAATCTTTGA+TGG | 0.449154 | 7.3:-88401681 | None:intergenic |
TACTAAAAGCACTGTGGATG+TGG | 0.454084 | 7.3:+88403827 | MS.gene79629:CDS |
TCAGAGAGAAGGGTGATAAC+AGG | 0.457080 | 7.3:-88406035 | None:intergenic |
TAAGATTTCTTCGGCGGCCA+CGG | 0.457579 | 7.3:+88403662 | MS.gene79629:CDS |
GTACCGACTCAAATCAATAA+TGG | 0.458373 | 7.3:-88401752 | None:intergenic |
CTCTTTGGTTGTCCGCATGC+CGG | 0.461516 | 7.3:-88403778 | None:intergenic |
ATCATTGCACATGTTGATCA+TGG | 0.464136 | 7.3:+88401802 | MS.gene79629:CDS |
CGTTGATGGTGCCCTGCGCA+AGG | 0.466416 | 7.3:+88403635 | MS.gene79629:CDS |
TCTTAGGTTGAGAGAGAAAG+GGG | 0.468401 | 7.3:+88403099 | MS.gene79629:intron |
ATCGGTTATTGGAGCTTACT+GGG | 0.469088 | 7.3:+88401842 | MS.gene79629:CDS |
TATTACTGTGGGTTCCCAAC+AGG | 0.471236 | 7.3:-88405889 | None:intergenic |
TTGATGGTGCCCTGCGCAAG+GGG | 0.472833 | 7.3:+88403637 | MS.gene79629:CDS |
TGGAGTACTCGTTCATTGAC+AGG | 0.474578 | 7.3:+88406075 | MS.gene79629:CDS |
AATTGCTAAGTTAGATTCAA+AGG | 0.477085 | 7.3:-88403355 | None:intergenic |
TGATCTATCTTATTTATGAC+AGG | 0.477963 | 7.3:-88403381 | None:intergenic |
TTGGTTGTTGATGCTGCTCA+AGG | 0.478306 | 7.3:+88403297 | MS.gene79629:CDS |
GTCTTAGGTTGAGAGAGAAA+GGG | 0.479725 | 7.3:+88403098 | MS.gene79629:intron |
AAGATTTCTTCGGCGGCCAC+GGG | 0.480686 | 7.3:+88403663 | MS.gene79629:CDS |
CAGTTATCAACCATCTGATC+TGG | 0.482709 | 7.3:+88408455 | MS.gene79629:intron |
AATTGGCCTTTAACACGGTC+GGG | 0.487568 | 7.3:-88403417 | None:intergenic |
GGATTAGACGGTAATGCAGC+AGG | 0.489291 | 7.3:-88405849 | None:intergenic |
TTGTTTGATTCAAGGTATGT+TGG | 0.494037 | 7.3:+88406011 | MS.gene79629:intron |
ATCTTGTTTACTGGACAAGT+TGG | 0.500611 | 7.3:+88403744 | MS.gene79629:CDS |
ACAACCAAAGAGGCACGTAT+TGG | 0.500914 | 7.3:+88403789 | MS.gene79629:CDS |
AATGTTCTTGCCAAGTGTTA+CGG | 0.504696 | 7.3:+88409167 | MS.gene79629:CDS |
GGTATACGCTCTATAACTGC+TGG | 0.507876 | 7.3:-88403519 | None:intergenic |
ATTCCAGTAGGCGTAAGTTC+AGG | 0.509737 | 7.3:-88403723 | None:intergenic |
TCAAAATCAGATCCATCAGC+TGG | 0.514059 | 7.3:-88404516 | None:intergenic |
TAATCATACAAGCCGCCATT+GGG | 0.514147 | 7.3:+88408708 | MS.gene79629:CDS |
TTGAATCTTATTGACACACC+TGG | 0.514281 | 7.3:+88403216 | MS.gene79629:CDS |
TCACCCTTCTCTCTGAGCGT+AGG | 0.518017 | 7.3:+88406042 | MS.gene79629:CDS |
AAAGAAACTAGCACTGCTCT+AGG | 0.519512 | 7.3:+88404597 | MS.gene79629:CDS |
AGCGTATACCTCCGCCTCCT+GGG | 0.519604 | 7.3:+88403532 | MS.gene79629:CDS |
GGGACTATTAAGAAAGGACT+TGG | 0.521527 | 7.3:+88401862 | MS.gene79629:CDS |
ATATCGTGTTGCGCGTGAGT+TGG | 0.525773 | 7.3:+88408548 | MS.gene79629:CDS |
GGGTAAATCATATGAAGCTA+TGG | 0.531790 | 7.3:+88403683 | MS.gene79629:CDS |
TCACTCTTCCCAGGAGGCGG+AGG | 0.532337 | 7.3:-88403540 | None:intergenic |
AAATTTCTCACAAGCTCTGG+TGG | 0.532728 | 7.3:-88401775 | None:intergenic |
AATTGAAGAAAGTCATAGAC+AGG | 0.535063 | 7.3:+88408577 | MS.gene79629:CDS |
CAATTGGCCTTTAACACGGT+CGG | 0.536159 | 7.3:-88403418 | None:intergenic |
CACCCCTACGCTCAGAGAGA+AGG | 0.539680 | 7.3:-88406046 | None:intergenic |
TTCTTTAGTGACAGAGACAC+TGG | 0.539691 | 7.3:-88404580 | None:intergenic |
TGTAATGGAAAATCTTTGAT+GGG | 0.540161 | 7.3:-88401680 | None:intergenic |
GATTCACTCTTCCCAGGAGG+CGG | 0.540294 | 7.3:-88403543 | None:intergenic |
TTTGTTAATCTACCTTCCAT+CGG | 0.542249 | 7.3:-88405746 | None:intergenic |
TCAATAACAATTTCCCTCAA+AGG | 0.543263 | 7.3:-88407614 | None:intergenic |
GATGTTAGCAATGCATCACT+CGG | 0.543356 | 7.3:-88403462 | None:intergenic |
ATTTCAATTGGCCTTTAACA+CGG | 0.543668 | 7.3:-88403422 | None:intergenic |
CTAGCACTGCTCTAGGTCTA+GGG | 0.546049 | 7.3:+88404604 | MS.gene79629:CDS |
TGAGCGTAGGGGTGAACAGT+TGG | 0.547250 | 7.3:+88406055 | MS.gene79629:CDS |
TCGTGTTGCGCGTGAGTTGG+TGG | 0.548600 | 7.3:+88408551 | MS.gene79629:CDS |
CGCTTCTTGTGGTACATCAA+CGG | 0.548934 | 7.3:-88409264 | None:intergenic |
GTTGATGGTGCCCTGCGCAA+GGG | 0.550686 | 7.3:+88403636 | MS.gene79629:CDS |
TCAAGTTTCACCAGATCAGA+TGG | 0.552288 | 7.3:-88408465 | None:intergenic |
ATAATCATACAAGCCGCCAT+TGG | 0.562406 | 7.3:+88408707 | MS.gene79629:CDS |
TAACTGAAATCTACATGCCC+AGG | 0.564247 | 7.3:-88403234 | None:intergenic |
AATATCACCACCGTAACACT+TGG | 0.564700 | 7.3:-88409177 | None:intergenic |
TATATCTATGAGTATTCCGA+TGG | 0.567155 | 7.3:+88405730 | MS.gene79629:CDS |
TGATGATTCTAAAGATGGAA+AGG | 0.567306 | 7.3:+88403176 | MS.gene79629:CDS |
CGGTCAAGCAGTGGATGCAA+TGG | 0.568928 | 7.3:+88408500 | MS.gene79629:CDS |
CTTACTGGGACTATTAAGAA+AGG | 0.573377 | 7.3:+88401856 | MS.gene79629:CDS |
ACCCCTACGCTCAGAGAGAA+GGG | 0.575490 | 7.3:-88406045 | None:intergenic |
TCATAGATATAAGGCACAGT+AGG | 0.576685 | 7.3:-88405718 | None:intergenic |
TGATTTCGAGTTATGAACAA+TGG | 0.578989 | 7.3:-88408526 | None:intergenic |
AAGCCATTATTGATTTGAGT+CGG | 0.580491 | 7.3:+88401749 | MS.gene79629:CDS |
ATCACCGCTTTACCTGGAAG+AGG | 0.580633 | 7.3:-88403852 | None:intergenic |
CCAGTAAACAAGATTCCAGT+AGG | 0.583432 | 7.3:-88403735 | None:intergenic |
AAACTTGATATTCTCTTGAA+CGG | 0.585139 | 7.3:+88408480 | MS.gene79629:CDS |
GAATTGAAGAGTATAACATC+AGG | 0.586284 | 7.3:+88407647 | MS.gene79629:CDS |
TGTGCAAGAGCTTACTCACT+AGG | 0.587619 | 7.3:-88405927 | None:intergenic |
AAAGAAGATTCACTCTTCCC+AGG | 0.588401 | 7.3:-88403549 | None:intergenic |
ACATCGGCTAAAACTGGGGT+GGG | 0.588454 | 7.3:+88403480 | MS.gene79629:CDS |
ACTCGTTGCTTGGGATTAGA+CGG | 0.592284 | 7.3:-88405861 | None:intergenic |
CTAAGTTAGATTCAAAGGCA+AGG | 0.592310 | 7.3:-88403350 | None:intergenic |
AGCAACGAGTGGTAGCCTGT+TGG | 0.593264 | 7.3:+88405874 | MS.gene79629:CDS |
AACATCGGCTAAAACTGGGG+TGG | 0.597452 | 7.3:+88403479 | MS.gene79629:CDS |
AACTATAGTAGCTATTACTG+TGG | 0.603566 | 7.3:-88405901 | None:intergenic |
ATTTCAGTTATGAAGTGTCA+AGG | 0.604176 | 7.3:+88403247 | MS.gene79629:CDS |
TGAATCTTATTGACACACCT+GGG | 0.609608 | 7.3:+88403217 | MS.gene79629:CDS |
GATATAAGGCACAGTAGGAA+CGG | 0.610044 | 7.3:-88405713 | None:intergenic |
TCTCTTGAACGGTCAAGCAG+TGG | 0.611860 | 7.3:+88408491 | MS.gene79629:CDS |
GAAAATCTACTCTTGCTGAT+CGG | 0.612484 | 7.3:+88401824 | MS.gene79629:CDS |
ACTATAGTAGCTATTACTGT+GGG | 0.615089 | 7.3:-88405900 | None:intergenic |
AGTTCATGGAACGCTTCTTG+TGG | 0.617418 | 7.3:-88409275 | None:intergenic |
TCTATGAGTATTCCGATGGA+AGG | 0.618329 | 7.3:+88405734 | MS.gene79629:CDS |
GCTAACATCGGCTAAAACTG+GGG | 0.618963 | 7.3:+88403476 | MS.gene79629:CDS |
CACCATCAACGACAGCAACA+TGG | 0.620893 | 7.3:-88403623 | None:intergenic |
ATGTAAGCTTCTCTATAGCA+TGG | 0.622369 | 7.3:-88404548 | None:intergenic |
AGGTCACTAGCTGCTTGTCA+GGG | 0.631964 | 7.3:+88403267 | MS.gene79629:CDS |
ACACGGTCGGGATCAGCAGT+CGG | 0.632485 | 7.3:-88403405 | None:intergenic |
AATTTCTCACAAGCTCTGGT+GGG | 0.640012 | 7.3:-88401774 | None:intergenic |
TGCAATTTATCAAGATACTG+AGG | 0.641130 | 7.3:-88401889 | None:intergenic |
CGGCATGCGGACAACCAAAG+AGG | 0.646422 | 7.3:+88403779 | MS.gene79629:CDS |
AGCTTCATATGATTTACCCG+TGG | 0.651701 | 7.3:-88403679 | None:intergenic |
TGATGGTGCCCTGCGCAAGG+GGG | 0.653669 | 7.3:+88403638 | MS.gene79629:CDS |
GTCTAATCCCAAGCAACGAG+TGG | 0.653785 | 7.3:+88405863 | MS.gene79629:CDS |
ATGTTAGCAATGCATCACTC+GGG | 0.657087 | 7.3:-88403461 | None:intergenic |
GGACTATTAAGAAAGGACTT+GGG | 0.667758 | 7.3:+88401863 | MS.gene79629:CDS |
ACCCTTCTCTCTGAGCGTAG+GGG | 0.674829 | 7.3:+88406044 | MS.gene79629:CDS |
GTTACGTTATAACCGGCATG+CGG | 0.684641 | 7.3:+88403766 | MS.gene79629:CDS |
GAGTGATGCATTGCTAACAT+CGG | 0.698424 | 7.3:+88403464 | MS.gene79629:CDS |
GAAGATTCACTCTTCCCAGG+AGG | 0.718205 | 7.3:-88403546 | None:intergenic |
GTTCTTGCCAAGTGTTACGG+TGG | 0.722489 | 7.3:+88409170 | MS.gene79629:CDS |
TTACCATACTAAAAGCACTG+TGG | 0.769440 | 7.3:+88403821 | MS.gene79629:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 88401589 | 88409313 | 88401589 | ID=MS.gene79629 |
chr7.3 | mRNA | 88401589 | 88409313 | 88401589 | ID=MS.gene79629.t1;Parent=MS.gene79629 |
chr7.3 | exon | 88401589 | 88401912 | 88401589 | ID=MS.gene79629.t1.exon1;Parent=MS.gene79629.t1 |
chr7.3 | CDS | 88401589 | 88401912 | 88401589 | ID=cds.MS.gene79629.t1;Parent=MS.gene79629.t1 |
chr7.3 | exon | 88403105 | 88403861 | 88403105 | ID=MS.gene79629.t1.exon2;Parent=MS.gene79629.t1 |
chr7.3 | CDS | 88403105 | 88403861 | 88403105 | ID=cds.MS.gene79629.t1;Parent=MS.gene79629.t1 |
chr7.3 | exon | 88404475 | 88404631 | 88404475 | ID=MS.gene79629.t1.exon3;Parent=MS.gene79629.t1 |
chr7.3 | CDS | 88404475 | 88404631 | 88404475 | ID=cds.MS.gene79629.t1;Parent=MS.gene79629.t1 |
chr7.3 | exon | 88404744 | 88404798 | 88404744 | ID=MS.gene79629.t1.exon4;Parent=MS.gene79629.t1 |
chr7.3 | CDS | 88404744 | 88404798 | 88404744 | ID=cds.MS.gene79629.t1;Parent=MS.gene79629.t1 |
chr7.3 | exon | 88405688 | 88405755 | 88405688 | ID=MS.gene79629.t1.exon5;Parent=MS.gene79629.t1 |
chr7.3 | CDS | 88405688 | 88405755 | 88405688 | ID=cds.MS.gene79629.t1;Parent=MS.gene79629.t1 |
chr7.3 | exon | 88405830 | 88405934 | 88405830 | ID=MS.gene79629.t1.exon6;Parent=MS.gene79629.t1 |
chr7.3 | CDS | 88405830 | 88405934 | 88405830 | ID=cds.MS.gene79629.t1;Parent=MS.gene79629.t1 |
chr7.3 | exon | 88406025 | 88406096 | 88406025 | ID=MS.gene79629.t1.exon7;Parent=MS.gene79629.t1 |
chr7.3 | CDS | 88406025 | 88406096 | 88406025 | ID=cds.MS.gene79629.t1;Parent=MS.gene79629.t1 |
chr7.3 | exon | 88407586 | 88407699 | 88407586 | ID=MS.gene79629.t1.exon8;Parent=MS.gene79629.t1 |
chr7.3 | CDS | 88407586 | 88407699 | 88407586 | ID=cds.MS.gene79629.t1;Parent=MS.gene79629.t1 |
chr7.3 | exon | 88408458 | 88408598 | 88408458 | ID=MS.gene79629.t1.exon9;Parent=MS.gene79629.t1 |
chr7.3 | CDS | 88408458 | 88408598 | 88408458 | ID=cds.MS.gene79629.t1;Parent=MS.gene79629.t1 |
chr7.3 | exon | 88408694 | 88408753 | 88408694 | ID=MS.gene79629.t1.exon10;Parent=MS.gene79629.t1 |
chr7.3 | CDS | 88408694 | 88408753 | 88408694 | ID=cds.MS.gene79629.t1;Parent=MS.gene79629.t1 |
chr7.3 | exon | 88409148 | 88409313 | 88409148 | ID=MS.gene79629.t1.exon11;Parent=MS.gene79629.t1 |
chr7.3 | CDS | 88409148 | 88409313 | 88409148 | ID=cds.MS.gene79629.t1;Parent=MS.gene79629.t1 |
Gene Sequence |
Protein sequence |